isoform	chrom	strand	length	exons	structural_category	associated_gene	associated_transcript	ref_length	ref_exons	diff_to_TSS	diff_to_TTS	diff_to_gene_TSS	diff_to_gene_TTS	subcategory	RTS_stage	all_canonical	min_sample_cov	min_cov	min_cov_pos	sd_cov	FL	n_indels	n_indels_junc	bite	iso_exp	gene_exp	ratio_exp	FSM_class	coding	ORF_length	CDS_length	CDS_start	CDS_end	CDS_genomic_start	CDS_genomic_end	predicted_NMD	perc_A_downstream_TTS	seq_A_downstream_TTS	dist_to_cage_peak	within_cage_peak	pos_cage_peak	dist_to_polya_site	within_polya_site	polyA_motif	polyA_dist	ORF_seq	TSS_genomic_coord	TTS_genomic_coord	experiment_id	entry_id	LRGASP_id
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000010	chr1	-	1057	6	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	1060.96476850082	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCACTGCTCAGGTCTTTT	1650	False	NA	-11	True	ATTAAA	-21	NA	4855932	4846600	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_4847025_4847747_4847872_4848970_4849022_4852790_4852957_4854173_4854329_4855795
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000031	chr1	+	2031	14	FSM	ENSMUSG00000033793.13	ENSMUST00000044369.13	2049	14	4	14	4	-14	multi-exon	FALSE	canonical	3	428	junction_7	59.3277926628703	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGAGAAGTGTTCCCAGG	NA	False	NA	84	True	AATAAA	-23	NA	5153306	5232738	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000050	chr1	+	198	1	Intergenic	novelGene_1	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTGCAGGAAAACACAAC	6234	False	NA	NA	False	NA	NA	NA	9456825	9457023	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_9456800_9457000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000054	chr1	+	2051	1	FSM	ENSMUSG00000061024.9	ENSMUST00000072079.9	2048	1	-2	-1	-2	1	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGCATTATTTTTGTAA	NA	False	NA	20	True	AATAAA	-20	NA	9615630	9617681	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_9615600_9617700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000070	chr1	-	2470	1	Genic_Genomic	ENSMUSG00000045210.9	novel	NA	NA	NA	NA	-53	-27344	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGAGAAATTAAAACAAGAG	NA	False	NA	NA	False	NA	NA	NA	9818660	9816190	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr1_-_9816200_9818700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000085	chr1	-	407	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182742.2	400	4	-1	-6	0	4	multi-exon	FALSE	canonical	3	144	junction_1	223.143202649977	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGCAGTAATTTCTTTA	NA	False	NA	-9	True	AATAAA	-18	NA	10014343	10012243	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_10012375_10012547_10012617_10012834_10012943_10014244
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000106	chr1	-	1256	8	NIC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	5	13	combination_of_known_junctions	FALSE	canonical	3	86	junction_7	318.204272730071	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTCCTTCTGTGGTTTTGT	NA	False	NA	-12	True	AATAAA	-15	NA	10108388	10095054	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10108143
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000108	chr1	-	1302	8	NIC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	-7	13	combination_of_known_junctions	FALSE	canonical	3	100	junction_7	313.343653036022	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTCCTTCTGTGGTTTTGT	NA	False	NA	-12	True	AATAAA	-15	NA	10108177	10095054	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107886
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000115	chr1	+	2788	23	ISM	ENSMUSG00000048960.14	ENSMUST00000027056.12	11053	40	67857	133619	-37208	9466	internal_fragment	FALSE	canonical	2	17	junction_16	4.48965753631482	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCGAGCCAGGTATTTT	NA	False	NA	NA	False	AATAAA	-1	NA	11131545	11240286	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_+_11131622_11136017_11136141_11138234_11138340_11150246_11150349_11159940_11160103_11168686_11168821_11171287_11171392_11177826_11177977_11180505_11180651_11182966_11183068_11193344_11193449_11194037_11194088_11202561_11202638_11206988_11207062_11210179_11210323_11210459_11210553_11212872_11213022_11220033_11220120_11223766_11223904_11226464_11226583_11230319_11230505_11232463_11232626_11240076
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000121	chr1	-	504	1	Intergenic	novelGene_2	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTATTAAAAGGAATAG	NA	False	NA	NA	False	NA	NA	NA	11694926	11694422	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_-_11694400_11694900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000124	chr1	+	205	1	Intergenic	novelGene_3	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTACATGTGTTTAAGTGG	NA	False	NA	NA	False	AAGAAA	-6	NA	12705425	12705630	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_12705400_12705600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000138	chr1	-	2643	8	NNC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	-834	32	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_7	143.424871893096	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTTCCTCTTTTCTTTC	NA	False	NA	-26	True	AATAAA	-42	NA	13198221	13183648	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13198120
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000148	chr1	-	2922	11	FSM	ENSMUSG00000025935.11	ENSMUST00000027068.11	2938	11	16	0	16	0	multi-exon	FALSE	canonical	3	1226	junction_5	62.5811473208985	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGTCTATTTTTTGTAA	9672	False	NA	-9	True	ATTAAA	-15	NA	13660118	13634921	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_13636621_13639694_13639856_13640162_13640307_13642026_13642132_13642227_13642299_13646591_13646677_13648323_13648383_13649673_13649791_13649913_13650036_13651246_13651311_13659823
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000152	chr1	-	2982	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	-3	1515	-3	-1515	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	718	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTCTCATCTTTAACCA	NA	False	NA	NA	False	NA	NA	NA	13730773	13695068	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000169	chr1	-	1743	2	FSM	ENSMUSG00000025930.7	ENSMUST00000027062.7	1741	2	-2	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATTGTAAAAGTTCTT	NA	False	NA	4	True	AATAAA	-21	NA	14826216	14823569	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_14824550_14825453
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000184	chr1	+	1200	1	NIC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	0	-15159	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTATAAAGTTGATTATGA	NA	False	NA	NA	False	AATAAA	-1	NA	15875880	15877080	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_15875900_15877100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000207	chr1	-	1265	6	NIC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	-1	5	intron_retention	FALSE	canonical	3	5452	junction_5	662.022839485165	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	-11	True	AATAAA	-19	NA	16174627	16171524	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000224	chr1	-	2002	4	FSM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	0	-1042	0	0	multi-exon	TRUE	canonical	3	1066	junction_3	717.825574603995	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGCACTTGGTCTTTA	NA	False	NA	0	True	AATAAA	-23	NA	16727266	16711948	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727215
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000247	chr1	-	2871	2	Intergenic	novelGene_4	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	26	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTAAAACTTTACCTGCT	NA	False	NA	NA	False	NA	NA	NA	16905320	16902356	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_-_16904173_16904265
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000305	chr1	-	785	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	0	-2	0	2	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653052	24652267	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_24652300_24653100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000331	chr1	-	2859	6	FSM	ENSMUSG00000117310.3	ENSMUST00000027232.15	4129	6	-7	1277	-5	0	multi-exon	FALSE	canonical	3	1976	junction_5	190.472465201666	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCCTTTTCCTAGTTCA	NA	False	NA	NA	False	AATAAA	-24	NA	30988843	30980660	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_30982405_30983012_30983088_30983616_30983748_30984018_30984112_30985118_30985721_30988629
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000333	chr1	-	2856	6	FSM	ENSMUSG00000117310.3	ENSMUST00000076587.6	2851	6	-5	0	-5	0	multi-exon	FALSE	canonical	3	443	junction_5	787.975024984929	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCCTTTTCCTAGTTCA	NA	False	NA	NA	False	AATAAA	-24	NA	30988843	30980660	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_30982405_30983012_30983088_30983616_30983748_30984018_30984112_30985118_30985718_30988629
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000344	chr1	-	1971	14	FSM	ENSMUSG00000026134.12	ENSMUST00000027312.11	1975	14	6	-2	6	2	multi-exon	FALSE	canonical	3	132	junction_10	82.0868352460372	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCAAGTGGGAGTCTT	NA	False	NA	0	True	AATAAA	-20	NA	33708870	33492888	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33701326_33701448_33702857_33702938_33706125_33706230_33707938_33708102_33708704
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000395	chr1	+	211	2	Intergenic	novelGene_5	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTTTTTTTAATATTT	217	False	NA	NA	False	NA	NA	NA	34068802	34129731	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_34068916_34129633
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000403	chr1	+	1831	9	FSM	ENSMUSG00000026127.14	ENSMUST00000027303.14	5836	9	-358	4363	-358	479	multi-exon	FALSE	canonical	3	439	junction_1	56.5552826887109	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTTGTTTGTTTTGTGA	5255	False	NA	49	True	NA	NA	NA	34478573	34484074	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000443	chr1	+	201	1	Intergenic	novelGene_6	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCAAAACGGGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	36019589	36019790	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_36019600_36019800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000445	chr1	+	208	1	Intergenic	novelGene_7	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTTGATTTTTTTTTTTT	NA	False	NA	NA	False	AAAAAG	-4	NA	36090763	36090971	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_36090800_36091000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000451	chr1	-	5592	41	NNC	ENSMUSG00000037470.15	novel	9033	41	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	94.6617134854425	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCTTTTTCTTCTTAC	NA	False	NA	-1	True	NA	NA	NA	36283396	36182562	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_36183333_36185112_36185267_36185705_36185823_36189125_36189241_36190714_36190876_36194153_36194337_36195307_36195393_36196480_36196583_36197188_36197278_36199022_36199108_36200756_36200843_36201285_36201445_36202301_36202492_36203524_36203605_36204589_36204693_36209279_36209376_36212515_36212647_36213159_36213292_36213976_36214184_36215309_36215409_36215856_36215881_36216598_36216698_36218639_36218761_36221550_36221716_36223436_36223569_36224913_36225050_36230609_36230696_36231466_36231587_36234930_36235082_36236624_36236717_36240785_36240847_36241859_36241960_36247022_36247124_36249066_36249146_36250470_36250568_36255212_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000454	chr1	-	5555	40	NNC	ENSMUSG00000037470.15	novel	9033	41	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	91.9080737318219	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCTTTTTCTTCTTAC	NA	False	NA	-1	True	NA	NA	NA	36283383	36182562	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_36183333_36185112_36185267_36185705_36185823_36189125_36189241_36190714_36190876_36194153_36194337_36195307_36195393_36196480_36196583_36197188_36197278_36199022_36199108_36200756_36200843_36201285_36201445_36202301_36202492_36203524_36203605_36204589_36204693_36209279_36209376_36212515_36212647_36213159_36213292_36213976_36214184_36215309_36215409_36216598_36216698_36218639_36218761_36221550_36221716_36223436_36223569_36224913_36225050_36230609_36230696_36231466_36231587_36234930_36235082_36236624_36236717_36240785_36240847_36241859_36241960_36247022_36247124_36249066_36249146_36250470_36250568_36255212_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000462	chr1	+	2177	7	FSM	ENSMUSG00000037447.17	ENSMUST00000115032.8	4640	7	0	2463	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.46572158042361	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGGGTGTACAGCACT	NA	False	NA	NA	False	AATAAA	-25	NA	36346834	36359609	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_36346918_36355289_36355409_36356284_36356406_36356690_36356744_36357164_36357263_36357568_36357735_36358072
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000466	chr1	+	2174	7	FSM	ENSMUSG00000037447.17	ENSMUST00000126413.8	870	7	21	-1325	0	0	multi-exon	FALSE	canonical	2	2	junction_1	8.27479439153761	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGGGTGTACAGCACT	NA	False	NA	NA	False	AATAAA	-25	NA	36346834	36359609	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_36346918_36355292_36355409_36356284_36356406_36356690_36356744_36357164_36357263_36357568_36357735_36358072
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000477	chr1	-	2197	2	FSM	ENSMUSG00000010453.13	ENSMUST00000185614.2	2177	2	24	-44	22	44	multi-exon	TRUE	canonical	3	130	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCACAGAAAGTGTAATGAC	NA	False	NA	NA	False	NA	NA	NA	36408214	36404947	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_36407116_36408185
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000480	chr1	-	1092	8	NIC	ENSMUSG00000001143.14	novel	705	6	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	59.6068753738756	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGAGTTTCTACTCCCTG	NA	False	NA	1	True	AATAAA	-18	NA	36484338	36458949	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_36459117_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000487	chr1	-	3343	7	NIC	ENSMUSG00000001143.14	novel	3378	8	NA	NA	0	-355	intron_retention	FALSE	canonical	3	153	junction_5	19.8997487421324	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAAGCCAATTAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	36484338	36461500	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000522	chr1	-	2249	15	FSM	ENSMUSG00000046337.18	ENSMUST00000170295.8	2286	15	32	5	32	-1	multi-exon	FALSE	canonical	3	61	junction_5	44.2795502622663	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGTTCTGGAGTTCCTT	NA	False	NA	-2	True	ATTAAA	-17	NA	36722232	36601777	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000543	chr1	-	1639	10	FSM	ENSMUSG00000046337.18	ENSMUST00000114981.3	1659	10	36	-16	36	16	multi-exon	FALSE	canonical	3	94	junction_7	27.7328525599353	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCTAATTTTCTTAACATG	NA	False	NA	NA	False	AATACA	-43	NA	36722228	36639040	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000550	chr1	+	194	1	Intergenic	novelGene_8	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAATTTCTTACATTAGC	4901	False	NA	18	True	NA	NA	NA	36707309	36707503	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_36707300_36707500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000570	chr1	-	2284	10	NIC	ENSMUSG00000037351.10	novel	3248	11	NA	NA	-28	-1088	intron_retention	FALSE	canonical	3	484	junction_1	32.9256551253289	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCGGTGTGTGGCTCTGA	NA	False	NA	-19	True	TATAAA	-26	NA	36749056	36738282	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000594	chr1	-	3806	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	55	2	-48	-2	multi-exon	FALSE	canonical	3	395	junction_2	27.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTTCTGTTTCAAGAT	6327	False	NA	-5	True	NA	NA	NA	37469129	37456166	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_37459709_37467422_37467507_37468949
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000617	chr1	-	1219	7	FSM	ENSMUSG00000026088.16	ENSMUST00000027257.10	1231	7	12	0	8	0	multi-exon	FALSE	canonical	3	173	junction_5	18.2543754267908	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGATCCACTCACCTG	NA	False	NA	0	True	AATAAA	-19	NA	37929480	37917968	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_37918445_37918640_37918702_37920013_37920130_37920779_37920867_37921642_37921780_37924295_37924398_37929240
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000648	chr1	+	1758	6	FSM	ENSMUSG00000026078.11	ENSMUST00000027247.11	3914	6	2157	-1	-76	1	multi-exon	FALSE	canonical	3	825	junction_1	70.5532423067856	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGTAAGATTTATTT	NA	False	NA	4	True	AATACA	-14	NA	39026845	39036320	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_39026931_39030326_39030457_39033995_39034087_39034325_39034470_39034815_39035025_39035221
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000651	chr1	+	1091	5	FSM	ENSMUSG00000073702.12	ENSMUST00000086535.12	1049	5	-42	0	-42	0	multi-exon	FALSE	canonical	3	7651	junction_1	2133.80345568658	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGGTTTGAACATGTTT	NA	False	NA	10	True	ATTAAA	-23	NA	39406880	39410992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000670	chr1	-	2395	9	ISM	ENSMUSG00000003134.11	ENSMUST00000193823.2	3512	19	-44	15330	11	2552	5prime_fragment	FALSE	canonical	3	38	junction_1	6.14283118765281	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAACCACCTGGACATAAA	NA	False	NA	NA	False	NA	NA	NA	39517825	39427726	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_-_39428540_39430197_39430369_39431137_39431336_39433145_39433354_39441763_39442005_39444371_39444601_39445832_39445952_39465148_39465260_39517520
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000674	chr1	+	3297	7	FSM	ENSMUSG00000003135.16	ENSMUST00000003219.14	3162	7	-119	-16	-119	0	multi-exon	FALSE	canonical	3	674	junction_2	52.6289421854131	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAGAGTTTATATTATTT	NA	False	NA	NA	False	NA	NA	NA	39574763	39585970	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_39575419_39576496_39576662_39577351_39577505_39578953_39579157_39581480_39581684_39583972_39584070_39584149
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000702	chr1	-	5091	12	FSM	ENSMUSG00000070939.10	ENSMUST00000186694.7	5385	12	245	49	-21	-49	multi-exon	FALSE	canonical	3	38	junction_11	7.4512187699077	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTTTTCTTGGGTCATT	NA	False	NA	-8	True	ATTAAA	-16	NA	43131644	43086428	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_43088996_43090717_43091152_43092570_43092731_43093678_43093826_43095771_43095916_43098257_43098316_43099039_43099382_43101676_43101760_43106633_43106789_43110620_43110816_43114410_43115113_43131540
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000713	chr1	+	230	1	Intergenic	novelGene_9	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAAGCTGAGCAAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	43160577	43160807	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_43160600_43160800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000724	chr1	-	2047	15	FSM	ENSMUSG00000057363.13	ENSMUST00000126008.8	4620	15	9	2564	9	-18	multi-exon	FALSE	canonical	3	170	junction_12	17.2527726254451	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATGGGTTTTGAGCTAC	NA	False	NA	-20	True	AATAAA	-16	NA	43866951	43788689	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43829623_43829805_43836404_43836466_43844512_43844557_43844785_43844835_43846509_43846538_43866774
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000742	chr1	-	1258	7	NIC	ENSMUSG00000026049.12	novel	1272	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	144	junction_6	127.50348579113	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	0	True	ATTAAA	-20	NA	44141593	44125772	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059_44141118_44141487
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000763	chr1	+	3232	10	FSM	ENSMUSG00000041684.12	ENSMUST00000114709.3	3570	10	85	253	74	7	multi-exon	FALSE	canonical	3	41	junction_1	6.90857402520436	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTATGAATTTTAATGTCT	NA	False	NA	21	True	AATAAA	-21	NA	44159212	44183677	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000771	chr1	-	504	1	Intergenic	novelGene_10	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTATTAAAAGGAATAG	NA	False	NA	NA	False	NA	NA	NA	44865299	44864795	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_-_44864800_44865300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000786	chr1	-	4988	10	FSM	ENSMUSG00000025986.7	ENSMUST00000027131.6	5498	10	510	0	510	0	multi-exon	TRUE	canonical	3	237	junction_4	21.0736509753792	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTGTGTTTTCATTGTC	438	False	NA	NA	False	AATAAA	-16	NA	46892696	46846703	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_46849272_46851145_46851337_46857222_46857304_46858224_46858594_46859682_46859804_46865252_46865442_46866502_46866673_46871715_46871924_46874286_46875312_46892630
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000793	chr1	+	200	1	Intergenic	novelGene_11	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCATGAAATGCTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	46922012	46922212	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_46922000_46922200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000797	chr1	-	2838	6	FSM	ENSMUSG00000026107.12	ENSMUST00000027279.12	2838	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	8.25590697622012	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATAGGAGTAACAGAACT	NA	False	NA	-1	True	AATAAA	-32	NA	51517558	51508646	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51516983
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000810	chr1	+	2600	23	NNC	ENSMUSG00000062939.12	novel	2982	24	NA	NA	-2	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_11	8.55089285367565	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTTTCTGGTTTTATT	NA	False	NA	NA	False	AATATA	-21	NA	52047782	52146346	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_52047888_52050941_52051071_52052948_52053094_52104473_52104573_52107904_52107998_52111019_52111099_52113835_52113922_52115691_52115844_52117652_52117812_52118899_52118993_52121676_52121737_52122122_52122231_52123237_52123283_52135943_52136028_52137545_52137645_52139482_52139619_52141010_52141061_52141275_52141371_52141639_52141777_52142006_52142199_52144364_52144432_52144826_52144936_52146068
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000832	chr1	-	3051	13	FSM	ENSMUSG00000026098.14	ENSMUST00000027267.14	3054	13	3	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	15.4495145554804	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTCACGTCCAACC	6055	False	NA	NA	False	AATAAA	-18	NA	53336174	53228345	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53336044
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000865	chr1	-	3054	18	FSM	ENSMUSG00000041303.8	ENSMUST00000041638.8	4582	18	-38	1566	-38	-1566	multi-exon	FALSE	canonical	3	130	junction_11	22.8358062796764	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGCCTTCTGAATCAGTT	6662	False	NA	4	True	AATAAA	-27	NA	54478168	54436728	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000871	chr1	-	4348	25	NNC	ENSMUSG00000025982.14	novel	6195	25	NA	NA	-3	-1850	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	316.410554326004	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGTTTTTTGAAT	NA	False	NA	0	True	AATAAA	-22	NA	55066643	55026181	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_55026652_55027097_55027315_55029457_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000889	chr1	-	2317	12	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	113	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1850.97436034231	1669	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTGTTACCCTTTCCAT	4568	False	NA	-3	True	AATAAA	-19	NA	55127070	55116990	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122221_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000917	chr1	+	967	4	FSM	ENSMUSG00000073676.5	ENSMUST00000075242.7	774	4	-175	-18	-175	18	multi-exon	FALSE	canonical	3	7281	junction_2	538.928154354136	1837	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGGTCGTTTTCTTCCA	NA	False	NA	31	True	AATAAA	-32	NA	55127115	55130484	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_55127572_55128209_55128375_55129871_55129962_55130228
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000960	chr1	-	3045	7	NIC	ENSMUSG00000054770.17	novel	2495	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	25.1859749331515	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTTTCTGTGACTAC	NA	False	NA	-4	True	AATAAA	-20	NA	58009211	57994411	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004487_58004700_58006655_58006883_58008565
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000967	chr1	+	2094	7	ISM	ENSMUSG00000026039.10	ENSMUST00000027202.9	4939	9	19	9472	19	-9471	5prime_fragment	FALSE	canonical	3	186	junction_3	14.4539498638492	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGACTAAGCAGAAAATAA	5158	False	NA	NA	False	AATAAA	-1	NA	58035148	58055586	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_+_58035472_58037254_58037381_58039122_58039299_58040376_58040455_58042052_58042139_58052665_58052902_58054517
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000979	chr1	-	213	1	Intergenic	novelGene_12	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAATCCAGTGGTATTC	NA	False	NA	NA	False	NA	NA	NA	58189416	58189203	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_-_58189200_58189400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000000981	chr1	+	3680	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	197	-1	-29	1	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	1304	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTACTGTGTCTGTGCTTTA	854	False	NA	14	True	NA	NA	NA	58432253	58446513	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001000	chr1	-	1665	12	FSM	ENSMUSG00000026034.18	ENSMUST00000148330.8	1705	12	44	-4	44	4	multi-exon	FALSE	canonical	3	65	junction_9	47.751422461613	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTATAGCTTGGTGTACG	NA	False	NA	-8	True	AATAAA	-24	NA	58463181	58451154	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001043	chr1	+	2325	12	FSM	ENSMUSG00000026027.14	ENSMUST00000027185.11	2960	12	44	591	44	2	multi-exon	FALSE	canonical	3	56	junction_7	10.2964328252857	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTTATATATTTTGTG	NA	False	NA	17	True	AATAAA	-19	NA	59012724	59034283	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031362_59031535_59031809_59031915_59032051_59032297_59032719_59032763_59033451
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001076	chr1	+	208	1	Intergenic	novelGene_13	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATCAAACCTCTCTTTCC	-7	True	NA	NA	False	NA	NA	NA	59698060	59698268	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_59698100_59698300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001079	chr1	+	2027	15	FSM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-54	7534	-16	0	multi-exon	FALSE	canonical	3	1434	junction_3	210.570471503931	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	59724113	59750669	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001124	chr1	+	1803	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-15	-570	-15	570	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTAAAGTGCTTAGATG	NA	False	NA	121	True	AATAAA	-42	NA	60743075	60744878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_60743100_60744900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001145	chr1	-	2702	19	FSM	ENSMUSG00000025968.17	ENSMUST00000168099.9	2590	19	31	-143	-11	4	multi-exon	FALSE	canonical	3	212	junction_18	163.056757519704	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAAGTGTGAAGTTTTT	NA	False	NA	NA	False	AATAAA	-35	NA	63215860	63182750	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215586
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001161	chr1	+	841	6	NIC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_1	1264.85610248755	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63216282	63218815	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_63216451_63216881_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001170	chr1	+	200	1	Intergenic	novelGene_14	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTGGACAGCATCAATCT	24	False	NA	NA	False	NA	NA	NA	63273240	63273440	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_63273200_63273400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001172	chr1	+	3077	26	FSM	ENSMUSG00000025964.16	ENSMUST00000114107.3	6110	26	-330	3363	-10	1	multi-exon	TRUE	canonical	2	8	junction_25	13.3899066464259	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGAATCCTTTTTTTTCT	NA	False	NA	11	True	ATTAAA	-16	NA	63485039	63632072	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_63485572_63486886_63487108_63516837_63516915_63554735_63554800_63567916_63568000_63569393_63569458_63573444_63573518_63574293_63574368_63576077_63576144_63582277_63582350_63584589_63584754_63585574_63585660_63586885_63586977_63588905_63588955_63590919_63591020_63594313_63594386_63594972_63595063_63596566_63596648_63602567_63602619_63603303_63603368_63605760_63605867_63607007_63607128_63610068_63610238_63612045_63612158_63620295_63620387_63631766
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001180	chr1	+	2300	12	FSM	ENSMUSG00000025962.16	ENSMUST00000027103.7	4486	12	5	2181	5	9	multi-exon	FALSE	canonical	3	308	junction_4	54.5943720043143	315	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTGGCTGATCACTGCA	NA	False	NA	14	True	AATAAA	-25	NA	63769777	63791633	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001211	chr1	-	3059	2	NNC	ENSMUSG00000045005.10	novel	6915	2	NA	NA	0	57	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTTTTTTATAA	NA	False	NA	-3	True	AATATA	-16	NA	64776910	64773570	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_64776011_64776291
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001241	chr1	-	2296	9	FSM	ENSMUSG00000025950.17	ENSMUST00000169032.8	2283	9	-19	6	2	-6	multi-exon	FALSE	canonical	3	72	junction_8	288.761904516506	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGAAGTGTTTATTATG	NA	False	NA	-14	True	ATTAAA	-20	NA	65225657	65197782	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65225463
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001290	chr1	-	8317	46	FSM	ENSMUSG00000026193.16	ENSMUST00000055226.13	8315	46	3	-5	0	1	multi-exon	TRUE	canonical	3	1514	junction_37	371.719226311845	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGACGTCATTTCTTTTT	NA	False	NA	-5	True	AATAAA	-19	NA	71692331	71624677	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001302	chr1	-	6224	32	ISM	ENSMUSG00000026193.16	ENSMUST00000055226.13	8315	46	3	18573	0	0	5prime_fragment	FALSE	canonical	3	1514	junction_23	176.557054065451	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTTTAAGCAGATGTCAA	NA	False	NA	NA	False	NA	NA	NA	71692331	71643255	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_-_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001323	chr1	+	2559	21	FSM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	-8	-2	-8	2	multi-exon	FALSE	canonical	3	464	junction_5	74.8852455427636	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGTGTGAAGTCTCATT	314	False	NA	24	True	TATAAA	-30	NA	72346577	72434113	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001353	chr1	+	1281	1	NIC	ENSMUSG00000046330.11	novel	558	4	NA	NA	0	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAGTTCAGACTTTGAT	NA	False	NA	NA	False	NA	NA	NA	72750448	72751729	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_72750400_72751700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001355	chr1	+	902	4	NNC	ENSMUSG00000039323.19	novel	906	3	NA	NA	-663	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	1672.39096970641	39	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	627	False	NA	18	True	AATAAA	-3	NA	72862998	72891633	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_72863056_72888244_72888472_72888722_72888864_72891156
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001422	chr1	+	2195	13	ISM	ENSMUSG00000026177.12	ENSMUST00000027368.6	2315	15	1457	0	3	0	3prime_fragment	FALSE	canonical	2	4	junction_7	13.8774397254441	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAAGAGTTCTAGGTTA	6428	False	NA	NA	False	NA	NA	NA	74415818	74425221	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_+_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001455	chr1	-	1460	10	FSM	ENSMUSG00000026171.13	ENSMUST00000113721.8	1451	10	-8	-1	-8	1	multi-exon	FALSE	canonical	3	22	junction_3	27.6463557752974	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGCCTATGTGGTATGAC	NA	False	NA	NA	False	AATAAA	-26	NA	74640544	74632910	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_74633562_74633718_74633854_74634367_74634458_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001520	chr1	+	1514	8	FSM	ENSMUSG00000026201.13	ENSMUST00000027401.11	2876	8	0	1362	0	2	multi-exon	FALSE	canonical	3	167	junction_4	30.7265756142723	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTAGGTCAATGTGTCT	NA	False	NA	11	True	AATAAA	-19	NA	75187481	75190888	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001557	chr1	-	1840	15	FSM	ENSMUSG00000026209.16	ENSMUST00000185797.7	2510	15	2	668	2	1	multi-exon	FALSE	canonical	3	522	junction_14	119.683362013511	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGTGCTTTTTCTGAA	NA	False	NA	0	True	ATTAAA	-18	NA	75294301	75285207	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001584	chr1	+	1795	13	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	6	0	intron_retention	FALSE	canonical	3	82	junction_1	58.385869199852	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412617	75419817	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001589	chr1	-	3102	4	FSM	ENSMUSG00000032997.17_ENSMUSG00000026211.19	ENSMUST00000079205.14	2892	4	-210	0	-174	0	multi-exon	FALSE	canonical	3	112	junction_1	2.16024689946929	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTGGAAACTGGTAATTT	NA	False	NA	NA	False	AATAAA	-20	NA	75456125	75451212	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_75452871_75453203_75453384_75453888_75454463_75455435
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001615	chr1	-	3155	17	FSM	ENSMUSG00000026235.15	ENSMUST00000188797.7	3612	17	1	456	1	18	multi-exon	TRUE	canonical	3	112	junction_14	22.2548274257519	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCAGCGTTGCTTGGT	NA	False	NA	NA	False	ATTAAA	-34	NA	77491724	77350231	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001618	chr1	-	3184	17	NIC	ENSMUSG00000026235.15	novel	3612	17	NA	NA	1	18	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	40.9438926306476	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCAGCGTTGCTTGGT	NA	False	NA	NA	False	ATTAAA	-34	NA	77491724	77350231	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_77350485_77351378_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001630	chr1	-	2039	18	FSM	ENSMUSG00000026245.17	ENSMUST00000170217.8	2036	18	-2	-1	1	1	multi-exon	FALSE	canonical	3	22	junction_1	335.563627493931	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGGCTCTGCTACTATC	NA	False	NA	NA	False	AATAAA	-19	NA	78465498	78394610	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_78394860_78401829_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001634	chr1	-	1922	17	FSM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	13	16	13	1	multi-exon	FALSE	canonical	3	979	junction_9	154.241693455434	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGCGTAGCTGCATTAG	NA	False	NA	-1	True	AATAAA	-20	NA	78465521	78401720	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001652	chr1	+	3637	3	FSM	ENSMUSG00000079470.9	ENSMUST00000053760.12	7393	3	-155	3911	-155	17	multi-exon	FALSE	canonical	2	10	junction_2	87	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTGTCTTAAGAGAGCTG	NA	False	NA	16	True	NA	NA	NA	78635599	78645318	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_78635821_78640857_78640998_78642042
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001674	chr1	-	2026	9	FSM	ENSMUSG00000026249.11	ENSMUST00000027467.11	2210	9	60	124	-1	-124	multi-exon	FALSE	canonical	3	45	junction_4	6.12244844812923	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTCGCTGGACACCATTT	NA	False	NA	-5	True	AATAAA	-14	NA	79836353	79772037	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_79772760_79774542_79774627_79777184_79777272_79779172_79779274_79780563_79780763_79788270_79788469_79794444_79794673_79798993_79799275_79836227
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001717	chr1	+	2543	13	FSM	ENSMUSG00000026159.14	ENSMUST00000189220.7	8044	13	-10	5511	-10	-4	multi-exon	FALSE	canonical	3	119	junction_11	113.067826251915	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTATTGTTTTTGTGTT	NA	False	NA	11	True	AATAAA	-11	NA	82817193	82873392	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860901_82861083_82863831_82863909_82864095_82864189_82871144_82871304_82872202_82872289_82872719
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001739	chr1	+	879	4	NNC	ENSMUSG00000073633.10	novel	901	4	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	27.3536509852382	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGTGTTCTGGTTTGTA	NA	False	NA	NA	False	AATAAA	-13	NA	84817585	84878206	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_84817694_84858812_84858922_84874210_84874384_84877717
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001746	chr1	+	3821	9	FSM	ENSMUSG00000036707.17	ENSMUST00000113360.8	3805	9	-14	-2	-14	2	multi-exon	FALSE	canonical	3	335	junction_1	34.2579826463848	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGATGTCCTTTAGACAG	NA	False	NA	17	True	AATAAA	-18	NA	85721147	85779299	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_85721543_85746077_85746235_85763043_85763209_85765006_85765126_85769918_85770088_85772313_85772374_85775130_85775197_85775997_85776142_85776753
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001762	chr1	+	3257	25	FSM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	0	-145	0	145	multi-exon	FALSE	canonical	3	1352	junction_6	102.249660417801	363	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTAGTTGATTTGTTTT	NA	False	NA	26	True	AATAAA	-26	NA	85992340	86067018	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001819	chr1	+	1213	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-5	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9439.51567547297	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	45	True	AATAAA	-34	NA	86454442	86458422	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_86454673_86456894_86456967_86457177_86457279_86457452_86457527_86457686
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001830	chr1	+	3980	1	Genic_Genomic	ENSMUSG00000026238.15	novel	NA	NA	NA	NA	-5	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	45	True	AATAAA	-34	NA	86454442	86458422	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr1_+_86454400_86458400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001846	chr1	+	3816	2	NIC	ENSMUSG00000026238.15	novel	768	4	NA	NA	-4	-15	intron_retention	FALSE	canonical	3	24081	junction_1	0	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	42	True	AATAAA	-31	NA	86454443	86458419	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_86457527_86457686
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001857	chr1	+	2038	7	NIC	ENSMUSG00000026240.13	novel	5383	8	NA	NA	11	-65	combination_of_known_splicesites	FALSE	canonical	2	14	junction_1	132.540140670247	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTTGTGTCAATATTT	6018	False	NA	28	True	AATACA	-18	NA	86510636	86533983	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_86510819_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001881	chr1	-	913	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	-21	-1	-21	1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTTAACCTAATTAAACAG	NA	False	NA	NA	False	NA	NA	NA	86837426	86836513	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_86836500_86837400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001931	chr1	+	3944	23	FSM	ENSMUSG00000026288.15	ENSMUST00000170300.8	3942	23	-1	-1	-1	0	multi-exon	FALSE	canonical	3	151	junction_20	86.0654661453124	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCTCCTGACTGTGTG	9369	False	NA	15	True	AATAAA	-16	NA	87603959	87648225	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000001990	chr1	-	2203	2	FSM	ENSMUSG00000034486.9	ENSMUST00000036954.9	2135	2	-68	0	-68	0	multi-exon	FALSE	canonical	3	46	junction_1	0	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAGCTTAATCCTTGGGG	NA	False	NA	NA	False	AATAAA	-20	NA	89858969	89855677	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_89856866_89857954
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002001	chr1	+	2067	2	FSM	ENSMUSG00000092627.3	ENSMUST00000173856.2	1372	2	-8	-687	-8	687	multi-exon	FALSE	canonical	3	31	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGATTCTTTGAAGCTCTT	NA	False	NA	22	True	GATAAA	-29	NA	89857947	89860271	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_89858176_89858432
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002016	chr1	+	2020	2	FSM	ENSMUSG00000044337.6	ENSMUST00000065587.5	3065	2	18	1027	-8	-1027	multi-exon	FALSE	canonical	3	47	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCATGTGTGCTTTGGGTT	NA	False	NA	10	True	AATAAA	-18	NA	90131719	90143446	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_90131810_90141516
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002020	chr1	+	1816	8	FSM	ENSMUSG00000034432.12	ENSMUST00000036153.12	2287	8	471	0	-24	0	multi-exon	FALSE	canonical	3	708	junction_7	24.8185250100297	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTAGTGGGTTACCTAA	NA	False	NA	21	True	ATTAAA	-22	NA	90531173	90541063	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002030	chr1	+	2209	13	NIC	ENSMUSG00000026305.16	novel	2849	23	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	25.9117090649511	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGGTTTTGTTTTTTA	NA	False	NA	NA	False	AATGAA	-13	NA	90981175	91056666	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002057	chr1	+	193	1	Intergenic	novelGene_15	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTAGCTGCTGCCTCAG	NA	False	NA	NA	False	AAGAAA	-1	NA	91231402	91231595	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_91231400_91231600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002082	chr1	+	3500	14	NNC	ENSMUSG00000034292.14	novel	3474	15	NA	NA	12	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	15.1149442096734	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTGTATGGACTGTCAAA	8949	False	NA	5	True	ATTAAA	-21	NA	91422380	91457026	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_91422611_91425674_91425744_91427223_91427386_91428494_91428633_91428726_91429147_91433144_91433217_91435214_91435306_91447299_91447385_91447777_91447862_91448605_91448730_91448908_91448946_91450552_91450630_91453600_91453825_91455339
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002137	chr1	-	4420	28	NNC	ENSMUSG00000034088.16	novel	6231	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_21	111.527220837132	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	NA	False	NA	NA	False	AATAAA	-27	NA	93406537	93335483	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358024_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002161	chr1	+	3269	13	FSM	ENSMUSG00000116048.2	ENSMUST00000168776.8	3267	13	-2	0	-2	0	multi-exon	FALSE	canonical	3	67	junction_1	258.994798317564	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406780	93437455	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_93406903_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002165	chr1	+	1875	1	ISM	ENSMUSG00000026276.21	ENSMUST00000027495.15	3779	13	28895	527	2291	-527	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93435580	93437455	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_+_93435600_93437500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002189	chr1	+	1676	13	NIC	ENSMUSG00000026280.18	novel	513	6	NA	NA	6	8	combination_of_known_junctions	FALSE	canonical	2	16	junction_1	90.4551761309926	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAATTTCTGGGGCACTT	NA	False	NA	22	True	ATTAAA	-28	NA	93679227	93715909	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_93679304_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002194	chr1	+	3002	13	FSM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	-5	1176	-5	-1176	multi-exon	FALSE	canonical	3	280	junction_10	29.445217495093	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGTGTGTGTGTGTTGA	NA	False	NA	NA	False	GATAAA	-22	NA	93682621	93717156	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002240	chr1	+	504	2	Genic_Genomic	ENSMUSG00000081051.5	novel	531	1	NA	NA	-37	62	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATGGAACCAAGACATTAG	NA	False	NA	NA	False	NA	NA	NA	95426308	95426938	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr1_+_95426544_95426669
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002242	chr1	+	631	1	FSM	ENSMUSG00000081051.5	ENSMUST00000117288.2	531	1	-37	-63	-37	63	mono-exon	FALSE	NA	NA	NA	NA	NA	3444	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAACCAAGACATTAGT	NA	False	NA	NA	False	NA	NA	NA	95426308	95426939	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_95426300_95426900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002249	chr1	-	628	1	Antisense	novelGene_ENSMUSG00000081051.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGTTCCATCCTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	95426939	95426311	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr1_-_95426300_95426900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002266	chr1	+	275	1	Intergenic	novelGene_16	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAATCAAACTTAGAAAG	NA	False	NA	NA	False	ATTAAA	-39	NA	103095244	103095519	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_103095200_103095500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002289	chr1	-	2875	11	FSM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	32	1726	-29	-1726	multi-exon	TRUE	canonical	3	455	junction_4	35.0793386482699	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCTTTTATATGTTTT	56	False	NA	0	True	AGTAAA	-15	NA	106724426	106698885	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_106700279_106701736_106701878_106704999_106705220_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002298	chr1	+	202	1	Intergenic	novelGene_17	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGATATTTCAAATCCA	NA	False	NA	NA	False	NA	NA	NA	111824481	111824683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_111824500_111824700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002320	chr1	+	5333	15	FSM	ENSMUSG00000026380.11	ENSMUST00000027629.10	9269	15	-1	3937	0	-3937	multi-exon	FALSE	canonical	3	1477	junction_7	202.362891350955	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACAGGAGTGAGGGTTTC	NA	False	NA	NA	False	NA	NA	NA	118555674	118608961	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002327	chr1	+	2410	5	ISM	ENSMUSG00000026380.11	ENSMUST00000027629.10	9269	15	5	29530	5	17872	5prime_fragment	FALSE	canonical	3	1618	junction_3	162.015431363806	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAACAAAACCAATAACTAC	NA	False	NA	NA	False	NA	NA	NA	118555680	118583368	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002352	chr1	-	2129	5	NNC	ENSMUSG00000004451.15	novel	2289	5	NA	NA	216	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	456.372312372256	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTTCGCCCTTTTTCCTG	NA	False	NA	-7	True	AATAAA	-18	NA	119432308	119398037	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432247
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002371	chr1	-	3378	25	FSM	ENSMUSG00000026383.15	ENSMUST00000052404.13	6442	25	-17	3081	-17	13	multi-exon	FALSE	canonical	3	76	junction_7	8.61674322983393	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAATGTTAAAGTAGTACC	NA	False	NA	NA	False	NA	NA	NA	119576683	119475847	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002377	chr1	-	3321	2	FSM	ENSMUSG00000036975.6	ENSMUST00000037906.6	3341	2	20	0	20	0	multi-exon	FALSE	canonical	3	113	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCAGCCTTAAGTTTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	119840918	119835619	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_119838885_119840862
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002389	chr1	+	509	6	FSM	ENSMUSG00000026388.16	ENSMUST00000112644.9	488	6	-21	0	-13	0	multi-exon	FALSE	canonical	3	34	junction_1	7.2773621594641	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTGATTTATCTCTA	NA	False	NA	15	True	AATAAA	-16	NA	120048903	120115919	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_120048948_120078332_120078478_120088335_120088387_120093864_120093903_120099130_120099213_120115770
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002413	chr1	-	2249	13	FSM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	9	0	9	0	multi-exon	FALSE	canonical	3	390	junction_12	122.318232492135	467	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTATACCTTTCCCT	NA	False	NA	-16	True	CATAAA	-23	NA	121495709	121481563	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002421	chr1	-	2730	12	FSM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	-164	-1	-4	0	multi-exon	FALSE	canonical	3	2308	junction_6	123.717286351378	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATGGTTTTTCTTCGTGC	NA	False	NA	-3	True	AATAAA	-21	NA	125363448	125320641	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002450	chr1	+	1030	5	FSM	ENSMUSG00000026349.15	ENSMUST00000149760.8	1040	5	38	-28	38	28	multi-exon	FALSE	canonical	3	475	junction_4	23.7539470404394	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTTTGGAAAGCAAGCCC	NA	False	NA	NA	False	NA	NA	NA	127701938	127723565	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002479	chr1	+	526	1	FSM	ENSMUSG00000058603.11	ENSMUST00000121497.2	414	1	-47	-65	-47	65	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCCATGTCAATTCTGTC	NA	False	NA	NA	False	AATAAA	-42	NA	127966258	127966784	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_127966300_127966800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002489	chr1	+	2319	13	FSM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	8	1786	8	572	multi-exon	FALSE	canonical	3	326	junction_2	38.8918550456119	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGATCTTATTTTTG	102	False	NA	14	True	AATAAA	-17	NA	128171906	128205329	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002502	chr1	-	2984	17	FSM	ENSMUSG00000026355.12	ENSMUST00000027601.11	2910	17	-58	-16	-58	16	multi-exon	FALSE	canonical	3	2842	junction_6	235.478734443261	1353	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACTCTTGATTATTGC	NA	False	NA	-5	True	AATAAA	-33	NA	128287459	128259310	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002570	chr1	-	2159	3	FSM	ENSMUSG00000016526.9	ENSMUST00000016670.9	3164	3	19	986	19	-986	multi-exon	FALSE	canonical	3	221	junction_1	9	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATTGTTTTCATTCTCA	256	False	NA	-3	True	ATTAAA	-19	NA	131066058	131056177	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_131057983_131063996_131064109_131065816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002574	chr1	+	2051	15	FSM	ENSMUSG00000026427.17	ENSMUST00000068805.14	2009	15	-22	-20	-22	20	multi-exon	FALSE	canonical	3	546	junction_5	43.4650340351123	348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGAATCGCTCTTCTGTTT	NA	False	NA	61	True	AATAAA	-42	NA	131080895	131101235	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002605	chr1	+	3545	13	FSM	ENSMUSG00000042251.13	ENSMUST00000112393.9	6900	13	8	3347	8	1738	multi-exon	FALSE	canonical	3	56	junction_3	6.31741420378799	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGGTATTGTGTTCTTG	NA	False	NA	3	True	AATAAA	-16	NA	131725126	131745852	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_131725325_131726333_131726421_131728831_131729065_131729463_131729551_131730038_131730173_131730457_131730578_131731789_131731866_131732324_131732387_131732630_131732710_131734636_131734709_131739772_131739942_131741628_131741729_131743724
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002614	chr1	+	4660	11	FSM	ENSMUSG00000013275.10	ENSMUST00000086559.7	4697	11	35	2	35	-2	multi-exon	FALSE	canonical	3	130	junction_4	13.4402380931292	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTATCCCTGTGTGT	5237	False	NA	21	True	AATAAA	-18	NA	131755749	131776601	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_131756132_131757748_131758729_131766852_131766961_131767914_131767987_131768592_131768738_131768865_131769013_131769722_131769871_131770686_131770767_131771656_131771792_131772075_131772225_131774287
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002644	chr1	+	3000	5	NNC	ENSMUSG00000026435.16	novel	3212	5	NA	NA	-17	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	14.0534693225552	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTGATATGTGTTTGTC	NA	False	NA	NA	False	ATTAAA	-15	NA	131890687	131910699	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_131890791_131904455_131904851_131905150_131905937_131906706_131906752_131909028
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002660	chr1	-	2895	15	NIC	ENSMUSG00000026437.12	novel	4355	16	NA	NA	0	932	intron_retention	FALSE	canonical	2	6	junction_3	40.998257802706	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTGAGCAGTCTCATTCA	597	False	NA	-2	True	AATATA	-23	NA	132067422	132041391	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_132042709_132043202_132043281_132043599_132043691_132044333_132044440_132044621_132044720_132045219_132045341_132045487_132045612_132046258_132046322_132046587_132046683_132046837_132046953_132047705_132047763_132049185_132049312_132049774_132049855_132050049_132050199_132067147
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002667	chr1	-	2875	16	NNC	ENSMUSG00000026437.12	novel	4355	16	NA	NA	0	932	intron_retention	FALSE	canonical	2	6	junction_10	39.7600581264945	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTGAGCAGTCTCATTCA	597	False	NA	-2	True	AATATA	-23	NA	132067422	132041391	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_132042709_132043202_132043281_132043599_132043691_132044184_132044228_132044333_132044440_132044621_132044720_132045219_132045341_132045487_132045612_132046258_132046322_132046587_132046620_132046837_132046953_132047705_132047763_132049185_132049312_132049774_132049855_132050049_132050199_132067147
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002675	chr1	-	596	5	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	1954	6210	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	39.6169155790806	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCCTTCTTAATTTCGAG	NA	False	NA	2	True	AATAAA	-20	NA	132206195	132196243	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_132196405_132196619_132196718_132202453_132202560_132202761_132202875_132206077
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002727	chr1	+	2284	8	FSM	ENSMUSG00000070644.14	ENSMUST00000135222.9	2297	8	-5	18	-5	2	multi-exon	FALSE	canonical	3	61	junction_5	9.79379228628721	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGGTCTTGGAAGGACAGT	NA	False	NA	7	True	ATTAAA	-17	NA	133291304	133308056	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_133291757_133293313_133293574_133296487_133296611_133300872_133301016_133302264_133302349_133304643_133304790_133306186_133306261_133307054
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002759	chr1	-	2825	18	FSM	ENSMUSG00000102976.7	ENSMUST00000191896.6	4396	18	-62	1633	0	-1633	multi-exon	FALSE	canonical	3	129	junction_16	96.2094744595279	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTCACCAAAAACTGGACT	NA	False	NA	NA	False	NA	NA	NA	133589118	133549232	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588974
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002760	chr1	-	2806	18	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	0	-1633	combination_of_known_junctions	FALSE	canonical	3	78	junction_17	104.361959952471	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTCACCAAAAACTGGACT	NA	False	NA	NA	False	NA	NA	NA	133589118	133549232	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588993
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002766	chr1	-	2771	17	FSM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	0	1624	0	-1624	multi-exon	FALSE	canonical	3	37	junction_16	98.6493157604248	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTCACCAAAAACTGGACT	NA	False	NA	NA	False	NA	NA	NA	133589118	133549232	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133588974
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002788	chr1	-	2584	2	FSM	ENSMUSG00000020423.7	ENSMUST00000020692.7	2743	2	-1	160	-1	-160	multi-exon	FALSE	canonical	3	77	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGTGTAGAGAAGGTGGA	NA	False	NA	-10	True	AATAAA	-17	NA	134006859	134003067	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_134005442_134006649
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002804	chr1	-	3286	9	NNC	ENSMUSG00000042305.13	novel	1689	9	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	283.900923519104	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGCTCAACTTGTGAGT	NA	False	NA	-9	True	AATAAA	-16	NA	134289687	134273834	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_134275933_134277820_134277977_134280088_134280174_134280712_134280876_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002816	chr1	+	196	1	Intergenic	novelGene_18	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTATTAAGCCTGATGTC	8104	False	NA	NA	False	NA	NA	NA	134284709	134284905	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_134284700_134284900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002857	chr1	+	3259	12	FSM	ENSMUSG00000026455.15	ENSMUST00000027725.11	3408	12	2	147	2	-2	multi-exon	TRUE	canonical	3	104	junction_1	24.9889231659096	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTTTAAGAGAATTTGTG	NA	False	NA	15	True	ATTAAA	-16	NA	134383270	134418609	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_134383404_134386203_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002864	chr1	+	2884	2	FSM	ENSMUSG00000042229.10	ENSMUST00000047978.9	2861	2	-23	0	-23	0	multi-exon	FALSE	canonical	3	479	junction_1	0	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCTGGCGAGATGGCTCA	6615	False	NA	NA	False	ATTAAA	-13	NA	134422362	134436512	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_134422548_134433813
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002890	chr1	+	1122	7	FSM	ENSMUSG00000026429.10	ENSMUST00000027687.8	1116	7	12	-18	12	18	multi-exon	FALSE	canonical	3	373	junction_1	158.492902049272	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTGTCTGGGAGTGAACT	NA	False	NA	33	True	AATAAA	-35	NA	134890314	134901918	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_134890525_134895464_134895637_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000002964	chr1	-	177	1	Intergenic	novelGene_19	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAAGTGGACAGAG	6919	False	NA	NA	False	NA	NA	NA	135271025	135270848	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_-_135270800_135271000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003010	chr1	+	1583	6	FSM	ENSMUSG00000026411.18	ENSMUST00000117950.2	847	6	0	-736	0	248	multi-exon	FALSE	canonical	2	15	junction_1	164.577519728546	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGCAGATCTCAAGGGA	NA	False	NA	22	True	ATTAAA	-17	NA	135945799	135962766	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_135945987_135946243_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003019	chr1	-	2807	10	FSM	ENSMUSG00000041605.17	ENSMUST00000120339.8	2988	10	191	-10	46	10	multi-exon	TRUE	canonical	3	39	junction_9	8.93736780097342	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTGTGTGCTGAGTT	NA	False	NA	-3	True	AATAAA	-30	NA	136161811	136141258	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_136142157_136143493_136144179_136147460_136147635_136147868_136148080_136148809_136148864_136153073_136153297_136153889_136154007_136154517_136154643_136155251_136155401_136161640
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003027	chr1	+	2146	8	FSM	ENSMUSG00000026404.13	ENSMUST00000027655.8	2166	8	24	-4	24	4	multi-exon	FALSE	canonical	3	59	junction_1	8.75750407085377	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTTCAGTCCTTGTA	NA	False	NA	14	True	AATAAA	-20	NA	136343032	136367900	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136362243_136362373_136367490
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003038	chr1	+	3730	20	NNC	ENSMUSG00000041498.14	novel	8943	29	NA	NA	-88	7565	intron_retention	FALSE	canonical	0	0	junction_9	15.7242512560162	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTATGTGTGGTTTGCCT	NA	False	NA	NA	False	ATTAAA	-28	NA	136395584	136431219	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_136396913_136399057_136399313_136401122_136401211_136404077_136404177_136406096_136406150_136406881_136406913_136407545_136407654_136410125_136410243_136410661_136410782_136414009_136414183_136414772_136414921_136415141_136415206_136417937_136418123_136422365_136422469_136423593_136423758_136424307_136424456_136425100_136425254_136427754_136427882_136430384_136430479_136431047
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003067	chr1	-	218	1	Intergenic	novelGene_20	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTTTAAAGTAAAACTT	NA	False	NA	NA	False	NA	NA	NA	138778010	138777792	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_-_138777800_138778000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003112	chr1	+	1625	13	NNC	ENSMUSG00000006005.19	novel	7430	52	NA	NA	-41	-3923	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	181.231129285844	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTAATAAGTATCTGGAT	NA	False	NA	NA	False	AATAAA	-2	NA	150268547	150285791	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_150268765_150269106_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279457_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003125	chr1	+	3566	15	FSM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	-30	-25	-30	25	multi-exon	TRUE	canonical	3	1145	junction_2	98.7764172879585	645	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGTCACTCAGTTCATT	NA	False	NA	42	True	AGTAAA	-30	NA	151220197	151240198	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003145	chr1	-	2939	20	FSM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	84	665	65	0	multi-exon	FALSE	canonical	3	144	junction_7	20.5845328266092	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTTCATAGATACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	151304122	151244114	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003146	chr1	-	2157	18	NIC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	103	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_14	42.2765651215601	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTTCATAGATACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	151304084	151244114	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151295850_151295935_151297784_151297872_151299257_151299357_151304047
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003153	chr1	+	2784	15	FSM	ENSMUSG00000053286.12	ENSMUST00000065625.12	2749	15	-13	-22	-13	22	multi-exon	FALSE	canonical	3	148	junction_10	24.5323609686038	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTGTTCACATGTCTTT	NA	False	NA	37	True	AATAAA	-38	NA	151304279	151333934	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003164	chr1	+	2461	15	NIC	ENSMUSG00000053286.12	novel	2749	15	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	47.2939138337512	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304408	151333912	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_151304682_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003203	chr1	-	5667	22	NIC	ENSMUSG00000042772.16	novel	5767	22	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	176	junction_5	39.6466250175655	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCGGTGTGTAGAGGATTT	NA	False	NA	-3	True	ATTAAA	-19	NA	152778411	152712745	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003230	chr1	-	2337	7	NNC	ENSMUSG00000026479.14	novel	4916	23	NA	NA	-4596	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	44.5570794973519	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTGAGTTTCTGATTTTA	NA	False	NA	-3	True	AATAAA	-17	NA	153007576	152998503	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702_153004903_153005781_153005897_153006395_153006546_153007489
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003254	chr1	-	4605	28	FSM	ENSMUSG00000042699.12	ENSMUST00000042141.12	4616	28	9	2	0	-2	multi-exon	FALSE	canonical	3	83	junction_24	29.9642219210858	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTGTGTCATTGATGTT	NA	False	NA	-3	True	AATAAA	-16	NA	153363397	153331505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_153332500_153333276_153333478_153333798_153333915_153334005_153334236_153335083_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003322	chr1	+	5087	5	FSM	ENSMUSG00000050565.17	ENSMUST00000060404.5	5135	5	0	48	0	-48	multi-exon	FALSE	canonical	3	13	junction_1	13.683932183404	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGACTGATTTTTTACTAA	NA	False	NA	3	True	AATAAA	-15	NA	155916635	155944559	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_155916749_155935156_155935334_155937333_155937916_155939338_155939441_155940446
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003328	chr1	+	505	1	FSM	ENSMUSG00000078193.3	ENSMUST00000102782.4	445	1	-2	-58	-2	58	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAGACAGTGGGTGAGGA	NA	False	NA	NA	False	NA	NA	NA	156193607	156194112	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_156193600_156194100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003340	chr1	-	3273	6	FSM	ENSMUSG00000060519.12	ENSMUST00000079625.11	3285	6	17	-5	-4	5	multi-exon	FALSE	canonical	3	42	junction_5	7.96492310069595	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTCCTTTGTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	156501909	156481181	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_156483514_156484041_156484167_156494168_156494348_156496940_156497207_156501099_156501217_156501655
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003350	chr1	+	221	1	Intergenic	novelGene_21	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAAGTGTTAGCCGGGCGT	NA	False	NA	NA	False	ATTAAA	-11	NA	156540055	156540276	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_156540100_156540300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003355	chr1	-	2946	19	FSM	ENSMUSG00000026594.15	ENSMUST00000027886.14	4237	19	-65	1356	0	0	multi-exon	FALSE	canonical	3	179	junction_5	32.038605185342	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTCTTGTATGACTTCA	NA	False	NA	-31	True	AATAAA	-38	NA	156767178	156635685	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003370	chr1	+	198	1	Intergenic	novelGene_22	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGGCGCAAGTGAGTTCC	NA	False	NA	NA	False	NA	NA	NA	157052863	157053061	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_157052900_157053100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003390	chr1	+	2253	2	ISM	ENSMUSG00000058267.14	ENSMUST00000135680.8	2999	3	41	3028	41	-670	5prime_fragment	FALSE	canonical	3	2655	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGCTGTTAGCCAGTGCC	NA	False	NA	NA	False	GATAAA	-27	NA	160022825	160026712	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_+_160022882_160024515
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003412	chr1	+	503	12	FSM	ENSMUSG00000053332.14	ENSMUST00000162558.8	502	12	1	-2	1	0	multi-exon	TRUE	canonical	3	1206	junction_7	1656.43137771865	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862733	160866109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003415	chr1	+	490	11	NNC	ENSMUSG00000053332.14	novel	502	12	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1939.64689827814	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862733	160866109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864693_160864735_160865059_160865118_160865564_160865608_160865794_160865843_160866026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003416	chr1	+	897	10	NIC	ENSMUSG00000053332.14	novel	502	12	NA	NA	1	0	intron_retention	FALSE	canonical	3	3085	junction_6	967.274955483792	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862733	160866109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003417	chr1	+	462	11	FSM	ENSMUSG00000053332.14	ENSMUST00000159706.8	557	11	97	-2	1	0	multi-exon	FALSE	canonical	3	3085	junction_7	1053.46856146731	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862733	160866109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003435	chr1	+	3376	1	FSM	ENSMUSG00000065160.3	ENSMUST00000083226.3	84	1	-2192	-1100	-2192	1100	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862733	160866109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_160862700_160866100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003439	chr1	+	420	9	NNC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2269.71826445486	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864389_160864427_160865059_160865118_160865564_160865608_160865794_160865843_160866026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003440	chr1	+	805	11	FSM	ENSMUSG00000053332.14	ENSMUST00000161461.8	793	11	-12	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_6	1709.07735342787	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003441	chr1	+	457	10	NNC	ENSMUSG00000053332.14	novel	793	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2280.88639906333	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864389_160864423_160864693_160864735_160865059_160865118_160865564_160865608_160865794_160865843_160866026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003443	chr1	+	764	10	FSM	ENSMUSG00000053332.14	ENSMUST00000160429.8	759	10	0	-5	0	0	multi-exon	FALSE	canonical	3	3085	junction_6	1099.1542202985	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003444	chr1	+	346	8	FSM	ENSMUSG00000053332.14	ENSMUST00000159663.8	346	8	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_6	1912.24889508	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865794_160865843_160866026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003445	chr1	+	1439	8	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_4	1075.75672464189	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003457	chr1	+	425	10	NIC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	388	junction_4	1715.49943776955	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTGTGAAGTGTGCATT	NA	False	NA	18	True	ATTAAA	-14	NA	160862735	160866105	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003475	chr1	+	2174	6	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_2	965.198922502507	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_160863585_160863777_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003477	chr1	+	2367	5	Fusion	ENSMUSG00000064816.3_ENSMUSG00000053332.14_ENSMUSG00000064440.3	novel	403	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_1	944.775105514535	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr1_+_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003510	chr1	-	1507	5	FSM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	-12	892	-12	11	multi-exon	FALSE	canonical	3	1689	junction_3	62.8823305865805	943	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCATGTTTTAAAGTACTAC	NA	False	NA	0	True	AATAAA	-21	NA	161078801	161068573	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078591
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003517	chr1	-	1295	4	FSM	ENSMUSG00000026701.16	ENSMUST00000192639.6	1294	4	5	-6	5	6	multi-exon	FALSE	canonical	3	42	junction_3	831.771736849854	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTGTCATGTTTTAAAGT	NA	False	NA	-5	True	AATAAA	-16	NA	161078751	161068578	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161078591
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003546	chr1	+	1047	1	ISM	ENSMUSG00000026696.16	ENSMUST00000132158.8	2752	8	27521	2	23215	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGCACTGTGGCTTGTTC	NA	False	NA	71	True	AATAAA	-22	NA	162425604	162426651	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_+_162425600_162426700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003548	chr1	-	2001	12	ISM	ENSMUSG00000040225.16	ENSMUST00000182660.8	11502	35	4	39635	-2	5	5prime_fragment	FALSE	canonical	3	34	junction_3	3.27777388678544	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAAAAAGTTGAACCCCA	3418	False	NA	NA	False	NA	NA	NA	162568121	162537930	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_-_162538399_162540872_162540927_162541811_162541957_162542960_162543049_162543154_162543289_162543847_162543931_162546258_162546480_162548049_162548176_162548998_162549109_162550678_162550857_162552272_162552439_162567893
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003550	chr1	-	1990	12	ISM	ENSMUSG00000040225.16	ENSMUST00000028016.16	8815	35	3	36960	3	5	5prime_fragment	FALSE	canonical	3	17	junction_10	7.31126155013931	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAAAAAGTTGAACCCCA	3423	False	NA	NA	False	NA	NA	NA	162568116	162537930	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_-_162538399_162540872_162540927_162541811_162541957_162542960_162543049_162543154_162543289_162543847_162543931_162546258_162546480_162548049_162548176_162548998_162549109_162550678_162550851_162552272_162552439_162567893
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003561	chr1	+	192	1	Intergenic	novelGene_23	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGGTGAATTTTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	162607947	162608139	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_162607900_162608100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003566	chr1	-	2544	5	FSM	ENSMUSG00000040124.6	ENSMUST00000045138.6	2538	5	-6	0	-6	0	multi-exon	FALSE	canonical	3	58	junction_3	10.1827059272082	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATGGTCTGTCATTTAA	NA	False	NA	-1	True	AATAAA	-18	NA	163231244	163212476	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_163214267_163219978_163220120_163222159_163222262_163224380_163224739_163231091
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003588	chr1	+	1514	2	FSM	ENSMUSG00000041396.14	ENSMUST00000045694.14	1513	2	-3	2	-3	-2	multi-exon	FALSE	canonical	3	49	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTGACTGTTCAATTT	NA	False	NA	7	True	AATAAA	-14	NA	163822454	163824810	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_163822641_163823482
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003596	chr1	+	3572	6	FSM	ENSMUSG00000040918.13	ENSMUST00000044021.12	3571	6	-13	12	-13	4	multi-exon	FALSE	canonical	3	256	junction_3	19.417517864032	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTTTCACTCAGAATTAT	NA	False	NA	17	True	AATAAA	-19	NA	164076601	164092942	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_164077026_164084315_164084919_164088360_164088587_164089615_164089809_164090188_164090331_164090958
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003619	chr1	+	1737	14	FSM	ENSMUSG00000026575.16	ENSMUST00000193683.6	1740	14	3	0	3	0	multi-exon	FALSE	canonical	3	68	junction_2	20.0017750691572	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	164135243	164264869	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_164135324_164135628_164135820_164140421_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003635	chr1	-	2585	6	NNC	ENSMUSG00000026576.13	novel	2580	6	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_2	491.477608849071	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACGTGTGTGACTCGATT	NA	False	NA	-16	True	AATAAA	-16	NA	164285925	164264677	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_164266109_164266867_164266952_164269021_164269211_164270763_164270920_164281057_164281187_164285329
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003638	chr1	-	2584	6	NNC	ENSMUSG00000026576.13	novel	2580	6	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_4	498.19835407195	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACGTGTGTGACTCGATT	NA	False	NA	-16	True	AATAAA	-16	NA	164285925	164264677	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_164266109_164266867_164266952_164269025_164269211_164270763_164270909_164281043_164281187_164285329
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003662	chr1	-	2336	6	FSM	ENSMUSG00000026566.16	ENSMUST00000111435.9	2285	6	-50	-1	-41	1	multi-exon	TRUE	canonical	3	372	junction_2	205.630737002035	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTTGTCTGCTTGTTTTT	NA	False	NA	0	True	AATACA	-20	NA	165462148	165419807	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_165421247_165429318_165429425_165432178_165432312_165433177_165433392_165436006_165436174_165461871
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003678	chr1	-	2532	3	NNC	ENSMUSG00000040723.15	novel	5001	6	NA	NA	51020	2	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	12	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGTTGGTTCTTATTCTGA	NA	False	NA	0	True	AATAAA	-13	NA	165484597	165476513	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_165477780_165482873_165483606_165484063
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003688	chr1	+	2158	4	FSM	ENSMUSG00000040713.13	ENSMUST00000111432.10	2163	4	5	0	5	0	multi-exon	FALSE	canonical	3	459	junction_1	24.0554914035583	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGACTGATTTCTG	NA	False	NA	NA	False	ATTAAA	-18	NA	165591319	165602877	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_165591708_165597381_165597502_165598200_165598386_165601412
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003692	chr1	-	2614	16	FSM	ENSMUSG00000026565.19	ENSMUST00000160908.8	2591	16	-12	-11	-5	11	multi-exon	FALSE	canonical	3	10	junction_7	5.03940031705713	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGACAGACAAAACTAAGTG	9689	False	NA	33	True	NA	NA	NA	165830203	165703014	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_165703618_165704545_165704635_165707698_165708045_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003695	chr1	-	2683	17	FSM	ENSMUSG00000026565.19	ENSMUST00000160260.9	13022	17	47	10292	-2	11	multi-exon	FALSE	canonical	2	8	junction_3	5.36153837531729	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGACAGACAAAACTAAGTG	9692	False	NA	33	True	NA	NA	NA	165830200	165703014	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_165703618_165704545_165704635_165707698_165708045_165710615_165710688_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003710	chr1	-	3929	5	ISM	ENSMUSG00000026564.10	ENSMUST00000085992.4	4018	6	680	-3	680	-2	3prime_fragment	FALSE	canonical	3	43	junction_3	2.77263412660235	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTTCATTCTGGTCAT	NA	False	NA	-3	True	ATTAAA	-17	NA	165954785	165925718	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_-_165928956_165935541_165935760_165937620_165937853_165939599_165939695_165954638
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003727	chr1	+	2256	8	FSM	ENSMUSG00000026563.14	ENSMUST00000027846.8	2215	8	-41	0	-41	0	multi-exon	FALSE	canonical	3	160	junction_4	12.2357789173508	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTTCCTGTTTATTCAA	NA	False	NA	15	True	AATAAA	-15	NA	166206624	166221190	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_166207046_166209695_166209788_166209965_166210032_166214234_166214333_166216130_166216341_166217404_166217557_166219391_166219555_166220136
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003742	chr1	+	1303	7	FSM	ENSMUSG00000052428.11	ENSMUST00000195015.6	1573	7	272	-2	-20	2	multi-exon	FALSE	canonical	3	491	junction_3	23.6108496717552	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTCTCCTGTTCAAAAT	NA	False	NA	17	True	AATAAA	-24	NA	167136218	167158356	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_167136503_167136874_167136953_167141675_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003749	chr1	+	2391	11	FSM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	199	245	-46	-245	multi-exon	FALSE	canonical	3	593	junction_2	45.3586816386896	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTTTCTGTCCTTT	NA	False	NA	17	True	AATAAA	-14	NA	167177758	167195856	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003806	chr1	-	1298	6	FSM	ENSMUSG00000026659.14	ENSMUST00000027970.14	1374	6	78	-2	-5	2	multi-exon	FALSE	canonical	3	209	junction_3	62.7917191992702	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTGTTAGATGGTTTAA	NA	False	NA	0	True	ATTAAA	-18	NA	170713031	170701754	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708598_170712635
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003822	chr1	-	1137	5	ISM	ENSMUSG00000058076.13	ENSMUST00000111336.10	3171	6	4782	1998	4767	244	3prime_fragment	FALSE	canonical	3	865	junction_4	43.5344691020805	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGACTCTTTGGAATCTA	5238	False	NA	-5	True	ATTAAA	-17	NA	170973390	170956731	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003824	chr1	-	1008	5	NIC	ENSMUSG00000058076.13	novel	3171	6	NA	NA	0	243	combination_of_known_splicesites	TRUE	canonical	3	17	junction_1	373.85324660888	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGACTCTTTGGAATCT	456	False	NA	-6	True	ATTAAA	-16	NA	170978172	170956732	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_170957475_170966262_170966325_170971126_170971229_170973324_170973382_170978127
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003841	chr1	+	560	4	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3186	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	24.4176620957499	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTTGTGTCTTTGGGT	NA	False	NA	16	True	AATAAA	-22	NA	171049436	171053947	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_171049548_171052855_171052936_171053234_171053368_171053711
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003857	chr1	+	2684	1	NIC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	3	410	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTAAGTTTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	171097900	171100584	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_171097900_171100600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003868	chr1	-	3315	9	NIC	ENSMUSG00000062729.13	novel	3043	11	NA	NA	-1	1	intron_retention	TRUE	canonical	3	87	junction_7	17.1386806668425	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTCTTTACTATTCATC	5188	False	NA	-14	True	AGTAAA	-17	NA	171108761	171104563	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171106888_171107003_171108097_171108247_171108343_171108446
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003900	chr1	+	2284	1	Intergenic	novelGene_24	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCGTTTCTTGTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	171139985	171142269	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_171140000_171142300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000003943	chr1	+	684	4	FSM	ENSMUSG00000006412.11	ENSMUST00000006579.5	885	4	-31	232	29	200	multi-exon	FALSE	canonical	3	27	junction_3	957.822994550083	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATAGCCTGAACCTTTAT	NA	False	NA	29	True	NA	NA	NA	171173266	171185738	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185355
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004002	chr1	-	2907	18	FSM	ENSMUSG00000003458.13	ENSMUST00000140643.8	3016	18	102	7	102	-7	multi-exon	FALSE	canonical	3	15	junction_16	166.01196438311	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTACTTGTTGTTTGGT	9098	False	NA	43	True	ATTAAA	-14	NA	171910260	171893586	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171903192_171903308_171908778_171908884_171910167
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004089	chr1	-	2426	4	FSM	ENSMUSG00000013698.13	ENSMUST00000013842.12	2501	4	73	2	-34	-2	multi-exon	FALSE	canonical	3	108	junction_1	8.37987005998436	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCTGACTGATTCTAGAAT	NA	False	NA	-6	True	AATAAA	-18	NA	172034298	172024296	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_172026258_172026677_172026834_172027974_172028149_172034163
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004094	chr1	-	3453	23	FSM	ENSMUSG00000007097.15	ENSMUST00000085913.11	6227	23	0	2774	0	60	multi-exon	FALSE	canonical	3	93	junction_19	23.4067518690196	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACTCTGCTACATTTTC	NA	False	NA	-2	True	NA	NA	NA	172125631	172102049	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_172102297_172103484_172103577_172103687_172103790_172105823_172105955_172106101_172106248_172106437_172106562_172106879_172107035_172107234_172107404_172107502_172107654_172108135_172108273_172112066_172112243_172112335_172112526_172113220_172113356_172113530_172113641_172113764_172113964_172114766_172115036_172116867_172116986_172117819_172117955_172118177_172118292_172118759_172118964_172120893_172120954_172121138_172121244_172125447
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004143	chr1	-	461	2	FSM	ENSMUSG00000026544.7	ENSMUST00000027826.7	1410	2	74	875	74	-875	multi-exon	FALSE	canonical	1	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCAACAGCCCGCCTTTC	NA	False	NA	NA	False	NA	NA	NA	172460455	172459205	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_172459394_172460182
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004166	chr1	-	1607	10	NNC	ENSMUSG00000026526.15	novel	2636	10	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	278.865337651007	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTTTTTAAAATTTAATT	821	False	NA	-16	True	AATAAA	-37	NA	175453172	175428943	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_175429133_175431503_175431658_175433620_175433749_175435378_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004191	chr1	+	2795	15	NNC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_10	119.760155719501	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	9766	False	NA	6	True	AATAAA	-14	NA	175708359	175736299	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723734_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004204	chr1	-	2590	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	-33	214	-33	0	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	-3	True	ATTAAA	-22	NA	177624110	177590741	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004227	chr1	-	3679	14	NNC	ENSMUSG00000039630.11	novel	7640	14	NA	NA	9	-3467	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1684.88355434908	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGTTTGGGATTCTCGC	NA	False	NA	-21	True	AATAAA	-15	NA	178165353	178155863	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_178156973_178157432_178157505_178157729_178157912_178158152_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004235	chr1	-	3404	14	NNC	ENSMUSG00000039630.11	novel	7640	14	NA	NA	9	3298	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1687.12771918086	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTGTCTAATGGGATC	NA	False	NA	-5	True	ATTAAA	-16	NA	178165353	178156132	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_178156973_178157434_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004251	chr1	-	1411	7	ISM	ENSMUSG00000055067.16	ENSMUST00000068437.13	3360	9	154438	1760	-105057	444	3prime_fragment	FALSE	canonical	3	343	junction_1	12.7758452644912	321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCCTCCATTTATTTT	NA	False	NA	NA	False	AATACA	-31	NA	178921967	178784370	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_-_178785128_178799752_178799862_178871301_178871477_178877855_178877944_178913888_178914000_178920430_178920534_178921899
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004262	chr1	+	4658	11	FSM	ENSMUSG00000038949.9	ENSMUST00000040706.9	4709	11	51	0	51	0	multi-exon	FALSE	canonical	3	32	junction_8	8.09691299199886	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTCCGAGAATTTATTTG	NA	False	NA	NA	False	TTTAAA	-17	NA	179373985	179455043	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_179374182_179406902_179407334_179420249_179420432_179429266_179429298_179432083_179432171_179432517_179432633_179433812_179433835_179434001_179434099_179437350_179438232_179450331_179450468_179452563
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004280	chr1	-	2628	15	FSM	ENSMUSG00000026489.14	ENSMUST00000027766.13	4026	15	23	1375	-16	406	multi-exon	FALSE	canonical	3	14	junction_5	4.06390281902126	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTATGCGTTCCGTGAAT	3888	False	NA	-1	True	AATAAA	-23	NA	180023562	179994177	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_179995022_179995886_179995974_179996135_179996202_179996337_179996446_179996644_179996787_179996980_179997075_179997197_179997280_179997626_179997768_179997907_179997994_179999128_179999252_180001815_180001891_180006141_180006209_180006447_180006850_180009626_180009813_180023437
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004284	chr1	-	1941	11	FSM	ENSMUSG00000010609.16	ENSMUST00000111108.10	1997	11	56	0	0	0	multi-exon	FALSE	canonical	2	16	junction_10	6.79411510058521	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGTGTTTGGCCCCTTT	NA	False	NA	2	True	AATAAA	-19	NA	180083809	180054568	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_180055294_180056407_180056527_180056950_180057053_180057406_180057491_180061175_180061275_180062553_180062775_180063475_180063544_180066437_180066580_180068295_180068511_180073178_180073323_180083787
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004321	chr1	+	2979	15	FSM	ENSMUSG00000058729.14	ENSMUST00000192561.6	3160	15	181	0	-3	0	multi-exon	FALSE	canonical	3	75	junction_1	15.1320716307033	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	9	True	AATAAA	-19	NA	180468895	180518252	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_180468963_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004325	chr1	+	3044	16	NNC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	31.7940595429747	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	9	True	AATAAA	-19	NA	180468906	180518252	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_180468963_180469481_180469558_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004340	chr1	-	1037	4	FSM	ENSMUSG00000060743.13	ENSMUST00000161308.8	2841	4	71	1733	-14	132	multi-exon	TRUE	canonical	3	2337	junction_3	156.5907617539	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTCTGGTCTTTATTA	NA	False	NA	NA	False	ATTAAA	-16	NA	180641126	180630129	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_180630771_180637681_180637836_180639363_180639515_180641035
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004357	chr1	-	2327	1	Antisense	novelGene_ENSMUSG00000066652.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGTGTTTTTATTATC	NA	False	NA	NA	False	TATAAA	-8	NA	180721990	180719663	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr1_-_180719700_180722000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004362	chr1	+	2803	4	FSM	ENSMUSG00000066652.6	ENSMUST00000085797.6	2473	4	-16	-314	-16	314	multi-exon	FALSE	canonical	3	1148	junction_3	71.1071179434395	467	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCAGTGTCTGTTTATT	NA	False	NA	24	True	NA	NA	NA	180720656	180726982	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004398	chr1	-	1713	9	FSM	ENSMUSG00000038776.14	ENSMUST00000036928.12	1741	9	29	-1	29	1	multi-exon	FALSE	canonical	3	106	junction_5	19.7214984217731	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGGGCCAGATACCTTG	5757	False	NA	-2	True	GATAAA	-19	NA	180845105	180817117	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_180817546_180817957_180818084_180819497_180819607_180821443_180821653_180822192_180822323_180823513_180823742_180827287_180827469_180829363_180829552_180844991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004401	chr1	-	3728	23	FSM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	0	5664	0	457	multi-exon	TRUE	canonical	3	480	junction_18	71.7805568876937	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATACACCTTTCTGATAGA	NA	False	NA	-24	True	TATAAA	-17	NA	180971769	180920366	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_180921475_180922548_180922620_180924700_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004417	chr1	-	2521	14	FSM	ENSMUSG00000038733.15	ENSMUST00000162963.8	6452	14	-515	4446	26	-3	multi-exon	FALSE	canonical	3	114	junction_11	18.0616957141628	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCATTTTGAAGCCCGAT	NA	False	NA	NA	False	NA	NA	NA	181039517	181005242	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_181005397_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036615_181036673_181036777_181036878_181038640
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004431	chr1	-	3567	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	-36	-21	-36	21	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	1973	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGCCACAGCTTTGGG	NA	False	NA	-29	True	AATAAA	-22	NA	181669980	181642878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004481	chr1	-	1397	2	FSM	ENSMUSG00000038633.6	ENSMUST00000132551.2	1405	2	28	-20	28	20	multi-exon	FALSE	canonical	3	1179	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTTTAAAAATTGGAAAT	NA	False	NA	NA	False	NA	NA	NA	182110341	182106041	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_182107284_182110186
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004484	chr1	-	3952	5	FSM	ENSMUSG00000047539.10	ENSMUST00000051431.10	4925	5	-12	985	-1	-985	multi-exon	FALSE	canonical	3	148	junction_1	16.5604951616792	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAGCTGGATTTTTTAGA	NA	False	NA	-21	True	AATAAA	-19	NA	182169195	182141651	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_182144851_182145374_182145571_182153818_182153958_182157438_182157549_182168887
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004494	chr1	+	4361	18	FSM	ENSMUSG00000026510.11	ENSMUST00000117245.2	4361	18	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	10.65761582562	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTATTTCCTGGTTTTCCTT	NA	False	NA	8	True	AATAAA	-21	NA	182236736	182289997	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_182237016_182256458_182256607_182259123_182259238_182262916_182263000_182264462_182264565_182268401_182268577_182269186_182269369_182269697_182269863_182270197_182270427_182271889_182271998_182272225_182272375_182273838_182274302_182275965_182276745_182280219_182280358_182281262_182281397_182283261_182283429_182286324_182286525_182289251
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004509	chr1	-	4984	10	FSM	ENSMUSG00000030768.13	ENSMUST00000003035.12	4984	10	-3	3	2	-3	multi-exon	FALSE	canonical	3	35	junction_1	20.4420288428002	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCACCTGTCTCCGTCGT	NA	False	NA	-1	True	AATAAA	-31	NA	183003052	182867832	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_182871435_182877807_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_182984515_182984604_183002886
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004516	chr1	-	3731	14	FSM	ENSMUSG00000046836.14	ENSMUST00000057062.12	3430	14	-301	0	-24	0	multi-exon	FALSE	canonical	3	98	junction_3	13.1918030852137	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGCTGGATTTATGTGG	NA	False	NA	NA	False	AATAAA	-17	NA	183078837	183057915	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078446
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004528	chr1	+	1493	1	FSM	ENSMUSG00000042901.11	ENSMUST00000192252.2	1932	1	450	-11	-9	11	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAACTATGTATAATCAG	NA	False	NA	NA	False	ATTAAA	-35	NA	183078583	183080076	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_183078600_183080100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004571	chr1	-	3559	23	FSM	ENSMUSG00000026618.12	ENSMUST00000027921.11	5471	23	0	1912	0	-1069	multi-exon	TRUE	canonical	3	288	junction_20	32.2887284275964	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTGTGGATGACGAAGC	NA	False	NA	2	True	AATAAA	-36	NA	185061593	185018834	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_185019389_185020236_185020382_185021549_185021741_185022682_185022829_185023515_185023623_185026940_185027073_185027751_185027878_185028607_185028711_185029669_185029779_185034904_185034999_185035495_185035599_185048090_185048252_185050003_185050156_185050760_185050852_185053033_185053204_185054596_185054713_185055017_185055109_185055189_185055300_185055382_185055433_185055863_185056013_185057699_185057860_185059816_185059940_185061217
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004591	chr1	+	2193	9	FSM	ENSMUSG00000026617.17	ENSMUST00000027916.13	2200	9	2	5	2	-5	multi-exon	FALSE	canonical	3	151	junction_6	39.6957176531676	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGTAATTGCCTTTATT	NA	False	NA	NA	False	ATTAAA	-16	NA	185064347	185089969	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004601	chr1	+	2082	9	NIC	ENSMUSG00000026617.17	novel	1226	10	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	92.0101047439899	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGTAATTGCCTTTATT	NA	False	NA	NA	False	ATTAAA	-16	NA	185064376	185089969	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr1_+_185064461_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004612	chr1	+	3064	20	NNC	ENSMUSG00000026615.15	novel	5638	20	NA	NA	-3	-2571	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	773.860133955231	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGAAAAGCAGAACAAGCC	NA	False	NA	NA	False	NA	NA	NA	185095251	185139825	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118532_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139396_185139687
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004615	chr1	+	3061	20	NNC	ENSMUSG00000026615.15	novel	5638	20	NA	NA	0	-2571	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	767.171980487706	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGAAAAGCAGAACAAGCC	NA	False	NA	NA	False	NA	NA	NA	185095254	185139825	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118532_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133870_185139157_185139392_185139687
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004627	chr1	+	3034	20	NNC	ENSMUSG00000026615.15	novel	5638	20	NA	NA	20	-2571	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	773.860133955231	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGAAAAGCAGAACAAGCC	NA	False	NA	NA	False	NA	NA	NA	185095274	185139825	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118532_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139396_185139694
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004641	chr1	-	615	2	NNC	ENSMUSG00000001305.6	novel	3092	4	NA	NA	20421	6	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGCTTCCCTGCTCAGA	NA	False	NA	-10	True	ATTAAA	-18	NA	186461101	186453282	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_-_186453744_186460947
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004650	chr1	+	3232	1	FSM	ENSMUSG00000039224.2	ENSMUST00000045108.2	3212	1	253	-273	253	273	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTATGGTTTTTTGTTTTG	NA	False	NA	7	True	NA	NA	NA	186699865	186703097	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_186699900_186703100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004660	chr1	-	1972	12	ISM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	-29	19228	-29	-1109	5prime_fragment	FALSE	canonical	3	128	junction_1	16.4859068287717	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATGTGAAGAATTGAAAGA	NA	False	NA	NA	False	NA	NA	NA	189420312	189392030	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr1_-_189392270_189394193_189394330_189400712_189400836_189403244_189403374_189404705_189404832_189411135_189411339_189412417_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004683	chr1	-	4010	15	FSM	ENSMUSG00000089872.11	ENSMUST00000061611.15	3995	15	-15	0	-15	0	multi-exon	FALSE	canonical	3	29	junction_3	6.52154983457904	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCTTCCTCATTTAATA	NA	False	NA	0	True	AATAAA	-16	NA	190643982	190505075	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_190505901_190514731_190514828_190515760_190515844_190530848_190530939_190531209_190532779_190541079_190541213_190542270_190542319_190566202_190566296_190576683_190576800_190603788_190604149_190617530_190617625_190620845_190620962_190631647_190631769_190637279_190637316_190643752
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004714	chr1	+	2991	6	FSM	ENSMUSG00000062510.13	ENSMUST00000078259.8	4879	6	-23	1911	-4	-1911	multi-exon	FALSE	canonical	3	202	junction_5	16.7164589551735	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTACTGTATTTTAAGGA	NA	False	NA	21	True	AATAAA	-25	NA	190795204	190816760	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004739	chr1	+	2238	8	FSM	ENSMUSG00000026627.8	ENSMUST00000027940.6	2246	8	10	-2	10	2	multi-exon	TRUE	canonical	3	75	junction_7	21.6248156769306	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCTACCTTTGTCTCA	NA	False	NA	8	True	AATAAA	-17	NA	191058118	191083113	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_+_191058274_191060379_191060477_191070978_191071189_191072923_191073076_191077173_191077317_191078956_191079102_191080564_191080673_191081885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004762	chr1	+	4189	21	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	7	-65	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	85.0804766089142	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTACCTTTTTTTTCTCT	8306	False	NA	33	True	AATAAA	-22	NA	191307860	191354793	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347950_191349923_191350023_191351707_191351894_191353276_191353914_191353955
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004770	chr1	+	211	1	Intergenic	novelGene_25	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATAATTAGTCCAGAGACC	3872	False	NA	NA	False	AATACA	-3	NA	191343329	191343540	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_+_191343300_191343500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004796	chr1	-	2177	12	FSM	ENSMUSG00000037395.17	ENSMUST00000192866.6	1844	12	22	-355	0	152	multi-exon	FALSE	canonical	3	28	junction_1	6.62077871128477	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTTAAGTTCCTTAAGGA	NA	False	NA	NA	False	NA	NA	NA	191822337	191784731	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_191785456_191785925_191786168_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004800	chr1	-	2857	12	FSM	ENSMUSG00000037375.17	ENSMUST00000044190.12	2839	12	-15	-3	-15	3	multi-exon	TRUE	canonical	3	12	junction_1	5.12327374676559	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGTCTTGATACTTC	NA	False	NA	NA	False	AATAAA	-17	NA	192453546	192195132	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_192196284_192235246_192235392_192277194_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427_192408662_192409591_192409787_192423817_192423932_192431188_192431257_192441978_192442109_192453287
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004820	chr1	-	868	2	FSM	ENSMUSG00000009633.4	ENSMUST00000009777.4	871	2	4	-1	4	1	multi-exon	FALSE	canonical	3	79	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATTATTTAATTCTTGG	NA	False	NA	0	True	AATAAA	-17	NA	192955521	192954467	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr1_-_192955111_192955296
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004866	chr10	+	5957	3	FSM	ENSMUSG00000038587.11	ENSMUST00000239373.2	5956	3	0	-1	0	1	multi-exon	FALSE	canonical	3	114	junction_1	774.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTGTTTTTTTATTAAA	NA	False	NA	24	True	AATAAA	-20	NA	4284544	4309471	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_4284710_4303141_4307940_4308477
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004877	chr10	-	1842	13	FSM	ENSMUSG00000019763.12	ENSMUST00000042251.11	3139	13	44	1253	0	3	multi-exon	FALSE	canonical	3	107	junction_3	17.5220099684178	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTCAGCTCTTAATTAT	5706	False	NA	-2	True	NA	NA	NA	4382344	4353167	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382265
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004912	chr10	-	3423	13	FSM	ENSMUSG00000015202.14	ENSMUST00000015346.12	3447	13	25	-1	25	1	multi-exon	FALSE	canonical	3	41	junction_10	5.32812245438193	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGGATTTTATGAATTT	NA	False	NA	-3	True	AATAAA	-12	NA	7162212	7069061	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_7070587_7076094_7076185_7076634_7076844_7079022_7079148_7084521_7084669_7085047_7085117_7088354_7088415_7090318_7090439_7092960_7093003_7102863_7102952_7104282_7104486_7110643_7110808_7161631
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004924	chr10	+	3382	7	FSM	ENSMUSG00000019796.13	ENSMUST00000019931.12	3386	7	4	0	4	0	multi-exon	FALSE	canonical	3	223	junction_6	23.7065391822594	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTCTTATAAATTATAG	7269	False	NA	23	True	AATAAA	-30	NA	7465584	7501247	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_7466378_7471867_7472029_7474470_7474613_7478592_7478719_7479937_7480148_7484307_7484404_7499393
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004934	chr10	-	2439	8	FSM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	318	0	13	0	multi-exon	FALSE	canonical	3	339	junction_1	146.985630284746	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGATCCTTGGTAGTCA	NA	False	NA	0	True	AATAAA	-20	NA	7539054	7505136	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004969	chr10	+	2884	13	FSM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	19	568	2	-568	multi-exon	FALSE	canonical	3	182	junction_12	33.3716446503115	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTACTTTTTTCTTTCTT	1141	False	NA	14	True	AGTAAA	-19	NA	7668673	7698331	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000004977	chr10	-	1166	2	Intergenic	novelGene_26	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTGGTCTCGCTGGTCCTT	NA	False	NA	NA	False	NA	NA	NA	8422302	8419966	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_-_8421034_8422203
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005035	chr10	-	1563	6	FSM	ENSMUSG00000019806.14	ENSMUST00000162610.8	1554	6	-9	0	-9	0	multi-exon	FALSE	canonical	3	87	junction_1	15.3179633110933	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGTCTGCACTGTTCA	NA	False	NA	0	True	AATAAA	-17	NA	13744733	13522797	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_13523451_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005044	chr10	+	543	1	FSM	ENSMUSG00000071532.7	ENSMUST00000096020.7	468	1	-13	-62	-13	62	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAATGACTTTATAGTAA	7713	False	NA	NA	False	CATAAA	-12	NA	14398808	14399351	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_14398800_14399400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005056	chr10	-	2007	1	Genic_Genomic	ENSMUSG00000112478.2	novel	NA	NA	NA	NA	-1167	-3553	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAGAGAGAAAAGAGAGAA	NA	False	NA	NA	False	NA	NA	NA	17200143	17198136	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr10_-_17198100_17200100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005057	chr10	+	1958	2	FSM	ENSMUSG00000039910.11	ENSMUST00000038107.9	1979	2	3	18	3	13	multi-exon	FALSE	canonical	3	306	junction_1	0	279	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTTTCTAAAAGTCAGT	NA	False	NA	NA	False	AATAAA	-16	NA	17598968	17601404	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_17599208_17599685
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005076	chr10	-	864	5	FSM	ENSMUSG00000059554.13	ENSMUST00000052648.9	2255	5	-3	1394	-3	-1394	multi-exon	FALSE	canonical	3	18	junction_1	22.796655456448	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTAAAACCTTCTTAAGG	NA	False	NA	NA	False	NA	NA	NA	18110729	18093925	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_18094141_18095235_18095391_18100644_18100809_18106166_18106367_18110599
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005087	chr10	+	2083	7	FSM	ENSMUSG00000020009.14	ENSMUST00000020188.13	2112	7	29	0	20	0	multi-exon	FALSE	canonical	3	26	junction_4	3.14907393794853	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACTTGGATATTCATTTA	NA	False	NA	17	True	AGTAAA	-18	NA	19467725	19485977	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_19467946_19473163_19473279_19477067_19477232_19479501_19479681_19481981_19482169_19483004_19483130_19484884
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005126	chr10	+	2788	18	FSM	ENSMUSG00000019977.17	ENSMUST00000219915.2	2733	18	-40	-15	14	0	multi-exon	FALSE	canonical	3	828	junction_14	97.3053197904183	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTTTATTTCTTAGACA	NA	False	NA	27	True	AATAAA	-29	NA	21171891	21244797	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005130	chr10	+	2646	5	FSM	ENSMUSG00000019977.17	ENSMUST00000092674.14	2625	5	-31	10	-2	-7	multi-exon	FALSE	canonical	3	88	junction_4	452.231688407613	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAAGTATGTTTGCATG	NA	False	NA	NA	False	AATAAA	-14	NA	21171905	21187098	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184997
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005172	chr10	+	2638	12	FSM	ENSMUSG00000019970.16	ENSMUST00000164659.8	2602	12	-31	-5	-31	0	multi-exon	FALSE	canonical	3	251	junction_1	208.20654874943	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	18	True	AATAAA	-24	NA	21854539	21875802	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005180	chr10	+	2484	12	FSM	ENSMUSG00000019970.16	ENSMUST00000100036.10	2476	12	-3	-5	-3	0	multi-exon	FALSE	canonical	3	40	junction_1	266.915376443206	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	18	True	AATAAA	-24	NA	21868118	21875802	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_21868307_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005190	chr10	+	2488	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	-32	0	-32	0	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	3220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	18	True	AATAAA	-24	NA	21870532	21875802	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005195	chr10	+	2436	12	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	278.231694875077	130	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	18	True	AATAAA	-24	NA	21870581	21875802	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874146_21874558
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005198	chr10	+	2443	12	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	278.231694875077	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	18	True	AATAAA	-24	NA	21870581	21875802	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874153_21874558
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005200	chr10	+	2545	11	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	717	junction_1	86.156601604288	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	18	True	AATAAA	-24	NA	21870581	21875802	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21874149_21874558
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005242	chr10	-	565	5	FSM	ENSMUSG00000061983.8	ENSMUST00000220070.2	494	5	-69	-2	21	2	multi-exon	FALSE	canonical	3	3174	junction_1	596.623153674076	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTGTATTTCTTG	NA	False	NA	-16	True	AATAAA	-15	NA	23663056	23661093	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005256	chr10	+	2343	5	FSM	ENSMUSG00000019997.12	ENSMUST00000020171.12	2398	5	60	-5	60	0	multi-exon	FALSE	canonical	3	24	junction_4	4.81534007106456	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGGCTGTTCATTCTTG	NA	False	NA	10	True	AATAAA	-26	NA	24471399	24474581	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_24471687_24471773_24471997_24472244_24472497_24472629_24472842_24473212
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005263	chr10	-	1664	8	NIC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	-6	196	combination_of_known_junctions	FALSE	canonical	3	110	junction_5	10.3430939199417	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATCAACAGTATTCTAAGG	NA	False	NA	NA	False	AATAAA	-1	NA	25172977	25045628	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_25046301_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25159790_25159940_25165496_25165629_25172825
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005281	chr10	+	950	1	FSM	ENSMUSG00000112808.2	ENSMUST00000218296.2	633	1	-44	-273	-44	273	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCATAGGAATTTGTATTA	NA	False	NA	NA	False	NA	NA	NA	25983642	25984592	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_25983600_25984600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005303	chr10	-	1976	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160372.9	1948	3	-23	-5	-23	5	multi-exon	FALSE	canonical	3	93	junction_2	66.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGTTTGAGTCTGGAA	NA	False	NA	NA	False	AATAAA	-20	NA	29238066	29222166	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_29223880_29230287_29230444_29237959
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005313	chr10	-	624	1	FSM	ENSMUSG00000069682.7	ENSMUST00000092620.6	635	1	0	11	0	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GATAACCAGTGGAAAAAAAA	NA	False	NA	-19	True	AATAAA	-10	NA	29575376	29574752	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_29574800_29575400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005319	chr10	-	1821	13	FSM	ENSMUSG00000019792.9	ENSMUST00000019927.7	2359	13	48	490	-6	0	multi-exon	FALSE	canonical	3	159	junction_10	17.7080882335979	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	False	NA	-2	True	AATAAA	-23	NA	30476697	30410710	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30476585
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005342	chr10	-	734	1	FSM	ENSMUSG00000110960.2	ENSMUST00000214434.2	351	1	-36	-347	-36	347	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTATGAAGTTCTGTAT	NA	False	NA	NA	False	NA	NA	NA	31290197	31289463	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_31289500_31290200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005345	chr10	+	251	1	Intergenic	novelGene_27	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCATAATCATTATATATT	NA	False	NA	NA	False	NA	NA	NA	33254320	33254571	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_+_33254300_33254600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005397	chr10	-	1893	1	FSM	ENSMUSG00000063953.4	ENSMUST00000080898.4	3218	1	0	1325	0	-1325	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAGTCTTTGTAAGAAAA	NA	False	NA	NA	False	ATTAAA	-16	NA	35587888	35585995	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_35586000_35587900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005399	chr10	+	2054	14	FSM	ENSMUSG00000019777.17	ENSMUST00000019911.14	2005	14	-44	-5	-44	5	multi-exon	TRUE	canonical	3	1084	junction_4	88.4199902429095	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTCTGTTTATTATGAA	NA	False	NA	19	True	ATTAAA	-20	NA	36850495	36877890	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_36850800_36861122_36861236_36862302_36862421_36864075_36864151_36865145_36865285_36867752_36867895_36869603_36869697_36869771_36869881_36872984_36873126_36873389_36873499_36873962_36874094_36874409_36874566_36876364_36876423_36877524
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005405	chr10	+	1981	14	NNC	ENSMUSG00000019777.17	novel	2005	14	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_13	331.192394790194	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGTTTTCTGTCTGTTTA	NA	False	NA	12	True	ATTAAA	-13	NA	36850539	36877883	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_36850800_36861122_36861236_36862302_36862421_36864075_36864151_36865145_36865285_36867752_36867895_36869603_36869697_36869771_36869881_36872984_36873126_36873389_36873499_36873962_36874094_36874409_36874566_36876364_36876401_36877524
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005425	chr10	+	3601	14	FSM	ENSMUSG00000019843.15	ENSMUST00000099967.10	3528	14	-64	-9	-30	0	multi-exon	FALSE	canonical	3	82	junction_9	15.9414609592343	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTTATTTGTGTACA	NA	False	NA	NA	False	ATTAAA	-30	NA	39245729	39441377	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_39246187_39271000_39271041_39331061_39331132_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39405432_39405598_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005431	chr10	+	2612	14	FSM	ENSMUSG00000019843.15	ENSMUST00000063091.13	3562	14	-8	958	-8	0	multi-exon	FALSE	canonical	3	31	junction_8	31.8009712925239	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCAGGACAGGTGTTTGG	NA	False	NA	NA	False	AATAAA	-27	NA	39245751	39440419	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_39246187_39271000_39271041_39331061_39331132_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39405914_39406071_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005441	chr10	+	2114	9	FSM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	274	479	274	3	multi-exon	FALSE	canonical	3	53	junction_2	7.56534037568701	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTATCTCAGTGGAGG	NA	False	NA	8	True	AATAAA	-21	NA	39489203	39530824	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_39489343_39501845_39502656_39510530_39510721_39515215_39515395_39517301_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005454	chr10	+	2862	13	ISM	ENSMUSG00000019841.16	ENSMUST00000019986.13	10713	32	0	53198	0	-20810	5prime_fragment	FALSE	canonical	3	30	junction_10	6.11464544261471	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAGGTCTTCAGGAAAC	NA	False	NA	NA	False	AATAAA	-31	NA	39608113	39698009	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr10_+_39608610_39659138_39659329_39666764_39666840_39670859_39671021_39675876_39675974_39680947_39681043_39681595_39681701_39682657_39682743_39682830_39682980_39689966_39690087_39693137_39693376_39696443_39696587_39697101
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005488	chr10	-	3346	15	FSM	ENSMUSG00000038446.9	ENSMUST00000044166.9	3534	15	188	0	-14	0	multi-exon	FALSE	canonical	3	163	junction_10	18.6027208894236	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGAGTTCATTGTG	NA	False	NA	-3	True	AATAAA	-19	NA	40759119	40707616	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723125_40723201_40723919_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005492	chr10	+	2717	9	FSM	ENSMUSG00000019831.15	ENSMUST00000105509.2	2719	9	0	2	0	-1	multi-exon	FALSE	canonical	3	202	junction_5	32.5209067370515	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGGTGTCGCTCTTCGA	NA	False	NA	16	True	AATAAA	-18	NA	40759822	40814564	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_40760067_40796243_40796405_40802479_40802615_40806626_40806781_40807911_40808030_40809108_40809282_40810472_40810653_40812105_40812735_40813641
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005495	chr10	-	3298	23	FSM	ENSMUSG00000038417.5	ENSMUST00000043814.5	3282	23	-5	-11	-5	11	multi-exon	FALSE	canonical	3	326	junction_19	28.6394298502739	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGACTTATTTTAGGAG	NA	False	NA	-14	True	AATAAA	-28	NA	41179261	41064156	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_41064696_41096894_41096982_41102917_41103001_41104102_41104299_41106002_41106087_41108102_41108251_41109547_41109607_41116500_41116640_41127712_41127880_41129635_41129785_41130839_41130886_41132416_41132534_41134010_41134145_41139064_41139163_41139880_41140044_41141381_41141483_41143682_41143812_41146294_41146444_41148953_41149005_41153353_41153511_41161285_41161410_41161596_41161696_41178982
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005518	chr10	+	3563	24	FSM	ENSMUSG00000019823.18	ENSMUST00000019967.16	3563	24	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	27.5095446574272	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9093	False	NA	29	True	AATAAA	-18	NA	41352309	41363026	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005529	chr10	+	3333	23	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	71	junction_2	35.4241128130973	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9115	False	NA	29	True	AATAAA	-18	NA	41352331	41363026	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_41352537_41354005_41354311_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005530	chr10	+	3402	23	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_3	52.4446973581861	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9115	False	NA	29	True	AATAAA	-18	NA	41352331	41363026	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_41352537_41354005_41354311_41354958_41355064_41355321_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005595	chr10	-	1630	1	FSM	ENSMUSG00000085666.4	ENSMUST00000121229.2	1194	1	-169	-267	-169	267	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTTCTCTGAGGAGTC	2293	False	NA	NA	False	AAGAAA	-1	NA	41931471	41929841	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_41929800_41931500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005608	chr10	-	2364	13	FSM	ENSMUSG00000038302.15	ENSMUST00000041024.15	2513	13	150	-1	0	1	multi-exon	FALSE	canonical	3	47	junction_11	7.72801541291309	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTTGTCTGATTCATTT	NA	False	NA	2	True	AATAAA	-19	NA	42354411	42188579	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42354258
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005643	chr10	+	2151	8	FSM	ENSMUSG00000038240.14	ENSMUST00000095725.11	2127	8	-17	-7	-17	7	multi-exon	FALSE	canonical	3	61	junction_4	6.25316246521123	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGCCTTTCTTTCTTA	NA	False	NA	NA	False	ATTAAA	-35	NA	43097464	43316605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43269866_43270041_43271556_43271689_43289510_43289544_43315794
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005649	chr10	+	561	1	FSM	ENSMUSG00000045886.8	ENSMUST00000057649.8	563	1	0	2	0	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTCGGTGGTCATGGTG	NA	False	NA	NA	False	AATAAA	-44	NA	43400079	43400640	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_43400100_43400600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005671	chr10	+	2979	9	FSM	ENSMUSG00000019864.15	ENSMUST00000054418.12	2981	9	3	-1	3	1	multi-exon	FALSE	canonical	3	128	junction_8	16.985287751463	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGGTTTTTGGTCACTGT	NA	False	NA	9	True	NA	NA	NA	43777805	43823859	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_43778533_43783754_43783907_43785902_43785972_43786788_43786914_43797382_43797432_43804318_43804456_43808358_43808543_43811994_43812088_43822416
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005677	chr10	+	2358	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	2	-8	2	8	multi-exon	FALSE	canonical	3	249	junction_3	36.7828709025918	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGGCTCAAGTGAGGT	NA	False	NA	NA	False	AATAAA	-26	NA	44144355	44240295	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005727	chr10	+	3628	5	FSM	ENSMUSG00000023068.17	ENSMUST00000023830.16	4605	5	0	977	0	-977	multi-exon	FALSE	canonical	3	398	junction_2	27.0370116691915	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAGTAGTATGTGAATGT	NA	False	NA	9	True	AATAAA	-22	NA	52293642	52315302	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_52294265_52305288_52305415_52306162_52306313_52309440_52309541_52312672
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005744	chr10	+	2122	2	FSM	ENSMUSG00000047669.9	ENSMUST00000063138.8	2140	2	15	3	15	-3	multi-exon	FALSE	canonical	2	6	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTATAAAGCTTCTCTA	NA	False	NA	NA	False	AATAAA	-20	NA	55983027	55992973	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_55983126_55990949
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005760	chr10	-	2853	9	FSM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	27	0	-26	0	multi-exon	FALSE	canonical	3	187	junction_6	44.2279252848243	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTGGTAGCATTACA	NA	False	NA	NA	False	AATAAA	-16	NA	57408599	57391869	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760_57403923_57408452
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005784	chr10	+	208	1	Intergenic	novelGene_28	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGGTCTGGTTCCCAGCA	30	False	NA	NA	False	NA	NA	NA	58394418	58394626	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_+_58394400_58394600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005807	chr10	+	2630	15	FSM	ENSMUSG00000019916.15	ENSMUST00000009789.15	4043	15	70	1343	2	5	multi-exon	FALSE	canonical	3	22	junction_8	56.7996838163088	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTGTGTGGTATTTTCA	NA	False	NA	23	True	TTTAAA	-3	NA	59159187	59207783	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59190161_59190233_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005810	chr10	+	1155	1	FSM	ENSMUSG00000069622.6	ENSMUST00000092511.6	630	1	-140	-385	-140	385	mono-exon	FALSE	NA	NA	NA	NA	NA	359	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTTATTGATACAAAGTT	1362	False	NA	NA	False	NA	NA	NA	59231436	59232591	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_59231400_59232600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005824	chr10	+	2362	12	NNC	ENSMUSG00000020111.16	novel	2442	12	NA	NA	0	2	intron_retention	FALSE	canonical	0	0	junction_7	56.7676138609954	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTGTCCTTTCTTTCT	NA	False	NA	29	True	NA	NA	NA	59538384	59699956	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325_59586370_59603959_59604075_59623762_59623850_59624700_59624899_59663010_59663149_59675496_59675606_59697384_59697475_59699000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005868	chr10	+	2653	14	FSM	ENSMUSG00000004207.15	ENSMUST00000105465.8	2646	14	-1	-6	-1	3	multi-exon	FALSE	canonical	3	864	junction_6	81.2601199887849	1354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCCTTGTGTCTCTTTG	6988	False	NA	NA	False	AATAAA	-19	NA	60113447	60138379	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005874	chr10	+	2633	14	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	15	3	at_least_one_novel_splicesite	FALSE	canonical	3	130	junction_8	249.821972115103	264	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCCTTGTGTCTCTTTG	7005	False	NA	NA	False	AATAAA	-19	NA	60113464	60138379	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135245_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005880	chr10	+	2631	14	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	17	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	279.941583086237	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCCTTGTGTCTCTTTG	7007	False	NA	NA	False	AATAAA	-19	NA	60113466	60138379	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129131_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005924	chr10	-	4131	15	FSM	ENSMUSG00000020097.15	ENSMUST00000122259.8	4102	15	-29	0	1	0	multi-exon	FALSE	canonical	3	186	junction_14	78.4471744785844	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	NA	False	NA	-2	True	AATAAA	-16	NA	60983452	60934420	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983301
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005937	chr10	+	210	1	Intergenic	novelGene_29	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCAGCTCTGCTCCATCA	NA	False	NA	NA	False	NA	NA	NA	61154744	61154954	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_+_61154700_61155000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005960	chr10	+	1785	3	FSM	ENSMUSG00000037171.7	ENSMUST00000049339.7	2095	3	310	0	310	0	multi-exon	FALSE	canonical	3	289	junction_2	2.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCTCACAATGTGTT	NA	False	NA	20	True	ATTAAA	-17	NA	61254060	61261117	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_61254275_61258760_61259477_61260262
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005974	chr10	+	3214	5	FSM	ENSMUSG00000037151.9	ENSMUST00000049242.9	3216	5	2	0	2	0	multi-exon	FALSE	canonical	3	23	junction_1	4.84767985741633	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGCTGGTGCTTGGTGTCT	1776	False	NA	3	True	AATAAA	-20	NA	61311581	61418570	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_61311669_61318114_61318262_61362838_61362989_61383826_61383995_61415908
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000005992	chr10	+	2290	4	FSM	ENSMUSG00000020087.6	ENSMUST00000020284.5	2286	4	-5	1	-5	-1	multi-exon	FALSE	canonical	3	269	junction_1	6.12825877028341	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTCTGTTGGCTGCTTT	NA	False	NA	20	True	AATAAA	-23	NA	61531287	61538551	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_61532522_61534076_61534208_61535221_61535408_61537812
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006073	chr10	-	2619	9	FSM	ENSMUSG00000020078.17	ENSMUST00000105447.11	2597	9	23	-45	23	3	multi-exon	FALSE	canonical	3	953	junction_7	50.5010829091813	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCATTACAGCATTGC	5221	False	NA	-2	True	AATAAA	-18	NA	62322561	62291010	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006087	chr10	-	2488	7	FSM	ENSMUSG00000036955.17	ENSMUST00000065887.14	2472	7	-16	0	-16	0	multi-exon	FALSE	canonical	3	136	junction_2	17.3629554575891	287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTTTATTACCTCTTTT	8185	False	NA	0	True	AATAAA	-22	NA	62414252	62394248	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_62395663_62399014_62399131_62401815_62401901_62405237_62405422_62406177_62406258_62410828_62410928_62413742
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006141	chr10	+	3103	9	FSM	ENSMUSG00000071253.9	ENSMUST00000044977.10	3145	9	42	0	-5	0	multi-exon	FALSE	canonical	3	58	junction_3	11.9314447993527	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGATGGCTTGGTTTTTT	NA	False	NA	18	True	ATTAAA	-19	NA	62756453	62782277	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_62756661_62764074_62764168_62766081_62766216_62768497_62768562_62773196_62773319_62773706_62773774_62776820_62776984_62778429_62778499_62780093
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006199	chr10	+	2501	12	FSM	ENSMUSG00000037846.19	ENSMUST00000118160.8	3970	12	117	1352	-11	218	multi-exon	FALSE	canonical	3	32	junction_2	17.4900207674628	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTAATCTGCTATTCAAA	NA	False	NA	26	True	ATTAAA	-23	NA	67815516	67878346	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_67815643_67823136_67823343_67833394_67833454_67837753_67837808_67839033_67839152_67841329_67841525_67853635_67853731_67861342_67861450_67862347_67862480_67871618_67871782_67875860_67875969_67877208
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006223	chr10	+	206	1	Intergenic	novelGene_30	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGCTGAGCAAGCCAGGG	400	False	NA	NA	False	NA	NA	NA	69192495	69192701	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_+_69192500_69192700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006231	chr10	+	3842	20	FSM	ENSMUSG00000069601.15	ENSMUST00000181974.8	3751	20	-91	0	44	0	multi-exon	FALSE	canonical	3	64	junction_16	12.5742118370934	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGCTGCAAATTTAAATAA	NA	False	NA	NA	False	NA	NA	NA	69761692	69860473	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439_69840822_69851397_69851484_69859661
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006244	chr10	-	193	1	Intergenic	novelGene_31	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTAAAGAGTTCATATGC	NA	False	NA	NA	False	NA	NA	NA	70845469	70845276	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_-_70845300_70845500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006268	chr10	+	1326	5	FSM	ENSMUSG00000060733.14	ENSMUST00000118381.8	1323	5	0	-3	0	3	multi-exon	FALSE	canonical	3	262	junction_3	39.274673773311	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATGTAAAGCTGCTCCT	2289	False	NA	NA	False	AATAAA	-17	NA	71183665	71213249	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_71183921_71199279_71199366_71201838_71201936_71208537_71208711_71212534
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006288	chr10	-	5190	1	Intergenic	novelGene_32	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTTTCTTGTGGGTGATT	NA	False	NA	NA	False	NA	NA	NA	74555798	74550608	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_-_74550600_74555800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006351	chr10	+	2154	14	NIC	ENSMUSG00000006345.11	novel	2140	14	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	89.9111987943607	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTTTAGTGTCTTGTGT	NA	False	NA	32	True	NA	NA	NA	75404467	75422030	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_75404601_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006370	chr10	-	3139	15	FSM	ENSMUSG00000006342.16	ENSMUST00000095541.11	3151	15	11	1	0	0	multi-exon	FALSE	canonical	3	52	junction_6	11.246768243294	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTTCCCGTCTGTTTG	NA	False	NA	-2	True	NA	NA	NA	75479814	75472540	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75477958_75478111_75478296_75478505_75479707
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006371	chr10	-	2779	13	FSM	ENSMUSG00000006342.16	ENSMUST00000077610.6	2275	13	0	-504	0	0	multi-exon	FALSE	canonical	1	3	junction_12	20.894410470001	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTTCCCGTCTGTTTG	NA	False	NA	-2	True	NA	NA	NA	75479814	75472540	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75479707
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006382	chr10	-	671	3	FSM	ENSMUSG00000001666.9	ENSMUST00000001716.8	649	3	-15	-7	-15	4	multi-exon	FALSE	canonical	3	462	junction_2	12	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTTTGCTTCTGTAACC	NA	False	NA	0	True	AATAAA	-25	NA	75609263	75607059	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_75607341_75608571_75608748_75609049
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006393	chr10	+	201	1	Intergenic	novelGene_33	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGCTGACCTCAGACTTG	NA	False	NA	NA	False	NA	NA	NA	75679956	75680157	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_+_75680000_75680200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006396	chr10	-	769	4	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	-2039	5	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	7245.77975253335	789	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCAGCTTCTGCTTCCTT	NA	False	NA	-5	True	AATAAA	-23	NA	75698113	75695181	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_75695378_75695520_75695694_75695894_75696209_75698027
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006408	chr10	-	1660	9	FSM	ENSMUSG00000000902.14	ENSMUST00000000925.10	1660	9	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_7	283.203990084886	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAGTAGCATAAAACTG	6861	False	NA	-2	True	AATAAA	-20	NA	75757451	75732602	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752606_75752746_75757136
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006421	chr10	-	2292	8	FSM	ENSMUSG00000000901.18	ENSMUST00000000924.13	2288	8	-3	-1	-3	1	multi-exon	FALSE	canonical	3	194	junction_3	14.5349683908307	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCTGTCTGTTTTTCTTTG	5053	False	NA	-2	True	ATTAAA	-18	NA	75768339	75759054	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006425	chr10	-	1719	9	NNC	ENSMUSG00000000901.18	novel	1793	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	71.7896232055859	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5083	False	NA	-3	True	ATTAAA	-17	NA	75768309	75759055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_75759325_75759866_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006426	chr10	-	1793	9	FSM	ENSMUSG00000000901.18	ENSMUST00000120281.8	1793	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	51.1639521538358	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5083	False	NA	-3	True	ATTAAA	-17	NA	75768309	75759055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_75759325_75759792_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006430	chr10	-	2994	7	NIC	ENSMUSG00000000901.18	novel	1793	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	194	junction_2	15.0489940601431	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5083	False	NA	-3	True	ATTAAA	-17	NA	75768309	75759055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_75759950_75761253_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006464	chr10	+	4773	3	NNC	ENSMUSG00000049764.9	novel	5097	2	NA	NA	-25	-413	at_least_one_novel_splicesite	FALSE	canonical	1	26	junction_1	62	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTCTGTCTTTTTTTTT	NA	False	NA	16	True	AATAAA	-18	NA	75868458	75878655	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_75868584_75869448_75869509_75874067
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006473	chr10	-	1973	15	NNC	ENSMUSG00000020226.10	novel	3202	15	NA	NA	-4497	-1124	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	4.04817923294422	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCGGGAAATGTTTGTGC	NA	False	NA	NA	False	TATAAA	-24	NA	75951292	75894451	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_75894734_75896182_75896289_75898047_75898264_75899787_75899957_75906337_75906489_75908261_75908370_75910813_75910950_75917149_75917371_75925739_75925821_75926512_75926619_75939657_75939763_75942540_75942601_75944331_75944437_75945851_75945924_75951237
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006477	chr10	-	2017	11	FSM	ENSMUSG00000020230.16	ENSMUST00000020452.12	2016	11	0	-1	0	1	multi-exon	FALSE	canonical	2	10	junction_3	2.63818119165458	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTGTTCTGTTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	76073671	76043059	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_76043628_76044245_76044418_76045171_76045309_76046231_76046362_76053147_76053324_76056831_76056997_76058282_76058445_76061121_76061305_76062023_76062150_76072545_76072656_76073583
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006527	chr10	-	2177	16	FSM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	-161	-3	-62	3	multi-exon	FALSE	canonical	3	60	junction_5	18.4407760742931	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGACTTCTCTCTGCTA	1075	False	NA	0	True	AATAAA	-21	NA	76797783	76597687	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006565	chr10	-	5070	42	FSM	ENSMUSG00000001435.16	ENSMUST00000081654.13	5063	42	-7	0	-7	0	multi-exon	FALSE	canonical	3	279	junction_22	34.7938605290869	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGTTTATAAGCTGCCT	5928	False	NA	0	True	AATAAA	-20	NA	77002389	76888011	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_76889242_76889988_76890105_76890617_76890816_76891412_76891662_76893202_76893236_76894532_76894665_76894938_76895013_76895091_76895237_76895728_76895858_76896202_76896247_76899812_76899876_76900370_76900414_76901068_76901138_76902783_76902859_76903212_76903267_76903465_76903493_76904223_76904299_76905269_76905333_76905653_76905681_76905783_76905814_76906794_76906885_76907144_76907181_76907437_76907510_76907860_76907897_76908775_76908803_76909573_76909637_76910183_76910316_76911981_76912009_76912992_76913056_76913517_76913677_76913832_76913887_76914109_76914188_76914290_76914354_76915094_76915122_76916512_76916699_76916982_76917060_76921100_76921231_76923209_76923264_76924703_76924791_76931824_76932370_77002123_77002195_77002272
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006569	chr10	-	5049	41	NNC	ENSMUSG00000001435.16	novel	5063	42	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_27	67.0604950772062	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTGGTTTATAAGCTGCC	5938	False	NA	-1	True	AATAAA	-19	NA	77002379	76888012	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_76889242_76889988_76890105_76890617_76890816_76891412_76891662_76893202_76893236_76894532_76894665_76894938_76895013_76895091_76895237_76895728_76895858_76896202_76896247_76899812_76899876_76900370_76900414_76901068_76901138_76902783_76902859_76903212_76903267_76903465_76903493_76904223_76904299_76905269_76905333_76905653_76905681_76905783_76905814_76906794_76906885_76907144_76907181_76907437_76907510_76907860_76907897_76908775_76908803_76909573_76909637_76910183_76910316_76912975_76913056_76913517_76913677_76913832_76913887_76914109_76914188_76914290_76914354_76915094_76915122_76916512_76916699_76916982_76917060_76921100_76921231_76923209_76923264_76924703_76924791_76931824_76932370_77002123_77002195_77002272
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006573	chr10	-	5056	42	NNC	ENSMUSG00000001435.16	novel	5063	42	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	canonical	3	127	junction_6	49.9834594889811	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTGGTTTATAAGCTGCC	5938	False	NA	-1	True	AATAAA	-19	NA	77002379	76888012	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_76889242_76889988_76890105_76890617_76890816_76891412_76891662_76893202_76893236_76894532_76894662_76894938_76895013_76895091_76895237_76895728_76895858_76896202_76896247_76899812_76899876_76900370_76900414_76901068_76901138_76902783_76902859_76903212_76903267_76903465_76903493_76904223_76904299_76905269_76905333_76905653_76905681_76905783_76905814_76906794_76906885_76907144_76907181_76907437_76907510_76907860_76907897_76908775_76908803_76909573_76909637_76910183_76910316_76911981_76912009_76912992_76913056_76913517_76913677_76913832_76913887_76914109_76914188_76914290_76914354_76915094_76915122_76916512_76916699_76916982_76917060_76921100_76921231_76923209_76923264_76924703_76924791_76931824_76932370_77002123_77002195_77002272
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006584	chr10	-	4159	41	NNC	ENSMUSG00000001435.16	novel	5063	42	NA	NA	31	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_27	75.7598838436279	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTTCTAAAACATTTAC	5966	False	NA	-18	True	AATAAA	-17	NA	77002351	76888871	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_76889242_76889988_76890105_76890617_76890816_76891412_76891662_76893202_76893236_76894532_76894662_76894938_76895013_76895091_76895237_76895728_76895858_76896202_76896247_76899812_76899876_76900370_76900414_76901068_76901138_76902783_76902859_76903212_76903267_76903465_76903493_76904223_76904299_76905269_76905333_76905653_76905681_76905783_76905814_76906794_76906885_76907144_76907181_76907437_76907510_76907860_76907897_76908775_76908803_76909573_76909637_76910183_76910316_76912975_76913056_76913517_76913677_76913832_76913887_76914109_76914188_76914290_76914354_76915094_76915122_76916512_76916699_76916982_76917060_76921100_76921231_76923209_76923264_76924703_76924791_76931824_76932370_77002123_77002195_77002272
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006618	chr10	+	253	1	Intergenic	novelGene_34	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACATCATCAGGCCAGTCA	NA	False	NA	NA	False	NA	NA	NA	77362112	77362365	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_+_77362100_77362400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006622	chr10	+	2278	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	16	0	13	0	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGATTTCTTTGTTTTGT	1307	False	NA	32	True	AATAAA	-15	NA	77417569	77434566	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006636	chr10	+	2199	8	NIC	ENSMUSG00000112241.2	novel	512	6	NA	NA	37	4451	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	535.279480691143	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTTGTGTGGTGCTCAC	NA	False	NA	6	True	AATAAA	-19	NA	77442067	77481828	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_77442176_77445645_77445775_77449813_77449886_77466559_77466596_77466682_77466729_77477293_77477413_77479302_77479444_77480280
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006650	chr10	+	1737	7	FSM	ENSMUSG00000020284.17	ENSMUST00000105397.10	1818	7	85	-4	-45	2	multi-exon	FALSE	canonical	3	54	junction_4	1.5723301886761	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCCCAGGCCCACTT	NA	False	NA	16	True	AATAAA	-16	NA	77814442	77821272	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_77814616_77815586_77815606_77816334_77816382_77817417_77817648_77818703_77818876_77819349_77819426_77820252
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006680	chr10	-	3886	21	FSM	ENSMUSG00000032834.12	ENSMUST00000042556.11	3872	21	-13	-1	-13	1	multi-exon	FALSE	canonical	3	184	junction_16	14.9260678009984	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTTGTCTGTGTGTGGT	NA	False	NA	-4	True	AATACA	-18	NA	78020996	78006741	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006697	chr10	-	3606	11	NIC	ENSMUSG00000001211.16	novel	3513	11	NA	NA	78	4	combination_of_known_junctions	FALSE	canonical	3	187	junction_10	110.528910245239	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATGCTTTTTCTCTTTTTC	NA	False	NA	-9	True	AATAAA	-9	NA	78188198	78107392	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78187460_78187546_78188046
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006704	chr10	+	490	1	FSM	ENSMUSG00000064317.6	ENSMUST00000072739.6	309	1	-17	-164	-17	164	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATTAATTTATTTTTA	NA	False	NA	NA	False	NA	NA	NA	78229136	78229626	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_78229100_78229600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006711	chr10	-	5164	11	FSM	ENSMUSG00000032788.16	ENSMUST00000041616.15	5124	11	-42	2	-42	-2	multi-exon	TRUE	canonical	3	285	junction_4	40.3910881259715	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTTAGTGTGGTCATTT	6760	False	NA	-4	True	AATAAA	-15	NA	78300851	78272579	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_78276748_78276970_78277038_78279614_78279752_78280816_78280929_78282783_78282830_78283728_78283815_78285063_78285111_78286116_78286201_78287312_78287418_78289307_78289363_78300594
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006740	chr10	+	2259	15	FSM	ENSMUSG00000032763.12	ENSMUST00000218885.2	2233	15	-3	-23	0	0	multi-exon	FALSE	canonical	3	132	junction_8	19.815990244945	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5890	False	NA	30	True	AATAAA	-39	NA	78410824	78420336	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006756	chr10	-	2749	14	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	-7	0	intron_retention	FALSE	canonical	3	9	junction_12	62.3803944318041	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	-3	True	ATTAAA	-16	NA	79390932	79376078	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385688_79386149_79386241_79390907
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006761	chr10	-	2601	14	FSM	ENSMUSG00000042570.15	ENSMUST00000165028.8	2676	14	75	0	-3	0	multi-exon	FALSE	canonical	3	111	junction_13	38.1023225308973	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	-3	True	ATTAAA	-16	NA	79390958	79376078	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390907
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006803	chr10	+	1249	6	NNC	ENSMUSG00000023175.16	novel	1261	7	NA	NA	-2	0	intron_retention	FALSE	canonical	0	0	junction_5	2689.50535229064	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	21	True	AATAAA	-15	NA	79540339	79547803	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547299
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006853	chr10	+	2965	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	148	-3	-30	3	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	1361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1531	False	NA	26	True	AATAAA	-16	NA	79690408	79700269	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006864	chr10	+	2857	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	-24	336	0	3	multi-exon	FALSE	canonical	3	638	junction_7	276.779833782898	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1561	False	NA	26	True	AATAAA	-16	NA	79690438	79700269	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006868	chr10	+	2855	13	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	0	3	intron_retention	FALSE	canonical	0	0	junction_8	496.6264245442	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1561	False	NA	26	True	AATAAA	-16	NA	79690438	79700269	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697849_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006871	chr10	+	2942	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	3	intron_retention	FALSE	canonical	0	0	junction_9	476.947411496628	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1561	False	NA	26	True	AATAAA	-16	NA	79690438	79700269	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79698241_79698376_79698486_79698704_79698811_79698890_79698978
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006872	chr10	+	2864	12	NNC	ENSMUSG00000006498.17	novel	1765	12	NA	NA	0	3	intron_retention	FALSE	canonical	0	0	junction_8	517.288464371574	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1561	False	NA	26	True	AATAAA	-16	NA	79690438	79700269	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79698241_79698376_79698486_79698704_79698811_79698890_79698978
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006881	chr10	+	2854	12	NNC	ENSMUSG00000006498.17	novel	1765	12	NA	NA	2	3	intron_retention	FALSE	canonical	0	0	junction_8	517.288464371574	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1563	False	NA	26	True	AATAAA	-16	NA	79690440	79700269	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79698249_79698376_79698486_79698704_79698811_79698890_79698978
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006903	chr10	+	2758	12	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	-2	2	intron_retention	FALSE	canonical	0	0	junction_1	517.067270269035	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1587	False	NA	33	True	ATTAAA	-17	NA	79690464	79700195	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_79690556_79694553_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000006926	chr10	-	3223	15	FSM	ENSMUSG00000013833.16	ENSMUST00000165684.8	2950	15	-44	-229	-19	2	multi-exon	TRUE	canonical	3	153	junction_9	18.1911617921159	418	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTGTCACCGTGGTCC	1793	False	NA	1	True	AATAAA	-20	NA	79744776	79730539	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_79731245_79731460_79731545_79732181_79732399_79732592_79732786_79733398_79733533_79734069_79734281_79734730_79734938_79735034_79735244_79735930_79736087_79738256_79738363_79738830_79739263_79742598_79742769_79742872_79742981_79743324_79743491_79744651
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007001	chr10	+	1785	7	FSM	ENSMUSG00000004665.11	ENSMUST00000004784.11	2460	7	11	664	11	-664	multi-exon	FALSE	canonical	3	82	junction_2	7.8616509433805	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCCTGAGTTTGGCCGTG	1780	False	NA	15	True	AGTAAA	-4	NA	79824428	79831232	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_79824575_79827193_79827316_79828106_79828174_79828276_79828415_79829047_79829165_79829261_79829409_79830184
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007012	chr10	+	3507	22	FSM	ENSMUSG00000035697.15	ENSMUST00000043311.7	3499	22	-6	-2	-6	1	multi-exon	TRUE	canonical	3	46	junction_7	15.7468637773006	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCCGATCTTGTTCTTTT	814	False	NA	14	True	AATAAA	-19	NA	79855480	79867304	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_79855633_79856523_79856668_79856784_79856870_79856955_79857029_79857222_79857290_79857379_79857518_79857628_79857694_79857910_79858022_79858108_79858190_79860496_79860686_79861242_79861381_79861989_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866122_79866211_79866565
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007039	chr10	-	4675	32	NIC	ENSMUSG00000035673.11	novel	3903	32	NA	NA	-25	-5	combination_of_known_junctions	FALSE	canonical	3	132	junction_8	18.0258226152743	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGCTGTGGCCTACAG	NA	False	NA	-1	True	AATATA	-16	NA	79938557	79892830	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894564_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938443
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007096	chr10	+	1260	7	FSM	ENSMUSG00000045193.14	ENSMUST00000105365.9	1321	7	61	0	-1	0	multi-exon	FALSE	canonical	3	285	junction_6	33.736314097555	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGCTCTGACCATTTCCC	6190	False	NA	NA	False	ATTAAA	-18	NA	80003672	80007489	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80006815
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007098	chr10	+	2484	7	NIC	ENSMUSG00000045193.14	novel	834	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	60	junction_6	113.828330783197	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCGACTCTGTGGCTTGG	6190	False	NA	NA	False	AATAAA	-17	NA	80003672	80008620	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80008347_80008470
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007131	chr10	+	3368	13	FSM	ENSMUSG00000020156.17	ENSMUST00000125784.8	3392	13	25	-1	0	0	multi-exon	FALSE	canonical	3	168	junction_1	107.02790394202	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATAGTCATTGCA	8464	False	NA	17	True	TATAAA	-15	NA	80062513	80079735	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_80062539_80064155_80064273_80064828_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007132	chr10	+	2397	14	NNC	ENSMUSG00000020156.17	novel	2640	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	166.653664187087	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATAGTCATTGCA	8464	False	NA	17	True	TATAAA	-15	NA	80062513	80079735	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_80062539_80064155_80064273_80064828_80064920_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007178	chr10	+	2106	12	FSM	ENSMUSG00000069565.13	ENSMUST00000105362.8	2081	12	-20	-5	-20	5	multi-exon	FALSE	canonical	3	848	junction_9	77.3423216017195	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGTCTGCTTGTGTCTG	NA	False	NA	17	True	AATAAA	-26	NA	80100797	80124247	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007193	chr10	+	545	4	FSM	ENSMUSG00000063457.15	ENSMUST00000068408.14	500	4	-44	-1	-44	1	multi-exon	FALSE	canonical	3	5732	junction_1	1157.99510649513	2490	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGTTTTTGTTTTTTTT	6298	False	NA	31	True	AATAAA	-22	NA	80128242	80129949	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_80128318_80128608_80128695_80129475_80129711_80129800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007213	chr10	+	1961	5	FSM	ENSMUSG00000035504.17	ENSMUST00000105357.2	2127	5	166	0	-26	0	multi-exon	FALSE	canonical	3	489	junction_4	47.9921868641136	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGTGTCCGCTAAGCTG	7193	False	NA	18	True	AATAAA	-19	NA	80165952	80172275	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170943
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007253	chr10	-	2166	2	NIC	ENSMUSG00000020163.13	novel	445	3	NA	NA	-11	765	intron_retention	FALSE	canonical	3	4370	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCATACGTCTCTTCCC	NA	False	NA	NA	False	NA	NA	NA	80242640	80238065	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_80240121_80242529
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007270	chr10	-	2976	19	FSM	ENSMUSG00000020167.15	ENSMUST00000020377.13	2842	19	-67	-67	-41	6	multi-exon	TRUE	canonical	3	359	junction_12	305.080706788091	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTGATCTAAGGGT	NA	False	NA	-27	True	ATTAAA	-16	NA	80269522	80245374	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_80246109_80248660_80248897_80249038_80249172_80250995_80251123_80251198_80251355_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254653_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007273	chr10	-	2976	19	NIC	ENSMUSG00000020167.15	novel	2928	19	NA	NA	-41	6	combination_of_known_junctions	FALSE	canonical	3	458	junction_2	272.362803836317	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTGATCTAAGGGT	NA	False	NA	-27	True	ATTAAA	-16	NA	80269522	80245374	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_80246109_80248660_80248897_80249038_80249172_80250995_80251123_80251198_80251358_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007274	chr10	-	2973	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105346.10	2839	19	-67	-67	-41	6	multi-exon	FALSE	canonical	3	458	junction_2	257.439271275891	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTGATCTAAGGGT	NA	False	NA	-27	True	ATTAAA	-16	NA	80269522	80245374	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_80246109_80248660_80248897_80249038_80249172_80250995_80251123_80251198_80251355_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007278	chr10	-	2967	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105343.8	2920	19	-41	-6	-41	6	multi-exon	FALSE	canonical	3	359	junction_12	245.119472004073	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTGATCTAAGGGT	NA	False	NA	-27	True	ATTAAA	-16	NA	80269522	80245374	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_80246109_80246231_80246459_80249038_80249172_80250995_80251123_80251198_80251355_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254653_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007300	chr10	-	2703	18	NIC	ENSMUSG00000020167.15	novel	2826	19	NA	NA	-6	4	combination_of_known_splicesites	FALSE	canonical	3	76	junction_1	308.377436915569	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCAGTGTTGATCTAAGG	NA	False	NA	-29	True	ATTAAA	-14	NA	80269487	80245376	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_80246109_80249038_80249172_80250995_80251123_80251198_80251358_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007368	chr10	-	4524	15	FSM	ENSMUSG00000047417.19	ENSMUST00000057910.16	5250	15	-9	735	-9	4	multi-exon	FALSE	canonical	3	315	junction_13	35.2049393566022	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCATAGTGTGTGGTGC	9412	False	NA	-1	True	AATAAA	-18	NA	80397403	80377493	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_80378316_80378398_80378659_80378741_80378858_80379134_80379246_80379480_80379555_80379836_80379951_80380116_80380255_80380593_80380708_80381296_80381421_80381709_80381842_80382135_80382300_80383606_80383821_80384265_80384368_80385166_80386900_80397097
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007378	chr10	-	2807	2	FSM	ENSMUSG00000035397.9	ENSMUST00000038558.9	2674	2	-128	-5	-128	5	multi-exon	FALSE	canonical	3	135	junction_1	0	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCTGTCTGTCTGATTGG	8578	False	NA	-1	True	ATTAAA	-23	NA	80413283	80402952	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_80405057_80412580
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007399	chr10	+	1816	7	FSM	ENSMUSG00000113949.2	ENSMUST00000079883.12	1804	7	-10	-2	-2	2	multi-exon	FALSE	canonical	3	584	junction_5	41.6239781322684	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGCCTTTATCTGTGGAT	NA	False	NA	15	True	AATAAA	-15	NA	80438703	80451619	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007426	chr10	+	2430	12	NIC	ENSMUSG00000003345.17	novel	2348	11	NA	NA	-155	0	combination_of_known_junctions	FALSE	canonical	3	537	junction_4	57.9097331204578	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGCCTGGGCTTTACCA	NA	False	NA	17	True	GGGGCT	-44	NA	80458516	80476583	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_80458785_80470047_80470476_80473721_80473763_80473843_80473914_80473994_80474144_80474227_80474463_80474539_80474626_80474713_80474799_80474918_80475068_80475413_80475498_80475601_80475709_80475855
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007433	chr10	+	2496	11	FSM	ENSMUSG00000003345.17	ENSMUST00000079773.14	2348	11	-140	-8	-140	0	multi-exon	FALSE	canonical	3	651	junction_8	40.2685981876698	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGCCTGGGCTTTACCA	NA	False	NA	17	True	GGGGCT	-44	NA	80458531	80476583	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_80458785_80470047_80470476_80473721_80473763_80473843_80474144_80474227_80474463_80474539_80474626_80474713_80474799_80474918_80475068_80475413_80475498_80475601_80475709_80475855
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007448	chr10	-	2485	9	NIC	ENSMUSG00000003344.15	novel	3026	9	NA	NA	-21	3	combination_of_known_junctions	FALSE	canonical	3	105	junction_4	127.904994038544	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAGTGCTATGTTGTCTGA	NA	False	NA	-2	True	AATAAA	-23	NA	80492349	80478453	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_80479526_80479659_80479807_80480095_80480184_80480436_80480648_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80491963
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007489	chr10	-	4823	31	NNC	ENSMUSG00000020198.9	novel	4805	31	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	85.4602961744354	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTTGTGTCCCCAT	9198	False	NA	-2	True	ATTAAA	-14	NA	80578108	80542789	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_80543818_80544291_80544372_80544580_80544703_80545034_80545121_80545233_80545323_80545600_80545791_80546253_80546302_80546522_80546667_80547945_80548042_80548429_80548502_80548598_80548765_80549390_80549465_80549806_80549995_80550076_80550157_80550937_80551014_80551704_80551847_80552307_80552454_80553532_80553765_80554842_80555223_80555500_80555647_80556953_80557003_80557424_80557475_80558746_80558797_80559366_80559441_80559524_80559665_80562887_80563018_80563715_80563824_80565811_80565893_80566707_80566789_80568684_80568781_80577729
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007562	chr10	+	1192	3	NIC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	7170	junction_2	291	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	14	True	AATAAA	-14	NA	80662519	80665119	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_80662740_80664070_80664468_80664544
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007571	chr10	+	1119	4	NIC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	7082	junction_2	297.278021761149	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	False	NA	19	True	AATAAA	-19	NA	80662519	80665124	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007584	chr10	-	3445	2	FSM	ENSMUSG00000051067.9	ENSMUST00000053986.9	3439	2	-6	0	-6	0	multi-exon	FALSE	canonical	3	10	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGACGTTTAGATATTAT	NA	False	NA	NA	False	ATTAAA	-21	NA	80679879	80668634	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_80671976_80679775
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007602	chr10	+	2836	15	NIC	ENSMUSG00000035206.11	novel	2869	15	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_5	9.35387074740632	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCCTCCTGTCCTGTGAG	NA	False	NA	11	True	ATTAAA	-19	NA	80691144	80704542	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699010_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333_80702495_80703233
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007620	chr10	-	3386	12	FSM	ENSMUSG00000062075.14	ENSMUST00000179022.8	3370	12	-14	-2	-14	2	multi-exon	FALSE	canonical	3	226	junction_8	24.5238962565761	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCAGAGTAGATCTTCAGA	3097	False	NA	1	True	AATAAA	-19	NA	80754093	80737195	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80740846_80740914_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007627	chr10	-	3437	11	NIC	ENSMUSG00000062075.14	novel	3531	12	NA	NA	3	1	intron_retention	FALSE	canonical	3	226	junction_7	23.5501592351305	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCAGAGTAGATCTTCAG	3114	False	NA	0	True	AATAAA	-18	NA	80754076	80737196	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007656	chr10	-	2005	12	FSM	ENSMUSG00000004937.7	ENSMUST00000218208.2	1964	12	-28	-13	-25	11	multi-exon	TRUE	canonical	3	688	junction_11	105.465203223192	401	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTCAGCCTCTTGA	4744	False	NA	0	True	AATAAA	-28	NA	80896040	80879897	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895961
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007700	chr10	+	2609	14	NNC	ENSMUSG00000004929.13	novel	2832	13	NA	NA	-22	-339	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_3	199.332911149804	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCCTGGTCCTCTCTCT	5520	False	NA	10	True	ATTAAA	-16	NA	80905938	80918054	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_80906113_80908986_80909200_80911344_80911494_80912388_80912575_80912776_80912885_80913746_80913850_80914303_80914465_80915291_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917571_80917697
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007735	chr10	+	220	1	Intergenic	novelGene_35	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTGATGCTCGATGGAA	NA	False	NA	NA	False	NA	NA	NA	80952689	80952909	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_+_80952700_80952900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007767	chr10	-	2417	11	FSM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	147	7	-62	-7	multi-exon	FALSE	canonical	3	608	junction_2	40.6104666311531	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGAACATCTGTGGTTTC	NA	False	NA	-5	True	AATAAA	-30	NA	81003610	80989106	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007775	chr10	-	1216	2	FSM	ENSMUSG00000004934.15	ENSMUST00000129549.2	1178	2	-7	-31	-7	31	multi-exon	FALSE	canonical	3	682	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGATGTAAGTTCCAAGTTA	NA	False	NA	NA	False	AAGAAA	-3	NA	81003555	80998845	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_81000025_81003518
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007781	chr10	+	3114	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	-14	-11	-14	11	multi-exon	TRUE	canonical	3	5618	junction_10	706.418033369635	3026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTTGTACAGCGCAC	2167	False	NA	43	True	AATAAA	-31	NA	81012450	81018343	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007792	chr10	+	3081	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1960.19076175897	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2193	False	NA	32	True	AATAAA	-20	NA	81012476	81018332	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015635_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007800	chr10	+	3068	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1962.07709949907	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	32	True	AATAAA	-20	NA	81012479	81018332	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016240_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007803	chr10	+	3337	13	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	0	15	0	intron_retention	FALSE	canonical	3	5618	junction_10	657.372357698943	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	32	True	AATAAA	-20	NA	81012479	81018332	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007804	chr10	+	3065	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1963.88304524089	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	32	True	AATAAA	-20	NA	81012479	81018332	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_81012564_81013498_81013714_81013886_81014060_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007806	chr10	+	3078	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1968.26742963354	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	32	True	AATAAA	-20	NA	81012479	81018332	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015098_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007807	chr10	+	3076	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1962.07709949907	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	32	True	AATAAA	-20	NA	81012479	81018332	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016248_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007812	chr10	+	2997	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_6	1963.35766017686	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	32	True	AATAAA	-20	NA	81012479	81018332	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015209_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007817	chr10	+	3078	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1967.12290733049	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	32	True	AATAAA	-20	NA	81012479	81018332	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015290_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007848	chr10	+	2999	13	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	1025	0	1025	0	3prime_fragment	FALSE	canonical	3	5618	junction_9	705.177573184388	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	3206	False	NA	32	True	AATAAA	-20	NA	81013489	81018332	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr10_+_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007851	chr10	+	2513	10	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	2318	0	-1086	0	3prime_fragment	FALSE	canonical	3	5618	junction_6	791.628248580492	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	4499	False	NA	32	True	AATAAA	-20	NA	81014782	81018332	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr10_+_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007857	chr10	+	1550	9	FSM	ENSMUSG00000034974.14	ENSMUST00000178422.9	1730	9	-13	193	-13	21	multi-exon	FALSE	canonical	3	321	junction_1	26.7675176286483	448	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTCTCCCACGCCCCGC	8542	False	NA	16	True	AATAAA	-21	NA	81018825	81028838	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_81018931_81019809_81019910_81025772_81026134_81026215_81026346_81026431_81026481_81026875_81026903_81027592_81027746_81028130_81028177_81028259
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007874	chr10	-	604	3	FSM	ENSMUSG00000034932.5	ENSMUST00000046114.5	604	3	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	11.5	325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCATGCCCTGTG	3094	False	NA	0	True	AATAAA	-29	NA	81102768	81100546	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_81100832_81101484_81101642_81102606
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007881	chr10	+	2081	11	FSM	ENSMUSG00000004931.12	ENSMUST00000057798.9	2106	11	15	10	2	0	multi-exon	FALSE	canonical	3	174	junction_1	25.7441255435099	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTGGTCAGAAGCTTGA	1335	False	NA	18	True	TATAAA	-21	NA	81104020	81109070	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007894	chr10	+	1973	11	NIC	ENSMUSG00000004931.12	novel	2106	11	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	59.7863696840676	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTGGTCAGAAGCTTG	1363	False	NA	17	True	TATAAA	-20	NA	81104048	81109069	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_81104154_81104691_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007905	chr10	-	3041	21	FSM	ENSMUSG00000034917.9	ENSMUST00000045744.7	3024	21	-10	-7	-10	7	multi-exon	TRUE	canonical	3	41	junction_20	26.4920271025077	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAGACTGAGGACTCTTT	7287	False	NA	15	True	AATAAA	-34	NA	81127111	81109033	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81126881
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007920	chr10	+	4279	18	FSM	ENSMUSG00000034902.18	ENSMUST00000105327.10	2551	18	-8	-1720	-8	1	multi-exon	FALSE	canonical	3	84	junction_16	35.5956725335284	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTCTCCGGTGACTTAT	4984	False	NA	NA	False	AATAAA	-17	NA	81128805	81155808	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_81128987_81140517_81140550_81141019_81141113_81141532_81141664_81142141_81142260_81143317_81143471_81144781_81145082_81146512_81146719_81147476_81147561_81147807_81147857_81148335_81148421_81148741_81148904_81149196_81149336_81149453_81149487_81149828_81149928_81150825_81150953_81153159_81153238_81153599
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007932	chr10	+	2893	9	FSM	ENSMUSG00000034889.9	ENSMUST00000050867.8	2715	9	-175	-3	-175	3	multi-exon	FALSE	canonical	3	160	junction_2	15.2786615905975	288	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCTGATCTGAGTCACAG	5294	False	NA	19	True	AATAGA	-18	NA	81156761	81162079	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_81157281_81158271_81158840_81158954_81159101_81159452_81159616_81159743_81159859_81160136_81160330_81160702_81160823_81160923_81161211_81161297
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007956	chr10	-	1629	9	FSM	ENSMUSG00000020232.18	ENSMUST00000020454.11	1621	9	-3	-5	-1	2	multi-exon	FALSE	canonical	3	490	junction_7	50.249222630803	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAATATTTGTGGCTTTGG	NA	False	NA	-6	True	AATAAA	-22	NA	81186261	81181879	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000007970	chr10	+	3957	10	FSM	ENSMUSG00000034854.9	ENSMUST00000044844.9	3971	10	16	-2	16	2	multi-exon	FALSE	canonical	3	201	junction_9	22.6077666104176	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCAACCCTTTACAGTC	838	False	NA	32	True	AATAAA	-23	NA	81193340	81202061	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_81193721_81195915_81196127_81196932_81197072_81197147_81197334_81197858_81197952_81198038_81198132_81198521_81198693_81198766_81198862_81199386_81199518_81199603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008001	chr10	+	1674	4	ISM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	-4	0	-4	0	intron_retention	FALSE	canonical	3	742	junction_3	22.6862660362314	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	81220257	81224186	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008021	chr10	-	1594	10	FSM	ENSMUSG00000055053.19	ENSMUST00000020461.15	3348	10	11	1743	11	72	multi-exon	TRUE	canonical	3	18	junction_9	5.66557723732532	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTTCCCAACCAAGATGAC	3923	False	NA	NA	False	NA	NA	NA	81262996	81236714	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008067	chr10	-	1990	14	FSM	ENSMUSG00000034758.13	ENSMUST00000072020.9	2015	14	23	2	-2	0	multi-exon	TRUE	canonical	3	36	junction_10	15.2183321404185	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGATTTGTCCTTTACC	NA	False	NA	-17	True	NA	NA	NA	81436711	81426740	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008082	chr10	+	935	5	FSM	ENSMUSG00000054708.18	ENSMUST00000132458.2	829	5	30	-136	30	0	multi-exon	FALSE	canonical	3	22	junction_1	34.9070193514141	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTCGCAAGAGTTGTGT	NA	False	NA	NA	False	AATAAA	-29	NA	81479666	81483444	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_81479728_81480809_81480978_81482138_81482268_81482626_81482693_81482933
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008092	chr10	-	635	3	FSM	ENSMUSG00000063320.12	ENSMUST00000183363.2	406	3	-54	-175	-16	0	multi-exon	FALSE	canonical	3	187	junction_2	131	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACTATACATTCTTGG	NA	False	NA	0	True	NA	NA	NA	82459078	82455684	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_82456052_82458541_82458659_82458927
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008107	chr10	+	2385	14	ISM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	102	2950	102	-1917	5prime_fragment	FALSE	canonical	3	69	junction_7	9.81666256450355	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTATATGGATTCTTCCT	NA	False	NA	17	True	AATAAA	-26	NA	82534942	82575312	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008115	chr10	-	2524	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	-3	33	-3	-33	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGGGTTGCCAGATACA	NA	False	NA	34	True	AATAAA	-10	NA	82599981	82584567	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008149	chr10	+	3515	4	FSM	ENSMUSG00000020255.9	ENSMUST00000020488.9	123179	4	1	119663	1	-119663	multi-exon	FALSE	canonical	3	119	junction_1	5.24933858267454	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGGTGGCACATTCTTG	NA	False	NA	24	True	TTTAAA	-13	NA	83196085	83204706	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_83196238_83197910_83197998_83200242_83200380_83201567
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008161	chr10	+	3539	32	ISM	ENSMUSG00000034560.7	ENSMUST00000038388.7	5858	33	6	4695	6	55	5prime_fragment	TRUE	canonical	3	259	junction_12	27.5310816688411	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGGAAGGTCAGTGCGT	NA	False	NA	NA	False	NA	NA	NA	83379810	83427642	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386744_83386813_83390597_83390681_83391436_83391480_83391876_83391981_83392666_83392788_83394461_83394586_83394681_83394810_83396229_83396391_83400274_83400402_83405831_83405958_83407216_83407325_83407956_83408104_83408221_83408302_83409639_83409746_83410306_83410424_83411880_83412050_83412538_83412694_83415345_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008172	chr10	-	3002	21	FSM	ENSMUSG00000020263.15	ENSMUST00000020500.14	3020	21	18	0	18	0	multi-exon	FALSE	canonical	3	74	junction_1	12.9324205004322	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTATTGTGGTTAGTTT	NA	False	NA	0	True	AATAAA	-18	NA	83484584	83435896	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_83436906_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841_83446931_83447006_83447064_83447313_83447357_83448575_83448765_83450007_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008190	chr10	+	2450	10	FSM	ENSMUSG00000020034.8	ENSMUST00000020223.8	2725	10	271	4	0	-4	multi-exon	FALSE	canonical	2	4	junction_1	3.1308895119123	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGTAATCTTTTCATT	NA	False	NA	NA	False	AATAAA	-18	NA	84412760	84450219	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_84412877_84420611_84420920_84422967_84423104_84425747_84425869_84426951_84427173_84430511_84430649_84440370_84440553_84440749_84440932_84444328_84444502_84449345
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008193	chr10	+	4975	28	FSM	ENSMUSG00000034453.9	ENSMUST00000077175.7	4975	28	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_10	22.7726281441689	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTCTGAGAGGTGATGT	NA	False	NA	22	True	NA	NA	NA	84458155	84563042	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808_84491944_84503185_84503348_84509191_84509393_84510420_84510584_84512746_84512901_84515609_84515685_84516229_84516329_84520040_84520169_84528660_84528871_84531418_84531578_84532812_84532931_84535262_84535406_84549492_84549597_84550108_84550276_84554273_84554388_84556207_84556382_84561514
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008222	chr10	+	2586	15	FSM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	-2	-12	-2	12	multi-exon	FALSE	canonical	3	284	junction_1	18.5957258639765	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGACTTCACTCTTATTT	NA	False	NA	20	True	AATAAA	-31	NA	85707692	85724972	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008232	chr10	-	3957	12	FSM	ENSMUSG00000035529.11	ENSMUST00000037646.9	3877	12	-74	-6	-14	2	multi-exon	FALSE	canonical	3	181	junction_11	19.4396714593195	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTCATGATCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	85752864	85727827	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567_85737696_85738790_85738877_85739994_85740114_85741212_85741363_85743139_85743935_85746086_85746273_85748701_85748836_85752387_85752594_85752671
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008278	chr10	-	2783	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	46	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	880.689577256305	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	-40	True	AATAAA	-16	NA	86541327	86526703	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540153_86540261_86541170
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008284	chr10	-	2774	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	880.689577256305	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	-40	True	AATAAA	-16	NA	86541326	86526703	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539462_86540157_86540261_86541170
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008307	chr10	+	5921	14	FSM	ENSMUSG00000054027.9	ENSMUST00000099396.3	5952	14	28	3	28	-3	multi-exon	FALSE	canonical	3	23	junction_13	8.52632540148867	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATGTGTGTTAGACCTA	NA	False	NA	9	True	AATAAA	-19	NA	86614896	86674250	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_86615176_86640644_86640830_86647393_86647469_86648188_86648245_86651717_86651809_86652816_86652955_86656070_86656132_86656531_86656635_86656773_86656876_86658927_86659010_86660050_86660138_86661018_86661160_86667563_86667629_86669794
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008335	chr10	+	927	8	FSM	ENSMUSG00000020059.10	ENSMUST00000123244.8	927	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	38.7767024521326	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88303144_88303245_88305407_88305507_88308537_88308643_88308766
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008336	chr10	+	1045	9	FSM	ENSMUSG00000020059.10	ENSMUST00000020252.10	1139	9	95	-1	0	0	multi-exon	FALSE	canonical	3	104	junction_4	7.47391296443837	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537_88308643_88308766
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008345	chr10	-	1783	6	FSM	ENSMUSG00000004359.17	ENSMUST00000138734.2	646	6	-19	-1118	-19	0	multi-exon	FALSE	canonical	3	380	junction_4	47.5815090134813	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	88520896	88510633	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88516340_88516437_88520827
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008369	chr10	-	3043	11	FSM	ENSMUSG00000074802.12	ENSMUST00000105298.3	6305	11	4	3258	4	-62	multi-exon	FALSE	canonical	3	41	junction_2	9.03382532485547	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAACCAAGTAAGTTAACT	NA	False	NA	NA	False	GATAAA	-13	NA	89279825	89248382	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270154_89270224_89272364_89272472_89279716
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008372	chr10	-	3040	11	FSM	ENSMUSG00000074802.12	ENSMUST00000099374.9	6748	11	10	3698	-3	-62	multi-exon	FALSE	canonical	3	18	junction_8	13.3450365304858	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAACCAAGTAAGTTAACT	NA	False	NA	NA	False	GATAAA	-13	NA	89279819	89248382	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270151_89270224_89272364_89272472_89279716
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008398	chr10	+	353	1	Intergenic	novelGene_36	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGAGGAAATTGCCACAC	NA	False	NA	NA	False	AGTAAA	-41	NA	89714110	89714463	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_+_89714100_89714500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008400	chr10	+	2366	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020149.6	3232	3	-25	891	-25	-891	multi-exon	FALSE	canonical	3	50	junction_2	27	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGGACAAGGAGATAGTTC	730	False	NA	NA	False	AAAACA	-5	NA	90918893	90933628	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_90919159_90929000_90929119_90931645
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008415	chr10	-	1470	7	FSM	ENSMUSG00000061904.13	ENSMUST00000164505.2	1483	7	30	-17	30	0	multi-exon	FALSE	canonical	3	3785	junction_3	269.875073979713	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	-4	True	AATAAA	-16	NA	90959787	90952652	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008449	chr10	-	1883	8	FSM	ENSMUSG00000019961.18	ENSMUST00000092219.14	1854	8	-24	-5	-10	5	multi-exon	FALSE	canonical	3	63	junction_4	263.470092792177	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTATGACTTATTCTCTG	NA	False	NA	-2	True	ATTAAA	-23	NA	91007454	90984972	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90994609_90994708_90999904_91000064_91001804_91001932_91006899
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008453	chr10	-	3807	4	FSM	ENSMUSG00000019961.18	ENSMUST00000020123.7	3772	4	-30	-5	-26	5	multi-exon	FALSE	canonical	3	173	junction_1	318.417266421838	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTGGTCTCCAGAAACA	NA	False	NA	-13	True	AATAAA	-21	NA	91007470	90996273	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_90999224_90999904_91000064_91001804_91001932_91006899
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008469	chr10	+	3830	17	FSM	ENSMUSG00000020015.11	ENSMUST00000069965.9	3615	17	-215	0	-200	0	multi-exon	FALSE	canonical	3	213	junction_16	22.6329405955126	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTGTGGAGTCAC	NA	False	NA	15	True	TATAAA	-2	NA	92996536	93077190	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_92997063_93044033_93044181_93047772_93047938_93052204_93052339_93053825_93053952_93057448_93057506_93060797_93060913_93061885_93061981_93062574_93062638_93064506_93064631_93068241_93068363_93071299_93071398_93071888_93071995_93072782_93072826_93073655_93073747_93074827_93074906_93075449
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008480	chr10	+	1947	18	NIC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_16	100.405509988178	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGTGTCATTTTTGG	NA	False	NA	22	True	AATACA	-21	NA	93289272	93320737	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318823_93318929_93320524
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008491	chr10	-	493	4	FSM	ENSMUSG00000020018.7	ENSMUST00000020203.7	861	4	9	359	9	-359	multi-exon	FALSE	canonical	3	2132	junction_3	195.841772867792	321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGACTATTTAATGCA	NA	False	NA	0	True	AATAAA	-29	NA	93425559	93419249	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_93419393_93419891_93419957_93423859_93423986_93425400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008494	chr10	+	1177	1	FSM	ENSMUSG00000090610.4	ENSMUST00000170703.4	1060	1	-46	-71	-46	71	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCAGACAGCTTTCTTT	NA	False	NA	NA	False	AATAAA	-31	NA	93614475	93615652	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_93614500_93615700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008527	chr10	+	2296	14	FSM	ENSMUSG00000005897.15	ENSMUST00000105290.9	3732	14	-89	1525	-89	5	multi-exon	FALSE	canonical	3	23	junction_4	6	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCGTTCTCTTCCTGTTTA	NA	False	NA	5	True	AATAAA	-21	NA	93983795	94031548	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_93983965_93992768_93992842_93998111_93998307_93999590_93999670_94001279_94001460_94003271_94003420_94003499_94003591_94006910_94007096_94007839_94008000_94017355_94017478_94024010_94024151_94026480_94026619_94028696_94028803_94031038
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008530	chr10	+	539	4	FSM	ENSMUSG00000020022.18	ENSMUST00000179990.8	566	4	31	-4	-2	4	multi-exon	FALSE	canonical	3	3293	junction_3	309.018877524767	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTGTGCGTTCACACC	NA	False	NA	17	True	ATTAAA	-17	NA	94034896	94056814	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_94034993_94035811_94035895_94039149_94039238_94056542
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008538	chr10	+	3128	16	NNC	ENSMUSG00000020024.8	novel	3639	16	NA	NA	0	145	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_13	58.1305045183297	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGTGTTTAATTTTCC	9504	False	NA	8	True	AATAAA	-17	NA	94524515	94626200	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_94524909_94554713_94554982_94555453_94555605_94561508_94561602_94564452_94564585_94573634_94573887_94575918_94576051_94584802_94584918_94586120_94586266_94586371_94586522_94602303_94602380_94604680_94604839_94606806_94606941_94622605_94622710_94624508_94624699_94625565
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008550	chr10	-	1460	5	NIC	ENSMUSG00000020027.19	novel	4242	5	NA	NA	-2	-106	combination_of_known_splicesites	FALSE	canonical	3	22	junction_3	175.888281303787	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCGGTCACTGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	95252721	95223634	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_95224258_95224751_95224905_95226426_95226508_95250692_95251054_95252479
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008579	chr10	-	709	7	NIC	ENSMUSG00000062981.6	novel	677	6	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_3	1770.46641688944	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGTGTATTTCATTA	NA	False	NA	-8	True	AATAAA	-17	NA	95337800	95316666	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_95316840_95326107_95326275_95326396_95326444_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008627	chr10	+	1821	2	FSM	ENSMUSG00000036478.9	ENSMUST00000038377.9	5001	2	-2	3182	-2	959	multi-exon	FALSE	canonical	3	461	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATCTCTTGTCATGATTA	NA	False	NA	NA	False	AATAAA	-25	NA	96452865	96455489	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_96453335_96454137
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008663	chr10	-	1977	12	FSM	ENSMUSG00000036009.17	ENSMUST00000046638.10	2033	12	-2	58	0	8	multi-exon	FALSE	canonical	3	65	junction_11	25.2121576340063	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAGTGTTTTCATTCTCA	NA	False	NA	NA	False	AATAAA	-17	NA	105677241	105599107	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105676936
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008675	chr10	+	5186	1	FSM	ENSMUSG00000112523.2	ENSMUST00000220086.2	871	1	-2	-4313	-2	4313	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCGCTTCTTGTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	106018879	106024065	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_106018900_106024100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008680	chr10	+	2818	16	ISM	ENSMUSG00000019907.11	ENSMUST00000219263.2	3355	25	-415	16405	-415	7470	5prime_fragment	TRUE	canonical	3	168	junction_12	22.3352238005851	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGGATAAAGAGAAACAAGA	NA	False	NA	NA	False	NA	NA	NA	107997638	108096807	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295_108085512_108086774_108086870_108087700_108087806_108088617_108088786_108089185_108089357_108095616_108095708_108096696
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008701	chr10	+	2223	6	ISM	ENSMUSG00000035873.9	ENSMUST00000095313.5	1745	7	553	-592	-143	592	3prime_fragment	FALSE	canonical	3	675	junction_4	49.1634010214916	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTTGGTATTTAGGGTT	6151	False	NA	15	True	AATAAA	-17	NA	108168534	108250693	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr10_+_108169173_108218590_108218723_108227558_108227594_108245323_108245472_108247824_108247930_108249528
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008712	chr10	+	2735	2	FSM	ENSMUSG00000035759.5	ENSMUST00000040454.5	2744	2	9	0	9	0	multi-exon	FALSE	canonical	3	23	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCATGTAAGTTAATTGT	NA	False	NA	NA	False	AATAAA	-20	NA	111134548	111137588	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_111134769_111135073
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008736	chr10	-	707	1	FSM	ENSMUSG00000074748.4	ENSMUST00000099276.4	3566	1	-11	2870	-5	-511	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCATTTACCCCCCTTCA	NA	False	NA	NA	False	AATAAA	-17	NA	112764911	112764204	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_112764200_112764900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008742	chr10	-	3167	17	FSM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	-1	586	-1	-586	multi-exon	FALSE	canonical	3	391	junction_16	42.5718143259129	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGTGTTTTCAGTTACA	NA	False	NA	-1	True	ATTAAA	-15	NA	115087373	115034362	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008753	chr10	-	2997	7	FSM	ENSMUSG00000069520.7	ENSMUST00000092170.7	3012	7	18	-3	-2	3	multi-exon	FALSE	canonical	3	182	junction_6	17.9017379665278	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTTGTTTTTATTT	NA	False	NA	-1	True	TATAAA	-22	NA	115198154	115176643	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008786	chr10	-	2392	13	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	67	junction_9	144.203246804255	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGTTGGCTTTGATTTG	NA	False	NA	-3	True	AATAAA	-21	NA	116417405	116321067	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116384937_116385081_116417357
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008795	chr10	-	2859	17	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	100	junction_15	145.637593339598	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	-5	True	AATAAA	-19	NA	116417405	116321069	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385081_116417357
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008810	chr10	-	2677	15	FSM	ENSMUSG00000020166.16	ENSMUST00000168036.8	2693	15	11	5	0	0	multi-exon	FALSE	canonical	3	50	junction_13	136.561565692876	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGTGTTGGCTTTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	116417405	116321070	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116384937_116385081_116417357
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008888	chr10	-	3095	12	NNC	ENSMUSG00000020184.16	novel	3145	12	NA	NA	-12	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	156.248795036676	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCTTACACATTTTT	NA	False	NA	-14	True	AATAAA	-26	NA	117546675	117524794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541130_117545600_117545690_117545850_117545934_117546456
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008905	chr10	-	3538	5	FSM	ENSMUSG00000060181.7	ENSMUST00000079041.7	3489	5	-48	-1	-48	1	multi-exon	FALSE	canonical	3	51	junction_4	6.41774882649672	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGGCTGATAAGCAGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	117582318	117569582	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_117572139_117576416_117576500_117576657_117576817_117580789_117580901_117581689
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008927	chr10	+	198	1	Intergenic	novelGene_37	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTCGACCTTAGGTATTT	NA	False	NA	NA	False	NA	NA	NA	117686759	117686957	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_+_117686800_117687000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008933	chr10	+	3100	14	FSM	ENSMUSG00000020212.15	ENSMUST00000020437.13	3074	14	-24	-2	-3	2	multi-exon	FALSE	canonical	3	66	junction_4	15.3152281412244	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGATGCTTCTGTTTTCCT	NA	False	NA	13	True	ATTAAA	-16	NA	117977712	118004904	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885_117984021_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008959	chr10	-	604	2	ISM	ENSMUSG00000020228.12	ENSMUST00000154501.2	3095	12	-80	26116	42	-26116	5prime_fragment	FALSE	canonical	3	65	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTCTACACCAAGGGAGC	NA	False	NA	NA	False	GATAAA	-3	NA	119948850	119946790	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr10_-_119947134_119948589
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008962	chr10	-	178	1	Intergenic	novelGene_38	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTTCTTTTTGAGAC	NA	False	NA	NA	False	NA	NA	NA	119962283	119962105	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_-_119962100_119962300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008986	chr10	+	2222	5	Intergenic	novelGene_39	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	78	junction_3	11.8532695911297	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTTTAAAACTCCCTAAG	NA	False	NA	NA	False	NA	NA	NA	120359252	120366236	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_+_120359328_120359405_120359477_120360126_120360189_120363521_120363638_120364338
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000008988	chr10	+	198	1	Intergenic	novelGene_40	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGGACATTAATCTAGC	NA	False	NA	NA	False	AAGAAA	-1	NA	120658242	120658440	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr10_+_120658200_120658400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009022	chr10	-	3945	25	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-176	-1	intron_retention	FALSE	canonical	0	0	junction_19	297.787649802674	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTCTTTTCCGGAGTTA	NA	False	NA	NA	False	AATAAA	-20	NA	121462413	121425524	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450905_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462009
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009085	chr10	-	6058	34	FSM	ENSMUSG00000034602.16	ENSMUST00000037557.9	5511	34	-355	-192	3	2	multi-exon	FALSE	canonical	3	100	junction_22	19.412065393159	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTGCATTTATTTAAAAT	NA	False	NA	-95	True	AATAAA	-21	NA	122912285	122831061	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_122831739_122835563_122835647_122838600_122838809_122841916_122842041_122842876_122842938_122844040_122844232_122845407_122845537_122846398_122846543_122849272_122849896_122850845_122851045_122852167_122852462_122853979_122854143_122856208_122856385_122858738_122858850_122859814_122859917_122861984_122862076_122862158_122862233_122862311_122862393_122862813_122862919_122865037_122865151_122866014_122866200_122866944_122867027_122868427_122868655_122870209_122870364_122871372_122871510_122871916_122872042_122874365_122874561_122878135_122878262_122878879_122878975_122882202_122882333_122887541_122887674_122888089_122888218_122895092_122895157_122911756
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009092	chr10	-	504	1	ISM	ENSMUSG00000034602.16	ENSMUST00000073792.11	9301	36	125	83817	3	-40589	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAGTTCCCACCTGTCA	NA	False	NA	NA	False	NA	NA	NA	122912285	122911781	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr10_-_122911800_122912300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009100	chr10	+	3972	19	FSM	ENSMUSG00000020105.10	ENSMUST00000074807.8	4016	19	-80	124	5	1	multi-exon	FALSE	canonical	3	53	junction_3	15.6639083466215	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGAAGTTTTTTCAATA	NA	False	NA	19	True	TATAAA	-21	NA	125802041	125851104	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_125802581_125807989_125808062_125808261_125808337_125830286_125830419_125831302_125831447_125832483_125832628_125832930_125833075_125833472_125833617_125834818_125834900_125835957_125836030_125838269_125838342_125838810_125838975_125842556_125842878_125844338_125844621_125845655_125846109_125846769_125846929_125848878_125849023_125849120_125849391_125850544
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009117	chr10	+	4658	9	NNC	ENSMUSG00000078429.10	novel	4817	8	NA	NA	16	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	131.579764306674	96	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGACTGGGAGCTGCTTTT	NA	False	NA	15	True	AATAAA	-21	NA	126814601	126835840	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_126815171_126827399_126827546_126828467_126828507_126828876_126828979_126829720_126829778_126831723_126831817_126831894_126832081_126832229_126835202_126835346
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009229	chr10	-	2265	5	FSM	ENSMUSG00000040415.16	ENSMUST00000116229.2	1994	5	-7	-264	-6	0	multi-exon	FALSE	canonical	3	65	junction_4	30.8332207205151	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031603	127026246	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_127027423_127028477_127029227_127029598_127029673_127030278_127030504_127031562
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009305	chr10	-	2855	22	FSM	ENSMUSG00000040354.15	ENSMUST00000171564.8	2962	22	103	4	-5	0	multi-exon	FALSE	canonical	3	61	junction_3	467.860135698655	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	NA	False	NA	-11	True	AATAAA	-22	NA	127147552	127132094	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_127132310_127132409_127132503_127132585_127132610_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009347	chr10	-	2318	12	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-8	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	599.043066099026	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTGCTTCTGTTTGATCC	NA	False	NA	-4	True	AATGAA	-16	NA	127358321	127352990	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355253_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009406	chr10	+	3741	22	FSM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	38	-4	22	4	multi-exon	FALSE	canonical	3	34	junction_1	71.0521510108266	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCTACTGTACACAATCT	2309	False	NA	-2	True	AATAAA	-26	NA	127478892	127496830	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_127479119_127482759_127482897_127483553_127483693_127483974_127484059_127486564_127486704_127486821_127486875_127487025_127487175_127487818_127487951_127488059_127488249_127488853_127488942_127489075_127489199_127490794_127490888_127491165_127491373_127492792_127492888_127492976_127493114_127493424_127493572_127494065_127494130_127494225_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009434	chr10	+	480	1	FSM	ENSMUSG00000112909.2	ENSMUST00000219845.2	357	1	-34	-89	-34	89	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTATTGTCATTGCTCAG	NA	False	NA	4	True	AATAAA	-32	NA	127847610	127848090	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_127847600_127848100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009472	chr10	+	2180	9	NIC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	-4	0	intron_retention	FALSE	canonical	3	8904	junction_3	880.241577281487	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	22	True	AATAAA	-15	NA	127919170	127926142	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009484	chr10	+	1759	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3284.25005814789	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	22	True	AATAAA	-15	NA	127919174	127926142	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922284_127924189_127924403_127924825_127925028_127925887
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009536	chr10	-	1601	2	FSM	ENSMUSG00000051346.10	ENSMUST00000061995.10	1583	2	-18	0	-18	0	multi-exon	FALSE	canonical	3	299	junction_1	0	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTGTCTATAAAATTGC	NA	False	NA	0	True	AATAAA	-41	NA	128047694	128045776	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_128047261_128047577
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009556	chr10	+	4440	29	FSM	ENSMUSG00000039994.16	ENSMUST00000055539.11	4457	29	15	2	0	0	multi-exon	FALSE	canonical	3	249	junction_23	47.0561431934758	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTTTTGTTGTCTTCCT	6606	False	NA	18	True	AATAAA	-18	NA	128067948	128088808	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009557	chr10	+	4437	29	FSM	ENSMUSG00000039994.16	ENSMUST00000105242.8	4385	29	-54	2	0	0	multi-exon	FALSE	canonical	3	88	junction_23	64.9742001387741	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTTTTGTTGTCTTCCT	6606	False	NA	18	True	AATAAA	-18	NA	128067948	128088808	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086156_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009561	chr10	+	4432	29	NIC	ENSMUSG00000039994.16	novel	4457	29	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	73.5504824551665	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTTTTGTTGTCTTCCT	6606	False	NA	18	True	AATAAA	-18	NA	128067948	128088808	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_128068045_128075710_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009570	chr10	+	4416	24	FSM	ENSMUSG00000040033.17	ENSMUST00000085708.3	4394	24	-19	-3	-2	3	multi-exon	FALSE	canonical	0	0	junction_14	16.4593788801125	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACTGTGAGAGTGTGCCT	2359	False	NA	NA	False	AATAAA	-23	NA	128106425	128128721	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_128106587_128112354_128112493_128112616_128112768_128112991_128113088_128113512_128113603_128113690_128113767_128114153_128114240_128114534_128114687_128116950_128117110_128117218_128117312_128117517_128117578_128117970_128117989_128118580_128118675_128118981_128119027_128119101_128119186_128119352_128119452_128119552_128119689_128119795_128119849_128119966_128120062_128120815_128120953_128121140_128121324_128121529_128121588_128126372_128126900_128127096
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009575	chr10	-	1372	4	FSM	ENSMUSG00000025383.3	ENSMUST00000026449.3	1360	4	-13	1	-13	-1	multi-exon	FALSE	canonical	2	12	junction_1	5.73488351136175	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGGGTCTAAATTTCTA	NA	False	NA	NA	False	NA	NA	NA	128133966	128132008	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_128132845_128132946_128133094_128133358_128133461_128133679
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009587	chr10	+	805	6	NNC	ENSMUSG00000025381.4	novel	1383	6	NA	NA	-138	-3	at_least_one_novel_splicesite	FALSE	canonical	3	205	junction_1	975.319024729857	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAAACTGTGTTGTCTTT	NA	False	NA	30	True	AATGAA	-26	NA	128158577	128163053	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_128158686_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009594	chr10	+	2954	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	-11	-17	-11	17	multi-exon	TRUE	canonical	3	1246	junction_9	132.722869167299	2203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGGCCTGAAAGACTCAT	NA	False	NA	35	True	AATAAA	-35	NA	128173591	128198365	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009609	chr10	-	1447	5	FSM	ENSMUSG00000039914.7	ENSMUST00000220227.2	1434	5	-9	-4	-9	4	multi-exon	FALSE	canonical	3	69	junction_4	16.3248277173145	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCATTTTTTGAGGGGG	6930	False	NA	1	True	AATAAA	-16	NA	128204875	128198964	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204566
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009637	chr10	-	691	6	FSM	ENSMUSG00000090841.3	ENSMUST00000164181.2	665	6	-25	-1	0	1	multi-exon	FALSE	canonical	3	2189	junction_3	223.361948415571	689	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTCTTTCTTTCTTTCC	8199	False	NA	-3	True	AATAAA	-22	NA	128329769	128326727	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009673	chr10	-	2312	3	FSM	ENSMUSG00000039810.12	ENSMUST00000152539.8	992	3	197	-1517	197	1235	multi-exon	FALSE	canonical	3	17	junction_2	46	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAAATTTCTTTGATGGC	NA	False	NA	-8	True	AATAAA	-23	NA	128383311	128379431	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_128381408_128382696_128382761_128383039
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009681	chr10	-	508	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177163.8	544	3	36	0	-5	0	multi-exon	FALSE	canonical	3	15318	junction_2	3514.5	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128384986	128383982	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_128384299_128384526_128384550_128384817
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009684	chr10	-	391	4	FSM	ENSMUSG00000093674.8	ENSMUST00000176010.8	582	4	191	0	-2	0	multi-exon	FALSE	canonical	3	7075	junction_3	6241.33064516071	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128384983	128383982	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009685	chr10	-	434	3	NNC	ENSMUSG00000093674.8	novel	582	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3537.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385034	128383982	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_128384299_128384802_128384843_128384956
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009688	chr10	-	773	2	ISM	ENSMUSG00000093674.8	ENSMUST00000177513.2	680	3	24	-3	-2	0	intron_retention	FALSE	canonical	3	22347	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128384983	128383982	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr10_-_128384299_128384526
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009698	chr10	-	1002	1	NIC	ENSMUSG00000093674.8	novel	544	3	NA	NA	-3	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128384984	128383982	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_-_128384000_128385000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009705	chr10	-	2778	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	-290	-5	-290	3	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	1287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTGTTCTCTTTGTGG	8402	False	NA	-2	True	AATAAA	-17	NA	128402146	128393631	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009742	chr10	-	2464	8	FSM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	-45	-13	-44	8	multi-exon	FALSE	canonical	3	682	junction_2	218.467295455575	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTCATATTTATCCTT	8203	False	NA	-8	True	ATTAAA	-28	NA	128540944	128533799	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009773	chr10	+	2178	12	NIC	ENSMUSG00000025359.11	novel	2130	11	NA	NA	-32	-111	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	18.002295537739	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGGCTTTTGTTGCTGTTC	NA	False	NA	7	True	AATAAA	-18	NA	128541016	128555996	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr10_+_128541154_128542104_128542228_128549913_128550025_128550150_128550298_128551089_128551225_128551395_128551558_128551795_128552420_128553619_128553737_128553926_128554012_128554466_128554673_128554768_128554857_128555753
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009790	chr10	-	2609	5	NNC	ENSMUSG00000047090.14	novel	2335	5	NA	NA	-1004	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	9.90896059130321	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGGAGATGCGCCTCTA	4733	False	NA	-7	True	AATAAA	-18	NA	128641243	128635904	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_-_128637099_128637219_128637381_128637804_128638387_128638966_128639227_128640831
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009798	chr10	+	3038	7	FSM	ENSMUSG00000025354.6	ENSMUST00000217745.2	4133	7	-11	1106	-11	650	multi-exon	FALSE	canonical	3	291	junction_3	32.4242707448191	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTCCTTCTCTTCTTTA	4005	False	NA	NA	False	TATAAA	-19	NA	128641411	128654022	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_128641553_128642036_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009805	chr10	-	1014	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219524.2	724	4	18	-308	18	67	multi-exon	FALSE	canonical	3	322	junction_3	240.049994792751	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTCTCTACTCCTTTGG	NA	False	NA	2	True	TATAAA	-19	NA	128657496	128654283	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_128654885_128655822_128655975_128656129_128656305_128657410
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009806	chr10	-	1093	4	FSM	ENSMUSG00000025353.6	ENSMUST00000026409.5	1573	4	-33	513	18	67	multi-exon	FALSE	canonical	3	462	junction_3	176.577335905703	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTCTCTACTCCTTTGG	NA	False	NA	2	True	TATAAA	-19	NA	128657496	128654283	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_-_128654885_128655822_128655975_128656129_128656384_128657410
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009818	chr10	+	973	12	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	390	junction_1	1520.20222121546	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657772	128713498	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009821	chr10	+	970	12	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	390	junction_1	1539.19360662578	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657772	128713498	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009849	chr10	+	866	8	FSM	ENSMUSG00000025351.15	ENSMUST00000026407.9	1063	8	204	-7	-19	0	multi-exon	FALSE	canonical	3	3700	junction_1	227.971623726484	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	558	False	NA	35	True	ATTAAA	-27	NA	128745771	128748691	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr10_+_128745828_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009923	chr11	-	2794	7	FSM	ENSMUSG00000020448.17	ENSMUST00000077078.12	2787	7	-6	-1	-6	1	multi-exon	FALSE	canonical	3	133	junction_2	17.6391294821737	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTGGAGCTTGTGT	6809	False	NA	-4	True	ATTAAA	-15	NA	3402369	3365980	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382621_3402208
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009935	chr11	+	723	5	FSM	ENSMUSG00000075702.11	ENSMUST00000094469.6	707	5	-15	-1	-15	1	multi-exon	FALSE	canonical	3	143	junction_4	6.04152298679729	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGAGTCTCTTCTTATTTG	NA	False	NA	23	True	ACTAAA	-15	NA	3464851	3467352	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_3465074_3466260_3466297_3466485_3466521_3466841_3466921_3467001
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009947	chr11	-	3318	21	FSM	ENSMUSG00000020439.18	ENSMUST00000020721.15	3335	21	18	-1	18	1	multi-exon	FALSE	canonical	3	70	junction_20	9.90908673894825	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTCTCTGCTGT	8155	False	NA	-5	True	GATAAA	-18	NA	3489274	3467521	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3489111
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009962	chr11	-	1960	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109989.10	1949	10	-7	-4	-7	4	multi-exon	FALSE	canonical	3	49	junction_9	32.7813557369218	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTAGAGTCCTGGTGCCT	NA	False	NA	-7	True	ATTAAA	-21	NA	3882051	3867187	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881975
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000009973	chr11	-	1897	10	NNC	ENSMUSG00000020432.13	novel	1949	10	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	43.1225643434566	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGACGTAGAGTCCTG	NA	False	NA	-13	True	ATTAAA	-15	NA	3882051	3867193	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881531_3881975
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010000	chr11	+	1906	9	FSM	ENSMUSG00000003581.15	ENSMUST00000003677.11	1874	9	-27	-5	-27	5	multi-exon	FALSE	canonical	3	21	junction_6	6.41165930161608	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTAAGACATAAATCTG	7823	False	NA	NA	False	AATAAA	-24	NA	4085174	4091177	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711_4086798_4087211_4087369_4089738_4089859_4089934_4090079_4090297_4090401_4090486
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010027	chr11	+	1932	9	FSM	ENSMUSG00000034412.14	ENSMUST00000180088.2	1921	9	-6	-5	-6	2	multi-exon	FALSE	canonical	3	291	junction_8	26.2963875846094	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGTATAGTTAGGACCC	1576	False	NA	26	True	AATAAA	-17	NA	4136815	4165507	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_4137100_4155756_4155857_4159925_4160034_4162140_4162248_4162784_4162900_4162977_4163044_4163556_4163747_4163836_4163992_4164700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010051	chr11	-	644	5	FSM	ENSMUSG00000020419.12	ENSMUST00000130174.2	583	5	-26	-35	-26	35	multi-exon	FALSE	canonical	3	187	junction_4	8.69985632065266	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTAGACATTTTATTTTGT	NA	False	NA	NA	False	ATTAAA	-25	NA	4391131	4374212	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010056	chr11	+	204	1	Intergenic	novelGene_41	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAGCATTGACAGCCAG	NA	False	NA	NA	False	AAAAAG	-4	NA	4537930	4538134	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_4537900_4538100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010131	chr11	+	2278	20	FSM	ENSMUSG00000034274.12	ENSMUST00000038237.8	2235	20	-41	-2	-18	0	multi-exon	TRUE	canonical	3	228	junction_1	27.0805712775824	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTTGTAGCTCCTTGG	NA	False	NA	23	True	ATTAAA	-20	NA	4845301	4878867	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_4845379_4849790_4849907_4851151_4851296_4852085_4852200_4852334_4852433_4854094_4854242_4855640_4855756_4860626_4860760_4862780_4862859_4864269_4864311_4864521_4864622_4865488_4865598_4868123_4868226_4869732_4869830_4870376_4870492_4871921_4872026_4872138_4872227_4874747_4874864_4876045_4876237_4878674
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010156	chr11	-	3226	6	NIC	ENSMUSG00000034201.14	novel	2847	7	NA	NA	-21	0	intron_retention	FALSE	canonical	3	54	junction_5	47.3894503027836	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTTGTTTTTATTAC	NA	False	NA	0	True	AAGAAA	-25	NA	5015348	5010371	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825_5015095_5015214
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010180	chr11	-	2718	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	-123	-7	-123	7	multi-exon	FALSE	canonical	3	2776	junction_9	796.06296616144	2871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTCTGTTCTCGTGTATG	NA	False	NA	-6	True	AATAAA	-30	NA	5049389	5019681	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010189	chr11	-	2365	16	NIC	ENSMUSG00000009079.17	novel	2588	17	NA	NA	-9	2	combination_of_known_junctions	FALSE	canonical	3	74	junction_8	1335.63462069535	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTCCTCTGTTCTCGT	NA	False	NA	-11	True	AATAAA	-25	NA	5049076	5019686	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010194	chr11	-	2403	17	NNC	ENSMUSG00000009079.17	novel	2588	17	NA	NA	-9	2	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_14	1316.15561746132	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTCCTCTGTTCTCGT	NA	False	NA	-11	True	AATAAA	-25	NA	5049076	5019686	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041986_5043680_5043733_5043868_5043906_5049008
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010211	chr11	-	2278	15	FSM	ENSMUSG00000009079.17	ENSMUST00000073308.11	2269	15	0	-9	0	0	multi-exon	FALSE	canonical	3	21	junction_7	1383.04088950429	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	False	NA	-13	True	AATAAA	-23	NA	5049067	5019688	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028580_5032283_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010224	chr11	-	2429	17	NNC	ENSMUSG00000009079.17	novel	2588	17	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	1363.53153612229	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATCCTCCTCCTCTGTTCT	NA	False	NA	-14	True	AATAAA	-22	NA	5049090	5019689	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_5020122_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010261	chr11	+	1793	9	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	72.0831767821036	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	18	True	AATAAA	-19	NA	5049378	5056093	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_5049478_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010280	chr11	+	1813	9	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	65.8649185834159	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	18	True	AATAAA	-19	NA	5049459	5056093	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_5049567_5049747_5049899_5050384_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010281	chr11	+	1883	8	ISM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	534	-2	-16	0	intron_retention	FALSE	canonical	3	72	junction_2	52.4917875014944	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	18	True	AATAAA	-19	NA	5049459	5056093	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010288	chr11	-	1943	15	FSM	ENSMUSG00000034164.18	ENSMUST00000062821.13	1947	15	4	0	4	0	multi-exon	TRUE	canonical	3	8	junction_2	4.11815294439988	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCGCTTGGTCTCTATGTG	7866	False	NA	NA	False	AATAAA	-19	NA	5102253	5056264	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_5056970_5060689_5060775_5066879_5066925_5078869_5078915_5079008_5079072_5079427_5079481_5079621_5079721_5080631_5080779_5081481_5081572_5081919_5082041_5084348_5084411_5085353_5085432_5093826_5093931_5094294_5094409_5102121
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010342	chr11	+	193	1	Intergenic	novelGene_42	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAACTTTACCTATCCC	NA	False	NA	NA	False	NA	NA	NA	5694840	5695033	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_5694800_5695000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010368	chr11	-	831	3	FSM	ENSMUSG00000020475.4	ENSMUST00000020768.4	840	3	11	-2	11	2	multi-exon	FALSE	canonical	3	39	junction_1	6	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACGTTTCATATAGCTGA	8659	False	NA	NA	False	AATAAA	-17	NA	5753722	5751637	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_5751840_5752998_5753180_5753274
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010371	chr11	-	2913	11	FSM	ENSMUSG00000020474.12	ENSMUST00000020767.4	2924	11	13	-2	13	1	multi-exon	FALSE	canonical	3	32	junction_5	4.04969134626332	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGTTTTACAAGTTTTAA	393	False	NA	NA	False	AATAAA	-20	NA	5788003	5777858	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_5779116_5779310_5779395_5779476_5779726_5779825_5779929_5780067_5780201_5781659_5781781_5784741_5784814_5785415_5785587_5785700_5785800_5786193_5786375_5787560
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010386	chr11	-	1591	11	FSM	ENSMUSG00000020471.12	ENSMUST00000102922.10	1646	11	55	0	-25	0	multi-exon	FALSE	canonical	3	869	junction_10	541.870242770352	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTCACTTGGGCATGT	9560	False	NA	2	True	AATAAA	-25	NA	5828237	5822179	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010394	chr11	-	722	6	ISM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	89	0	89	0	3prime_fragment	FALSE	canonical	3	38	junction_4	23.9115035077261	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848693	5846636	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831_5847937_5848159_5848236_5848425
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010400	chr11	+	2476	7	FSM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	67	-2	67	2	multi-exon	FALSE	canonical	3	192	junction_4	17.3205080756888	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTTGTGTTTACTTTTA	NA	False	NA	21	True	GATAAA	-22	NA	5905759	5917782	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_5906005_5909296_5909380_5911187_5911289_5912336_5912442_5912692_5912759_5914560_5914663_5916008
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010431	chr11	-	1923	14	NNC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_12	271.174412749761	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTGTTGTCTGGCTCTG	4518	False	NA	-2	True	NA	NA	NA	6217743	6208918	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216968_6217417_6217580_6217659
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010456	chr11	+	4159	23	FSM	ENSMUSG00000020456.18	ENSMUST00000003461.15	4127	23	-31	-1	-31	1	multi-exon	FALSE	canonical	3	535	junction_8	60.360778272973	389	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCTGCTGTCGTGTGTT	NA	False	NA	15	True	CATAAA	-19	NA	6241601	6306643	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_6241694_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010491	chr11	+	750	5	FSM	ENSMUSG00000071866.13	ENSMUST00000090749.13	746	5	-2	-2	0	0	multi-exon	FALSE	canonical	3	147	junction_1	16065.018555467	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTGTTTGTATTGGAG	NA	False	NA	2	True	AATAAA	-19	NA	6365867	6369817	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_6365985_6368100_6368132_6368225_6368315_6369112_6369286_6369477
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010505	chr11	-	608	4	FSM	ENSMUSG00000041126.17	ENSMUST00000093346.6	519	4	-86	-3	5	3	multi-exon	FALSE	canonical	3	328	junction_2	1363.86957669061	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCTCAGTATTTCTTC	NA	False	NA	0	True	GATAAA	-19	NA	6394438	6378134	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_6378433_6379095_6379226_6389375_6389454_6394336
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010508	chr11	-	798	6	NNC	ENSMUSG00000041126.17	novel	1633	5	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_3	1566.99393744839	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTGTCTCAGTATTTC	NA	False	NA	-3	True	GATAAA	-16	NA	6394414	6378137	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_6378433_6379095_6379226_6383723_6383838_6387965_6388069_6389375_6389454_6394336
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010536	chr11	-	2354	13	FSM	ENSMUSG00000000384.16	ENSMUST00000189268.7	2347	13	-6	-1	-6	0	multi-exon	FALSE	canonical	3	74	junction_1	134.990406037697	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCCACTGGCTTTTCT	NA	False	NA	-5	True	AATAAA	-19	NA	6576073	6565597	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010537	chr11	-	2429	13	NIC	ENSMUSG00000000384.16	novel	2324	13	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_9	184.937433113652	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCCACTGGCTTTTCT	NA	False	NA	-5	True	AATAAA	-19	NA	6576070	6565597	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570222_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010543	chr11	-	3145	12	FSM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	-30	-825	-6	0	multi-exon	FALSE	canonical	3	438	junction_8	40.423788103394	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCCACTGGCTTTTCT	NA	False	NA	-5	True	AATAAA	-19	NA	6576073	6565597	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010579	chr11	-	1410	4	FSM	ENSMUSG00000000384.16	ENSMUST00000131815.8	853	4	-25	-532	-4	532	multi-exon	FALSE	canonical	3	41	junction_1	235.927013195936	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGAGTTCTGAGTTGTT	NA	False	NA	NA	False	AATAAA	-24	NA	6576047	6572667	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_6573462_6573815_6574284_6575148_6575214_6575964
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010592	chr11	-	2060	8	FSM	ENSMUSG00000020413.12	ENSMUST00000020683.10	4640	8	63	2517	0	-298	multi-exon	FALSE	canonical	3	104	junction_5	37.6557988054094	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATTTCATTTTTGGCTT	NA	False	NA	NA	False	ATTAAA	-7	NA	8961128	8945653	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010603	chr11	+	1319	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	-62	-5	-62	2	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	2020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACTCTGCGGTAGAGT	NA	False	NA	28	True	AATAAA	-22	NA	9068444	9086172	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010616	chr11	+	1424	9	NIC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	905.183821110386	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGACTCTGCGGTAGAG	NA	False	NA	27	True	AATAAA	-21	NA	9068545	9086171	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_9068868_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010630	chr11	+	1144	9	NNC	ENSMUSG00000020407.14	novel	430	5	NA	NA	191	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	933.045676467664	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGACTCTGCGGTAGA	NA	False	NA	26	True	AATAAA	-20	NA	9068977	9086170	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_9069021_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010636	chr11	+	1255	9	NNC	ENSMUSG00000020407.14	novel	430	5	NA	NA	229	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	933.373551960843	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGACTCTGCGGTAGA	NA	False	NA	26	True	AATAAA	-20	NA	9069015	9086170	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_9069170_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010646	chr11	-	2907	3	FSM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	-30	84	-27	-84	multi-exon	FALSE	canonical	3	411	junction_2	109.5	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGGAGTTGCTTCATTTTG	NA	False	NA	-5	True	AATAAA	-24	NA	11758989	11750371	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_11753064_11756095_11756216_11758894
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010649	chr11	-	2756	2	FSM	ENSMUSG00000035455.13	ENSMUST00000171080.8	2844	2	3	85	0	-85	multi-exon	FALSE	canonical	3	48	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGGAGTTGCTTCATTTT	NA	False	NA	-6	True	AATAAA	-23	NA	11758959	11750372	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_11753064_11758894
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010714	chr11	+	2048	8	FSM	ENSMUSG00000078970.6	ENSMUST00000046955.7	2002	8	-40	-6	-40	6	multi-exon	FALSE	canonical	3	217	junction_1	21.86601127274	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGGCGTTGATTCTTT	2431	False	NA	14	True	AATAAA	-16	NA	17161877	17183802	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_17162147_17169013_17169115_17172196_17172328_17174548_17174651_17177160_17177277_17178140_17178276_17179768_17179867_17182706
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010740	chr11	-	1960	1	ISM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	48650	0	48604	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	NA	False	NA	-4	True	AATAAA	-19	NA	20014263	20012303	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_-_20012300_20014300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010744	chr11	-	3641	9	FSM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	-10	0	-10	0	multi-exon	FALSE	canonical	3	719	junction_1	58.8430114796991	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	1326	False	NA	-4	True	AATAAA	-19	NA	20062923	20012303	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010756	chr11	+	196	1	Intergenic	novelGene_43	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTAAGGTTGTAAACGTG	NA	False	NA	NA	False	NA	NA	NA	20130628	20130824	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_20130600_20130800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010758	chr11	+	2859	6	FSM	ENSMUSG00000020149.18	ENSMUST00000020358.12	2827	6	-30	-2	-30	2	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	527	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGCTTGTTGGGTCTATTC	NA	False	NA	NA	False	AATAAA	-26	NA	20151401	20176858	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010777	chr11	-	2169	4	FSM	ENSMUSG00000044066.15	ENSMUST00000109596.8	2171	4	2	0	2	0	multi-exon	FALSE	canonical	3	88	junction_1	18.3726850393609	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTAGCTCAGTTGACT	3057	False	NA	-8	True	AATAAA	-17	NA	20199416	20188385	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_20188589_20189195_20190699_20191885_20192239_20199306
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010788	chr11	-	3943	8	FSM	ENSMUSG00000020142.13	ENSMUST00000109594.8	3926	8	-42	25	-42	0	multi-exon	FALSE	canonical	3	286	junction_4	11.5440593433354	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGAGTAACGTGTTTTTC	7719	False	NA	-5	True	NA	NA	NA	20282755	20252204	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_20254501_20256465_20256601_20257891_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010795	chr11	+	1830	2	FSM	ENSMUSG00000049800.14	ENSMUST00000093292.11	5647	2	-81	3898	0	58	multi-exon	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATATATCTATATTATT	NA	False	NA	22	True	NA	NA	NA	20493252	20599123	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_20493761_20597801
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010797	chr11	+	1915	3	NIC	ENSMUSG00000049800.14	novel	639	3	NA	NA	0	58	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	3	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATATATCTATATTATT	NA	False	NA	22	True	NA	NA	NA	20493252	20599123	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_20493761_20545129_20545215_20597801
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010819	chr11	+	2628	7	FSM	ENSMUSG00000020134.14	ENSMUST00000093290.12	3514	7	12	874	12	47	multi-exon	FALSE	canonical	3	114	junction_5	13.7931142241337	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCTATGAGAAAGTGAAGAA	NA	False	NA	NA	False	NA	NA	NA	21041302	21099449	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_21041679_21086045_21086186_21090563_21090694_21092555_21092658_21096914_21097113_21097257_21097447_21097956
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010836	chr11	-	1784	9	FSM	ENSMUSG00000020321.17	ENSMUST00000239073.2	1958	9	82	92	82	3	multi-exon	FALSE	canonical	3	1237	junction_4	96.8522553944925	818	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCTGTAATTTGCTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	21521852	21506783	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010871	chr11	+	1931	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	0	186	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	1398.53311147978	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	20	True	ATTAAA	-20	NA	22940625	22953337	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952928_22953136
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010901	chr11	+	3405	18	FSM	ENSMUSG00000020280.13	ENSMUST00000058163.11	3559	18	154	0	-27	0	multi-exon	FALSE	canonical	3	91	junction_1	15.9356404539699	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGCATTGTTTTTTTTT	NA	False	NA	10	True	ATTAAA	-17	NA	23616160	23682876	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010909	chr11	-	3758	22	FSM	ENSMUSG00000020273.14	ENSMUST00000020513.10	3747	22	-11	0	-11	0	multi-exon	FALSE	canonical	3	117	junction_1	18.5612914946701	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGTCTTTAATTTTTT	1258	False	NA	-1	True	TTTAAA	-8	NA	23845264	23812645	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_23814057_23816410_23816468_23816629_23816696_23817197_23817419_23817501_23817591_23817956_23818127_23818358_23818481_23820192_23820303_23820742_23820863_23822426_23822481_23823227_23823313_23823789_23823911_23824474_23824548_23826319_23826459_23829873_23829964_23832182_23832295_23834060_23834115_23835163_23835274_23835490_23835573_23840228_23840296_23841742_23841905_23845021
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010911	chr11	+	1683	14	FSM	ENSMUSG00000004018.10	ENSMUST00000004120.9	2724	14	1043	-2	-24	2	multi-exon	FALSE	canonical	3	204	junction_1	21.2544461064019	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTAGTCATTAACACCCCT	NA	False	NA	15	True	AATAAA	-17	NA	26337177	26421878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010920	chr11	+	200	1	Intergenic	novelGene_44	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGAAAGAGGGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	28795741	28795941	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_28795700_28795900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010923	chr11	+	3372	28	NNC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	-13	644	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	125.489275633577	143	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTTAAGGTATGTTTAT	NA	False	NA	NA	False	TTTAAA	-22	NA	29080730	29112472	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103343_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010929	chr11	+	2560	28	NNC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	164.041623745279	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTATTTTTATATCTTA	NA	False	NA	5	True	AATAAA	-17	NA	29080743	29111677	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_29080919_29082844_29082906_29083855_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103343_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010930	chr11	+	2412	14	ISM	ENSMUSG00000020464.16	ENSMUST00000154924.8	3368	27	0	15030	0	1180	5prime_fragment	FALSE	canonical	3	488	junction_10	65.0279866923038	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTATTCACCCTCTCTTCT	NA	False	NA	NA	False	NA	NA	NA	29080743	29096650	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010931	chr11	+	2537	28	NNC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	0	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_19	159.252962838496	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTATTTTTATATCTTA	NA	False	NA	5	True	AATAAA	-17	NA	29080743	29111677	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103258_29103343_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010945	chr11	+	2340	12	NNC	ENSMUSG00000020463.16	novel	2410	12	NA	NA	73	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	94.9315542904465	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATTTTTTATTCTTACT	NA	False	NA	NA	False	AATAAA	-18	NA	29122962	29159640	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_29123448_29124672_29124733_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010949	chr11	-	1594	10	FSM	ENSMUSG00000020462.15	ENSMUST00000020754.10	1664	10	70	0	-51	0	multi-exon	FALSE	canonical	3	210	junction_4	19.5037191768236	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATGTTTTCTCTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	29197339	29171531	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_29171986_29172433_29172584_29172743_29172884_29175856_29175960_29179907_29179960_29180585_29180674_29184357_29184473_29194058_29194161_29195085_29195151_29197014
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010955	chr11	-	923	2	FSM	ENSMUSG00000032673.6	ENSMUST00000039900.4	918	2	-5	0	-5	0	multi-exon	FALSE	canonical	3	382	junction_1	0	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTGTCTTTAATTTG	NA	False	NA	-1	True	AATAAA	-23	NA	29465038	29462875	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_29463677_29464916
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010975	chr11	-	641	5	NNC	ENSMUSG00000020460.16	novel	637	5	NA	NA	5	5	intron_retention	FALSE	canonical	0	0	junction_3	5966.04937856703	427	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGCTTTATTGTACAT	NA	False	NA	-26	True	AATAAA	-21	NA	29497855	29495840	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_29496030_29496290_29496423_29496702_29496789_29497201_29497261_29497680
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010994	chr11	+	207	1	Intergenic	novelGene_45	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCAGCCGCAGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	29616742	29616949	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_29616700_29616900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000010996	chr11	+	2235	7	FSM	ENSMUSG00000020458.17	ENSMUST00000078830.11	3615	7	-33	1413	-33	2	multi-exon	FALSE	canonical	3	504	junction_1	153.756029692063	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTAGTGTTTTAGT	NA	False	NA	16	True	AATAAA	-16	NA	29642913	29692918	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_29643694_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011003	chr11	+	1701	3	ISM	ENSMUSG00000020458.17	ENSMUST00000102843.10	4618	9	-23	35633	-23	-34828	5prime_fragment	FALSE	canonical	0	0	junction_2	120	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGCCCAAATTATAACAG	NA	False	NA	NA	False	AATAGA	-7	NA	29642923	29657283	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_+_29643694_29655534_29655592_29656409
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011043	chr11	-	2251	3	FSM	ENSMUSG00000044502.17	ENSMUST00000109415.2	799	3	-146	-1306	12	0	multi-exon	FALSE	canonical	3	591	junction_1	17	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGACGATCTTTCCC	NA	False	NA	-29	True	AATAAA	-22	NA	31621873	31615180	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_31616934_31619243_31619369_31621500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011112	chr11	-	1285	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	6177.79064795822	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	-32	True	AATAAA	-21	NA	33113077	33102509	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109929_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011121	chr11	-	1275	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	1051	junction_7	5857.07688527306	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	-32	True	AATAAA	-21	NA	33113077	33102509	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110435_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011152	chr11	-	695	7	ISM	ENSMUSG00000057113.14	ENSMUST00000101375.5	966	10	-1	1645	0	-947	5prime_fragment	FALSE	canonical	3	16927	junction_4	1653.27106737589	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGGTTTATCATGGGTAG	NA	False	NA	48	True	AAGAAA	-19	NA	33113077	33106972	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_-_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011163	chr11	+	503	1	Intergenic	novelGene_46	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCGGGTGTGGTAACACA	NA	False	NA	NA	False	NA	NA	NA	33484758	33485261	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_33484800_33485300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011171	chr11	-	2519	12	FSM	ENSMUSG00000069910.3	ENSMUST00000093191.3	2505	12	-11	-3	-11	3	multi-exon	FALSE	canonical	3	139	junction_9	17.9669117367279	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTATTTTTTAATTCT	NA	False	NA	-4	True	AATAAA	-18	NA	34724479	34700013	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_34700670_34704152_34704502_34709949_34710138_34710604_34710715_34711716_34711858_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189_34716367_34721551_34721727_34724314
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011181	chr11	-	2163	15	FSM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	-53	-1	-53	1	multi-exon	FALSE	canonical	3	825	junction_11	73.3093807511866	648	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGGTGTGTTTCTTTGTC	NA	False	NA	0	True	AGTAAA	-18	NA	35725386	35699206	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011199	chr11	-	1833	7	FSM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	116	0	-30	0	multi-exon	FALSE	canonical	3	244	junction_6	119.767367100652	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40583485	40570140	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40583304
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011200	chr11	-	1826	7	FSM	ENSMUSG00000042032.14	ENSMUST00000101347.10	2053	7	227	0	11	0	multi-exon	FALSE	canonical	3	348	junction_6	83.011378068846	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40585803	40570140	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40585629
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011222	chr11	-	3489	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	23	0	23	0	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTGTTTTGGTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	40646115	40639378	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011232	chr11	+	2248	1	FSM	ENSMUSG00000058809.9	ENSMUST00000119713.2	1722	1	-61	-465	-61	465	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCTTCACTAACTCTACA	8621	False	NA	5	True	AATAAA	-28	NA	41389502	41391750	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_41389500_41391800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011235	chr11	-	747	6	FSM	ENSMUSG00000020415.17	ENSMUST00000020687.15	741	6	0	-6	0	6	multi-exon	FALSE	canonical	3	2427	junction_5	2882.94754721622	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGATTGGTATTTTTTG	NA	False	NA	-6	True	AATAAA	-40	NA	43317078	43311070	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317027
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011251	chr11	-	664	5	NNC	ENSMUSG00000020415.17	novel	948	5	NA	NA	284	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4104.06733466935	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCATATGTTCAGATTGT	NA	False	NA	-40	True	AATAAA	-6	NA	43316506	43311104	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316405
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011256	chr11	+	2712	16	FSM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	-33	946	-18	-946	multi-exon	FALSE	canonical	3	184	junction_1	28.1705914425349	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGGATTTTCGTACACTT	NA	False	NA	14	True	AATAAA	-25	NA	43324552	43337862	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011292	chr11	+	3580	11	FSM	ENSMUSG00000019189.14	ENSMUST00000019333.10	3570	11	-10	0	-10	0	multi-exon	TRUE	canonical	3	286	junction_6	37.2538588605261	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTGTATTCCTGTGATGT	9717	False	NA	12	True	AATAAA	-18	NA	44409780	44456347	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_44410102_44415754_44415971_44422102_44422212_44433455_44433548_44439590_44439827_44442470_44442647_44445964_44446106_44448082_44448266_44450798_44450947_44452291_44452649_44454746
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011308	chr11	+	3476	12	FSM	ENSMUSG00000006169.21	ENSMUST00000109261.11	3452	12	-24	0	-24	0	multi-exon	FALSE	canonical	3	124	junction_10	116.535881042055	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGGCCCGCCTCTTTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	45742766	45801452	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_45743020_45774536_45774642_45775158_45775256_45777257_45777367_45778212_45778378_45781448_45781627_45784697_45784945_45785886_45785957_45793037_45793113_45797007_45797295_45798666_45798872_45799767
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011310	chr11	+	3422	12	FSM	ENSMUSG00000006169.21	ENSMUST00000109260.3	3398	12	-24	0	-24	0	multi-exon	FALSE	canonical	3	378	junction_6	52.2164914894813	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGGCCCGCCTCTTTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	45742766	45801452	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_45743020_45774536_45774642_45775158_45775256_45777257_45777367_45778212_45778378_45781448_45781627_45784697_45784945_45785886_45785957_45793037_45793113_45797007_45797295_45798720_45798872_45799767
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011326	chr11	-	1236	6	FSM	ENSMUSG00000011254.17	ENSMUST00000011398.13	2250	6	-5	1019	-5	-1019	multi-exon	FALSE	canonical	3	110	junction_3	12.8	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGGAGTCATTTTTAGC	6296	False	NA	0	True	TATAAA	-19	NA	45846326	45838688	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_45839156_45841022_45841131_45842369_45842459_45843561_45843732_45844882_45845060_45846101
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011332	chr11	+	6333	23	FSM	ENSMUSG00000011256.17	ENSMUST00000011400.8	6383	23	50	0	-16	0	multi-exon	TRUE	canonical	3	430	junction_20	39.4256282802095	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGTTTGGATGGCT	NA	False	NA	15	True	ATTAAA	-20	NA	45946868	46038170	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_45947038_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072_46018251_46019612_46019703_46022449_46022646_46025254_46025364_46027074_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030605_46030832_46031058_46033745_46033899_46034618
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011342	chr11	-	3341	24	NNC	ENSMUSG00000020340.17	novel	6659	31	NA	NA	-6250	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	27.4124831856681	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGGCAGTGTGTGCTTT	NA	False	NA	NA	False	AATGAA	-18	NA	46167746	46086897	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_46087295_46089817_46089966_46091472_46091712_46098213_46098309_46099114_46099188_46112162_46112294_46113436_46113528_46114888_46115033_46130830_46130919_46133113_46133314_46138385_46138506_46140556_46140666_46143430_46143508_46144769_46144871_46145336_46145494_46148375_46148530_46151626_46151775_46152263_46152431_46156730_46156857_46157536_46157657_46161378_46161497_46163435_46163528_46165464_46165570_46167605
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011350	chr11	+	1378	3	FSM	ENSMUSG00000020397.16	ENSMUST00000109232.4	2547	3	-19	1188	3	6	multi-exon	FALSE	canonical	3	262	junction_1	137	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTCATTCTTGGAAAAAAA	NA	False	NA	18	True	AATAAA	-20	NA	46327781	46332360	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_46328019_46330632_46330803_46331389
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011359	chr11	+	208	1	Intergenic	novelGene_47	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTGATGGATTAAAGGGG	NA	False	NA	NA	False	AAAACA	-3	NA	48664786	48664994	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_48664800_48665000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011387	chr11	+	2691	3	FSM	ENSMUSG00000020346.17	ENSMUST00000101293.11	2729	3	35	3	-18	0	multi-exon	TRUE	canonical	3	40	junction_1	25.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTGTGTGTGTGTGTCCT	NA	False	NA	NA	False	AATAAA	-24	NA	49141373	49153854	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_49141483_49142376_49142502_49151397
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011393	chr11	+	2726	3	NNC	ENSMUSG00000020346.17	novel	3151	4	NA	NA	73	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	42.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTGTGTGTGTGTGTCCT	NA	False	NA	NA	False	AATAAA	-24	NA	49141489	49153854	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_49141634_49142376_49142502_49151397
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011457	chr11	-	2010	8	NNC	ENSMUSG00000015837.16	novel	2037	8	NA	NA	-3	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	263.494104027287	369	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGATCCGTACGAGTGT	NA	False	NA	-12	True	AATAAA	-24	NA	50101621	50090976	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_50091775_50093221_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011468	chr11	-	1997	8	NNC	ENSMUSG00000015837.16	novel	2673	8	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	337.037877118055	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCCTGTGATCCGTACG	NA	False	NA	-17	True	AATAAA	-19	NA	50101618	50090981	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_50091775_50093221_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098459_50098647_50098744_50101379
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011489	chr11	-	3783	15	FSM	ENSMUSG00000020368.16	ENSMUST00000020637.9	3779	15	-4	0	-4	0	multi-exon	FALSE	canonical	3	3893	junction_7	208.647160908319	396	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTCTGCAGGTTTCTC	8132	False	NA	-54	True	AATAAA	-22	NA	50216504	50185293	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011521	chr11	-	2688	18	FSM	ENSMUSG00000020375.10	ENSMUST00000020643.4	2688	18	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_10	7.873128931343	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGCCTCCAGCTTGCT	4149	False	NA	0	True	AATAAA	-32	NA	50321952	50280112	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_50280786_50281120_50281199_50282845_50282895_50285747_50285843_50288470_50288601_50289197_50289318_50292264_50292363_50295280_50295449_50297193_50297311_50298649_50298752_50301392_50301463_50305343_50305410_50307066_50307129_50308010_50308135_50310447_50310550_50311203_50311322_50312456_50312631_50321610
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011540	chr11	+	1901	13	FSM	ENSMUSG00000020385.17	ENSMUST00000093132.13	1949	13	48	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	48.5840480221875	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153988	51172591	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_51154097_51157997_51158159_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011579	chr11	-	1734	8	NNC	ENSMUSG00000020358.18	novel	1437	8	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1116.45265489059	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCAAGCCTGGGTAAATG	NA	False	NA	-24	True	AATAAA	-15	NA	51497674	51491702	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_51492301_51492572_51492718_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166_51497414_51497493
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011588	chr11	+	833	5	NNC	ENSMUSG00000001056.4	novel	1042	4	NA	NA	-24	63593	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2326.37668918858	1606	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGATAAGGGACTATCG	NA	False	NA	NA	False	NA	NA	NA	51510537	51578134	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_51510805_51510908_51510979_51513311_51513418_51513918_51514262_51578087
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011595	chr11	-	1988	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	-34	-8	-34	6	multi-exon	FALSE	canonical	3	245	junction_3	13.1581078605222	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATGGTCTTGTGTGTAT	NA	False	NA	-1	True	AATATA	-27	NA	51526757	51514491	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011667	chr11	+	1228	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	184	0	-184	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTATGTCATCTTTTTA	439	False	NA	14	True	ATTAAA	-17	NA	52122863	52137501	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011691	chr11	+	1884	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	139	-1	-136	1	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	1358	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGTTGTTTTTGTTAA	5270	False	NA	31	True	AATAAA	-27	NA	52251825	52280225	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011707	chr11	+	2474	3	FSM	ENSMUSG00000036275.14	ENSMUST00000109057.8	2472	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	140	junction_1	2	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTCTGTTAGTGTGTT	4556	False	NA	NA	False	AATAAA	-16	NA	52287252	52299555	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_52287431_52293872_52294385_52297771
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011712	chr11	-	4695	19	FSM	ENSMUSG00000020361.14	ENSMUST00000020630.8	4618	19	-77	0	-77	0	multi-exon	FALSE	canonical	3	1487	junction_13	205.703280251368	805	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTTCTTAATTTTCTTA	NA	False	NA	-1	True	AATAAA	-22	NA	53191361	53150640	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083_53183142_53190886
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011737	chr11	+	2193	11	ISM	ENSMUSG00000049470.14	ENSMUST00000060945.12	10099	21	-63	21787	-63	418	5prime_fragment	FALSE	canonical	3	75	junction_1	14.9749791318719	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATCAAAATCTTCTCCTC	NA	False	NA	NA	False	NA	NA	NA	53241596	53290870	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_+_53241957_53259486_53259614_53263104_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011761	chr11	+	2118	10	FSM	ENSMUSG00000018398.19	ENSMUST00000108987.8	4436	10	129	2189	-33	8	multi-exon	FALSE	canonical	0	0	junction_3	33.2766184179422	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTCTGGGACTTCTTTAT	NA	False	NA	8	True	AATAAA	-15	NA	53410701	53432733	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_53410867_53422822_53422944_53425259_53425456_53425775_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53432036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011775	chr11	-	2119	12	NNC	ENSMUSG00000020380.17	novel	5153	25	NA	NA	2	-987	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	82.3198759928067	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGAACAGTTGTCCAGTT	NA	False	NA	NA	False	AATAAA	-30	NA	53598144	53575068	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586105_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011838	chr11	+	2151	16	ISM	ENSMUSG00000037533.21	ENSMUST00000207429.2	5164	29	-57	53484	0	3996	5prime_fragment	FALSE	canonical	3	58	junction_8	14.6827184888297	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGCAAATACCGTTTCA	NA	False	NA	NA	False	AAGAAA	-2	NA	54413714	54533686	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585_54525694_54526837_54527042_54530575_54530685_54533536
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011843	chr11	+	703	1	NIC	ENSMUSG00000037533.21	novel	8189	28	NA	NA	0	-29468	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAACCCAACAGCAATGT	NA	False	NA	NA	False	ATTAAA	-12	NA	54413714	54414417	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_54413700_54414400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011854	chr11	+	241	1	Intergenic	novelGene_48	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATAGTTGATCCCATCCC	NA	False	NA	NA	False	NA	NA	NA	54689590	54689831	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_54689600_54689800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011897	chr11	-	2744	18	NNC	ENSMUSG00000020400.18	novel	2787	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	89.655897356481	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	6841	False	NA	-5	True	CATAAA	-18	NA	54853742	54801612	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814919_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54853658
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011901	chr11	-	2873	18	NNC	ENSMUSG00000020400.18	novel	2787	19	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	89.8009332493641	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3644	False	NA	-5	True	CATAAA	-18	NA	54846886	54801612	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814919_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846673
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011913	chr11	-	2664	17	NNC	ENSMUSG00000020400.18	novel	2834	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	87.4065349030037	122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3582	False	NA	-5	True	CATAAA	-18	NA	54846948	54801612	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814919_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000011964	chr11	+	2073	4	FSM	ENSMUSG00000000594.8	ENSMUST00000000608.8	4127	4	-76	2130	-76	-2130	multi-exon	FALSE	canonical	3	325	junction_3	15.195028426722	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGGGCTCCTTTTCTTGG	NA	False	NA	23	True	AATAAA	-16	NA	54988864	55001725	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_54989071_54994412_54994575_54999723_54999907_55000203
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012026	chr11	+	2550	12	NIC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-4465	combination_of_known_junctions	FALSE	canonical	3	48	junction_2	2123.77658316656	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCCACAAGAAAACAAACC	NA	False	NA	NA	False	NA	NA	NA	55360559	55391199	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_55360628_55376451_55376565_55377943_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012030	chr11	+	2098	11	NIC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-4474	combination_of_known_splicesites	FALSE	canonical	3	262	junction_2	2165.33416358769	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAAAAAATTCCCACAAGA	NA	False	NA	NA	False	NA	NA	NA	55360559	55391190	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_55360628_55376451_55376565_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012081	chr11	+	5306	2	Intergenic	novelGene_49	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGCTGGGTAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	57433741	57450923	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_57433952_57445827
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012086	chr11	+	5199	2	Intergenic	novelGene_50	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1950	junction_1	0	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGCTGGGTAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	57445630	57450923	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_57450386_57450479
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012092	chr11	-	1081	2	Intergenic	novelGene_51	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	28	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	57450923	57445632	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_-_57446486_57450695
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012099	chr11	-	5291	1	Intergenic	novelGene_52	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	57450923	57445632	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_-_57445600_57450900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012102	chr11	+	2762	2	Intergenic	novelGene_53	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	822	junction_1	0	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGGTAAGGGGGTATTTA	NA	False	NA	NA	False	NA	NA	NA	57448119	57450928	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_57450433_57450479
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012112	chr11	+	3273	12	FSM	ENSMUSG00000020520.15	ENSMUST00000066987.14	4715	12	-8	1450	-8	-1450	multi-exon	TRUE	canonical	3	24	junction_9	7.98034776267445	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCCGAGCAGCTGATTC	NA	False	NA	35	True	AATAAA	-26	NA	57536259	57676890	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_57536544_57612120_57612224_57616348_57616488_57627803_57627971_57656385_57656572_57660317_57660502_57662293_57662412_57668456_57668565_57671875_57672098_57673031_57673149_57674515_57674666_57675395
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012120	chr11	-	748	4	FSM	ENSMUSG00000087165.8	ENSMUST00000152790.8	714	4	-30	-4	-30	4	multi-exon	FALSE	canonical	3	14	junction_3	7.84573486395988	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCTCAGTGATTAGCA	NA	False	NA	1	True	NA	NA	NA	57692273	57686320	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_57686621_57686851_57687000_57687137_57687224_57692059
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012127	chr11	+	2325	7	NNC	ENSMUSG00000020515.14	novel	231	3	NA	NA	-1285	1	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	266.148872291848	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGAAGTGTGGTCTTTGC	NA	False	NA	15	True	AATAAA	-20	NA	57993693	58009421	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_57994039_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012137	chr11	+	2216	7	FSM	ENSMUSG00000020515.14	ENSMUST00000020822.12	2035	7	-177	-4	-177	4	multi-exon	FALSE	canonical	3	691	junction_3	50.6603614497787	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGTGGTCTTTGCTAG	NA	False	NA	18	True	AATAAA	-23	NA	57994801	58009424	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012150	chr11	+	747	7	FSM	ENSMUSG00000020514.9	ENSMUST00000020820.2	722	7	-10	-15	-10	15	multi-exon	TRUE	canonical	3	1080	junction_1	114.661821603066	370	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTGAAGTGTAGTGTATA	1471	False	NA	27	True	AGTAAA	-30	NA	58062476	58070406	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_58062540_58062619_58062669_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070103
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012164	chr11	+	1961	12	FSM	ENSMUSG00000037243.18	ENSMUST00000049353.9	1860	12	-115	14	-12	0	multi-exon	FALSE	canonical	0	0	junction_6	44.8549544883144	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7661	False	NA	14	True	AATAAA	-21	NA	58197882	58205439	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012189	chr11	+	3016	7	FSM	ENSMUSG00000013646.18	ENSMUST00000073128.7	2977	7	-36	-3	-10	0	multi-exon	FALSE	canonical	3	78	junction_1	22.1716786313832	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTACTGTCTGTTAAAAG	433	False	NA	19	True	AATAAA	-20	NA	58221539	58238554	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_58221619_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012193	chr11	+	3026	7	FSM	ENSMUSG00000013646.18	ENSMUST00000116376.9	3016	7	-10	0	-10	0	multi-exon	FALSE	canonical	3	32	junction_1	38.7101049110206	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTACTGTCTGTTAAAAG	433	False	NA	19	True	AATAAA	-20	NA	58221539	58238554	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_58221629_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012206	chr11	-	1998	4	FSM	ENSMUSG00000020496.11	ENSMUST00000094151.6	1949	4	-35	-14	-35	14	multi-exon	TRUE	canonical	3	1063	junction_2	80.5495016882303	1523	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCTAGTCTTTGTCTACA	NA	False	NA	-2	True	AATAAA	-31	NA	58829777	58823099	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_58824223_58824832_58825058_58827965_58828059_58829220
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012225	chr11	+	3531	4	NNC	ENSMUSG00000020455.17	novel	2301	7	NA	NA	8	0	intron_retention	FALSE	canonical	0	0	junction_2	42.4264068711929	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGCTTATCCTGTG	1674	False	NA	15	True	AATAAA	-15	NA	58868926	58882284	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_58869471_58872066_58872167_58872818_58873050_58879628
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012229	chr11	+	2276	5	NNC	ENSMUSG00000020455.17	novel	2251	6	NA	NA	8	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	39.1176111233802	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTGCTTATCCTGTGGG	1674	False	NA	17	True	AATAAA	-17	NA	58868926	58882286	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_58869471_58872066_58872167_58872818_58873050_58879628_58879756_58881012
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012237	chr11	-	2007	3	FSM	ENSMUSG00000049287.6	ENSMUST00000054523.6	4021	3	-37	2051	-37	-2051	multi-exon	FALSE	canonical	3	10	junction_1	4.5	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTTGTTTCATTTGGG	NA	False	NA	6	True	AGTAAA	-26	NA	59054602	59048245	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_59049486_59049663_59050005_59054176
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012246	chr11	-	1196	8	NNC	ENSMUSG00000020444.20	novel	1078	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	287.687543089685	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1610	False	NA	-20	True	AATAAA	-13	NA	59082638	59074700	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_59075014_59075261_59075606_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082576
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012258	chr11	+	709	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108787.9	718	4	9	0	6	0	multi-exon	FALSE	canonical	3	42	junction_2	235.799820940465	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093323	59096714	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_59093486_59094997_59095082_59095360_59095584_59096474
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012272	chr11	-	2011	5	FSM	ENSMUSG00000048076.15	ENSMUST00000163300.8	1991	5	-19	-1	-19	1	multi-exon	FALSE	canonical	3	71	junction_4	968.523876835259	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTGTGTGTCAGTGCC	1936	False	NA	-1	True	AATAAA	-18	NA	59119007	59102236	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118701
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012307	chr11	-	3686	10	NNC	ENSMUSG00000020472.15	novel	4064	10	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	32.4200821774878	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTTCTTCTATCCTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	59397095	59376345	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_59378641_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394637_59394973_59395081_59396653_59396789_59396989
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012316	chr11	-	3666	10	FSM	ENSMUSG00000020472.15	ENSMUST00000013262.15	4064	10	398	0	-26	0	multi-exon	FALSE	canonical	3	74	junction_1	26.5236907846458	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTTCTTCTATCCTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	59397072	59376345	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394637_59394973_59395081_59396653_59396789_59396989
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012354	chr11	+	653	2	FSM	ENSMUSG00000087249.2	ENSMUST00000151825.2	771	2	-11	129	-11	-129	multi-exon	FALSE	canonical	1	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGTAATGTCTTTCCT	NA	False	NA	NA	False	AATAAA	-18	NA	59700894	59709188	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_59701088_59708728
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012389	chr11	-	3726	19	NIC	ENSMUSG00000020538.16	novel	4299	19	NA	NA	-30	-508	combination_of_known_junctions	FALSE	canonical	3	238	junction_18	63.0911793643156	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTTTTGTTTATCTGG	5286	False	NA	-4	True	ATTAAA	-19	NA	60101248	60090422	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60101161
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012401	chr11	-	3883	19	NIC	ENSMUSG00000020538.16	novel	4299	19	NA	NA	-188	-511	combination_of_known_junctions	FALSE	canonical	3	37	junction_18	97.6774106086452	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTCAGTTTTGTTTATC	1636	False	NA	-7	True	ATTAAA	-16	NA	60113595	60090425	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60113348
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012428	chr11	+	4286	6	FSM	ENSMUSG00000018415.15	ENSMUST00000070681.7	4283	6	-3	0	-3	0	multi-exon	FALSE	canonical	3	383	junction_3	37.1408131305711	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCCAATTTGTAAGTCAAA	NA	False	NA	27	True	AATAAA	-18	NA	60308084	60336103	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_60308671_60315599_60315660_60323158_60323267_60327173_60327276_60329268_60329400_60332804
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012433	chr11	+	1796	13	FSM	ENSMUSG00000020537.10	ENSMUST00000018568.4	1788	13	1	-9	1	9	multi-exon	FALSE	canonical	3	378	junction_10	43.4117879536576	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTTTCTGTGCTTGGT	NA	False	NA	49	True	NA	NA	NA	60345417	60359589	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_60345570_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012439	chr11	+	1960	14	NNC	ENSMUSG00000020537.10	novel	1788	13	NA	NA	11	-34	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	176.054557170758	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTGCGGGGAAGCGGTTC	NA	False	NA	6	True	NA	NA	NA	60345427	60359546	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_60345570_60347047_60347265_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012449	chr11	+	3445	4	FSM	ENSMUSG00000042650.4	ENSMUST00000044250.4	5730	4	-317	2602	-317	1543	multi-exon	FALSE	canonical	3	390	junction_2	6.48074069840786	325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTGATGCTGTGGTGA	NA	False	NA	18	True	AATAAA	-27	NA	60428486	60446736	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_60430022_60438513_60438595_60444539_60444696_60445063
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012470	chr11	-	4089	30	FSM	ENSMUSG00000002812.5	ENSMUST00000002889.5	4060	30	-8	-21	-8	1	multi-exon	TRUE	canonical	3	227	junction_19	35.2603363548522	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACTAGTTTTTAAAAAAAG	NA	False	NA	NA	False	ATTAAA	-25	NA	60618097	60604947	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012507	chr11	-	3649	19	FSM	ENSMUSG00000002814.16	ENSMUST00000002891.11	3741	19	92	0	-8	0	multi-exon	FALSE	canonical	3	121	junction_8	18.9965071513323	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGGTGGCATTCAGTC	NA	False	NA	1	True	AATAAA	-16	NA	60668099	60630883	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_60631528_60633261_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012529	chr11	-	1855	7	FSM	ENSMUSG00000020534.15	ENSMUST00000173260.8	1283	7	-91	-481	83	481	multi-exon	FALSE	canonical	3	1109	junction_4	39.2233632191609	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCCAAATACACATATAACC	NA	False	NA	NA	False	NA	NA	NA	60702008	60687589	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012532	chr11	+	2057	7	FSM	ENSMUSG00000042569.14	ENSMUST00000042281.14	1553	7	33	-537	-15	537	multi-exon	FALSE	canonical	3	194	junction_1	30.3845721085919	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATCAAGCCACCACTATC	NA	False	NA	NA	False	NA	NA	NA	60721489	60749786	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012537	chr11	+	1267	7	NNC	ENSMUSG00000042569.14	novel	1553	7	NA	NA	-10	-277	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	85.6536955160462	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAACCATGTACAGGTCT	NA	False	NA	34	True	AATAAA	-31	NA	60721494	60748972	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_60721587_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012547	chr11	-	1254	3	FSM	ENSMUSG00000043284.13	ENSMUST00000168218.8	1511	3	257	0	6	0	multi-exon	FALSE	canonical	3	26	junction_1	10	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTTCTCTTTTCTGCC	7840	False	NA	-5	True	ATTAAA	-17	NA	60769607	60755277	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_60756175_60766585_60766874_60769538
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012552	chr11	+	202	1	Intergenic	novelGene_54	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAGCTAGGTGAAATCTG	491	False	NA	NA	False	NA	NA	NA	60778073	60778275	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_60778100_60778300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012575	chr11	+	2666	1	NIC	ENSMUSG00000018932.10	novel	2198	12	NA	NA	3	-7394	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATACACATGATATATATAT	NA	False	NA	NA	False	NA	NA	NA	60822882	60825548	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_60822900_60825500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012605	chr11	-	1978	12	NIC	ENSMUSG00000069855.10	novel	2377	17	NA	NA	5521	4	combination_of_known_splicesites	FALSE	canonical	2	5	junction_9	5.65393156562408	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCTGAGAATATTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	61227889	61192452	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_61193266_61193526_61193582_61194746_61194842_61198357_61198491_61199691_61199762_61200786_61200863_61201560_61201670_61203615_61203684_61204469_61204584_61216622_61216721_61219353_61219452_61227640
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012612	chr11	-	2992	7	FSM	ENSMUSG00000001034.18	ENSMUST00000079080.13	3019	7	27	0	-3	0	multi-exon	FALSE	canonical	3	175	junction_5	27.9861076647365	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385095	61379637	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384472_61384781_61384905
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012654	chr11	-	2869	10	FSM	ENSMUSG00000001036.18	ENSMUST00000001063.15	4243	10	4	1370	4	-1369	multi-exon	FALSE	canonical	3	47	junction_6	113.072029921715	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGGAATTTGATTACACAAAA	NA	False	NA	NA	False	NA	NA	NA	61470507	61409444	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61425403_61425440_61426096_61426210_61436975_61437738_61470392
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012657	chr11	+	3087	6	NIC	ENSMUSG00000042377.9	novel	4778	5	NA	NA	-4	-1739	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	3.9293765408777	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACAGTGTCCTGTTGGC	NA	False	NA	NA	False	ATTAAA	-19	NA	61574912	61599038	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_61574995_61575278_61575882_61585935_61586104_61592468_61592594_61593282_61594544_61598190
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012661	chr11	+	3011	5	FSM	ENSMUSG00000042377.9	ENSMUST00000093019.6	4778	5	23	1744	23	-1744	multi-exon	FALSE	canonical	3	16	junction_3	2.38484800354236	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGCCCACAGTGTCCTG	NA	False	NA	NA	False	ATTAAA	-14	NA	61575267	61599033	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_61575882_61585935_61586104_61592468_61592594_61593282_61594544_61598190
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012673	chr11	-	1944	13	NIC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_11	72.6714447970376	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	230	False	NA	-7	True	AATAAA	-22	NA	61652900	61620479	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652305_61652401_61652779
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012675	chr11	-	1801	11	FSM	ENSMUSG00000020528.15	ENSMUST00000151966.8	1734	11	-67	0	9	0	multi-exon	FALSE	canonical	3	27	junction_8	65.5872701063248	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	225	False	NA	-7	True	AATAAA	-22	NA	61652905	61620479	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61647407_61647504_61652779
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012696	chr11	+	2268	10	FSM	ENSMUSG00000042298.19	ENSMUST00000050646.13	3410	10	-34	1176	-23	4	multi-exon	FALSE	canonical	3	145	junction_2	27.2192742167915	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTATGGATTCTAATAATC	NA	False	NA	20	True	AATAAA	-16	NA	62172275	62206076	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_62172520_62172610_62172715_62174422_62174534_62174956_62174996_62175828_62175886_62176649_62176712_62182949_62183045_62199867_62200020_62203841_62204005_62204835
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012710	chr11	-	1866	16	NIC	ENSMUSG00000018501.18	novel	1695	15	NA	NA	2	-12	combination_of_known_junctions	FALSE	canonical	3	168	junction_7	105.040732839959	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAGAAGAAAAGAAGGATG	NA	False	NA	-51	True	GATAAA	-21	NA	62348156	62275594	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012712	chr11	-	1839	15	ISM	ENSMUSG00000018501.18	ENSMUST00000018645.13	9037	46	2	68343	2	-12	5prime_fragment	FALSE	canonical	3	140	junction_7	111.224630218971	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAGAAGAAAAGAAGGATG	NA	False	NA	-51	True	GATAAA	-21	NA	62348156	62275594	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_-_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012715	chr11	-	1792	15	NIC	ENSMUSG00000018501.18	novel	2815	20	NA	NA	-1	-56	combination_of_known_junctions	FALSE	canonical	3	109	junction_1	122.161005335131	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAGAAGAAAAGGAAGAGGA	NA	False	NA	-95	True	AAGAAA	-3	NA	62348150	62275638	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_62275672_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012721	chr11	-	2377	9	FSM	ENSMUSG00000018501.18	ENSMUST00000069456.11	3171	9	-7	801	2	-801	multi-exon	FALSE	canonical	3	310	junction_1	63.6836664695116	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGAATAAATTGGCAT	NA	False	NA	NA	False	NA	NA	NA	62348156	62293009	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012732	chr11	+	2000	7	FSM	ENSMUSG00000014245.9	ENSMUST00000014389.6	2174	7	-25	199	-25	-199	multi-exon	TRUE	canonical	3	156	junction_1	58.9736287580211	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGGAAGCTGGGTGTAGT	NA	False	NA	NA	False	AATAAA	-6	NA	62349260	62405044	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012742	chr11	-	1001	5	NNC	ENSMUSG00000018509.9	novel	1032	5	NA	NA	49	2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	643.161867262045	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTATGACATATTTCTTT	8420	False	NA	-12	True	AATAAA	-21	NA	62430038	62415769	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_62416114_62418317_62418433_62424710_62424781_62427107_62427223_62429681
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012750	chr11	+	1170	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	329	0	-176	0	multi-exon	FALSE	canonical	3	35417	junction_1	0	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	25	True	AATAAA	-24	NA	62442325	62444039	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_62442422_62442965
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012768	chr11	+	472	5	NNC	ENSMUSG00000086841.2	novel	462	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	1867.01606849004	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCAGTGTTTTGGATG	NA	False	NA	NA	False	AATAAA	-18	NA	62493702	62495633	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_62493860_62494060_62494109_62494422_62494473_62495228_62495293_62495480
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012772	chr11	+	225	1	FSM	ENSMUSG00000064437.4	ENSMUST00000082503.4	72	1	-202	49	-202	-49	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTGCCGTCCGATGCGA	NA	False	NA	36	True	NA	NA	NA	62493702	62493927	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_62493700_62493900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012789	chr11	+	3912	6	FSM	ENSMUSG00000047821.17	ENSMUST00000055006.12	3906	6	-6	0	-6	0	multi-exon	TRUE	canonical	3	37	junction_4	2.33238075793812	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTTTGCTAGTATTTG	NA	False	NA	NA	False	TTTAAA	-5	NA	62711050	62733762	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_62711826_62719928_62720025_62724804_62725039_62727504_62727671_62728060_62728157_62731217
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012819	chr11	+	2935	24	NNC	ENSMUSG00000020549.15	novel	2884	24	NA	NA	4	4	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_18	71.7489584835784	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCAGTGTGGGGTCTTCT	NA	False	NA	19	True	AATAAA	-19	NA	64869867	64892430	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889318_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012821	chr11	+	2768	25	FSM	ENSMUSG00000020549.15	ENSMUST00000071891.12	2771	25	4	-1	4	1	multi-exon	FALSE	canonical	3	56	junction_24	61.5767221304718	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTGACAACAGTTTGTAC	NA	False	NA	11	True	AATAAA	-19	NA	64869867	64892896	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820_64892040_64892657
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012894	chr11	-	5900	7	FSM	ENSMUSG00000020902.13	ENSMUST00000021284.4	5738	7	-169	7	17	-7	multi-exon	FALSE	canonical	3	78	junction_5	10.7922297150414	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTCCCAGCCTTTCT	NA	False	NA	-3	True	AATAAA	-14	NA	68277821	68100196	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_68104161_68117361_68117437_68148280_68148335_68151322_68151473_68168248_68168438_68275928_68277011_68277435
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012907	chr11	-	2394	9	FSM	ENSMUSG00000018736.15	ENSMUST00000018880.14	2382	9	-12	0	-12	0	multi-exon	FALSE	canonical	3	185	junction_5	15.9530561335438	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGAGATTGCTTTATTT	NA	False	NA	NA	False	AATAAA	-24	NA	68743973	68712259	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_68713492_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012923	chr11	+	1811	5	FSM	ENSMUSG00000018740.15	ENSMUST00000102606.10	1828	5	17	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	4.96865172858795	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAAGTGTCTTATGTTTA	5575	False	NA	6	True	CATAAA	-18	NA	68858973	68863342	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_68859864_68861549_68861616_68862009_68862163_68862494_68862630_68862775
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012935	chr11	-	6373	28	FSM	ENSMUSG00000020899.17	ENSMUST00000021282.12	6373	28	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_27	41.3360546031052	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTTTTCCGATGGCCT	NA	False	NA	-11	True	NA	NA	NA	68899286	68876522	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881645_68881865_68881986_68882163_68882320_68882510_68882595_68882681_68882863_68883005_68883237_68883480_68883613_68883741_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012948	chr11	+	3985	23	FSM	ENSMUSG00000020898.19	ENSMUST00000021278.14	4164	23	177	2	2	1	multi-exon	FALSE	canonical	3	209	junction_14	54.4241833704208	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTGTTCATCTCTGAG	5263	False	NA	19	True	AATAAA	-19	NA	68906913	68927297	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922239_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012957	chr11	+	3751	22	NIC	ENSMUSG00000020898.19	novel	3978	23	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	3	37	junction_3	97.9944697407626	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5287	False	NA	18	True	AATAAA	-18	NA	68906937	68927296	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_68906992_68911855_68912020_68913202_68913441_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012958	chr11	+	3936	23	NNC	ENSMUSG00000020898.19	novel	4164	23	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_16	96.2792512168433	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5287	False	NA	18	True	AATAAA	-18	NA	68906937	68927296	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922239_68922431_68924008_68924098_68924216_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012961	chr11	+	3947	23	FSM	ENSMUSG00000020898.19	ENSMUST00000152979.8	3976	23	26	3	15	0	multi-exon	FALSE	canonical	3	48	junction_2	94.2205957376466	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5287	False	NA	18	True	AATAAA	-18	NA	68906937	68927296	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_68906992_68911855_68912020_68913218_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000012985	chr11	+	1767	9	NNC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_1	184.266790279746	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936462	68942490	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_68936497_68936694_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013038	chr11	+	747	4	FSM	ENSMUSG00000049299.15	ENSMUST00000102601.10	759	4	12	0	0	0	multi-exon	FALSE	canonical	3	452	junction_2	10.7082522694727	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214900	69216619	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216264
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013041	chr11	+	2500	14	FSM	ENSMUSG00000018470.9	ENSMUST00000018614.3	2538	14	32	6	32	-6	multi-exon	FALSE	canonical	3	22	junction_1	7.85293824331087	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCACGACCACGTCTGAA	NA	False	NA	5	True	AATAAA	-14	NA	69217115	69223862	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_69217750_69218945_69218990_69219076_69219115_69219334_69219415_69220675_69220721_69220808_69220854_69221008_69221053_69221222_69221310_69221565_69221652_69221876_69221998_69222087_69222183_69222285_69222407_69222561_69222651_69222891
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013068	chr11	+	207	1	Intergenic	novelGene_55	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCACTGATTGCTCTACCA	9152	False	NA	NA	False	NA	NA	NA	69432488	69432695	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_69432500_69432700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013073	chr11	-	1913	10	FSM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	-17	-5	-17	4	multi-exon	FALSE	canonical	3	103	junction_6	29.7960143162773	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATTGTGTCTGTTCGGGG	NA	False	NA	1	True	TATAAA	-20	NA	69470167	69452579	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013089	chr11	+	1857	11	FSM	ENSMUSG00000059552.14	ENSMUST00000171247.8	1867	11	11	-1	11	0	multi-exon	FALSE	canonical	3	351	junction_10	535.886405873484	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471195	69482699	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013115	chr11	+	3129	17	FSM	ENSMUSG00000018765.6	ENSMUST00000018909.4	2951	17	-177	-1	-177	1	multi-exon	FALSE	canonical	3	970	junction_6	95.5459436279217	473	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTTCCCATGTTGCCT	NA	False	NA	13	True	AATAAA	-16	NA	69523638	69544124	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_69524225_69530215_69530269_69531059_69531154_69532107_69532180_69532266_69532416_69532872_69532967_69534663_69534781_69539630_69539802_69539975_69540055_69540553_69540664_69541288_69541376_69541669_69541899_69542064_69542263_69542348_69542550_69542803_69542900_69543035_69543134_69543429
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013154	chr11	-	1879	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	-103	-2	3	2	multi-exon	TRUE	canonical	3	9657	junction_10	1402.57834362292	3260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGCTTCTTGTTTCTTTC	NA	False	NA	66	True	AATAAA	-21	NA	69563246	69557759	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013161	chr11	-	1771	11	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4240.16062903282	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559157_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013171	chr11	-	1762	11	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	108	junction_1	4120.88704164528	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	63	True	AATAAA	-18	NA	69563143	69557762	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_69558433_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013188	chr11	-	2026	10	ISM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	1049	1	-46	0	3prime_fragment	FALSE	canonical	3	12659	junction_4	747.862138216515	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	63	True	AATAAA	-18	NA	69562094	69557762	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013227	chr11	-	2475	11	FSM	ENSMUSG00000005204.13	ENSMUST00000005336.9	2313	11	-156	-6	82	6	multi-exon	FALSE	canonical	3	762	junction_10	82.7371742326265	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGTCTTCCTTAAGGGG	8374	False	NA	1	True	AATAAA	-23	NA	69572828	69563934	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013241	chr11	-	2501	10	NIC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	-72	0	intron_retention	FALSE	canonical	3	762	junction_9	86.3109509095664	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8458	False	NA	-5	True	AATAAA	-17	NA	69572744	69563940	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013258	chr11	+	240	1	Intergenic	novelGene_56	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCCAGCTGCCTTCCTA	NA	False	NA	NA	False	AAAAAG	-33	NA	69614379	69614619	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_69614400_69614600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013298	chr11	+	1197	11	FSM	ENSMUSG00000023170.15	ENSMUST00000116358.8	1159	11	-34	-4	-34	3	multi-exon	FALSE	canonical	3	122	junction_1	67.5763272159711	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGAGTGCTGTTTATTT	4057	False	NA	15	True	AATAAA	-25	NA	69804841	69807420	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_69804897_69805098_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013305	chr11	-	1531	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	-60	-128	-60	122	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	9692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGGGTACATTTTGTACA	9881	False	NA	NA	False	AATAAA	-17	NA	69812272	69807417	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013309	chr11	-	1478	7	FSM	ENSMUSG00000078812.11	ENSMUST00000043419.10	1437	7	-33	-8	-33	2	multi-exon	FALSE	canonical	3	627	junction_6	9644.56352477049	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTTGTTTATTTGTTGA	9908	False	NA	-7	True	AATAAA	-28	NA	69812245	69807537	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811988
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013399	chr11	+	3007	15	FSM	ENSMUSG00000020888.17	ENSMUST00000019362.15	2968	15	-31	-8	-31	8	multi-exon	FALSE	canonical	3	488	junction_4	30.5160546571265	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTGGCTCCTTTCTTTG	7104	False	NA	20	True	AATAAA	-24	NA	69891389	69900945	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013431	chr11	-	778	5	FSM	ENSMUSG00000020831.19	ENSMUST00000102569.10	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_3	164.364495862093	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70128356_70128452_70128609
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013444	chr11	-	899	6	FSM	ENSMUSG00000020831.19	ENSMUST00000108576.10	576	6	-125	-198	-15	0	multi-exon	FALSE	canonical	3	107	junction_1	159.443532324143	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128755	70126031	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_70126295_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013473	chr11	-	3440	17	NNC	ENSMUSG00000018921.12	novel	3435	17	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	162.133517027634	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGACCCTGTGCTGCTTTGG	NA	False	NA	-29	True	AATAAA	-11	NA	70300857	70283710	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_70283849_70284587_70286019_70286127_70286335_70286485_70286542_70287111_70287272_70287377_70287530_70287643_70287761_70287840_70287930_70288275_70288364_70288468_70288599_70288891_70289043_70289306_70289367_70292475_70292548_70292742_70292893_70296452_70296559_70297082_70297148_70300589
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013498	chr11	+	942	3	FSM	ENSMUSG00000018923.14	ENSMUST00000019067.8	902	3	-35	-5	-35	5	multi-exon	FALSE	canonical	3	117	junction_2	11	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCTCTCTCTCGCTCTCT	NA	False	NA	NA	False	AATAAA	-25	NA	70342709	70344558	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_70342890_70343033_70343165_70343927
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013525	chr11	-	1695	8	FSM	ENSMUSG00000014606.15	ENSMUST00000014750.15	1711	8	16	0	16	0	multi-exon	FALSE	canonical	3	687	junction_5	58.5020495018625	525	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAAAGTCGTAACT	NA	False	NA	0	True	ATTAAA	-28	NA	70537868	70535021	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013531	chr11	+	1895	9	FSM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	-62	0	-10	0	multi-exon	FALSE	canonical	3	485	junction_5	18.8244355825082	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9128	False	NA	30	True	AATAAA	-31	NA	70538050	70542247	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013539	chr11	+	1301	10	NNC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	144.752662612241	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9186	False	NA	30	True	AATAAA	-31	NA	70538108	70542247	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_70538140_70538675_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013542	chr11	+	1785	9	NIC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	-4	0	intron_retention	FALSE	canonical	3	55	junction_3	157.209205757805	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9186	False	NA	30	True	AATAAA	-31	NA	70538108	70542247	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_70538779_70538854_70538936_70540046_70540121_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013543	chr11	+	1914	8	ISM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	-4	0	-4	0	intron_retention	FALSE	canonical	3	485	junction_5	20.0173394223863	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9186	False	NA	30	True	AATAAA	-31	NA	70538108	70542247	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013559	chr11	-	858	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	9	-6	9	6	multi-exon	FALSE	canonical	3	9692	junction_2	172	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTGGTTTGCACTTG	NA	False	NA	NA	False	AATAAA	-22	NA	70545461	70542669	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_70543048_70543612_70543806_70545174
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013581	chr11	+	1568	12	NNC	ENSMUSG00000060600.16	novel	1564	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	24.5201890168385	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	7115	False	NA	13	True	AATAAA	-16	NA	70548029	70553339	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_70548094_70548585_70548785_70548990_70549087_70549214_70549278_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013601	chr11	-	2419	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	-5	-25	0	0	multi-exon	FALSE	canonical	3	409	junction_6	121.230008016786	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTTTGCTTTACAATT	NA	False	NA	-4	True	AATAAA	-44	NA	70860785	70833902	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013728	chr11	+	4152	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-10	-218	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	555.915138847648	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	46	True	AATAAA	-16	NA	72332170	72342376	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336115_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013760	chr11	+	3519	15	ISM	ENSMUSG00000020788.16	ENSMUST00000021142.8	4593	22	14072	204	-6856	-204	3prime_fragment	FALSE	canonical	3	82	junction_14	12.4533824599535	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCTCAGCCTACCTTGC	NA	False	NA	NA	False	NA	NA	NA	72866066	72883665	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_+_72866477_72867963_72868053_72868170_72868274_72869041_72869174_72869505_72869632_72870952_72871172_72871264_72871601_72872553_72872775_72873449_72873653_72874285_72874372_72878799_72878934_72879288_72879407_72879795_72879914_72880300_72880374_72882514
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013774	chr11	-	2801	1	FSM	ENSMUSG00000050107.3	ENSMUST00000052140.3	2810	1	10	-1	10	1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGAGATTTGGCTTATT	NA	False	NA	-6	True	AATAAA	-18	NA	73029110	73026309	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_73026300_73029100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013780	chr11	-	1339	2	FSM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	-5	-2	-5	2	multi-exon	FALSE	canonical	3	946	junction_1	0	400	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGCGCATGGAATTTGTA	NA	False	NA	-25	True	AATAAA	-27	NA	73067868	73066342	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_73067578_73067764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013807	chr11	-	1683	7	NIC	ENSMUSG00000020774.10	novel	1530	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	6.39444203108363	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGATGACTGTGATA	NA	False	NA	NA	False	ATTAAA	-16	NA	73215460	73195817	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73213904_73214058_73215080
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013831	chr11	+	2010	11	NIC	ENSMUSG00000010554.15	novel	2054	12	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_5	139.204202522769	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCATATTATAAAATAGCTT	8503	False	NA	NA	False	NA	NA	NA	74661664	74708720	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686577_74686644_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013847	chr11	+	3404	15	FSM	ENSMUSG00000038335.14	ENSMUST00000045807.14	3389	15	-17	2	-10	-2	multi-exon	FALSE	canonical	3	655	junction_8	75.3882467968452	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	24	True	AATAAA	-16	NA	74788886	74800166	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013853	chr11	+	3376	15	NNC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	9	-2	intron_retention	FALSE	canonical	3	21	junction_13	208.129485304368	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	24	True	AATAAA	-16	NA	74788912	74800166	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798873_74798947_74799053
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013933	chr11	+	3765	11	NNC	ENSMUSG00000017781.18	novel	3761	12	NA	NA	-12	-4	intron_retention	FALSE	canonical	0	0	junction_4	204.812109017021	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACTTACAGTATGGATTC	NA	False	NA	NA	False	AATAAA	-20	NA	75478910	75519626	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_75479179_75483014_75483046_75489005_75489155_75494214_75494311_75499930_75500006_75503045_75503130_75510065_75510144_75510281_75510393_75511079_75511203_75516290_75516357_75516942
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013936	chr11	-	428	2	Genic_Genomic	ENSMUSG00000081485.6	novel	192	1	NA	NA	-51352	130	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTTTACTAATGTTAAAA	NA	False	NA	NA	False	AATAAA	-27	NA	75542132	75490458	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr11_-_75490871_75542116
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013938	chr11	-	431	2	Genic_Genomic	ENSMUSG00000081485.6	novel	192	1	NA	NA	-51352	130	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTTTACTAATGTTAAAA	NA	False	NA	NA	False	AATAAA	-27	NA	75542132	75490458	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr11_-_75490874_75542116
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013942	chr11	-	379	1	FSM	ENSMUSG00000081485.6	ENSMUST00000122170.2	192	1	-94	-93	-94	93	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGTAAATAAACTAATGACA	NA	False	NA	NA	False	ATTAAA	-27	NA	75490874	75490495	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_75490500_75490900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013950	chr11	+	201	1	Intergenic	novelGene_57	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTGTGAGCCACCATG	3572	False	NA	NA	False	NA	NA	NA	75537064	75537265	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_75537100_75537300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013964	chr11	+	3658	3	FSM	ENSMUSG00000017776.16	ENSMUST00000017920.14	3642	3	16	-32	-9	32	multi-exon	FALSE	canonical	3	225	junction_2	120.5	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATCTTGAAATATTTTTC	2114	False	NA	42	True	NA	NA	NA	75570100	75596923	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_75570491_75583022_75583559_75594191
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000013996	chr11	+	193	1	Intergenic	novelGene_58	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATCCCTAAGAGTCTTC	NA	False	NA	NA	False	NA	NA	NA	76068605	76068798	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_76068600_76068800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014000	chr11	+	2130	5	FSM	ENSMUSG00000069808.14	ENSMUST00000094014.10	2130	5	-1	1	-1	-1	multi-exon	FALSE	canonical	3	42	junction_2	6.18465843842649	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTTATGTGCCCTGGC	3405	False	NA	NA	False	ATTAAA	-16	NA	76092839	76100241	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_76093082_76093377_76093462_76096079_76096282_76097953_76098050_76098735
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014021	chr11	+	1484	4	FSM	ENSMUSG00000038046.5	ENSMUST00000040577.5	1510	4	30	-4	9	4	multi-exon	FALSE	canonical	3	128	junction_1	6.53197264742181	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGTGTTTGCAGGTGTG	580	False	NA	27	True	ATTAAA	-35	NA	76134570	76141449	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_76134913_76135104_76135350_76138172_76138341_76140720
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014040	chr11	+	215	1	Intergenic	novelGene_59	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTTTGTATGGGTGTTTT	NA	False	NA	NA	False	AAAAAG	-5	NA	76302251	76302466	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_76302300_76302500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014043	chr11	-	5241	23	FSM	ENSMUSG00000017631.20	ENSMUST00000072740.13	5394	23	152	1	152	0	multi-exon	FALSE	canonical	3	154	junction_22	28.8783427101686	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCATGGTGTGGTTGTT	6271	False	NA	-2	True	AATAAA	-35	NA	76462209	76307560	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_76310020_76310560_76310709_76312978_76313085_76313873_76314009_76314859_76315000_76315739_76315850_76316092_76316153_76342678_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006_76350173_76352118_76352241_76354353_76354495_76355063_76355117_76359541_76359603_76363314_76363423_76369820_76370007_76377263_76377363_76399713_76399899_76461856
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014051	chr11	+	400	1	FSM	ENSMUSG00000024205.8	ENSMUST00000136893.3	311	1	-39	-50	-39	50	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGGACCTCACCTGTAGC	NA	False	NA	NA	False	AATAAA	-35	NA	76492105	76492505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_76492100_76492500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014054	chr11	+	271	2	Genic_Genomic	ENSMUSG00000024205.8	novel	311	1	NA	NA	-35	50	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGGACCTCACCTGTAGC	NA	False	NA	NA	False	AATAAA	-35	NA	76492109	76492505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr11_+_76492237_76492361
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014057	chr11	-	4285	9	FSM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	8	-4	-4	4	multi-exon	FALSE	canonical	3	228	junction_2	27.7778576387741	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTGGTTATCTGTTCC	NA	False	NA	NA	False	AATAAA	-20	NA	76654397	76617423	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014069	chr11	+	2349	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	152	-4	-73	4	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	377	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGCGTGTCTGGTCTGTA	NA	False	NA	34	True	AATAAA	-23	NA	76836481	76878209	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014091	chr11	+	193	1	Intergenic	novelGene_60	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATAGCTACTCCAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	77280601	77280794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_77280600_77280800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014103	chr11	-	1467	6	NIC	ENSMUSG00000044328.14	novel	1463	7	NA	NA	69	-6	intron_retention	FALSE	canonical	3	179	junction_5	7.1386273190299	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGAGTCGTTGGGAGATT	NA	False	NA	-5	True	ATTAAA	-15	NA	77404127	77398930	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403722_77403792_77403985
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014112	chr11	+	202	1	Intergenic	novelGene_61	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTAGGAGAAAGCCTGGTG	NA	False	NA	NA	False	NA	NA	NA	77490149	77490351	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_77490100_77490400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014157	chr11	+	2697	12	FSM	ENSMUSG00000061981.15	ENSMUST00000100784.9	2699	12	4	-2	4	-1	multi-exon	FALSE	canonical	3	22	junction_2	138.547303733782	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTCATCGTATATTCTG	NA	False	NA	20	True	AATAAA	-17	NA	77928770	77951259	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_77928939_77940303_77940386_77944188_77944280_77945610_77945702_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014171	chr11	-	2018	10	FSM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	-4	0	-4	0	multi-exon	FALSE	canonical	3	178	junction_8	16.2890556304942	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971213	77964201	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014176	chr11	-	1994	10	NNC	ENSMUSG00000020832.15	novel	2014	10	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	63.2223198593271	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTATCTTTTATTTCT	NA	False	NA	-4	True	AATAAA	-20	NA	77971202	77964203	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_77965001_77965105_77965187_77965314_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014187	chr11	-	191	1	Intergenic	novelGene_62	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTAGGGGGTCTAGGTCC	NA	False	NA	NA	False	NA	NA	NA	77977892	77977701	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_-_77977700_77977900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014189	chr11	+	3260	3	FSM	ENSMUSG00000037750.17	ENSMUST00000073705.12	3258	3	5	-7	5	7	multi-exon	FALSE	canonical	3	80	junction_2	31	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCGTGTGTTATGCCA	2603	False	NA	9	True	AAAAAG	-7	NA	77985490	78047533	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_77985618_78033918_78034041_78044522
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014191	chr11	+	3146	3	FSM	ENSMUSG00000037750.17	ENSMUST00000100782.4	2473	3	-41	-632	7	7	multi-exon	FALSE	canonical	3	49	junction_2	46.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCGTGTGTTATGCCA	2605	False	NA	9	True	AAAAAG	-7	NA	77985492	78047533	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_77985618_78033918_78034041_78044634
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014206	chr11	-	2079	7	FSM	ENSMUSG00000017386.11	ENSMUST00000017530.4	2078	7	0	-1	0	1	multi-exon	FALSE	canonical	3	457	junction_4	31.7525152109596	336	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGCCTGTCTCCTCCCAG	NA	False	NA	2	True	NA	NA	NA	78056415	78050224	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_78051375_78051618_78051775_78051858_78052021_78052112_78052275_78052343_78052449_78053207_78053260_78056123
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014264	chr11	+	1712	10	FSM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	-21	-6	-21	1	multi-exon	FALSE	canonical	3	127	junction_1	10.0443461155462	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTCTTTAAAGATTTAT	6353	False	NA	27	True	ATTAAA	-21	NA	78079583	78083020	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014290	chr11	+	3828	24	FSM	ENSMUSG00000002055.10	ENSMUST00000045026.4	3887	24	57	2	-38	-2	multi-exon	FALSE	canonical	3	128	junction_10	25.9765053072448	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTCCAGTCCACTGAATC	2809	False	NA	6	True	AATAAA	-16	NA	78192411	78213281	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_78192537_78192720_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204474_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210405_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014316	chr11	+	1370	5	FSM	ENSMUSG00000002058.14	ENSMUST00000002127.14	1329	5	-41	0	-41	0	multi-exon	FALSE	canonical	3	235	junction_3	19.8557296516648	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	False	NA	19	True	AATAAA	-26	NA	78234266	78239990	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239356
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014324	chr11	+	1968	5	FSM	ENSMUSG00000020829.10	ENSMUST00000001126.4	1978	5	8	2	8	-2	multi-exon	FALSE	canonical	3	60	junction_1	12.7549010188241	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGGGCTTTGGGGCTTTC	8345	False	NA	24	True	AGTAAA	-25	NA	78356530	78362769	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_78356832_78357176_78358030_78359450_78359535_78361520_78361678_78362196
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014366	chr11	+	841	5	FSM	ENSMUSG00000001105.16	ENSMUST00000108275.2	582	5	-16	-243	-1	-5	multi-exon	FALSE	canonical	3	256	junction_1	91.1125677390337	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATGGTGCTGTGTGCAT	NA	False	NA	19	True	AATAAA	-28	NA	78427252	78432558	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720_78431825_78432186
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014401	chr11	-	2473	9	FSM	ENSMUSG00000017677.12	ENSMUST00000017821.12	2476	9	-6	9	-6	7	multi-exon	FALSE	canonical	3	217	junction_4	86.5338625914734	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCGATATTTCTTTCATG	969	False	NA	-17	True	ATTAAA	-19	NA	79145503	79130206	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014411	chr11	-	2627	10	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_4	144.381524757699	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACATTGCCGATATTTCTT	974	False	NA	-22	True	ATTAAA	-14	NA	79145498	79130211	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79134237_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014422	chr11	-	213	1	Intergenic	novelGene_63	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTTCTTTTAAATTTT	NA	False	NA	NA	False	NA	NA	NA	79276661	79276448	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_-_79276400_79276700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014446	chr11	+	1020	2	Intergenic	novelGene_64	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	74	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGGTTGATCACCTC	NA	False	NA	25	True	NA	NA	NA	79864530	79866015	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_79864672_79865136
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014453	chr11	+	4416	16	FSM	ENSMUSG00000017548.16	ENSMUST00000017692.15	4373	16	-43	0	-43	0	multi-exon	FALSE	canonical	3	1594	junction_3	192.466747488726	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGGTCTGCATTGTTAT	NA	False	NA	37	True	TATAAA	-22	NA	79883888	79924949	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_79884426_79886442_79886490_79886570_79886636_79889882_79889952_79898338_79898389_79901383_79901470_79904189_79904422_79905968_79906063_79910504_79910611_79912917_79913096_79915735_79915828_79915993_79916138_79916622_79916781_79919973_79920173_79920832_79920913_79922670
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014477	chr11	+	2329	3	ISM	ENSMUSG00000017550.15	ENSMUST00000017694.7	7272	23	10	37805	10	-10522	5prime_fragment	FALSE	canonical	3	99	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCAAGAAAAGTTCTAAGAA	6009	False	NA	NA	False	AATGAA	-29	NA	79980235	79988812	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_+_79980663_79984980_79986849_79988778
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014500	chr11	+	1963	5	FSM	ENSMUSG00000020707.7	ENSMUST00000017839.3	1984	5	18	3	18	-3	multi-exon	FALSE	canonical	3	52	junction_2	3.96074487943871	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGTGTTGAGTTCATTG	NA	False	NA	31	True	NA	NA	NA	80074694	80090580	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_80075082_80080049_80080194_80084711_80084875_80087698_80087774_80089386
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014515	chr11	+	3025	19	FSM	ENSMUSG00000017686.18	ENSMUST00000092857.13	3687	19	-12	674	-12	0	multi-exon	FALSE	canonical	3	336	junction_18	65.0695971182841	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGGTTTTTTGTCTTC	NA	False	NA	9	True	AATAAA	-20	NA	80099897	80157638	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80156567
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014533	chr11	+	2362	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	-118	-682	0	0	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGATACATGATTGAAT	NA	False	NA	130	True	AATAAA	-18	NA	80274104	80287074	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014552	chr11	-	182	1	Intergenic	novelGene_65	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTCCTCGAGACAGG	NA	False	NA	-2	True	NA	NA	NA	80317447	80317265	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_-_80317300_80317400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014555	chr11	+	1597	14	FSM	ENSMUSG00000017428.17	ENSMUST00000017572.14	2848	14	-25	1276	-15	63	multi-exon	FALSE	canonical	3	918	junction_5	68.6804624122448	808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCTCTCTGCCTCCTG	NA	False	NA	19	True	NA	NA	NA	80319425	80362798	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014566	chr11	+	1749	14	NIC	ENSMUSG00000017428.17	novel	2848	14	NA	NA	-8	26	intron_retention	FALSE	canonical	2	12	junction_3	372.519790189515	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTCTAAATAAAAGGAAAAA	NA	False	NA	-18	True	NA	NA	NA	80319461	80362761	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_80319582_80322530_80322633_80329076_80329202_80329346_80329457_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014576	chr11	+	2466	1	FSM	ENSMUSG00000046010.8	ENSMUST00000056677.8	1591	1	0	-875	0	875	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTTTAATTCTAAAGAACT	NA	False	NA	2	True	NA	NA	NA	82655170	82657636	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_82655200_82657600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014603	chr11	-	2670	10	FSM	ENSMUSG00000018841.18	ENSMUST00000018985.15	3426	10	-26	782	-26	-782	multi-exon	TRUE	canonical	3	107	junction_4	12.9099444873581	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGACCTTTACAGGTGATA	NA	False	NA	NA	False	AATAAA	-25	NA	82781466	82768306	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014616	chr11	-	1751	13	FSM	ENSMUSG00000020692.15	ENSMUST00000103213.10	1783	13	32	0	32	0	multi-exon	TRUE	canonical	3	193	junction_4	34.6180548590215	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCAGCTTCTTGTTCTA	8335	False	NA	-6	True	AATAAA	-22	NA	82799205	82791593	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014623	chr11	-	2338	11	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	32	0	intron_retention	FALSE	canonical	3	193	junction_2	37.0264770130781	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCAGCTTCTTGTTCTA	8335	False	NA	-6	True	AATAAA	-22	NA	82799205	82791593	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014641	chr11	-	2241	12	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	-25	0	intron_retention	FALSE	canonical	3	193	junction_3	36.097892614939	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	8347	False	NA	-10	True	AATAAA	-18	NA	82799193	82791597	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014654	chr11	-	3777	5	FSM	ENSMUSG00000069793.13	ENSMUST00000138797.2	2128	5	30	-1679	30	107	multi-exon	FALSE	canonical	3	11	junction_4	14.1133801762724	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGAAATAGAAACAATAAAG	8650	False	NA	NA	False	NA	NA	NA	82881933	82871130	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_82872813_82872979_82873704_82875382_82875518_82878064_82879135_82881767
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014672	chr11	+	2049	16	FSM	ENSMUSG00000020680.16	ENSMUST00000021018.11	2068	16	19	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	25.2651714597168	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAGTGCATTATTTGTC	8679	False	NA	41	True	AATAAA	-21	NA	83363936	83397569	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014673	chr11	+	873	7	FSM	ENSMUSG00000020680.16	ENSMUST00000134185.8	881	7	25	-17	0	17	multi-exon	FALSE	canonical	3	28	junction_5	8.74960316560446	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTATATTGATTATATTAT	8679	False	NA	NA	False	GATAAA	-23	NA	83363936	83380056	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014683	chr11	-	1089	4	NNC	ENSMUSG00000019122.9	novel	3006	4	NA	NA	-3706	660	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	12.9614813968157	20	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGTCTGCCTCTTTTGC	NA	False	NA	1	True	AATAAA	-20	NA	83473168	83465483	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_83466322_83466668_83466778_83467200_83467273_83473098
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014689	chr11	+	3876	20	FSM	ENSMUSG00000000976.14	ENSMUST00000001002.8	5614	20	6	1732	6	1	multi-exon	TRUE	canonical	3	50	junction_5	6.60059596066985	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAATTGTGTTTTCAAGA	4023	False	NA	5	True	AATAAA	-24	NA	83644527	83672848	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_83644768_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83656987_83657903_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014702	chr11	+	1676	13	NNC	ENSMUSG00000020677.8	novel	3194	15	NA	NA	96	5376	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	93.2170033964953	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCATCTAAACTTACTC	NA	False	NA	16	True	CATAAA	-22	NA	83832983	83848363	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_83833091_83834068_83834272_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014729	chr11	-	1646	12	NIC	ENSMUSG00000018697.15	novel	1822	13	NA	NA	29	-9	combination_of_known_splicesites	TRUE	canonical	3	9	junction_8	148.688370106605	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTGTTGTCACTGTCTTC	NA	False	NA	-9	True	AATAAA	-35	NA	84404319	84313689	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_84313846_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84401024_84401244_84402308_84402405_84402966_84403156_84404117
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014733	chr11	-	2511	5	FSM	ENSMUSG00000018405.8	ENSMUST00000018549.8	2477	5	-34	0	-34	0	multi-exon	FALSE	canonical	0	0	junction_4	44.51404272811	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCTGGAGTTGATTTGT	NA	False	NA	-4	True	AATAAA	-23	NA	84710375	84703886	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_84705338_84705514_84705635_84705733_84705867_84709425_84709520_84709662
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014780	chr11	-	998	5	FSM	ENSMUSG00000020526.13	ENSMUST00000103195.5	998	5	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_2	22.0609949911603	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTTCCCTTAGTAAAC	NA	False	NA	69	True	AATAAA	-16	NA	84807192	84801775	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_84802475_84804047_84804129_84805036_84805112_84806924_84806957_84807081
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014789	chr11	-	2419	13	FSM	ENSMUSG00000018481.10	ENSMUST00000018625.10	6463	13	-2	4046	-2	-4046	multi-exon	TRUE	canonical	3	360	junction_12	22.6180544894756	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCATTCTTATTATGT	NA	False	NA	86	True	AATAAA	-20	NA	85125958	85082133	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_85082726_85085400_85085567_85086891_85087083_85088891_85088978_85091119_85091245_85092241_85092348_85092428_85092497_85095059_85095150_85100765_85100935_85105061_85105186_85105935_85106088_85107261_85107351_85125497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014819	chr11	-	2803	19	ISM	ENSMUSG00000034329.17	ENSMUST00000044423.4	6931	20	12	6848	12	-6848	5prime_fragment	FALSE	canonical	3	64	junction_7	11.8661516742184	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACGAAAAATGTACAAAAGA	NA	False	NA	NA	False	AATAGA	-10	NA	86092007	85955811	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_-_85955928_85965104_85965188_85968682_85968796_85999592_85999715_86001168_86001329_86026084_86026247_86029588_86029730_86029839_86030006_86034082_86034238_86036887_86037021_86039183_86039384_86043413_86043636_86048413_86048705_86077790_86077920_86080557_86080686_86083640_86083815_86088694_86088807_86089697_86089821_86091934
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014835	chr11	+	195	1	Intergenic	novelGene_66	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTAACAGTGGGATGCCAA	7115	False	NA	NA	False	NA	NA	NA	86208549	86208744	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_86208500_86208700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014847	chr11	-	3574	15	FSM	ENSMUSG00000020516.16	ENSMUST00000154617.8	5531	15	29	1928	-2	1234	multi-exon	FALSE	canonical	3	211	junction_9	22.8179351227342	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGCCATGGCAGATGAC	NA	False	NA	NA	False	NA	NA	NA	86435602	86391624	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014867	chr11	-	1963	12	FSM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	-4	828	-4	237	multi-exon	FALSE	canonical	3	615	junction_5	55.9317766244166	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCCGTTTTCTTTAGT	9868	False	NA	0	True	TATAAA	-23	NA	86574666	86475518	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86526000_86526133_86534323_86534492_86551948_86552060_86554308_86554400_86555479_86555616_86556602_86556705_86574565
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014879	chr11	-	6220	32	FSM	ENSMUSG00000047126.18	ENSMUST00000103186.11	6519	32	-3	302	-3	2	multi-exon	TRUE	canonical	3	813	junction_25	122.673691341487	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTAGAATTGCAGTTTTA	NA	False	NA	-5	True	AATAAA	-21	NA	86648394	86585478	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014887	chr11	-	2801	18	FSM	ENSMUSG00000018425.19	ENSMUST00000018569.14	3813	18	114	898	114	-898	multi-exon	FALSE	canonical	3	128	junction_4	18.4312056730034	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGCCTTCTTATTGCTG	8641	False	NA	0	True	ATTAAA	-22	NA	86698458	86660569	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86698263
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014894	chr11	-	4865	5	FSM	ENSMUSG00000018427.9	ENSMUST00000018571.5	4847	5	-18	0	-18	0	multi-exon	FALSE	canonical	3	55	junction_1	6.94172168845741	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGGGAGAATGTCTGTT	NA	False	NA	-8	True	AATAAA	-16	NA	86884551	86827250	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_86831515_86835398_86835508_86836758_86836803_86862634_86862949_86884417
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014926	chr11	+	3573	25	NNC	ENSMUSG00000018548.16	novel	5632	24	NA	NA	-10	30191	at_least_one_novel_splicesite	TRUE	canonical	3	225	junction_24	67.5794671109502	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGTCATAATTTGTTC	1906	False	NA	8	True	NA	NA	NA	87017892	87141700	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077_87109157_87141416
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014940	chr11	-	194	1	Intergenic	novelGene_67	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAATGTGGGAGGGGCC	NA	False	NA	-10	True	NA	NA	NA	87226240	87226046	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_-_87226000_87226200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000014963	chr11	+	4722	18	NIC	ENSMUSG00000018401.18	novel	792	7	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	23.4398294690113	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCCCATGTTGTCTTTC	NA	False	NA	11	True	AATAAA	-24	NA	87486477	87506006	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_87486703_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015026	chr11	+	195	1	Intergenic	novelGene_68	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTGCTGTGTTTACAAC	79	False	NA	NA	False	AAGAAA	-2	NA	87932027	87932222	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_87932000_87932200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015047	chr11	+	1874	5	NIC	ENSMUSG00000018379.18	novel	1209	5	NA	NA	0	3	intron_retention	FALSE	canonical	3	275	junction_4	487.699190075194	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATGGTTGTCCTTTTTCC	6595	False	NA	24	True	AATAAA	-18	NA	87938543	87942319	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_87938859_87939315_87939501_87939868_87940042_87940237_87940922_87941802
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015049	chr11	+	2068	4	NIC	ENSMUSG00000018379.18	novel	2948	3	NA	NA	0	1	intron_retention	FALSE	canonical	3	275	junction_3	562.44999777758	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCATGGTTGTCCTTTTT	6595	False	NA	22	True	AATAAA	-16	NA	87938543	87942317	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_87938859_87939315_87939501_87939868_87940922_87941802
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015056	chr11	+	2684	5	NNC	ENSMUSG00000018379.18	novel	1209	5	NA	NA	0	3	intron_retention	FALSE	canonical	0	0	junction_4	601.003483766941	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATGGTTGTCCTTTTTCC	6595	False	NA	24	True	AATAAA	-18	NA	87938543	87942319	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_87938859_87939315_87939501_87939868_87940042_87940237_87941667_87941737
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015066	chr11	+	1816	11	FSM	ENSMUSG00000018378.14	ENSMUST00000018522.13	3180	11	151	1213	7	-77	multi-exon	FALSE	canonical	2	4	junction_1	5.85234995535981	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGGAAGAAGAAGGATCC	3486	False	NA	NA	False	NA	NA	NA	87990122	88083753	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_87990170_88060390_88061001_88068095_88068224_88073306_88073434_88074064_88074258_88075459_88075544_88077886_88077959_88078819_88078914_88079608_88079668_88080880_88080952_88083422
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015078	chr11	-	3778	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	-19	-1	-19	1	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	540	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTCCATTTTTTCTTC	NA	False	NA	93	True	TATAAA	-8	NA	88755431	88721616	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015101	chr11	-	2093	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	7	-3	7	3	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	526	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCTGAAAATTCTGTTCTG	5208	False	NA	-6	True	AATAAA	-23	NA	88846284	88814842	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015127	chr11	+	1020	4	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	0	-17540	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	433.463570172473	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	9431	False	NA	NA	False	NA	NA	NA	88861077	88864240	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_88861099_88861243_88861306_88861723_88861820_88863399
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015129	chr11	+	1095	4	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	0	-17540	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	300.756084264678	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	9431	False	NA	NA	False	NA	NA	NA	88861077	88864240	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_88861099_88861243_88861381_88861723_88861820_88863399
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015130	chr11	+	753	4	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	0	-17835	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	260.898873554913	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	9431	False	NA	15	True	AATAAA	-26	NA	88861077	88863945	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_88861099_88861243_88861381_88861723_88861820_88863446
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015142	chr11	+	1165	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	0	-17540	intron_retention	FALSE	canonical	0	0	junction_2	527	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	9431	False	NA	NA	False	NA	NA	NA	88861077	88864240	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_88861306_88861723_88861820_88863399
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015143	chr11	+	1118	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	0	-17540	intron_retention	FALSE	canonical	3	287	junction_2	383.5	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	9431	False	NA	NA	False	NA	NA	NA	88861077	88864240	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_88861306_88861723_88861820_88863446
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015206	chr11	-	2094	16	FSM	ENSMUSG00000020541.13	ENSMUST00000020849.9	4308	16	-10	2224	-10	1	multi-exon	FALSE	canonical	3	215	junction_9	19.1849478034792	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTTGTTGTTTTGTCTT	NA	False	NA	0	True	ATTAAA	-19	NA	90578443	90536514	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495_90565646_90574060_90574140_90575887_90575973_90578338
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015252	chr11	+	2311	2	FSM	ENSMUSG00000037573.6	ENSMUST00000041589.6	2288	2	-18	-5	-18	5	multi-exon	FALSE	canonical	3	252	junction_1	0	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGTGGTCTTTGTTTTA	NA	False	NA	NA	False	ATTAAA	-24	NA	94102261	94106326	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_94102558_94104311
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015285	chr11	+	2840	7	NNC	ENSMUSG00000020869.9	novel	2837	7	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	986.721620091277	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTCTCCTTTGTGCTG	NA	False	NA	27	True	ATTAAA	-18	NA	94520593	94536042	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_94520936_94522906_94522967_94525370_94525530_94525737_94525847_94529356_94529430_94532045_94532220_94534119
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015293	chr11	+	2834	7	NNC	ENSMUSG00000020869.9	novel	2837	7	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1002.79316854917	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTCTCCTTTGTGCTG	NA	False	NA	27	True	ATTAAA	-18	NA	94520599	94536042	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_94520940_94522906_94522967_94525370_94525530_94525737_94525843_94529356_94529430_94532045_94532220_94534119
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015306	chr11	-	2483	9	FSM	ENSMUSG00000039055.5	ENSMUST00000039949.5	2444	9	-15	-24	-15	24	multi-exon	TRUE	canonical	3	178	junction_8	32.4422563950167	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCGTGTAGTGATGCTGA	4388	False	NA	19	True	AATAAA	-42	NA	94544805	94535797	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540833_94540965_94541048_94541850_94544521
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015331	chr11	-	3426	11	FSM	ENSMUSG00000020868.16	ENSMUST00000116349.9	3442	11	22	-6	22	6	multi-exon	FALSE	canonical	3	112	junction_7	13.508885964431	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTGTTTGCTTCCTGC	2227	False	NA	0	True	AATATA	-22	NA	94568319	94554670	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_94555736_94557023_94557358_94557924_94558121_94558409_94558673_94558886_94559064_94559150_94559368_94559552_94559634_94560266_94560470_94560732_94560909_94561133_94561627_94568098
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015351	chr11	-	4957	26	FSM	ENSMUSG00000001507.17	ENSMUST00000001548.14	4861	26	-97	1	-10	-1	multi-exon	FALSE	canonical	3	46	junction_7	7.12179752590594	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTGTCTGCTCCTACC	8775	False	NA	-1	True	AATAAA	-21	NA	94967637	94935300	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604_94950694_94952703_94952901_94953378_94953590_94953960_94954048_94956588_94956839_94959050_94959131_94959537_94959666_94966956
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015357	chr11	+	200	1	Intergenic	novelGene_69	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGGAAAATTTAAAGAAAAG	262	False	NA	NA	False	NA	NA	NA	94946079	94946279	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_94946100_94946300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015370	chr11	-	3414	14	NIC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	3	152	junction_1	222.401444165419	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACTGCTCTGAAGCTT	NA	False	NA	-4	True	AATAAA	-18	NA	95201032	95165083	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015390	chr11	+	2325	8	FSM	ENSMUSG00000038893.13	ENSMUST00000037502.7	2317	8	-8	0	-8	0	multi-exon	FALSE	canonical	3	42	junction_6	7.85324578679129	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGGTTTTCTGAATACC	NA	False	NA	13	True	AATAAA	-15	NA	95227835	95272698	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_95228088_95254824_95254995_95262263_95262360_95265807_95265919_95266454_95266590_95268308_95268508_95269644_95269796_95271487
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015420	chr11	-	3422	6	NNC	ENSMUSG00000000120.7	novel	3446	6	NA	NA	33	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	28.7513477944948	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATGCCAAGAGAATTTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	95478528	95459638	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_95461922_95462641_95462807_95465016_95465270_95468799_95469160_95471778_95471921_95478309
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015421	chr11	-	3418	6	NNC	ENSMUSG00000000120.7	novel	3446	6	NA	NA	37	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	29.4441844852256	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATGCCAAGAGAATTTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	95478524	95459638	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_95461922_95462645_95462807_95465016_95465270_95468799_95469160_95471778_95471921_95478305
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015426	chr11	+	1799	7	FSM	ENSMUSG00000038845.12	ENSMUST00000125172.8	1799	7	0	0	0	0	multi-exon	FALSE	canonical	3	4384	junction_3	774.980806213935	617	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGGTGTGTTTTCAATT	NA	False	NA	11	True	AATAAA	-25	NA	95557782	95571599	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015471	chr11	-	2434	14	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-35	727	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	177.836138924832	303	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCTTATGGCTGAGCTC	NA	False	NA	27	True	AAAAAG	-1	NA	95873472	95853534	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873327
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015475	chr11	-	2840	15	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-4	727	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	171.629584529341	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCTTATGGCTGAGCTC	NA	False	NA	27	True	AAAAAG	-1	NA	95896770	95853534	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866081_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015476	chr11	-	2421	14	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-25	727	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	204.16338161025	74	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCTTATGGCTGAGCTC	NA	False	NA	27	True	AAAAAG	-1	NA	95873462	95853534	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859306_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873327
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015495	chr11	-	2837	15	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-6	727	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	170.502872679133	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCTTATGGCTGAGCTC	NA	False	NA	27	True	AAAAAG	-1	NA	95896772	95853534	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864001_95864760_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015511	chr11	-	2832	15	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-4	726	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	173.487648798738	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTATGGCTGAGCT	NA	False	NA	26	True	AAGAAA	-8	NA	95896770	95853535	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870493_95895048_95895110_95896284
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015514	chr11	-	2480	15	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-3	726	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	240.619364498015	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTATGGCTGAGCT	NA	False	NA	26	True	AAGAAA	-8	NA	95873440	95853535	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859306_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95871874_95871957_95873327
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015516	chr11	-	2405	14	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-3	726	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	177.836138924832	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTATGGCTGAGCT	NA	False	NA	26	True	AAGAAA	-8	NA	95873440	95853535	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873323
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015519	chr11	-	2836	15	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-4	726	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	170.556950809364	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTATGGCTGAGCT	NA	False	NA	26	True	AAGAAA	-8	NA	95896770	95853535	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859306_95859620_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015575	chr11	-	635	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107684.2	596	5	-30	-9	21	6	multi-exon	FALSE	canonical	3	5157	junction_4	2293.78611688187	1042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGCCTGTCTTTCTA	3500	False	NA	0	True	NA	NA	NA	95966475	95963806	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966382
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015586	chr11	-	733	6	NNC	ENSMUSG00000006057.16	novel	4715	5	NA	NA	21	1	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	4910.35017081267	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGCCTGTCT	3500	False	NA	-5	True	NA	NA	NA	95966475	95963811	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_95964045_95964348_95964528_95964787_95964866_95965414_95965588_95965812_95965860_95966452
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015606	chr11	-	2181	8	FSM	ENSMUSG00000020876.15	ENSMUST00000107661.10	2197	8	18	-2	-10	2	multi-exon	FALSE	canonical	3	35	junction_6	17.839419776416	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTTGTTGCAATTTGTG	NA	False	NA	-14	True	AATAAA	-15	NA	96668367	96658700	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96667793_96667888_96668280
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015621	chr11	+	2201	5	ISM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	-22	491	0	0	5prime_fragment	FALSE	canonical	3	583	junction_4	77.1508263079534	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679962	96698975	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015639	chr11	-	3592	4	FSM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	-44	-1	-44	1	multi-exon	FALSE	canonical	3	378	junction_3	463.171914327955	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTCCCCCCTCTCCCTT	NA	False	NA	-5	True	AATAAA	-34	NA	96714883	96708238	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714770
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015674	chr11	-	3377	3	NIC	ENSMUSG00000038615.18	novel	3547	4	NA	NA	-6	0	intron_retention	FALSE	canonical	3	71	junction_1	153.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	-23	True	AATAAA	-16	NA	96714845	96708256	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_96711343_96712929_96713146_96714770
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015675	chr11	-	4570	5	FSM	ENSMUSG00000038615.18	ENSMUST00000167149.8	4596	5	9	17	8	0	multi-exon	FALSE	canonical	3	79	junction_4	530.254891538023	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	-23	True	AATAAA	-16	NA	96720319	96708256	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720236
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015712	chr11	+	936	9	FSM	ENSMUSG00000018672.16	ENSMUST00000018816.14	930	9	-6	0	0	0	multi-exon	FALSE	canonical	3	213	junction_8	11.8420595759353	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCCTTTCTTGACTTTG	769	False	NA	11	True	AATAAA	-22	NA	96740695	96752029	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_96740823_96741498_96741568_96744260_96744343_96744883_96744976_96745409_96745466_96746081_96746160_96747497_96747550_96748378_96748418_96751688
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015720	chr11	-	2004	13	ISM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	96	337	-8	53	intron_retention	FALSE	canonical	3	982	junction_6	81.183776430735	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGCACATGTTTTCTTA	NA	False	NA	-6	True	NA	NA	NA	96807226	96798588	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015735	chr11	-	1840	15	NNC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_12	382.031679421527	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	-41	True	AATAAA	-15	NA	96807240	96798641	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806541_96806604_96806976_96807023_96807209
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015754	chr11	-	3030	7	NNC	ENSMUSG00000018678.14	novel	3055	7	NA	NA	33	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	203.145883541853	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCGTTTGGCAGTTGGG	NA	False	NA	-13	True	AATAAA	-20	NA	96868504	96844162	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_96845397_96846600_96846795_96846930_96847106_96848249_96848563_96851863_96852836_96854186_96854271_96868446
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015772	chr11	+	1553	8	FSM	ENSMUSG00000020877.12	ENSMUST00000021249.11	1530	8	-21	-2	-21	2	multi-exon	FALSE	canonical	3	80	junction_5	16.9597362320652	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGATCTCAAGTCTATTGA	NA	False	NA	19	True	AATAAA	-25	NA	96920742	96924786	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_96920882_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96923797_96923889_96924056_96924144_96924326_96924491
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015780	chr11	+	1715	5	FSM	ENSMUSG00000001445.11	ENSMUST00000001485.10	1708	5	-5	-2	-5	2	multi-exon	FALSE	canonical	3	440	junction_1	35.8643276808586	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATGTTTATATCTGTACC	868	False	NA	12	True	NA	NA	NA	96932380	96940041	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_96932479_96935353_96935524_96937855_96938021_96938238_96938384_96938904
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015826	chr11	+	212	1	Intergenic	novelGene_70	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGACTCAGTGACATGACA	NA	False	NA	NA	False	AAAAAG	-4	NA	97081446	97081658	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_97081400_97081700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015842	chr11	+	2294	8	FSM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	140	-3	-52	3	multi-exon	FALSE	canonical	3	2561	junction_3	172.211545276531	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGCTTAAAATTACTTTA	NA	False	NA	17	True	NA	NA	NA	97206681	97220749	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015851	chr11	+	2340	9	NIC	ENSMUSG00000038485.7	novel	7131	10	NA	NA	-217	-4906	combination_of_known_splicesites	FALSE	canonical	3	14	junction_3	8.78564169540279	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTTTTAGTATTTACATT	NA	False	NA	NA	False	NA	NA	NA	97253043	97284462	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_97254250_97263891_97263957_97267262_97267368_97268761_97268893_97269368_97269538_97273725_97273855_97279937_97280074_97280391_97280543_97284214
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015870	chr11	-	2223	2	Genic_Genomic	ENSMUSG00000043439.6	novel	2314	1	NA	NA	-29	5	multi-exon	FALSE	canonical	3	78	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGAGGTCCTTGCCTCCG	4912	False	NA	-8	True	AATAAA	-26	NA	97520557	97518209	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr11_-_97518492_97518616
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015907	chr11	-	1096	5	FSM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	-36	-1	-36	1	multi-exon	FALSE	canonical	3	11120	junction_4	1307.0006455622	958	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGAGTGCTTGAGAA	NA	False	NA	-8	True	AATAAA	-18	NA	97673299	97668351	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015926	chr11	-	2904	14	FSM	ENSMUSG00000017417.15	ENSMUST00000017561.15	2881	14	-23	0	-23	0	multi-exon	FALSE	canonical	3	23	junction_9	6.65462423196374	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGTCGCGCCTGCGTGTA	6837	False	NA	-7	True	AATAAA	-17	NA	97877293	97814063	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_97815434_97816638_97816800_97819259_97819296_97823032_97823166_97824800_97824862_97829355_97829438_97831638_97831735_97844708_97844809_97845576_97845696_97846226_97846350_97846924_97846995_97847248_97847393_97869328_97869508_97877063
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015944	chr11	-	1761	13	FSM	ENSMUSG00000020882.18	ENSMUST00000107562.2	1745	13	-16	0	-16	0	multi-exon	FALSE	canonical	3	23	junction_7	26.3358384884341	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTCTGGTGTCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	97913476	97895750	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97901452_97901473_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015959	chr11	+	708	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	31	-15	at_least_one_novel_splicesite	FALSE	canonical	3	1515	junction_1	5824.77595792319	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	0	True	AATAAA	-18	NA	97917813	97921303	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_97917853_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015961	chr11	+	1135	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	31	-16	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	6412.05157808326	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCTCTTGTTTAGCAGTT	NA	False	NA	-1	True	AATAAA	-17	NA	97917813	97921302	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_97918281_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015973	chr11	+	436	1	Intergenic	novelGene_71	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAATAATGTGAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	97958413	97958849	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_97958400_97958800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000015994	chr11	-	2526	18	NIC	ENSMUSG00000018160.16	novel	8024	17	NA	NA	0	294	combination_of_known_junctions	FALSE	canonical	3	134	junction_1	37.2323667653306	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCTGACCTTATTGCAG	NA	False	NA	-8	True	AATGAA	-15	NA	98084119	98048284	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_98048961_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016012	chr11	+	992	1	Genic_Genomic	ENSMUSG00000003119.15	novel	NA	NA	NA	NA	-285	-21757	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGGAAGTCTCCAAATCTG	NA	False	NA	NA	False	ACTAAA	-21	NA	98093599	98094591	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr11_+_98093600_98094600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016045	chr11	-	748	4	FSM	ENSMUSG00000002580.8	ENSMUST00000002655.8	747	4	-12	11	-12	-11	multi-exon	FALSE	canonical	3	749	junction_2	62.9567752950829	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCAACTGGCGTGT	NA	False	NA	-10	True	AATAAA	-15	NA	98329829	98328544	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_98328972_98329062_98329140_98329472_98329571_98329683
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016062	chr11	-	2069	4	FSM	ENSMUSG00000038150.8	ENSMUST00000052919.8	2184	4	115	0	115	0	multi-exon	FALSE	canonical	3	195	junction_2	8.33999733546454	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGCTTCCTG	1438	False	NA	1	True	AATAAA	-23	NA	98478079	98472081	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_98473674_98473961_98474114_98474767_98474967_98477953
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016068	chr11	+	2181	12	FSM	ENSMUSG00000017221.15	ENSMUST00000017365.15	2148	12	-25	-8	-25	8	multi-exon	FALSE	canonical	3	1019	junction_3	95.9435956889203	2172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACGGTGTCAGTTACTCTG	NA	False	NA	24	True	AATAAA	-22	NA	98573354	98586813	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016078	chr11	+	2397	11	NIC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	1	-1	intron_retention	FALSE	canonical	3	1019	junction_3	100.383066301045	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTGTGCACGGTGTCA	NA	False	NA	15	True	AATAAA	-13	NA	98573391	98586804	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016081	chr11	+	2905	5	FSM	ENSMUSG00000017221.15	ENSMUST00000149489.8	2894	5	1	-12	1	12	multi-exon	FALSE	canonical	3	1019	junction_3	42.2869660770314	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGATAAAACTATAAAGTAAG	NA	False	NA	NA	False	AATAAA	-5	NA	98573391	98583355	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016085	chr11	+	2281	12	NNC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	344.979529875408	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTGTGCACGGTGTCA	NA	False	NA	15	True	AATAAA	-13	NA	98573391	98586804	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584062_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016117	chr11	+	2453	10	FSM	ENSMUSG00000058756.14	ENSMUST00000064187.12	2452	10	0	-1	0	1	multi-exon	FALSE	canonical	3	10	junction_1	13.6055544213057	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGTGCCTCCTCCAGGG	6290	False	NA	30	True	NA	NA	NA	98632636	98659833	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_98632833_98644115_98644465_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354_98654614_98655103_98655232_98658982
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016129	chr11	-	2674	8	FSM	ENSMUSG00000020889.12	ENSMUST00000064941.7	2721	8	45	2	45	-2	multi-exon	FALSE	canonical	3	30	junction_7	7.40104791256493	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGCTTCTGTGATGTG	NA	False	NA	-2	True	NA	NA	NA	98666114	98658759	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_98659246_98659874_98660086_98660528_98660715_98661013_98661658_98662025_98662171_98662262_98662352_98662618_98662961_98665543
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016159	chr11	+	2557	12	NIC	ENSMUSG00000017499.16	novel	4802	13	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_4	177.064586432734	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGGGCTGCATTTG	28	False	NA	8	True	AATATA	-17	NA	98798637	98812719	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802216_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016163	chr11	+	2557	12	NNC	ENSMUSG00000017499.16	novel	4614	12	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	195.743929536559	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGGGCTGCATTTG	35	False	NA	8	True	AATATA	-17	NA	98798644	98812719	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803096_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016200	chr11	+	342	1	Intergenic	novelGene_72	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACTCAAGGTTTCCCAC	7719	False	NA	NA	False	ATTAAA	-14	NA	98898911	98899253	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_98898900_98899300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016212	chr11	-	2924	11	FSM	ENSMUSG00000037935.17	ENSMUST00000103133.4	2919	11	-5	0	-5	0	multi-exon	FALSE	canonical	3	598	junction_2	51.2922021363872	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCAGTGTTTTTATTGC	NA	False	NA	-2	True	AATAAA	-15	NA	99121848	99099872	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99119322_99119375_99121227
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016230	chr11	-	989	6	Fusion	ENSMUSG00000035557.10_ENSMUSG00000020911.15	novel	1576	6	NA	NA	291	-5	multi-exon	FALSE	canonical	0	0	junction_5	5.2	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCAGCGAGACTCCCCTG	NA	False	NA	NA	False	NA	NA	NA	100151564	100031737	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr11_-_100031994_100032105_100032232_100032348_100032511_100032877_100033035_100033251_100033335_100151359
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016246	chr11	+	1220	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	101	1	101	-1	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGATGTCCAGATTGCA	4058	False	NA	20	True	AATAAA	-16	NA	100210811	100212921	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016252	chr11	+	2110	1	NIC	ENSMUSG00000035530.14	novel	1322	4	NA	NA	101	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGATGTCCAGATTGCA	4058	False	NA	20	True	AATAAA	-16	NA	100210811	100212921	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_100210800_100212900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016269	chr11	-	3481	12	NNC	ENSMUSG00000006930.16	novel	3316	12	NA	NA	-1	0	intron_retention	FALSE	canonical	3	58	junction_1	152.849301898665	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGTCTCAGTTGTGTT	2047	False	NA	-2	True	AATAAA	-17	NA	100246914	100238152	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_100239306_100239477_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016271	chr11	-	3104	13	NNC	ENSMUSG00000006930.16	novel	3316	12	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_2	196.783863385413	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGTCTCAGTTGTGTT	2047	False	NA	-2	True	AATAAA	-17	NA	100246914	100238152	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_100239306_100239477_100239686_100240062_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016302	chr11	-	3243	14	FSM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	-38	0	-24	0	multi-exon	FALSE	canonical	3	399	junction_13	65.0294425807792	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	-17	True	AATAAA	-18	NA	100288613	100261444	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100288461
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016312	chr11	-	3216	14	NIC	ENSMUSG00000001552.15	novel	3205	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_13	141.860503195442	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	-17	True	AATAAA	-18	NA	100288589	100261444	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277212_100288461
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016313	chr11	-	3219	14	NNC	ENSMUSG00000001552.15	novel	3205	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	146.674618755197	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	-17	True	AATAAA	-18	NA	100288589	100261444	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274068_100274216_100274481_100276998_100277215_100288461
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016377	chr11	-	4304	28	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	787.355841313494	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATGCTCTTTTATGTTC	NA	False	NA	-14	True	AATAAA	-18	NA	100418737	100367178	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_100368165_100368840_100368918_100369153_100369234_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016389	chr11	-	4289	28	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	740.547261769011	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGATGCTCTTTTATGTT	NA	False	NA	-15	True	AATAAA	-17	NA	100418695	100367179	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395003_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016391	chr11	-	4260	28	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	786.986806240206	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGATGCTCTTTTATGTT	NA	False	NA	-15	True	AATAAA	-17	NA	100418695	100367179	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403705_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016415	chr11	-	4296	29	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	921.233995928886	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	-17	True	AATAAA	-15	NA	100418695	100367181	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374530_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016420	chr11	-	4258	28	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	58	junction_10	777.761698246487	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	-17	True	AATAAA	-15	NA	100418695	100367181	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383438_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016424	chr11	-	4269	28	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	784.363107383924	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	-17	True	AATAAA	-15	NA	100418698	100367181	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374530_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016431	chr11	-	4296	29	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_28	917.541398582236	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	-17	True	AATAAA	-15	NA	100418695	100367181	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418616
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016456	chr11	+	2347	4	FSM	ENSMUSG00000006782.17	ENSMUST00000103120.5	2357	4	11	-1	11	1	multi-exon	FALSE	canonical	3	73	junction_2	8.2192186706253	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGCTATCACTCTTGG	NA	False	NA	20	True	AATAAA	-16	NA	100465740	100472555	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_100465895_100467061_100467732_100469738_100469879_100471172
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016472	chr11	+	2104	4	FSM	ENSMUSG00000017837.13	ENSMUST00000017981.10	2097	4	-4	-3	-4	3	multi-exon	FALSE	canonical	3	328	junction_1	10.0332779621949	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGTCCCCTACCCCTTTT	NA	False	NA	20	True	AATAAA	-27	NA	100513697	100518436	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_100513835_100515017_100515126_100515768_100516011_100516819
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016478	chr11	+	1986	5	NIC	ENSMUSG00000017837.13	novel	988	6	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_3	123.71413621733	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCCGTCCCCTACCCCT	NA	False	NA	17	True	AATAAA	-24	NA	100513720	100518433	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_100513835_100515017_100515126_100515768_100515843_100515934_100516011_100516819
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016485	chr11	-	3063	18	FSM	ENSMUSG00000020918.15	ENSMUST00000006973.12	3043	18	-18	-2	-18	2	multi-exon	FALSE	canonical	3	387	junction_12	55.3609733498447	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATTGTTTTTTGGGGGGGG	6761	False	NA	1	True	AATAAA	-20	NA	100603309	100595569	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599809_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016490	chr11	-	3061	18	FSM	ENSMUSG00000020918.15	ENSMUST00000103118.4	3046	18	-15	0	-15	0	multi-exon	FALSE	canonical	3	120	junction_10	104.829867108865	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATTGTTTTTTGGGGGG	6764	False	NA	-1	True	AATAAA	-18	NA	100603306	100595571	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599812_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016517	chr11	-	2257	9	FSM	ENSMUSG00000017747.14	ENSMUST00000017891.14	2462	9	11	194	-4	-194	multi-exon	FALSE	canonical	3	37	junction_7	5.82961190818051	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGCCTCATTGTTTCGT	NA	False	NA	NA	False	NA	NA	NA	100661772	100657051	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_100657851_100658109_100658196_100658839_100658974_100659043_100659116_100659210_100659404_100659853_100660356_100660481_100660604_100660895_100661177_100661704
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016526	chr11	+	200	1	Intergenic	novelGene_73	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAGAAACAGCTTAATG	NA	False	NA	NA	False	NA	NA	NA	100704049	100704249	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_100704000_100704200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016553	chr11	-	4375	24	FSM	ENSMUSG00000004040.17	ENSMUST00000103114.8	6042	24	-47	1714	28	-2	multi-exon	FALSE	canonical	3	67	junction_2	102.13864331127	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCAGTGGGGGCTGGCT	NA	False	NA	-6	True	AATAAA	-17	NA	100830277	100777637	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_100779587_100780303_100780367_100780711_100780755_100783899_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016571	chr11	+	3990	21	NIC	ENSMUSG00000019302.17	novel	4008	22	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	127	junction_18	25.9536124653197	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTCTCTGAGTGTG	NA	False	NA	17	True	AATAAA	-22	NA	100900277	100954545	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100945851_100945970_100946259_100946432_100953137
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016595	chr11	+	2098	10	FSM	ENSMUSG00000001755.13	ENSMUST00000001806.10	2138	10	41	-1	-12	1	multi-exon	FALSE	canonical	3	106	junction_1	26.2908705931015	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTGGTTTTCTGTTT	3552	False	NA	26	True	ATTAAA	-17	NA	100973431	100977446	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_100973517_100973824_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016646	chr11	-	3018	13	FSM	ENSMUSG00000035172.16	ENSMUST00000164474.8	3010	13	-5	-3	-5	0	multi-exon	FALSE	canonical	3	27	junction_4	14.3843568581366	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCCTGTGGGAGTGTTG	720	False	NA	3	True	AAGAAA	-22	NA	101062148	101053504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_101053891_101054331_101054524_101054838_101055298_101055484_101055618_101055885_101056014_101056309_101056518_101057179_101057487_101058275_101058397_101058500_101058659_101058743_101058936_101059040_101059121_101059467_101059524_101061550
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016655	chr11	-	4170	21	FSM	ENSMUSG00000006920.15	ENSMUST00000107285.8	4193	21	24	-1	0	0	multi-exon	FALSE	canonical	3	124	junction_20	14.6399282785128	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCAAGTTGTGTCCTC	2642	False	NA	-7	True	AATAAA	-15	NA	101117252	101081940	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_101083826_101084044_101084130_101084551_101084633_101085293_101085376_101085711_101085808_101086344_101086524_101090083_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479_101109547_101117221
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016666	chr11	+	597	6	FSM	ENSMUSG00000078656.12	ENSMUST00000007533.15	615	6	19	-1	-3	1	multi-exon	FALSE	canonical	3	39	junction_5	475.771541813926	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCTGTGACTCTTTAT	NA	False	NA	2	True	AGTAAA	-18	NA	101144551	101148876	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101148726
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016676	chr11	-	745	2	FSM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	146	-5	-25	5	multi-exon	FALSE	canonical	3	1870	junction_1	0	430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGTGTGTGGGGGCAGAG	5648	False	NA	0	True	AATAAA	-25	NA	101169794	101168788	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_101169279_101169539
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016685	chr11	-	2062	12	FSM	ENSMUSG00000035086.14	ENSMUST00000130916.8	4365	12	-3	2306	-3	4	multi-exon	FALSE	canonical	3	365	junction_8	49.9747043451001	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTACGCCTGTATGTTTT	NA	False	NA	2	True	AATAAA	-29	NA	101193115	101179083	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186451_101187083_101187143_101189834_101189903_101192553_101192683_101192957
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016705	chr11	+	2673	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	-7	-2	-7	2	multi-exon	FALSE	canonical	3	1173	junction_6	119.560068584791	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGTGCTGTACTCTGGT	NA	False	NA	36	True	ATTAAA	-37	NA	101207031	101214365	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016715	chr11	+	2649	11	NNC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	417.198945348619	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGGTGCTGTACTCTG	NA	False	NA	34	True	ATTAAA	-35	NA	101207050	101214363	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211439_101211552_101211640_101212617
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016776	chr11	-	2805	6	FSM	ENSMUSG00000034993.8	ENSMUST00000040430.8	2766	6	-27	-12	-27	12	multi-exon	TRUE	canonical	3	320	junction_5	13.7462722219517	1856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTATCTGAGAGTTGCT	NA	False	NA	1	True	AATAAA	-27	NA	101357083	101349558	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353943_101356533
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016784	chr11	-	2799	6	NNC	ENSMUSG00000034993.8	novel	2766	6	NA	NA	-23	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	137.300254916005	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGATGTTGTATCTGAGAG	NA	False	NA	-4	True	AATAAA	-22	NA	101357079	101349563	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353939_101356526
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016817	chr11	+	4441	24	FSM	ENSMUSG00000017119.21	ENSMUST00000103098.9	4654	24	213	0	0	0	multi-exon	TRUE	canonical	3	112	junction_17	38.3552196362625	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	987	False	NA	21	True	AATAAA	-24	NA	101443692	101472777	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016825	chr11	+	214	1	Intergenic	novelGene_74	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGAGTGGGCTGAAGAG	9725	False	NA	NA	False	AAAAAG	-5	NA	101458170	101458384	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_101458200_101458400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016827	chr11	+	2304	9	FSM	ENSMUSG00000034947.14	ENSMUST00000039581.14	2304	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.99843725578305	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAAGGGGCATTCCTGGA	3688	False	NA	NA	False	AATAAA	-17	NA	101473067	101482614	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_101473152_101473450_101473531_101474383_101474611_101475271_101475336_101477064_101477219_101479678_101479820_101479923_101479968_101480760_101480815_101481158
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016833	chr11	+	457	1	FSM	ENSMUSG00000119776.1	ENSMUST00000240535.1	191	1	0	-266	0	266	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGTAGCACTGGAGCTAA	NA	False	NA	NA	False	AATAAA	-30	NA	101518191	101518648	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_101518200_101518600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016836	chr11	+	1139	7	FSM	ENSMUSG00000010362.10	ENSMUST00000010506.10	1124	7	-15	0	-15	0	multi-exon	FALSE	canonical	3	866	junction_2	120.614284210269	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTGTGGTTTGGGTCCC	NA	False	NA	29	True	AATAAA	-28	NA	101518752	101526926	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016841	chr11	+	1110	7	NNC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	-5	-13	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	417.624798380343	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTCTTGTAAATAGTGTG	NA	False	NA	16	True	AATAAA	-15	NA	101518762	101526913	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_101518891_101519098_101519279_101521063_101521187_101521651_101521806_101524627_101524727_101525613_101525700_101526573
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016855	chr11	+	4258	23	FSM	ENSMUSG00000034931.16	ENSMUST00000039152.14	4325	23	67	0	-12	0	multi-exon	FALSE	canonical	3	151	junction_7	24.6553097226675	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTTTATTATGACTTT	NA	False	NA	26	True	NA	NA	NA	101623842	101658184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_101624015_101624981_101625068_101626203_101626277_101626634_101626721_101628482_101628593_101628955_101629388_101630529_101630675_101631488_101631693_101632326_101632415_101633901_101634000_101635931_101636080_101640710_101640893_101641703_101641899_101642836_101643023_101643110_101643322_101643973_101644156_101645557_101645699_101648418_101648575_101653034_101653173_101654722_101654852_101654970_101655168_101655603_101655784_101657465
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016883	chr11	-	2258	5	FSM	ENSMUSG00000020922.12	ENSMUST00000021297.6	2256	5	-2	0	-2	0	multi-exon	FALSE	canonical	3	919	junction_1	21.856063231973	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6354	False	NA	-1	True	AATAAA	-23	NA	102076124	102053322	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016898	chr11	-	3787	27	NIC	ENSMUSG00000008855.18	novel	3872	28	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	1	78	junction_13	40.333300731889	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	NA	False	NA	-3	True	ATTAAA	-22	NA	102120990	102086572	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102109241_102109314_102115559_102115782_102120830
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016908	chr11	-	3791	27	NIC	ENSMUSG00000008855.18	novel	3788	27	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	61.7194454027935	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	NA	False	NA	-3	True	ATTAAA	-22	NA	102120987	102086572	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_102086695_102086773_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102109241_102109317_102115559_102115782_102120830
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016909	chr11	-	3762	27	NNC	ENSMUSG00000008855.18	novel	3788	27	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	1	29	junction_23	58.2045973092246	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	NA	False	NA	-3	True	ATTAAA	-22	NA	102120965	102086572	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097598_102097732_102097993_102109241_102109317_102115559_102115782_102120830
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016916	chr11	-	3896	28	FSM	ENSMUSG00000008855.18	ENSMUST00000124077.8	3872	28	-22	-2	5	0	multi-exon	FALSE	canonical	1	1	junction_25	66.6396241448948	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	NA	False	NA	-3	True	ATTAAA	-22	NA	102120987	102086572	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102104750_102104863_102109241_102109314_102115559_102115782_102120830
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016921	chr11	-	3769	27	FSM	ENSMUSG00000008855.18	ENSMUST00000107150.8	3759	27	-6	-4	0	0	multi-exon	FALSE	canonical	0	0	junction_1	56.5686601715956	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	NA	False	NA	-3	True	ATTAAA	-22	NA	102120968	102086572	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_102086695_102086773_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102109241_102109314_102115559_102115782_102120830
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016959	chr11	+	2588	10	FSM	ENSMUSG00000034773.17	ENSMUST00000100392.5	2547	10	-40	-1	-40	1	multi-exon	FALSE	canonical	3	289	junction_3	21.1502561056204	500	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCGTCCCACACCTCCTT	NA	False	NA	16	True	AATAAA	-23	NA	102139667	102156014	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016987	chr11	+	1909	4	FSM	ENSMUSG00000034757.16	ENSMUST00000036376.13	1939	4	30	0	10	0	multi-exon	FALSE	canonical	3	77	junction_1	22.5437845585479	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102175786	102180063	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_102175915_102176489_102176545_102178133_102178698_102178901
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000016994	chr11	+	2259	3	FSM	ENSMUSG00000034757.16	ENSMUST00000156326.2	2249	3	-10	0	-10	0	multi-exon	FALSE	canonical	3	94	junction_1	18.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102176011	102180063	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_102176545_102178133_102178698_102178901
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017001	chr11	-	2179	1	ISM	ENSMUSG00000059995.13	ENSMUST00000145484.2	3102	7	1964	2	1964	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCGGCCTGCCCACTCT	2971	False	NA	-8	True	AATAAA	-17	NA	102182306	102180127	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_-_102180100_102182300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017054	chr11	-	3050	21	NNC	ENSMUSG00000020923.18	novel	4692	21	NA	NA	-84	2	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_20	188.523970624427	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCGGCTGCCGTCTCTGTT	8470	False	NA	-7	True	NA	NA	NA	102208197	102196816	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102208159
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017134	chr11	+	2152	13	NNC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	179.221677601294	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATCTGATTTGTTGCGC	4323	False	NA	17	True	AATAAA	-19	NA	102321332	102327635	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327079_102327160
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017158	chr11	-	2228	3	FSM	ENSMUSG00000034520.15	ENSMUST00000068933.12	1903	3	-218	-107	-187	107	multi-exon	FALSE	canonical	3	506	junction_2	138	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTTAAGATCTATCTATAG	NA	False	NA	-1	True	NA	NA	NA	102710223	102690297	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_102692022_102693666_102693743_102709795
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017180	chr11	-	1879	3	FSM	ENSMUSG00000034520.15	ENSMUST00000092567.11	1890	3	8	3	8	-3	multi-exon	FALSE	canonical	3	30	junction_2	376	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGTCTGTTAAAGGGTAA	NA	False	NA	-11	True	ATTAAA	-19	NA	102710518	102690407	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_102692022_102693666_102693743_102710329
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017194	chr11	-	3511	28	FSM	ENSMUSG00000020929.15	ENSMUST00000021306.14	3324	28	-184	-3	-166	3	multi-exon	TRUE	canonical	3	142	junction_26	264.162864923118	875	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTTTGCTGCTTTCGTT	8282	False	NA	-2	True	TATAAA	-25	NA	102771977	102729295	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017222	chr11	-	2960	16	FSM	ENSMUSG00000051378.11	ENSMUST00000021311.10	3326	16	0	366	0	-366	multi-exon	FALSE	canonical	3	261	junction_10	31.928809700471	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGGGACTCTTGGGCTCT	3724	False	NA	-2	True	ATTAAA	-43	NA	102815950	102796720	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_102797103_102797321_102797408_102797821_102797903_102798938_102799465_102799712_102799919_102803179_102803296_102803745_102803915_102804275_102804377_102804509_102804585_102805075_102805253_102805364_102805563_102805640_102805752_102805975_102806081_102806368_102806527_102807014_102807342_102815808
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017229	chr11	-	1772	5	FSM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	-21	-7	-21	7	multi-exon	FALSE	canonical	3	1121	junction_2	32.0965340808007	328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCACTTGGCCTTTGTTCA	8172	False	NA	2	True	NA	NA	NA	102908015	102884865	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017251	chr11	+	2246	11	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	-6	0	intron_retention	FALSE	canonical	3	42	junction_2	36.0373417443629	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102992528	103003026	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_102992615_102993507_102993972_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017279	chr11	+	2147	1	FSM	ENSMUSG00000048878.7	ENSMUST00000053063.7	3495	1	0	1348	0	-1348	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTCAGTGTGATTTCTA	NA	False	NA	10	True	AATAAA	-21	NA	103007056	103009203	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_103007100_103009200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017306	chr11	-	3080	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	186	0	-14	0	multi-exon	TRUE	canonical	3	264	junction_1	54.6867442804927	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGGCATTCTTTGTCT	NA	False	NA	2	True	AATAAA	-31	NA	103588538	103567674	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017312	chr11	-	2996	5	FSM	ENSMUSG00000020946.14	ENSMUST00000145265.2	917	5	2	-2081	-2	-3	multi-exon	FALSE	canonical	3	13	junction_4	142.958910180513	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCACTTGGCATTCTTTG	NA	False	NA	-1	True	AATAAA	-28	NA	103588522	103567677	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103588455
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017313	chr11	-	2936	5	FSM	ENSMUSG00000020946.14	ENSMUST00000107013.3	1044	5	-18	-1874	-14	-3	multi-exon	FALSE	canonical	3	79	junction_1	134.545531326759	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCACTTGGCATTCTTTG	NA	False	NA	-1	True	AATAAA	-28	NA	103588538	103567677	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_103570224_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017324	chr11	-	3734	21	FSM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	32	0	0	0	multi-exon	FALSE	canonical	3	278	junction_14	21.9246436687122	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTATAGACCAGTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	103844850	103712607	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017331	chr11	-	2971	22	NIC	ENSMUSG00000034187.19	novel	3766	21	NA	NA	0	332	combination_of_known_junctions	FALSE	canonical	3	14	junction_21	89.2116899491472	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATAATTTACAAGCCT	NA	False	NA	-48	True	NA	NA	NA	103844850	103713418	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103821901_103821950_103844795
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017357	chr11	-	1465	11	ISM	ENSMUSG00000020687.14	ENSMUST00000093923.9	5425	19	-137	18783	0	-1274	5prime_fragment	FALSE	canonical	3	170	junction_6	29.5323551380516	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAACTAATAAAGGAGGA	2066	False	NA	NA	False	AATGAA	-36	NA	104441446	104412353	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_-_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441188
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017406	chr11	+	5717	7	FSM	ENSMUSG00000049354.9	ENSMUST00000058438.9	5750	7	33	0	5	0	multi-exon	FALSE	canonical	3	184	junction_6	15.5527775297176	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGATGAATTCA	4778	False	NA	15	True	AATAAA	-24	NA	105927730	105950150	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_105928088_105937516_105937676_105938462_105938575_105938968_105939088_105942582_105942793_105944556_105944675_105945508
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017450	chr11	+	3892	18	NNC	ENSMUSG00000020705.7	novel	445	2	NA	NA	-482	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	148.657335709368	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTCTTTTATCTTTTTAT	NA	False	NA	27	True	ATTAAA	-14	NA	106107269	106139964	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_106107379_106114906_106115145_106115609_106115765_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017453	chr11	+	4007	18	NNC	ENSMUSG00000020705.7	novel	4011	18	NA	NA	9	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	118.85704244929	157	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTTATCTTTTTATTC	NA	False	NA	29	True	ATTAAA	-16	NA	106107760	106139966	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_106107983_106114906_106115145_106115609_106115765_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017464	chr11	-	2961	20	NIC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	-22	1	intron_retention	FALSE	canonical	3	632	junction_6	78.119909252422	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTCTGATAGTTTAA	NA	False	NA	-13	True	AATAAA	-14	NA	106146652	106139966	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017485	chr11	+	1312	11	NNC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	775.653331070008	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	15	True	AATAAA	-19	NA	106146979	106153946	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152735_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017494	chr11	-	2843	13	FSM	ENSMUSG00000078619.11	ENSMUST00000021052.16	2747	13	-90	-6	-90	6	multi-exon	FALSE	canonical	3	510	junction_5	34.2842488939487	1759	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTGGTCATTGAACAGTG	NA	False	NA	-1	True	AATAAA	-26	NA	106163888	106153998	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_106154946_106155020_106155123_106155258_106155382_106155497_106155634_106155765_106155864_106156008_106156171_106156485_106156588_106156713_106156810_106157362_106157519_106157716_106157840_106157963_106158007_106158159_106158345_106163318
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017529	chr11	-	4834	12	FSM	ENSMUSG00000040548.17	ENSMUST00000042780.14	4934	12	-89	189	-89	57	multi-exon	FALSE	canonical	3	112	junction_11	20.6061051692923	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGTACTGCTTTAATT	3242	False	NA	-1	True	ATTAAA	-27	NA	106503845	106393161	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410707_106410841_106420087_106420188_106424696_106424844_106434997_106435246_106437489_106437830_106439539_106439741_106457790_106459454_106503683
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017563	chr11	-	3201	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9028	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	509.4539343498	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTGCATTCAAGTGTCA	396	False	NA	-8	True	AATAAA	-20	NA	106615248	106545041	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573775_106574414_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615196
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017597	chr11	-	3294	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9034	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	480.027758456622	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	390	False	NA	-9	True	AATAAA	-19	NA	106615254	106545042	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573775_106574414_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017613	chr11	-	3182	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9028	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	539.623205655236	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	396	False	NA	-9	True	AATAAA	-19	NA	106615248	106545042	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573775_106574414_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106605990_106615196
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017615	chr11	-	3146	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9028	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	584.079359526471	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	396	False	NA	-9	True	AATAAA	-19	NA	106615248	106545042	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_106545989_106570374_106570438_106573705_106573775_106574414_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615196
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017620	chr11	-	3292	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9063	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	490.973835012281	40	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	361	False	NA	-9	True	AATAAA	-19	NA	106615283	106545042	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573775_106574414_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615196
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017708	chr11	-	2332	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1169.78376444348	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	-7	True	AATAAA	-19	NA	106679320	106672371	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676218_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017710	chr11	-	2505	14	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-25	2	combination_of_known_junctions	FALSE	canonical	3	89	junction_13	1103.10076146326	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9240	False	NA	-7	True	AATAAA	-19	NA	106679734	106672371	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679524
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017713	chr11	-	2334	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1169.03004666262	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	-7	True	AATAAA	-19	NA	106679320	106672371	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675235_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017716	chr11	-	3595	12	FSM	ENSMUSG00000020719.15	ENSMUST00000133426.8	3593	12	0	-2	0	2	multi-exon	FALSE	canonical	3	3830	junction_7	165.368159266449	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	-7	True	AATAAA	-19	NA	106679320	106672371	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017718	chr11	-	2469	14	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-4	2	combination_of_known_junctions	FALSE	canonical	3	497	junction_13	995.534526816042	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	8959	False	NA	-7	True	AATAAA	-19	NA	106680015	106672371	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679841
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017726	chr11	-	3807	11	NIC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	2	intron_retention	FALSE	canonical	3	3830	junction_6	142.502245596341	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	-7	True	AATAAA	-19	NA	106679320	106672371	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017736	chr11	+	220	1	Intergenic	novelGene_75	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGGGATTCCATTGTAA	8127	False	NA	NA	False	TTTAAA	-16	NA	106696798	106697018	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_106696800_106697000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017738	chr11	+	201	1	Intergenic	novelGene_76	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGACCCCGTCTTAAAAACA	9527	False	NA	NA	False	NA	NA	NA	106698198	106698399	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_106698200_106698400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017740	chr11	-	2014	11	FSM	ENSMUSG00000018362.15	ENSMUST00000018506.13	2054	11	41	-1	41	1	multi-exon	FALSE	canonical	3	2002	junction_5	417.039386629129	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTTTTCTTAATTGAG	9707	False	NA	NA	False	AATAAA	-28	NA	106890326	106879453	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017776	chr11	-	2441	8	NIC	ENSMUSG00000040430.19	novel	6329	10	NA	NA	-21	-3782	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	26.7177232318526	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTCAGGTGTCACATGC	NA	False	NA	NA	False	NA	NA	NA	107361546	107102499	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_107103485_107117056_107117121_107125172_107125329_107142847_107142944_107187024_107187097_107212412_107212502_107228237_107228387_107360716
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017779	chr11	-	2141	9	NIC	ENSMUSG00000040430.19	novel	6329	10	NA	NA	-21	-4201	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	20.8862245271854	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGAAAGGAAACAAAACAGGA	NA	False	NA	NA	False	NA	NA	NA	107361546	107102918	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_107103485_107107503_107107623_107117056_107117121_107125172_107125329_107142847_107142944_107187024_107187097_107212412_107212502_107228237_107228387_107360716
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017794	chr11	+	208	1	Intergenic	novelGene_77	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCAGCCAATGTTCTTAAC	NA	False	NA	NA	False	NA	NA	NA	107377937	107378145	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_107377900_107378100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017804	chr11	+	4408	11	NIC	ENSMUSG00000000142.16	novel	2551	9	NA	NA	33	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_4	5.20096144957834	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCTCATCTTTGGAT	NA	False	NA	7	True	ATTAAA	-19	NA	108811658	108841609	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_108812020_108813977_108814929_108822264_108822406_108830137_108830241_108832728_108832870_108833016_108833523_108833760_108833956_108834481_108834713_108835335_108835432_108836705_108836874_108840094
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017829	chr11	-	2165	6	NNC	ENSMUSG00000041920.15	novel	4219	6	NA	NA	-1386	19	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	8.20731381147328	70	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCACAATCTTGAACCATT	1184	False	NA	NA	False	NA	NA	NA	109365810	109343532	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109365661
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017840	chr11	-	2051	13	NNC	ENSMUSG00000041895.16	novel	2050	13	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	32.2541986930901	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAGTTGTTTACATTT	NA	False	NA	-6	True	AATAAA	-15	NA	109502255	109464156	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_109464794_109467882_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473193_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017844	chr11	-	3360	12	NNC	ENSMUSG00000041895.16	novel	3338	12	NA	NA	3	21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	33.682523609347	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCACAAACCAAAACTAGTT	NA	False	NA	NA	False	NA	NA	NA	109502255	109465936	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473193_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017848	chr11	+	3358	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	4	-3	4	3	multi-exon	TRUE	canonical	3	1417	junction_9	119.858458191318	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATCAGTTTTTCTTCCTT	NA	False	NA	23	True	AATAAA	-28	NA	109541750	109560485	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017856	chr11	+	2068	12	FSM	ENSMUSG00000020623.12	ENSMUST00000020949.12	2068	12	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_7	8.31308835611224	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATAGTATTAGTG	NA	False	NA	14	True	AGTAAA	-24	NA	110289947	110404467	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381702_110383338_110383459_110383721_110383839_110385120_110385173_110387164_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017860	chr11	-	1853	3	NNC	ENSMUSG00000087259.8	novel	1861	3	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	1	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTCTGTAAATGTTGTCT	NA	False	NA	NA	False	TATAAA	-15	NA	113092666	112934728	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_112935987_112958167_112958213_113092116
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017888	chr11	-	2719	10	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-15	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	167.525785743237	29	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTCCGTGCGAT	7731	False	NA	-3	True	AATAAA	-18	NA	113456620	113135679	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113456501
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017912	chr11	+	2203	2	FSM	ENSMUSG00000047904.7	ENSMUST00000146390.3	2143	2	-60	0	-60	0	multi-exon	FALSE	canonical	2	8	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAAGTAAGGTGGTTTTG	NA	False	NA	NA	False	NA	NA	NA	113510107	113516854	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_113510449_113514992
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017946	chr11	+	3068	5	FSM	ENSMUSG00000041623.18	ENSMUST00000106621.4	2062	5	-1006	0	-971	0	multi-exon	TRUE	canonical	3	249	junction_1	30.335622624235	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113574266	113585473	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_113575538_113578599_113580048_113582554_113582660_113583220_113583329_113585337
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017953	chr11	+	2657	5	NIC	ENSMUSG00000041623.18	novel	2196	5	NA	NA	0	0	intron_retention	TRUE	canonical	3	43	junction_1	113.778293184597	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575237	113585473	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_113576098_113578599_113580048_113582554_113582660_113583220_113583329_113585337
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000017959	chr11	+	2174	5	FSM	ENSMUSG00000041623.18	ENSMUST00000042227.15	2196	5	22	0	-6	0	multi-exon	FALSE	canonical	3	41	junction_1	114.630929508575	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575259	113585473	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_113575637_113578599_113580048_113582554_113582660_113583220_113583329_113585337
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018020	chr11	+	3489	14	FSM	ENSMUSG00000034714.10	ENSMUST00000045779.6	3486	14	5	-8	5	8	multi-exon	TRUE	canonical	3	173	junction_11	15.0937896237857	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAGTCACTTAACTTGGT	NA	False	NA	19	True	AATAAA	-22	NA	114566261	114611811	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_114566499_114577219_114577393_114581064_114581177_114587414_114587636_114592606_114592703_114593061_114593135_114598161_114598232_114598504_114598561_114599242_114599336_114599594_114599688_114600868_114601012_114601636_114601823_114602585_114602665_114609954
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018062	chr11	-	1889	12	FSM	ENSMUSG00000018861.9	ENSMUST00000021078.3	1948	12	59	0	59	0	multi-exon	FALSE	canonical	3	83	junction_7	15.1766458254911	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGGCTGATAGCTACCA	NA	False	NA	0	True	AATAAA	-17	NA	115167817	115158849	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162826_115163012_115163109_115166904_115167009_115167634
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018105	chr11	+	2261	3	FSM	ENSMUSG00000057219.12	ENSMUST00000035240.7	2260	3	0	-1	0	1	multi-exon	FALSE	canonical	3	16	junction_2	2.5	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTGTGCTAGTCTCCT	NA	False	NA	NA	False	ATTAAA	-23	NA	115366492	115381294	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_115366854_115366947_115367092_115379538
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018188	chr11	-	1305	6	NNC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	134.525239267581	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503746	115498743	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503628
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018189	chr11	-	1694	5	FSM	ENSMUSG00000020743.16	ENSMUST00000106507.9	1656	5	-38	0	-38	0	multi-exon	FALSE	canonical	3	302	junction_2	39.92101576864	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503367	115498743	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018194	chr11	-	1454	5	NIC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	2	0	intron_retention	FALSE	canonical	3	324	junction_4	32.8129166640212	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503751	115498743	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_115499440_115499886_115500262_115500364_115500475_115502728_115502861_115503610
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018216	chr11	-	2724	6	FSM	ENSMUSG00000059923.14	ENSMUST00000021090.14	2709	6	-15	0	-15	0	multi-exon	FALSE	canonical	3	859	junction_5	53.4714877294432	322	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTCTTCATTTCTCC	4455	False	NA	-1	True	AATAAA	-19	NA	115599438	115534870	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018225	chr11	-	374	1	FSM	ENSMUSG00000083394.3	ENSMUST00000118352.3	483	1	-24	133	-24	-133	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGCCAAAGAGAAGGGCA	NA	False	NA	NA	False	AAGAAA	-3	NA	115615658	115615284	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_115615300_115615700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018243	chr11	+	1984	11	FSM	ENSMUSG00000020781.15	ENSMUST00000021134.10	1979	11	-9	4	-9	1	multi-exon	FALSE	canonical	3	156	junction_1	26.8730348118704	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGGTTCAATACTTACA	5923	False	NA	NA	False	ATTAAA	-17	NA	115705540	115713916	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_115705646_115705740_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018265	chr11	+	2042	10	NIC	ENSMUSG00000020781.15	novel	1979	11	NA	NA	5	0	intron_retention	FALSE	canonical	3	156	junction_1	27.0203398467173	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTGGTTCAATACTTAC	5959	False	NA	NA	False	ATTAAA	-16	NA	115705576	115713915	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_115705646_115705740_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018281	chr11	+	3544	26	NNC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	-14	-22	at_least_one_novel_splicesite	TRUE	canonical	3	107	junction_23	160.438568929045	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTGTTTCGTCTTCACT	6786	False	NA	16	True	AATAAA	-1	NA	115714860	115746582	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745885_115745932_115746017_115746080_115746291
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018285	chr11	+	3536	26	NNC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	-12	-22	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_25	162.280576779848	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTGTTTCGTCTTCACT	6788	False	NA	16	True	AATAAA	-1	NA	115714862	115746582	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746294
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018317	chr11	-	3619	20	NNC	ENSMUSG00000020752.12	novel	3971	19	NA	NA	-10	0	at_least_one_novel_splicesite	TRUE	canonical	3	14	junction_19	18.5488797998223	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTCTTGGGTGTTTTAC	NA	False	NA	-2	True	AATAAA	-33	NA	115824313	115783420	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_115783985_115784085_115784156_115784320_115784546_115784772_115784864_115785032_115785545_115785821_115785957_115786240_115786335_115786593_115786668_115786749_115786809_115786924_115786962_115787601_115787702_115787866_115788086_115807804_115807885_115813991_115814155_115816232_115816345_115818154_115818261_115818793_115819313_115821502_115821625_115823614_115823745_115824106
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018318	chr11	-	3987	19	FSM	ENSMUSG00000020752.12	ENSMUST00000021097.10	3971	19	-16	0	-16	0	multi-exon	FALSE	canonical	3	54	junction_14	12.1025708930881	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTCTTGGGTGTTTTAC	NA	False	NA	-2	True	AATAAA	-33	NA	115824319	115783420	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_115783985_115784085_115784156_115784320_115784546_115784772_115784864_115785032_115785545_115785821_115785957_115786240_115786335_115786593_115786668_115786749_115786809_115786924_115786962_115787601_115787702_115787866_115788086_115807804_115807885_115813991_115814155_115816232_115816345_115818154_115818261_115818793_115819313_115821502_115821625_115823614
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018370	chr11	+	204	1	Intergenic	novelGene_78	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAACCAAAGAAGTAGTAAT	4336	False	NA	NA	False	NA	NA	NA	115916661	115916865	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_+_115916700_115916900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018394	chr11	-	2205	6	FSM	ENSMUSG00000020773.12	ENSMUST00000021120.6	2204	6	-1	0	-1	0	multi-exon	FALSE	canonical	3	54	junction_2	42.4951761968344	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	116001073	115996577	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_115997468_115997757_115997833_115998249_115998449_115998603_115998835_115999091_115999188_116000359
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018408	chr11	-	1436	9	FSM	ENSMUSG00000020775.14	ENSMUST00000106439.2	1411	9	-23	-2	-23	2	multi-exon	FALSE	canonical	3	763	junction_8	33.509093914936	602	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTTCACTTTCGGGCA	384	False	NA	0	True	AATAAA	-22	NA	116029717	116022640	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018431	chr11	+	901	4	FSM	ENSMUSG00000020778.13	ENSMUST00000021130.7	902	4	3	-2	3	2	multi-exon	FALSE	canonical	3	95	junction_3	16.0277537068951	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGCTGATGCGGAG	9070	False	NA	9	True	AATAAA	-16	NA	116089683	116106146	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_116089810_116095670_116095806_116096436_116096595_116105664
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018437	chr11	-	2448	16	FSM	ENSMUSG00000020780.16	ENSMUST00000021133.16	2526	16	80	-2	-2	2	multi-exon	FALSE	canonical	3	572	junction_9	48.1105209099031	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTGGTTTTTGCATG	9897	False	NA	0	True	ATTAAA	-19	NA	116164963	116135989	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162738_116162806_116164751
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018441	chr11	-	2435	16	NNC	ENSMUSG00000020780.16	novel	2526	16	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	165.103388483971	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCTGGTTTTTGCA	9912	False	NA	-2	True	ATTAAA	-17	NA	116164948	116135991	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162734_116162806_116164751
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018549	chr11	-	3534	2	NNC	ENSMUSG00000034120.19	novel	1899	3	NA	NA	0	525	intron_retention	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCTTTATAATTTTAAGC	6003	False	NA	NA	False	AAAAAG	-4	NA	116743920	116740201	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_116742285_116742469
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018551	chr11	-	1902	3	FSM	ENSMUSG00000034120.19	ENSMUST00000092404.13	1899	3	0	-3	0	3	multi-exon	FALSE	canonical	3	1775	junction_2	41.5	1349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGGTCTTTTGTTTCCC	6003	False	NA	-2	True	ATTAAA	-34	NA	116743920	116740723	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_116741788_116742846_116743158_116743393
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018560	chr11	-	1397	4	NIC	ENSMUSG00000034120.19	novel	1899	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	235	junction_1	746.295890083521	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCCTGGTCTTTTGTTT	6003	False	NA	-5	True	ATTAAA	-31	NA	116743920	116740726	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_116741180_116741681_116741788_116742846_116743158_116743393
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018564	chr11	-	2958	2	NIC	ENSMUSG00000034120.19	novel	1899	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	1775	junction_1	0	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCCTGGTCTTTTGTTT	6003	False	NA	-5	True	ATTAAA	-31	NA	116743920	116740726	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_116743158_116743393
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018568	chr11	-	2453	3	NIC	ENSMUSG00000034120.19	novel	1336	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	235	junction_1	770	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGTGTCCTGGTCTTTTG	6003	False	NA	-8	True	ATTAAA	-28	NA	116743920	116740729	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_116741180_116741681_116743158_116743393
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018573	chr11	-	2770	3	NNC	ENSMUSG00000034120.19	novel	1899	3	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	887.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGTGTCCTGGTCTTTTG	6003	False	NA	-8	True	ATTAAA	-28	NA	116743920	116740729	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_116742285_116742469_116743158_116743393
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018594	chr11	+	2339	14	NIC	ENSMUSG00000020818.17	novel	2952	14	NA	NA	-2	0	combination_of_known_junctions	TRUE	canonical	3	62	junction_1	8.80424857096892	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGAGTATTTACTGGGA	NA	False	NA	5	True	AATAAA	-16	NA	116744585	116765538	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_116744730_116744825_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018599	chr11	+	2435	13	FSM	ENSMUSG00000020818.17	ENSMUST00000021173.14	3298	13	-60	923	-2	0	multi-exon	FALSE	canonical	3	74	junction_12	6.07076326887045	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGAGTATTTACTGGGA	NA	False	NA	5	True	AATAAA	-16	NA	116744585	116765538	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018615	chr11	+	4747	16	FSM	ENSMUSG00000020823.17	ENSMUST00000090433.6	4654	16	-93	0	-23	0	multi-exon	TRUE	canonical	3	319	junction_5	24.9420662068455	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGTCCTTTTCTTCTTGG	NA	False	NA	8	True	AATAAA	-18	NA	117005970	117050094	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018619	chr11	+	2888	17	FSM	ENSMUSG00000020823.17	ENSMUST00000021177.15	2866	17	-22	0	-18	0	multi-exon	FALSE	canonical	3	28	junction_16	82.8488599423673	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGAGTGTCCTTTTCTTCT	NA	False	NA	5	True	AATAAA	-15	NA	117005975	117050091	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626_117047729_117049579
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018648	chr11	+	2918	10	NIC	ENSMUSG00000059248.14	novel	647	4	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	178.114819397177	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	91	True	AATAAA	-16	NA	117198974	117253139	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_117199098_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018649	chr11	+	2922	10	NNC	ENSMUSG00000059248.14	novel	647	4	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	252.450117307153	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	91	True	AATAAA	-16	NA	117198974	117253139	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_117199098_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247261_117247438_117247536_117250244_117250297_117251248
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018663	chr11	+	2862	10	NNC	ENSMUSG00000059248.14	novel	2924	10	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	202.139360312766	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	91	True	AATAAA	-16	NA	117222527	117253139	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_117222595_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018667	chr11	+	2947	10	FSM	ENSMUSG00000059248.14	ENSMUST00000100193.8	2924	10	-18	-5	-18	0	multi-exon	FALSE	canonical	3	18	junction_1	196.831569283656	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	91	True	AATAAA	-16	NA	117222527	117253139	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_117222680_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018669	chr11	+	2951	10	NNC	ENSMUSG00000059248.14	novel	2924	10	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	264.240257304308	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	91	True	AATAAA	-16	NA	117222527	117253139	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_117222680_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247261_117247438_117247536_117250244_117250297_117251248
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018676	chr11	+	2930	10	NNC	ENSMUSG00000059248.14	novel	2932	10	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	216.950127966525	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTCTGGAGTTCTCTT	NA	False	NA	92	True	AATAAA	-17	NA	117223166	117253140	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247261_117247438_117247536_117250244_117250297_117251248
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018695	chr11	-	2942	20	FSM	ENSMUSG00000025572.19	ENSMUST00000026659.10	2865	20	-73	-4	-54	4	multi-exon	TRUE	canonical	3	224	junction_9	41.6618095045227	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCTTCAGGATGAGCT	NA	False	NA	0	True	ATTAAA	-19	NA	117671538	117656809	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018701	chr11	-	2921	20	NIC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	-18	3	combination_of_known_junctions	FALSE	canonical	3	55	junction_7	66.6673222497775	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGCTTCAGGATGAGC	NA	False	NA	-1	True	ATTAAA	-18	NA	117671502	117656810	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661629_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018718	chr11	-	2911	20	NNC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	-25	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	77.1521861893428	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTGTGCTTCAGGATG	NA	False	NA	-4	True	ATTAAA	-15	NA	117671509	117656813	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663770_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018726	chr11	+	1547	4	FSM	ENSMUSG00000048277.16	ENSMUST00000026649.14	1520	4	-25	-2	-25	2	multi-exon	FALSE	canonical	3	588	junction_1	45.536310297998	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTGCTGGGTGGCGCCT	NA	False	NA	16	True	AATAAA	-16	NA	117700468	117705111	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_117700630_117703284_117703523_117703871_117704012_117704103
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018733	chr11	+	527	1	ISM	ENSMUSG00000048277.16	ENSMUST00000026649.14	1520	4	4089	0	766	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117704582	117705109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_+_117704600_117705100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018737	chr11	-	1249	7	FSM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	209	-18	-16	18	multi-exon	FALSE	canonical	3	796	junction_5	107.729084074615	398	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGGTTTCCCTAACTTGC	NA	False	NA	1	True	ATTAAA	-34	NA	117716709	117706333	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716426_117716459_117716539
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018768	chr11	-	2080	2	NNC	ENSMUSG00000053113.4	novel	2552	2	NA	NA	3	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTGAGCCTTTCTTTC	NA	False	NA	NA	False	AATAAA	-30	NA	117860009	117856904	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_117858892_117859916
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018775	chr11	-	2263	2	NNC	ENSMUSG00000053113.4	novel	2552	2	NA	NA	400	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTGAGCCTTTCTTTC	NA	False	NA	NA	False	AATAAA	-30	NA	117859612	117856904	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_117859145_117859589
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018777	chr11	-	2700	3	NIC	ENSMUSG00000053113.4	novel	2552	2	NA	NA	30	0	combination_of_known_junctions	FALSE	canonical	1	22	junction_2	648.5	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTGAGCCTTTCTTTC	NA	False	NA	NA	False	AATAAA	-30	NA	117860843	117856904	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_117859145_117859700_117859929_117860611
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018822	chr11	-	1009	5	FSM	ENSMUSG00000017466.10	ENSMUST00000017610.10	3709	5	180	2520	180	112	multi-exon	FALSE	canonical	3	24	junction_3	3.74165738677394	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTTCACGCTAGTGTGA	2446	False	NA	-7	True	AATAAA	-16	NA	118246152	118194414	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_118194723_118201401_118201527_118208244_118208354_118210934_118211036_118245786
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018842	chr11	+	2641	14	FSM	ENSMUSG00000033857.13	ENSMUST00000135383.9	4064	14	-2	1425	-2	11	multi-exon	FALSE	canonical	3	81	junction_11	10.2772224737595	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTTCTTTTGAGAATGG	NA	False	NA	17	True	CATAAA	-24	NA	118367652	118378610	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_118367931_118369708_118369780_118369911_118370114_118372101_118372251_118372699_118372858_118373357_118373507_118373707_118373874_118375243_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377273_118377380_118377647_118377763_118377916
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018869	chr11	-	2657	5	FSM	ENSMUSG00000039989.8	ENSMUST00000026665.8	5179	5	-60	2582	-60	1218	multi-exon	FALSE	canonical	3	62	junction_3	7	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGTCCGAGATTAGCT	NA	False	NA	0	True	ATTAAA	-21	NA	118977107	118970980	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_118973128_118973342_118973410_118975388_118975455_118976582_118976627_118976774
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018877	chr11	-	2878	12	FSM	ENSMUSG00000039976.5	ENSMUST00000207655.2	2855	12	-10	-13	-10	13	multi-exon	FALSE	canonical	0	0	junction_1	2.02055552462662	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGGAGGGGGGAGGGAG	NA	False	NA	NA	False	AAGAAA	-2	NA	119119297	119037947	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_119038643_119039756_119039904_119041853_119042034_119044714_119044902_119045907_119046043_119046845_119046995_119047468_119047634_119048565_119048714_119049556_119049719_119099596_119100195_119101330_119101567_119119221
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018888	chr11	+	3524	20	FSM	ENSMUSG00000025579.15	ENSMUST00000106259.9	3633	20	122	-13	-17	13	multi-exon	TRUE	canonical	3	393	junction_7	40.3001893687597	491	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATGTCTATATATGACC	NA	False	NA	32	True	AATAAA	-33	NA	119158834	119176293	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018939	chr11	+	3183	8	FSM	ENSMUSG00000039850.17	ENSMUST00000106245.9	5126	8	-1	1944	-1	-86	multi-exon	FALSE	canonical	3	37	junction_3	3.65892813567591	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTGTCTGGGGAGCCT	6536	False	NA	9	True	ATTAAA	-20	NA	119382454	119400319	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_119382783_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018952	chr11	+	3192	12	ISM	ENSMUSG00000025583.16	ENSMUST00000147781.8	6138	33	268635	169	14889	0	3prime_fragment	TRUE	canonical	3	94	junction_2	17.6812923502088	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCGCTGCCCTTGCCAG	NA	False	NA	8	True	AATAAA	-15	NA	119763158	119790233	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_+_119763226_119764979_119765091_119775749_119775856_119777862_119777978_119779367_119779493_119781939_119782045_119783377_119783485_119785081_119785210_119785744_119785832_119786728_119786846_119787245_119787376_119788239
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018954	chr11	+	1586	8	FSM	ENSMUSG00000025371.13	ENSMUST00000026434.13	1557	8	-24	-5	-24	5	multi-exon	FALSE	canonical	3	311	junction_5	11.6303613925986	245	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTAGTGTCTTGGTTCCCT	NA	False	NA	23	True	ATTAAA	-38	NA	119804611	119810379	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_119804764_119806238_119806349_119806457_119806546_119806850_119806938_119807506_119807573_119807754_119807836_119808809_119808865_119809432
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018962	chr11	+	2070	14	FSM	ENSMUSG00000025372.17	ENSMUST00000026436.10	2394	14	324	0	-29	0	multi-exon	TRUE	canonical	3	19	junction_13	8.07215976759687	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGTGTGTGGTCTGTTGT	NA	False	NA	10	True	AATAAA	-16	NA	119833912	119897608	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119897184
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018970	chr11	+	2555	13	FSM	ENSMUSG00000025372.17	ENSMUST00000106231.8	4005	13	329	1121	-24	-699	multi-exon	FALSE	canonical	3	21	junction_12	7.16278964898143	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGAAAAAGGACTATTTTT	NA	False	NA	NA	False	NA	NA	NA	119833917	119892326	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000018974	chr11	-	3607	26	FSM	ENSMUSG00000039781.15	ENSMUST00000106227.8	3578	26	-20	-9	-20	9	multi-exon	FALSE	canonical	0	0	junction_17	26.0287840668749	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTTGTCTTTCTCTACT	NA	False	NA	0	True	AGTAAA	-36	NA	119977673	119955246	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_119955536_119955610_119955672_119956213_119956378_119956463_119956642_119956736_119956880_119957519_119957595_119957746_119957865_119957955_119958064_119958771_119958974_119959523_119959627_119961114_119961232_119961310_119961437_119961617_119961729_119962184_119962362_119962702_119962886_119963235_119963331_119963663_119963803_119963953_119964071_119964566_119964685_119966389_119966537_119966914_119967029_119967744_119967867_119968152_119968268_119972069_119972165_119974621_119974816_119977477
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019057	chr11	-	1969	6	FSM	ENSMUSG00000062825.16	ENSMUST00000071555.13	1952	6	-14	-3	-14	3	multi-exon	TRUE	canonical	3	5636	junction_4	454.292680988809	5792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTTCTGGTTTGGCAC	NA	False	NA	-18	True	AATAAA	-21	NA	120239382	120236512	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019061	chr11	-	1766	7	NNC	ENSMUSG00000062825.16	novel	1189	7	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2433.92299362344	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTTTTCTGGTTTGGC	NA	False	NA	-20	True	AATAAA	-19	NA	120239325	120236514	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_120236860_120237003_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019070	chr11	-	2811	1	FSM	ENSMUSG00002076664.1	ENSMUST00020182918.1	84	1	-1680	-1047	-1680	1047	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTTTTCTGGTTTGGC	NA	False	NA	-20	True	AATAAA	-19	NA	120239325	120236514	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_120236500_120239300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019073	chr11	-	2191	5	NIC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	5636	junction_3	499.114465829232	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239321	120236515	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_120237360_120237462_120237645_120237736_120238702_120238794_120238924_120239250
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019117	chr11	+	2794	6	FSM	ENSMUSG00000049957.15	ENSMUST00000058370.14	2778	6	-16	0	-16	0	multi-exon	FALSE	canonical	3	99	junction_3	16.7164589551735	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGAGAACATTCTTGTT	192	False	NA	NA	False	AATAAA	-20	NA	120348924	120355184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_120349105_120349437_120349572_120350867_120351091_120352541_120352625_120352831_120352912_120353090
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019141	chr11	+	3165	21	NNC	ENSMUSG00000025793.18	novel	2903	22	NA	NA	29	0	intron_retention	FALSE	canonical	0	0	junction_17	116.185153956949	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	8211	False	NA	13	True	AATAAA	-14	NA	120358489	120374805	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369912_120370124_120370378_120370552_120370624_120370770_120370849_120371025_120373355_120373490_120373569_120373690_120373840
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019143	chr11	+	2872	22	NNC	ENSMUSG00000025793.18	novel	2900	22	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	128.328677360544	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	8211	False	NA	13	True	AATAAA	-14	NA	120358489	120374805	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368438_120369161_120369201_120369287_120369432_120369520_120369581_120369915_120370124_120370378_120370552_120370624_120370770_120370849_120371025_120373355_120373490_120373569_120373690_120373840_120373928_120374214
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019153	chr11	+	2870	22	NNC	ENSMUSG00000025793.18	novel	2900	22	NA	NA	55	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	127.514296028367	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	8237	False	NA	13	True	AATAAA	-14	NA	120358515	120374805	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369140_120369201_120369287_120369432_120369520_120369581_120369915_120370124_120370378_120370552_120370624_120370770_120370849_120371025_120373355_120373490_120373569_120373690_120373840_120373928_120374214
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019182	chr11	-	2943	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	-81	-1	-81	1	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	797	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTGCTGCTTTATTTTG	3286	False	NA	-3	True	AATAAA	-22	NA	120464160	120451122	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019207	chr11	-	1878	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	-11	0	-11	0	multi-exon	FALSE	canonical	3	3168	junction_5	160.793780974265	1557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	-10	True	AATAAA	-22	NA	120472461	120468929	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019210	chr11	-	1983	6	FSM	ENSMUSG00000025132.14	ENSMUST00000067936.6	2150	6	172	-5	172	0	multi-exon	TRUE	canonical	3	51	junction_5	1338.58961597646	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	-10	True	AATAAA	-22	NA	120472034	120468929	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120471815
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019224	chr11	-	3557	6	FSM	ENSMUSG00000025134.3	ENSMUST00000026125.3	3527	6	-35	5	-35	-5	multi-exon	FALSE	canonical	3	3672	junction_5	281.391257859941	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGTTGATCACACCTCG	4271	False	NA	-2	True	AATAAA	-24	NA	120489226	120482951	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_120485694_120485805_120485981_120486080_120486145_120486745_120486894_120488460_120488593_120488930
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019247	chr11	-	1891	14	FSM	ENSMUSG00000025137.16	ENSMUST00000026129.16	1881	14	19	-29	-4	29	multi-exon	FALSE	canonical	3	184	junction_7	79.5574296680368	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAACCGGTCCACATCCG	NA	False	NA	23	True	AATAAA	-45	NA	120508743	120500883	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019268	chr11	-	2424	13	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	48	junction_6	110.81174601799	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTAGGCTCCCGACCC	NA	False	NA	-7	True	AATAAA	-15	NA	120508743	120500913	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503428_120503671_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019285	chr11	-	1894	8	FSM	ENSMUSG00000025140.16	ENSMUST00000026133.15	1861	8	-24	-9	-3	9	multi-exon	FALSE	canonical	3	750	junction_7	93.9428832116752	319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTCCAGTCAACCTATTT	NA	False	NA	-7	True	AATAAA	-22	NA	120534598	120530232	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019322	chr11	-	2295	11	FSM	ENSMUSG00000042988.11	ENSMUST00000106177.8	2212	11	-83	0	-83	0	multi-exon	FALSE	canonical	3	96	junction_10	9.96042167782067	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGCTCACCCTGAAC	9713	False	NA	NA	False	ATTAAA	-21	NA	120551515	120544613	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547578_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019326	chr11	-	2283	13	NNC	ENSMUSG00000042988.11	novel	2012	12	NA	NA	-832	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_12	31.8612443085465	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGCTCACCCTGAAC	9872	False	NA	NA	False	ATTAAA	-21	NA	120552833	120544613	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547578_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820_120551192_120551946_120552181_120552755
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019338	chr11	+	1839	16	FSM	ENSMUSG00000025142.19	ENSMUST00000026135.15	1820	16	-19	0	0	0	multi-exon	FALSE	canonical	3	887	junction_3	62.8477525453377	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120563798	120600273	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019346	chr11	+	2051	14	NIC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	-4	0	intron_retention	FALSE	canonical	3	887	junction_3	62.6465618847222	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120563877	120600273	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120600073_120600169
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019357	chr11	+	2304	15	ISM	ENSMUSG00000025142.19	ENSMUST00000026135.15	1820	16	385	0	3	0	3prime_fragment	FALSE	canonical	3	887	junction_2	62.0699079215344	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120564202	120600273	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_+_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019364	chr11	+	540	5	NNC	ENSMUSG00000025142.19	novel	468	3	NA	NA	2666	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	436.370542085508	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120596005	120600273	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_+_120596144_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019372	chr11	-	554	4	NIC	ENSMUSG00000025144.18	novel	606	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	126	junction_3	359.512942125253	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604564	120601767	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_120602133_120602215_120602305_120602528_120602583_120604518
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019373	chr11	-	2490	3	ISM	ENSMUSG00000025144.18	ENSMUST00000055424.13	606	5	0	0	0	0	intron_retention	FALSE	canonical	3	880	junction_2	8.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604564	120601767	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr11_-_120602133_120602215_120602305_120602528
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019387	chr11	+	2474	18	FSM	ENSMUSG00000025145.14	ENSMUST00000026139.14	2492	18	18	0	-8	0	multi-exon	FALSE	canonical	3	36	junction_12	7.88805763716247	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTCCAGTTCCTTTCT	6082	False	NA	NA	False	GATAAA	-1	NA	120604768	120611954	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_120604880_120605098_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609475_120609547_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019409	chr11	+	1595	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-1	1	multi-exon	FALSE	canonical	3	1960	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTACAAGAGTCCTGCCTC	NA	False	NA	NA	False	NA	NA	NA	120653618	120655246	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr11_+_120653817_120653849
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019414	chr11	+	1627	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	-1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTACAAGAGTCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	120653618	120655245	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_120653600_120655200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019445	chr11	+	2073	14	FSM	ENSMUSG00000025156.18	ENSMUST00000172809.2	2000	14	-72	-1	-72	1	multi-exon	TRUE	canonical	3	238	junction_1	255.452956564905	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGGCTCCTTTCCTTTCT	1562	False	NA	3	True	ATTAAA	-20	NA	120675268	120679929	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_120675552_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019466	chr11	-	2125	14	NIC	ENSMUSG00000025155.16	novel	1930	14	NA	NA	2	1	combination_of_known_splicesites	FALSE	canonical	1	60	junction_5	245.992976279198	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCAGAGATCTCTAGTGAT	NA	False	NA	-15	True	AATAAA	-18	NA	120687227	120680025	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019471	chr11	-	2128	14	NNC	ENSMUSG00000025155.16	novel	1863	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	60	junction_5	294.527482367643	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAGAGATCTCTAGTGA	NA	False	NA	-16	True	AATAAA	-17	NA	120687224	120680026	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686757
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019473	chr11	-	1914	14	NIC	ENSMUSG00000025155.16	novel	1930	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	60	junction_5	296.979189596265	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAGAGATCTCTAGTGA	NA	False	NA	-16	True	AATAAA	-17	NA	120687221	120680026	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686968
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019487	chr11	-	2325	13	NIC	ENSMUSG00000025155.16	novel	1930	14	NA	NA	0	-1	intron_retention	FALSE	canonical	1	60	junction_5	232.013454470976	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGCAGAGATCTCTAGT	NA	False	NA	-18	True	AATAAA	-15	NA	120687215	120680028	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019513	chr11	+	2132	5	FSM	ENSMUSG00000025161.17	ENSMUST00000100130.10	2386	5	29	225	15	0	multi-exon	FALSE	canonical	3	33	junction_1	128.437484793186	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTCTGGCCCTCATTAG	NA	False	NA	22	True	NA	NA	NA	120839921	120849601	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_120839977_120846051_120846296_120846624_120846769_120847180_120847949_120848680
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019520	chr11	-	2345	9	FSM	ENSMUSG00000025162.19	ENSMUST00000239115.2	1823	9	6	-528	6	528	multi-exon	FALSE	canonical	3	23	junction_1	191.835052844885	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTTTCTAGGTCCTT	782	False	NA	NA	False	ATTAAA	-18	NA	120882150	120849287	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_120850122_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019550	chr11	+	1739	3	FSM	ENSMUSG00000039329.9	ENSMUST00000039088.9	1745	3	6	0	6	0	multi-exon	FALSE	canonical	3	732	junction_1	1	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTATGTGTATGGTTT	NA	False	NA	26	True	AATAAA	-20	NA	121036974	121039145	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_+_121037049_121037353_121037428_121037554
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019558	chr11	-	1309	9	FSM	ENSMUSG00000025169.7	ENSMUST00000026169.7	1308	9	-1	0	-1	0	multi-exon	FALSE	canonical	3	143	junction_7	19.9483708607996	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGATCTGGGCGCTGC	NA	False	NA	-7	True	AGTAAA	-41	NA	121095538	121068416	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_121068765_121074236_121074361_121085905_121086060_121087562_121087620_121088256_121088322_121090591_121090635_121091736_121091813_121093716_121093935_121095314
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019570	chr11	-	2397	7	FSM	ENSMUSG00000039294.15	ENSMUST00000038709.14	2417	7	20	0	16	0	multi-exon	FALSE	canonical	0	0	junction_6	26.4790273403101	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120115	121113413	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119864
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019591	chr11	-	2307	10	FSM	ENSMUSG00000025173.14	ENSMUST00000026173.13	2321	10	14	0	14	0	multi-exon	FALSE	canonical	3	419	junction_4	31.7350139610984	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGAGCCATATGTAATG	NA	False	NA	1	True	AATAAA	-33	NA	121245257	121218049	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221059_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019620	chr11	-	2279	13	FSM	ENSMUSG00000046605.15	ENSMUST00000067399.14	2864	13	15	570	15	-570	multi-exon	FALSE	canonical	3	46	junction_9	15.1867998238236	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCTAACAATGTAAAGG	NA	False	NA	-7	True	AATAAA	-20	NA	121563964	121507592	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121542434_121542500_121561695_121561796_121561882_121562000_121563810
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019627	chr11	-	2758	4	Intergenic	novelGene_79	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	134	junction_1	27.2070252365491	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCTTGTCTTGCTTGGTT	NA	False	NA	-2	True	NA	NA	NA	121816153	121795184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr11_-_121797657_121798775_121798837_121799014_121799142_121816055
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019641	chr12	-	3556	6	FSM	ENSMUSG00000020671.10	ENSMUST00000021001.10	3513	6	-43	0	-43	0	multi-exon	FALSE	canonical	3	1286	junction_2	62.4422933595492	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTTTGGTTTTCAT	NA	False	NA	-2	True	TATAAA	-19	NA	3360012	3297427	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019678	chr12	+	2423	20	NNC	ENSMUSG00000071454.14	novel	2390	20	NA	NA	-12	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	90.3998198218487	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTGTGTTCCTTCCGG	NA	False	NA	28	True	AAAAAG	-8	NA	3622404	3831399	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646867_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3824569_3824611_3829618_3829655_3831105
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019754	chr12	+	241	1	Intergenic	novelGene_80	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGCCAACCAACTGAACA	NA	False	NA	NA	False	AATGAA	-28	NA	4351054	4351295	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr12_+_4351100_4351300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019779	chr12	-	2267	7	FSM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	152	277	-114	40	multi-exon	FALSE	canonical	3	1036	junction_3	130.609362434534	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTGCCCTGGCTGTA	NA	False	NA	NA	False	NA	NA	NA	4957553	4929308	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019811	chr12	+	2959	7	FSM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	12.8765506078125	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCAGTGTTGTTCTTTTCC	NA	False	NA	NA	False	AGTAAA	-24	NA	8363431	8393824	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_8363498_8367784_8367951_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019858	chr12	+	2525	20	ISM	ENSMUSG00000020608.8	ENSMUST00000020931.6	5603	27	195	20456	-24	-91	5prime_fragment	TRUE	canonical	3	574	junction_19	48.6857183265798	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGGAGAATCTTAAAAGTC	4512	False	NA	NA	False	AATAAA	-43	NA	11316081	11349330	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019871	chr12	+	725	1	FSM	ENSMUSG00000078377.6	ENSMUST00000105169.6	614	1	-45	-66	-45	66	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACTAAGAACATCCATTAT	NA	False	NA	NA	False	AATAAA	-33	NA	12073000	12073725	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_12073000_12073700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019877	chr12	+	400	1	FSM	ENSMUSG00000066629.3	ENSMUST00000085720.3	315	1	-36	-49	-36	49	mono-exon	FALSE	NA	NA	NA	NA	NA	2017	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTTCAATGGACAGGATT	NA	False	NA	NA	False	AATAAA	-28	NA	12961986	12962386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_12962000_12962400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019899	chr12	-	2530	26	FSM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	-12	2324	-12	-2324	multi-exon	FALSE	canonical	3	1685	junction_15	174.121171601847	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTGTCTTCTTTTAAA	NA	False	NA	-1	True	AATAAA	-24	NA	13299226	13269297	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019901	chr12	-	2514	26	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	11	-2324	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	440.653449322708	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTGTCTTCTTTTAAA	NA	False	NA	-1	True	AATAAA	-24	NA	13299203	13269297	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299097
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019914	chr12	-	4086	20	FSM	ENSMUSG00000020593.17	ENSMUST00000221230.2	4114	20	7	21	0	-21	multi-exon	FALSE	canonical	3	46	junction_15	24.5031514734934	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAGATAGAAAGAAGAG	7246	False	NA	NA	False	NA	NA	NA	16639767	16587061	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019941	chr12	+	2936	12	NIC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	-6	-404	intron_retention	FALSE	canonical	3	2590	junction_5	184.09200897539	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAATGCTGATAAATGTAT	NA	False	NA	10	True	AATAAA	-12	NA	17316589	17334367	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019952	chr12	+	3054	21	FSM	ENSMUSG00000061458.10	ENSMUST00000046011.12	3021	21	-33	0	-33	0	multi-exon	FALSE	canonical	3	221	junction_7	25.2103153490788	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	14	True	AATAAA	-17	NA	17398425	17480096	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019976	chr12	+	2030	12	NNC	ENSMUSG00000011179.9	novel	2208	12	NA	NA	-7	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	491.796773185533	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCATCAGGGAATGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	17594965	17601080	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_17595170_17597096_17597193_17597283_17597402_17597633_17597808_17597950_17598124_17598309_17598445_17598545_17598628_17598787_17598872_17599424_17599588_17599668_17599782_17599863_17600079_17600607
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000019992	chr12	+	1654	5	NIC	ENSMUSG00000071379.3	novel	1526	4	NA	NA	-46	-4	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	31.8541598539343	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCCT	8578	False	NA	13	True	AATAAA	-1	NA	17740810	17841930	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_17741048_17817214_17817301_17836147_17836550_17837545_17837652_17841107
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020016	chr12	+	196	1	Intergenic	novelGene_81	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCACATTGACATTCACC	NA	False	NA	NA	False	NA	NA	NA	20323549	20323745	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr12_+_20323500_20323700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020019	chr12	+	748	3	Fusion	ENSMUSG00000116606.2_ENSMUSG00000112951.3	novel	654	4	NA	NA	-300	-1589	multi-exon	FALSE	canonical	3	59	junction_1	44.5	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTATTTATTTATTAT	NA	False	NA	NA	False	NA	NA	NA	20465637	20483829	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr12_+_20466065_20483306_20483434_20483635
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020021	chr12	+	1455	4	Fusion	ENSMUSG00000116606.2_ENSMUSG00000112951.3	novel	654	4	NA	NA	-300	26663	multi-exon	FALSE	canonical	0	0	junction_3	60.8331050224026	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCTT	NA	False	NA	NA	False	AATAAA	-1	NA	20465637	20512081	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr12_+_20466065_20483306_20483434_20483635_20483697_20511241
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020022	chr12	+	1295	4	Fusion	ENSMUSG00000116537.2_ENSMUSG00000116606.2_ENSMUSG00000112951.3	novel	654	4	NA	NA	-300	22	multi-exon	FALSE	canonical	3	21	junction_3	53.2228021309163	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAACAAACCTCTAATGAG	NA	False	NA	NA	False	NA	NA	NA	20465637	20509234	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr12_+_20466065_20483306_20483434_20483635_20483697_20508554
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020030	chr12	+	3029	1	FSM	ENSMUSG00000113749.2	ENSMUST00000220565.2	721	1	-2085	-223	-2085	223	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGCCCATGTTTATAAAG	NA	False	NA	NA	False	NA	NA	NA	20465637	20468666	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_20465600_20468700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020077	chr12	+	681	4	FSM	ENSMUSG00000062054.8	ENSMUST00000223345.2	1890	4	6	1203	6	-621	multi-exon	FALSE	canonical	3	412	junction_2	19.3964487013015	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGCAATTTTGCTACTC	NA	False	NA	19	True	NA	NA	NA	21366420	21370156	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020100	chr12	-	1492	6	NNC	ENSMUSG00000076432.14	novel	2197	6	NA	NA	48	-344	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_5	1388.32408320248	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTCGTAGCTCTGGTAT	NA	False	NA	NA	False	AATAAA	-18	NA	21467541	21440676	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467130_21467504
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020106	chr12	+	636	5	NIC	ENSMUSG00000109975.2	novel	363	4	NA	NA	-9	166	combination_of_known_junctions	FALSE	canonical	3	112	junction_2	32.0507410210747	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTTCTGTCTTAGTTA	6091	False	NA	NA	False	ATTAAA	-18	NA	21593298	21604688	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_21593347_21595309_21595401_21599867_21599956_21604009_21604108_21604377
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020117	chr12	+	4197	1	Intergenic	novelGene_82	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTATTAGCTAATGCC	NA	False	NA	NA	False	NA	NA	NA	23916761	23920958	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr12_+_23916800_23921000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020158	chr12	+	2120	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	39	-49	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	1986.03784480247	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGGCATACAAGTAT	NA	False	NA	23	True	AATAAA	-23	NA	24758278	24764096	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_24758460_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020162	chr12	+	2106	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-49	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1998.14616551578	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGGCATACAAGTAT	NA	False	NA	23	True	AATAAA	-23	NA	24758281	24764096	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760494_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020179	chr12	+	2851	1	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-636	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATTAAATTTAAAGACGTG	NA	False	NA	NA	False	NA	NA	NA	24758281	24761132	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_24758300_24761100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020212	chr12	+	1445	8	FSM	ENSMUSG00000020630.10	ENSMUST00000020959.9	1455	8	14	-4	-8	4	multi-exon	TRUE	canonical	3	155	junction_3	35.1318217284442	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTAGTTTGAGTTACTGT	NA	False	NA	17	True	AATAAA	-25	NA	28699614	28709592	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020230	chr12	-	3229	12	FSM	ENSMUSG00000020628.17	ENSMUST00000168129.10	3230	12	1	0	1	0	multi-exon	FALSE	canonical	3	62	junction_11	21.4240924087157	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTGAGGAGACATGAGC	8231	False	NA	-29	True	AATAAA	-20	NA	28800470	28740626	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800327
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020259	chr12	-	2297	6	FSM	ENSMUSG00000044573.17	ENSMUST00000062740.15	3066	6	0	769	0	-439	multi-exon	FALSE	canonical	3	836	junction_3	311.492279198057	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGGTGCTTCTTGGT	NA	False	NA	-10	True	ATTAAA	-12	NA	30961570	30944093	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954868_30954983_30955067_30955142_30961488
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020299	chr12	+	207	1	Intergenic	novelGene_83	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACTGCTTAAGACTAAGTA	NA	False	NA	NA	False	NA	NA	NA	31745927	31746134	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr12_+_31745900_31746100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020301	chr12	+	210	1	Intergenic	novelGene_84	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAGTGGGAGAGGCAGTTT	NA	False	NA	NA	False	AAAAAG	-5	NA	31850670	31850880	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr12_+_31850700_31850900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020305	chr12	-	2659	11	FSM	ENSMUSG00000002996.18	ENSMUST00000172314.9	3142	11	290	193	-11	-193	multi-exon	FALSE	canonical	3	134	junction_10	30.1004983347452	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGGTTGACTGAATTCA	NA	False	NA	1	True	AATAAA	-25	NA	32000244	31976445	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020311	chr12	-	2716	11	NIC	ENSMUSG00000002996.18	novel	3142	11	NA	NA	1	-202	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	68.426310729134	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTGATTTCTGGTTGA	NA	False	NA	-8	True	AATAAA	-16	NA	32000219	31976454	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000103
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020319	chr12	+	2807	11	FSM	ENSMUSG00000020572.9	ENSMUST00000020886.9	4527	11	-21	1741	-21	-1741	multi-exon	FALSE	canonical	3	823	junction_5	70.9532240282286	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGACATCATTTATTAATTT	NA	False	NA	14	True	ATTAAA	-18	NA	32870312	32901607	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_32870626_32880165_32880323_32883030_32883135_32884900_32885030_32888297_32888457_32889149_32889287_32890923_32891150_32892683_32892804_32896704_32896846_32898615_32898751_32900421
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020333	chr12	+	2365	4	FSM	ENSMUSG00000020561.9	ENSMUST00000020877.9	4325	4	-24	1984	-24	1693	multi-exon	FALSE	canonical	3	454	junction_3	49.8687165354081	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTTGTCTTTCCCTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	33479609	33489407	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_33479908_33483503_33483646_33486934_33487144_33487691
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020339	chr12	+	4205	26	FSM	ENSMUSG00000020590.17	ENSMUST00000048519.17	6231	26	6	2020	6	72	multi-exon	TRUE	canonical	3	72	junction_14	10.0218960281975	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTTGGTGTATACATTTA	NA	False	NA	NA	False	AATAAA	-15	NA	35097190	35195458	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136028_35136861_35136984_35141361_35141484_35141567_35141670_35142823_35142913_35148228_35148313_35150537_35150677_35151019_35151109_35153039_35153140_35155105_35155300_35156711_35156817_35157422_35157556_35160622_35160661_35162433_35162504_35169764_35169905_35172916_35173025_35174428_35174540_35182019_35182182_35183307_35183380_35188024_35188171_35188398_35188468_35190166_35190280_35194087
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020344	chr12	-	1985	6	FSM	ENSMUSG00000020577.18	ENSMUST00000020896.17	1932	6	-51	-2	-40	2	multi-exon	FALSE	canonical	3	804	junction_3	64.3913037606787	285	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGGTGTTTAAATCAAAG	NA	False	NA	-2	True	AATAAA	-22	NA	36092539	36064553	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_36065772_36070488_36070603_36071799_36071914_36072751_36072833_36073903_36074072_36092249
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020352	chr12	-	1890	12	FSM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	-17	-2	-17	2	multi-exon	FALSE	canonical	3	931	junction_9	81.950499068161	419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTCAGAGCGTGTTT	NA	False	NA	-9	True	AATAAA	-23	NA	36206841	36141831	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020361	chr12	+	2444	10	FSM	ENSMUSG00000036188.5	ENSMUST00000041640.5	2456	10	14	-2	14	2	multi-exon	FALSE	canonical	3	149	junction_5	20.5882622678524	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTTTCATAATTCGTGT	NA	False	NA	23	True	AATAAA	-22	NA	36207126	36247292	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_36207423_36215868_36215934_36220447_36220587_36226578_36226678_36232346_36232508_36236724_36236940_36237648_36237785_36243668_36243798_36244982_36245113_36246218
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020368	chr12	+	2561	13	NNC	ENSMUSG00000004151.18	novel	6576	13	NA	NA	-21	402	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	7.23225798458238	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTGTCTCCTTTCACTA	506	False	NA	NA	False	AATGAA	-27	NA	38830261	38916650	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_38830421_38830846_38830979_38831797_38831886_38833236_38833285_38843169_38843224_38877776_38877907_38881079_38881269_38885067_38885316_38902218_38902287_38904158_38904228_38906939_38907110_38911285_38911388_38915546
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020378	chr12	-	1812	12	FSM	ENSMUSG00000001627.13	ENSMUST00000001672.12	3378	12	4	1562	0	2	multi-exon	FALSE	canonical	3	551	junction_11	48.4295518005619	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGTAGTGAGCAGATG	NA	False	NA	-1	True	AATAAA	-23	NA	40273184	40253127	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020393	chr12	+	382	4	FSM	ENSMUSG00000056899.11	ENSMUST00000140790.2	347	4	-47	12	-10	2	multi-exon	FALSE	canonical	3	185	junction_1	32.8667342798493	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAACTCAGTAACTTACT	NA	False	NA	NA	False	NA	NA	NA	41074078	41160944	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_41074145_41074559_41074633_41118308_41118446_41160838
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020407	chr12	+	2860	1	Intergenic	novelGene_85	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAAATTGTATCTCCGT	NA	False	NA	NA	False	NA	NA	NA	51022202	51025062	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr12_+_51022200_51025100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020418	chr12	+	2113	25	FSM	ENSMUSG00000020952.11	ENSMUST00000021335.7	2096	25	-14	-3	-14	3	multi-exon	TRUE	canonical	3	358	junction_5	42.0133700610757	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTATTCTTGTTTGAAAAA	NA	False	NA	18	True	AATAAA	-18	NA	51424348	51496887	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297_51462380_51469689_51469787_51472820_51472892_51474647_51474728_51478270_51478334_51480013_51480090_51486065_51486120_51489313_51489367_51491766_51491801_51492453_51492520_51494354_51494424_51496689
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020450	chr12	+	1202	11	FSM	ENSMUSG00000035142.19	ENSMUST00000040090.16	2987	11	9	1776	9	-1776	multi-exon	FALSE	canonical	3	215	junction_4	16.265300489078	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGATGATTCTGTATTTGG	NA	False	NA	19	True	AATAAA	-28	NA	52144528	52357751	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_52144675_52145135_52145284_52147249_52147285_52190751_52190843_52227874_52227915_52227999_52228091_52317821_52317916_52333120_52333207_52349463_52349585_52352580_52352664_52357484
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020482	chr12	-	1054	10	ISM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	24	10493	8	33	5prime_fragment	FALSE	canonical	3	826	junction_9	114.99565209172	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGGTGACATGTCAACA	NA	False	NA	1	True	AATAAA	-25	NA	54842464	54803626	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr12_-_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020670	chr12	+	877	4	NNC	ENSMUSG00000055884.9	novel	1682	7	NA	NA	-3	-6654	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	59.9462722406953	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGATTAAAAAGCAAAAGGA	9277	False	NA	NA	False	NA	NA	NA	65122373	65134204	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_65122952_65123815_65123989_65129805_65129884_65134156
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020672	chr12	+	4293	15	ISM	ENSMUSG00000055884.9	ENSMUST00000058889.5	7775	23	-6	18218	-3	-4477	5prime_fragment	FALSE	canonical	3	55	junction_4	34.0893932872657	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTAAAGTCCCCGGAGG	9277	False	NA	NA	False	AAAAAG	-4	NA	65122373	65160614	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr12_+_65122952_65123815_65123989_65129805_65129884_65134931_65135091_65137692_65137825_65139129_65139263_65140426_65140544_65141644_65141732_65142494_65142680_65144075_65144283_65146021_65146227_65148334_65148487_65149335_65149492_65151801_65153666_65160547
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020682	chr12	-	1598	7	ISM	ENSMUSG00000047534.18	ENSMUST00000052201.9	4017	14	-9	20026	9	13	5prime_fragment	FALSE	canonical	3	216	junction_5	67.8298524905435	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGCAGAAGATAAAGAAACT	NA	False	NA	NA	False	AAAAAG	-1	NA	65219363	65199533	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr12_-_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020695	chr12	+	668	1	FSM	ENSMUSG00000113948.2	ENSMUST00000221295.2	556	1	-36	-76	-36	76	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATTTCAATAATGCAT	NA	False	NA	NA	False	NA	NA	NA	67557493	67558161	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_67557500_67558200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020696	chr12	+	5341	1	Intergenic	novelGene_86	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTTGGCTACATTTCTT	NA	False	NA	NA	False	NA	NA	NA	68604936	68610277	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr12_+_68604900_68610300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020701	chr12	+	5166	2	Intergenic	novelGene_87	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGTCTTGGCTACATT	NA	False	NA	NA	False	NA	NA	NA	68605039	68610273	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr12_+_68605477_68605544
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020715	chr12	-	529	2	ISM	ENSMUSG00000034892.9	ENSMUST00000037023.9	390	3	97	0	-35	0	intron_retention	FALSE	canonical	3	25878	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGTGTGTTTTGT	NA	False	NA	-10	True	AATAAA	-18	NA	69205863	69204495	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr12_-_69204596_69205434
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020753	chr12	-	2646	26	ISM	ENSMUSG00000020982.10	ENSMUST00000021368.10	4732	33	0	7501	0	4586	5prime_fragment	TRUE	canonical	3	272	junction_2	24.8128998708333	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCAACTTGTAAATGAT	NA	False	NA	NA	False	AATGAA	-18	NA	69403939	69364796	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr12_-_69364955_69367146_69367197_69367300_69367344_69368874_69369125_69371005_69371127_69371206_69371266_69371692_69371751_69374407_69374521_69377861_69377925_69378645_69378750_69384592_69384682_69386492_69386557_69387664_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020765	chr12	+	3831	2	FSM	ENSMUSG00000044147.9	ENSMUST00000050063.9	1534	2	-100	-2197	-100	2197	multi-exon	FALSE	canonical	3	1327	junction_1	0	527	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTGGTTATGTTACTT	NA	False	NA	14	True	AATAAA	-17	NA	69418823	69422754	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_69418998_69419097
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020810	chr12	+	2788	8	FSM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	7	0	7	0	multi-exon	FALSE	canonical	3	450	junction_7	45.1044140108849	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTGGTGTTCTCATAAG	NA	False	NA	13	True	ATTAAA	-16	NA	70499875	70514814	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_70500095_70502785_70502902_70503354_70503401_70505552_70505682_70507118_70507165_70507252_70507355_70511173_70511241_70512751
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020824	chr12	+	1582	13	FSM	ENSMUSG00000021076.7	ENSMUST00000021479.6	4022	13	8	2432	8	225	multi-exon	FALSE	canonical	3	306	junction_4	23.8006769278149	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTAGTTTATTATGTA	9653	False	NA	10	True	AATAAA	-19	NA	70984638	71009060	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020856	chr12	+	1763	8	ISM	ENSMUSG00000034601.18	ENSMUST00000149564.8	5763	30	326	88403	326	13	5prime_fragment	FALSE	canonical	3	118	junction_6	10.3470394069896	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGGAAATGAACAGTCCTA	NA	False	NA	NA	False	AAAAAG	-28	NA	71183947	71201674	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020874	chr12	-	908	1	NIC	ENSMUSG00000019718.9	novel	1831	5	NA	NA	22	-7246	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGCTTCAGTGTCTTTGCC	NA	False	NA	0	True	AATAAA	-25	NA	72132191	72131283	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_-_72131300_72132200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020896	chr12	+	207	1	Intergenic	novelGene_88	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCCTCTTTCCAAAGTAA	3582	False	NA	NA	False	NA	NA	NA	72739459	72739666	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr12_+_72739500_72739700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020908	chr12	+	1978	3	FSM	ENSMUSG00000021096.12	ENSMUST00000223410.2	3900	3	-62	1984	42	-1984	multi-exon	FALSE	canonical	3	365	junction_1	26.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATGCATTTAAGTATTTG	NA	False	NA	NA	False	NA	NA	NA	72808026	72834190	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_72808406_72830456_72831311_72833445
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020943	chr12	+	1618	10	NNC	ENSMUSG00000021109.14	novel	4724	15	NA	NA	97	543	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_1	111.140662736823	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAATATAAACCTGGCAAT	8455	False	NA	NA	False	AATGAA	-4	NA	73954774	73987198	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_73955099_73973327_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020971	chr12	-	3227	14	NNC	ENSMUSG00000021051.11	novel	4810	14	NA	NA	2	12	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_13	53.6105836058162	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGCATCGTGACCAAATTG	NA	False	NA	-4	True	AATAAA	-26	NA	75643000	75499260	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_-_75500588_75506461_75506564_75509075_75509204_75511647_75511768_75513401_75513453_75513565_75513620_75515285_75515395_75516315_75516376_75516505_75516637_75531905_75531999_75540187_75540290_75562375_75562573_75639942_75640104_75642408
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000020985	chr12	-	2200	2	FSM	ENSMUSG00000045690.9	ENSMUST00000062370.9	2979	2	-5	784	-5	17	multi-exon	FALSE	canonical	3	148	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTCGCCGCCGGACGC	6405	False	NA	NA	False	NA	NA	NA	75716316	75678153	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_75680283_75716245
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021006	chr12	+	2854	1	Intergenic	novelGene_89	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAAATTGTATCCCCGT	NA	False	NA	NA	False	NA	NA	NA	76269309	76272163	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr12_+_76269300_76272200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021008	chr12	+	3378	28	FSM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	-117	-20	-117	20	multi-exon	TRUE	canonical	3	837	junction_20	135.484134190258	930	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGCCGTTGATAGACCTA	7794	False	NA	29	True	AATAAA	-37	NA	76301954	76366597	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021042	chr12	+	3441	2	FSM	ENSMUSG00000033454.7	ENSMUST00000042779.4	12190	2	254	8495	254	-8495	multi-exon	FALSE	canonical	3	110	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTTGTTCTATAAAAGT	NA	False	NA	NA	False	AATAAA	-21	NA	76417293	76435229	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_76417505_76431999
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021050	chr12	+	2527	1	FSM	ENSMUSG00000059970.8	ENSMUST00000219555.2	2526	1	3	-4	3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTCTGGCGTTTTCAA	NA	False	NA	NA	False	AGTAAA	-20	NA	76451185	76453712	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_76451200_76453700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021056	chr12	+	4962	18	NIC	ENSMUSG00000052609.10	novel	4535	18	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_13	13.5993079408692	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTGTGGCCTCCTTCC	7220	False	NA	22	True	NA	NA	NA	76580329	76625816	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_76580593_76606902_76607293_76608979_76609078_76610528_76610599_76610870_76610918_76611030_76611182_76611275_76611408_76611571_76611755_76611932_76612026_76612265_76612353_76612557_76612592_76612941_76613041_76618377_76618417_76618820_76618844_76619168_76619520_76620020_76620135_76622630_76624051_76624448
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021066	chr12	+	676	4	FSM	ENSMUSG00000090258.8	ENSMUST00000041262.14	676	4	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_2	1.88561808316413	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGTATGTTTTCTTTT	NA	False	NA	9	True	AATGAA	-3	NA	76812311	76829954	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021072	chr12	-	3352	7	FSM	ENSMUSG00000021062.16	ENSMUST00000021459.14	3158	7	-194	0	161	0	multi-exon	FALSE	canonical	3	60	junction_1	4.01732359773132	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGTGGGTCTGTATGAA	NA	False	NA	-2	True	AATAAA	-18	NA	76869521	76844733	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_76847176_76847339_76847406_76848665_76848756_76849841_76849920_76850341_76850403_76851216_76851278_76868967
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021080	chr12	+	2624	12	FSM	ENSMUSG00000033373.17	ENSMUST00000041008.10	2613	12	-8	-3	-8	3	multi-exon	FALSE	canonical	3	246	junction_4	27.7548298231568	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTCTTTTTTTTTTCCAG	NA	False	NA	17	True	AATAAA	-18	NA	76884179	76968189	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_76884426_76909259_76909325_76920149_76920223_76921805_76921898_76934505_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021095	chr12	+	1874	6	NNC	ENSMUSG00000033373.17	novel	384	2	NA	NA	-7273	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	113.544000281829	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	NA	False	NA	14	True	AATAAA	-15	NA	76948986	76968186	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_76949034_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021189	chr12	+	219	1	Intergenic	novelGene_90	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCCTATGCTTGATTC	3235	False	NA	NA	False	NA	NA	NA	79765615	79765834	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr12_+_79765600_79765800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021191	chr12	-	2990	2	FSM	ENSMUSG00000021127.8	ENSMUST00000021552.3	2990	2	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_1	0	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGTCTATAGGTTTTT	9167	False	NA	92	True	AATAAA	-18	NA	80159787	80154527	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_80157323_80159592
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021208	chr12	-	3265	21	FSM	ENSMUSG00000015143.16	ENSMUST00000021554.16	3734	21	-38	507	-38	49	multi-exon	TRUE	canonical	3	154	junction_2	44.8659113358906	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTACATATTTTATTATAAAA	NA	False	NA	NA	False	NA	NA	NA	80307183	80214827	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_80215255_80215631_80215791_80217459_80217541_80218502_80218650_80219736_80219917_80220853_80220989_80221233_80221417_80222929_80223071_80223961_80224071_80225075_80225227_80228134_80228283_80230166_80230398_80231580_80231674_80239141_80239228_80240409_80240492_80243168_80243248_80243699_80243788_80245754_80245842_80251735_80251856_80256132_80256248_80306760
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021236	chr12	+	2280	2	FSM	ENSMUSG00000066438.7	ENSMUST00000153762.2	956	2	-18	-1306	-18	2	multi-exon	FALSE	canonical	3	14	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACTGGTTTCCTTTGTTTT	NA	False	NA	6	True	CATAAA	-7	NA	80768487	80770990	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_80768870_80769092
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021247	chr12	+	1534	8	FSM	ENSMUSG00000021134.18	ENSMUST00000094693.11	1527	8	-7	0	-7	0	multi-exon	FALSE	canonical	3	1278	junction_1	232.390680904869	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTGTTTCTCTCAA	NA	False	NA	NA	False	AATAAA	-23	NA	80992270	80997281	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021253	chr12	+	1494	8	NIC	ENSMUSG00000021134.18	novel	1498	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	289	junction_7	734.182927769756	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992305	80997277	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021258	chr12	+	2727	7	NIC	ENSMUSG00000021134.18	novel	1498	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	289	junction_6	621.078273828849	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992305	80997277	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996490
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021271	chr12	+	1341	1	NIC	ENSMUSG00000021134.18	novel	1527	8	NA	NA	0	26	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTAGAGCTCTTGTGAT	NA	False	NA	NA	False	AAAACA	-3	NA	80992307	80993648	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_80992300_80993600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021279	chr12	+	3206	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7405	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	43.9365072196991	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81066176	81233188	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_81066271_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021290	chr12	+	3466	13	FSM	ENSMUSG00000021136.14	ENSMUST00000021564.11	3439	13	-23	-4	-3	0	multi-exon	FALSE	canonical	3	56	junction_1	31.9699294476683	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81073578	81233188	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021298	chr12	+	3496	13	FSM	ENSMUSG00000021136.14	ENSMUST00000110347.9	3496	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	48.9003379901975	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81073581	81233188	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197392_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021394	chr12	+	1594	3	FSM	ENSMUSG00000072949.7	ENSMUST00000168120.3	2272	3	-3	681	-3	16	multi-exon	FALSE	canonical	3	130	junction_1	2	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCCTTCAATCTTGGG	2816	False	NA	27	True	AATAAA	-38	NA	84056260	84064464	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_84056741_84061152_84061356_84063553
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021418	chr12	+	2022	10	NIC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	-3	1	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	65.7317782101372	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGGCTCTTGTTTTA	1843	False	NA	12	True	AATAAA	-17	NA	84363885	84390498	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_84363949_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021423	chr12	+	2539	13	NIC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	77.4279234729521	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGGCTCTTGTTTTA	1849	False	NA	12	True	AATAAA	-17	NA	84363891	84390498	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_84363949_84366628_84366836_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021438	chr12	+	1581	12	FSM	ENSMUSG00000021235.14	ENSMUST00000021661.13	1602	12	21	0	-7	0	multi-exon	FALSE	canonical	3	205	junction_6	16.3656564409681	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTTTTCCTCTTCTGA	NA	False	NA	17	True	AATAAA	-17	NA	84408762	84420570	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021444	chr12	-	4977	16	FSM	ENSMUSG00000021236.17	ENSMUST00000110272.9	4972	16	-5	0	-5	0	multi-exon	TRUE	canonical	3	43	junction_8	4.47014789713072	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTTCCTTTGGGTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	84455808	84420648	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84446113_84446187_84452179_84452250_84455743
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021454	chr12	-	3418	12	NNC	ENSMUSG00000021238.12	novel	3399	12	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	52.2240880427876	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTCTTTTCCTTCTTTTG	NA	False	NA	NA	False	AATAAA	-33	NA	84497792	84477490	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486490_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84497658
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021462	chr12	+	2182	6	FSM	ENSMUSG00000085793.4	ENSMUST00000137170.4	2270	6	86	2	86	-2	multi-exon	FALSE	canonical	3	123	junction_1	15.7810012356631	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGAGGCCCAGGTTTTCCT	NA	False	NA	3	True	AATAAA	-14	NA	84498281	84578345	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509227_84576463
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021478	chr12	-	2213	16	ISM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	3212	-125	1229	5	3prime_fragment	FALSE	canonical	3	177	junction_14	24.1887025971492	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACTGATTTTTTTATTTA	NA	False	NA	NA	False	AATAAA	-29	NA	84660932	84649301	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021520	chr12	+	746	3	FSM	ENSMUSG00000021241.8	ENSMUST00000222022.2	485	3	-50	-211	-2	0	multi-exon	FALSE	canonical	3	134	junction_2	92.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820048	84821862	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_84820146_84820348_84820452_84821316
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021539	chr12	+	2773	15	FSM	ENSMUSG00000004789.11	ENSMUST00000053811.10	2764	15	-6	-3	-6	1	multi-exon	FALSE	canonical	3	294	junction_7	23.9123612470237	462	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGGATCTGTGCTCCTT	NA	False	NA	23	True	ATTAAA	-23	NA	85157600	85180865	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021606	chr12	+	3428	10	FSM	ENSMUSG00000034258.5	ENSMUST00000040461.4	3435	10	7	0	7	0	multi-exon	FALSE	canonical	3	40	junction_4	3.8522079607466	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCTCATCATTTAGTG	NA	False	NA	NA	False	AATAAA	-14	NA	85793319	85860359	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_85794364_85829730_85829873_85832861_85833003_85842948_85843017_85845271_85845376_85849908_85850020_85851141_85851248_85851369_85851482_85851969_85852026_85858815
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021610	chr12	-	1585	5	FSM	ENSMUSG00000021252.12	ENSMUST00000021676.12	1169	5	-413	-3	-385	3	multi-exon	FALSE	canonical	3	716	junction_4	65.9104506129339	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGTGTACTTTGGCCTT	NA	False	NA	-1	True	AATAAA	-24	NA	85871709	85862218	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861_85869023_85871244
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021635	chr12	+	3908	6	FSM	ENSMUSG00000021255.18	ENSMUST00000167891.2	1344	6	-1	-2563	-1	0	multi-exon	FALSE	canonical	3	623	junction_2	30.0905300717684	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTTCATGCGTTGTCTGT	NA	False	NA	19	True	AATAAA	-19	NA	86516889	86568402	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021654	chr12	-	3878	10	FSM	ENSMUSG00000021257.15	ENSMUST00000021682.9	3850	10	-28	0	-28	0	multi-exon	FALSE	canonical	3	66	junction_1	10.9341463112378	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTTAGCCTTGTTATTG	NA	False	NA	0	True	AATAAA	-19	NA	86773262	86747275	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_86749216_86749930_86750095_86752040_86752111_86763689_86763801_86764488_86764616_86767003_86767438_86768084_86768155_86768614_86768842_86769618_86770195_86773103
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021677	chr12	+	1674	9	FSM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	-17	-1	-17	1	multi-exon	FALSE	canonical	3	449	junction_5	40.5555175037873	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTTTGTCATGGACAAT	NA	False	NA	14	True	NA	NA	NA	87194474	87211498	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021731	chr12	-	1954	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162961.8	3857	6	-5	1908	-5	0	multi-exon	FALSE	canonical	3	174	junction_2	59.8431282604778	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	-53	True	AATAAA	-22	NA	87490614	87474846	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87490411
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021738	chr12	+	338	3	NIC	ENSMUSG00000021040.16	novel	2701	4	NA	NA	0	-2	combination_of_known_splicesites	FALSE	canonical	3	52	junction_1	1806.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACACGTTTTTATTTGAA	NA	False	NA	30	True	AATAAA	-17	NA	87490681	87496688	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_87490797_87496062_87496171_87496573
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021745	chr12	-	2280	14	FSM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	-46	-2	-46	2	multi-exon	FALSE	canonical	3	814	junction_13	97.7330623652505	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTTATTTAGTGGACG	NA	False	NA	0	True	AATAAA	-22	NA	87519090	87496677	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021762	chr12	+	2178	11	FSM	ENSMUSG00000021044.16	ENSMUST00000101165.9	2158	11	-13	-7	-13	2	multi-exon	TRUE	canonical	3	29	junction_1	14.3544418212622	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCTTCTCAATCATTGT	NA	False	NA	17	True	AATAAA	-30	NA	88327310	88428496	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_88327366_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021792	chr12	-	3729	17	FSM	ENSMUSG00000021003.11	ENSMUST00000021390.9	3832	17	103	0	-9	0	multi-exon	FALSE	canonical	3	22	junction_3	6.15648793956424	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGAGAATTTGCATTTG	NA	False	NA	NA	False	NA	NA	NA	98225615	98168552	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_98170347_98173652_98173730_98174969_98175134_98179240_98179419_98180591_98180743_98182509_98182597_98188858_98188949_98193426_98193555_98197674_98197800_98200500_98200657_98208900_98209032_98212512_98212552_98218268_98218409_98220423_98220538_98222885_98222950_98223130_98223200_98225393
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021797	chr12	-	2475	14	ISM	ENSMUSG00000021003.11	ENSMUST00000021390.9	3832	17	110	9900	-2	-4741	5prime_fragment	FALSE	canonical	3	25	junction_5	5.73992557113158	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAGACATATGCCAAAA	NA	False	NA	NA	False	AATAAA	-1	NA	98225608	98178452	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr12_-_98179419_98180591_98180743_98182509_98182597_98188858_98188949_98193426_98193555_98197674_98197800_98200500_98200657_98208900_98209032_98212512_98212552_98218268_98218409_98220423_98220538_98222885_98222950_98223130_98223200_98225393
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021800	chr12	+	2060	12	FSM	ENSMUSG00000021007.15	ENSMUST00000048402.12	2052	12	-8	0	-8	0	multi-exon	FALSE	canonical	3	39	junction_2	12.115149999242	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACATATTTATTATTGC	NA	False	NA	17	True	NA	NA	NA	98594407	98636074	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_98594594_98598221_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021815	chr12	+	3561	17	FSM	ENSMUSG00000021012.17	ENSMUST00000110105.10	3514	17	-47	0	-22	0	multi-exon	FALSE	canonical	3	883	junction_12	209.53098667023	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGTGTTTAATAATGTGA	NA	False	NA	NA	False	AATAAA	-16	NA	98713200	98754012	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98740503_98740579_98745366_98745527_98746306_98746540_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021856	chr12	-	2070	6	FSM	ENSMUSG00000021176.7	ENSMUST00000046485.5	2068	6	-2	0	-2	0	multi-exon	TRUE	canonical	3	69	junction_2	7.87400787401181	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCATATTTATGGTATGTA	NA	False	NA	-6	True	ATTAAA	-23	NA	99849703	99683790	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_99685363_99820868_99820960_99821796_99821899_99844615_99844662_99849020_99849117_99849540
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021859	chr12	+	2095	16	FSM	ENSMUSG00000021177.17	ENSMUST00000153627.8	2036	16	-55	-4	-35	4	multi-exon	FALSE	canonical	3	362	junction_1	45.8998910674089	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGGCCTGGAATGAAATT	NA	False	NA	23	True	ATTAAA	-23	NA	99850740	99921482	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021871	chr12	+	1616	11	FSM	ENSMUSG00000021178.10	ENSMUST00000021595.10	1591	11	-21	-4	-21	4	multi-exon	FALSE	canonical	3	1446	junction_1	298.758363899657	723	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAAGAGTTCATTTTCTCT	3952	False	NA	16	True	NA	NA	NA	100076391	100089668	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100086398_100087251_100087407_100089316
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021879	chr12	-	3710	14	NNC	ENSMUSG00000021179.9	novel	3718	14	NA	NA	-1	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	25.4463119704881	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCAGCTTCTTATTTC	8555	False	NA	-3	True	GATAAA	-17	NA	100125908	100091708	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_-_100091991_100092459_100092532_100095553_100095693_100096616_100097543_100098409_100098797_100100611_100100792_100103916_100104038_100106263_100106398_100108151_100108558_100109997_100110449_100112128_100112288_100116075_100116310_100117484_100117594_100125798
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021891	chr12	+	1524	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	92	2499	-2	820	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGTTAAATGCTTTGTA	9257	False	NA	30	True	AATAAA	-19	NA	100165785	100173574	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021923	chr12	-	2081	11	FSM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	39	3243	36	937	multi-exon	FALSE	canonical	3	190	junction_2	46.8375917399689	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTGGGTTGACCCTTGC	NA	False	NA	NA	False	AATAAA	-15	NA	101924466	101888402	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_101889464_101892742_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021938	chr12	+	2960	15	FSM	ENSMUSG00000041781.10	ENSMUST00000047357.10	5732	15	-19	2791	-19	-2791	multi-exon	FALSE	canonical	3	176	junction_8	15.7246718923623	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGTGCAACTTAGCAAAC	NA	False	NA	NA	False	AAAAAG	-26	NA	101942227	101969892	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_101942394_101948172_101948355_101949434_101949595_101949678_101949785_101951479_101951610_101953516_101953633_101954891_101955080_101956047_101956339_101963077_101963179_101963513_101963715_101964795_101964949_101965631_101965858_101966935_101967236_101968886_101969022_101969387
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021949	chr12	-	1951	14	FSM	ENSMUSG00000021190.15	ENSMUST00000021607.9	1990	14	56	-17	56	3	multi-exon	FALSE	canonical	3	371	junction_3	48.4071734133467	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTTTGTGGTTTGTGT	7545	False	NA	0	True	AAAACA	-32	NA	102406016	102360339	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843_102390015_102405889
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021963	chr12	+	1878	8	FSM	ENSMUSG00000021194.7	ENSMUST00000021610.7	1883	8	4	1	4	-1	multi-exon	TRUE	canonical	3	24	junction_1	6.51841974088562	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTTTGATTTATTTTC	NA	False	NA	23	True	AATAAA	-17	NA	102521231	102531286	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_102521430_102522143_102522191_102524724_102524819_102525547_102525617_102527603_102527763_102527925_102528343_102528856_102529333_102530868
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021967	chr12	-	2979	10	FSM	ENSMUSG00000057963.10	ENSMUST00000046518.12	2918	10	-60	-1	-60	1	multi-exon	TRUE	canonical	3	205	junction_5	27.4851250454756	372	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTACGTGGTCACAGTCT	2347	False	NA	0	True	AATAAA	-21	NA	102671249	102534839	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_102536744_102540180_102540344_102545363_102545432_102550545_102550712_102554154_102554196_102554722_102554822_102572347_102572466_102589558_102589685_102641701_102641727_102670980
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000021993	chr12	+	840	2	NNC	ENSMUSG00000046675.8	novel	3367	2	NA	NA	-27	-2158	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTTGCTTGCTTTAAAA	NA	False	NA	3	True	CATAAA	-18	NA	102709993	102711662	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_102710030_102710858
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022013	chr12	-	3128	11	FSM	ENSMUSG00000041702.8	ENSMUST00000045652.8	4035	11	-193	1100	0	-1100	multi-exon	TRUE	canonical	3	58	junction_1	8.02745289615579	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCACACTAGAGCAGAAAGC	NA	False	NA	NA	False	NA	NA	NA	102844730	102751996	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_102752192_102754193_102754644_102756963_102757143_102760004_102760195_102761431_102761576_102774158_102774320_102777378_102777455_102778893_102779103_102803876_102804957_102806358_102806547_102844474
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022015	chr12	+	197	1	Intergenic	novelGene_91	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAGGAATCAATTCTTCT	NA	False	NA	NA	False	NA	NA	NA	102782732	102782929	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr12_+_102782700_102782900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022029	chr12	+	2768	6	NIC	ENSMUSG00000021203.16	novel	424	4	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	32.5047688808888	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCAGTCTGGCTTCTTAA	8434	False	NA	NA	False	ATTAAA	-16	NA	103355214	103372604	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_103355368_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022135	chr12	+	1711	14	FSM	ENSMUSG00000021115.16	ENSMUST00000085026.12	3711	14	-29	2029	-20	-12	multi-exon	FALSE	canonical	3	514	junction_12	169.729126349489	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCGGTCTTTTACACAAGC	NA	False	NA	11	True	AATAAA	-17	NA	105976521	106041656	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022136	chr12	+	1586	15	FSM	ENSMUSG00000021115.16	ENSMUST00000021539.16	1742	15	-53	209	-20	0	multi-exon	FALSE	canonical	3	113	junction_12	308.222032678671	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976521	106041459	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106039877_106039938_106041265
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022150	chr12	-	2792	13	FSM	ENSMUSG00000056770.16	ENSMUST00000071095.14	2755	13	-37	0	-37	0	multi-exon	FALSE	canonical	3	469	junction_9	51.1017503505397	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTTGTTCCTTGTC	NA	False	NA	0	True	ATTAAA	-19	NA	108145610	108072689	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108145411
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022163	chr12	-	2436	11	NIC	ENSMUSG00000056770.16	novel	2755	13	NA	NA	-23	67	combination_of_known_junctions	FALSE	canonical	3	72	junction_5	133.084334164469	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGACTCGAGTCCTCGTT	NA	False	NA	0	True	ATTAAA	-26	NA	108145596	108072857	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108124012_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108145411
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022176	chr12	+	1942	14	FSM	ENSMUSG00000021262.16	ENSMUST00000021689.14	2180	14	238	0	238	0	multi-exon	FALSE	canonical	3	149	junction_6	17.7207129833721	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGCTCTGGCTCACTCT	NA	False	NA	17	True	AATAAA	-17	NA	108521220	108654775	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_108521473_108614573_108614743_108619180_108619359_108639547_108639612_108640665_108640725_108641655_108641886_108642360_108642483_108646087_108646149_108647749_108647814_108649453_108649521_108649606_108649670_108652308_108652376_108652666_108652725_108654287
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022200	chr12	-	2835	10	FSM	ENSMUSG00000021266.17	ENSMUST00000109848.10	2831	10	-3	-1	-3	1	multi-exon	FALSE	canonical	3	1835	junction_9	109.614475929657	450	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACTGTCTGACCAAGCAG	NA	False	NA	-30	True	AATAAA	-20	NA	108860103	108825954	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022237	chr12	+	1910	10	FSM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	-9	-5	-5	0	multi-exon	FALSE	canonical	3	71	junction_3	140.228473183437	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506878	109538160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_109506983_109509582_109509733_109509909_109510626_109510830_109510925_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022238	chr12	+	1775	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-5	3	combination_of_known_junctions	FALSE	canonical	3	187	junction_2	97.0602261485105	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGGGTGTGCTACTAAT	NA	False	NA	NA	False	ACTAAA	-4	NA	109506878	109538163	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022245	chr12	+	1818	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-4	3	combination_of_known_junctions	FALSE	canonical	3	241	junction_3	82.0182906430023	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGGGTGTGCTACTAAT	NA	False	NA	NA	False	ACTAAA	-4	NA	109506879	109538163	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022260	chr12	+	1782	9	NIC	ENSMUSG00000021268.18	novel	1988	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	71	junction_3	166.96140085361	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506881	109538160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109510830_109510925_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022261	chr12	+	2056	9	NNC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	138.267799487082	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506881	109538160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512069_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022262	chr12	+	1826	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	71	junction_3	164.408361633464	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506881	109538160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109510830_109510925_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022263	chr12	+	1656	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	48	junction_3	144.53415668616	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506881	109538160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022267	chr12	+	1863	10	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	71	junction_3	145.012983667321	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506881	109538160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109510830_109510925_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022269	chr12	+	2150	10	NNC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	154.00921889995	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506881	109538160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_109506983_109509582_109509733_109509909_109510626_109510830_109510925_109512069_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022273	chr12	+	1732	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	128.442792792777	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506881	109538160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022278	chr12	+	1840	9	NNC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_6	141.01418368377	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506881	109538160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109516015_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022283	chr12	+	2012	9	NNC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	145.37231295883	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506881	109538160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512069_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022285	chr12	+	1619	7	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_3	155.498570911618	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506881	109538160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022287	chr12	+	1700	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	48	junction_3	135.363757848161	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506881	109538160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022295	chr12	+	1543	3	FSM	ENSMUSG00000021268.18	ENSMUST00000129245.8	1498	3	-2	-43	-2	43	multi-exon	FALSE	canonical	3	187	junction_2	159.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGGTGGGGGGAGGTGGG	NA	False	NA	NA	False	NA	NA	NA	109506881	109511245	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_109506983_109509582_109509689_109509909
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022296	chr12	+	1904	9	NNC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	141.848015054847	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506881	109538160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515634_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022325	chr12	+	2375	11	FSM	ENSMUSG00000097451.12	ENSMUST00000181253.10	2368	11	0	-7	0	0	multi-exon	FALSE	canonical	3	396	junction_3	76.4947056991528	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGAAGTACAATTATTGA	2865	False	NA	NA	False	ACTAAA	-5	NA	109612563	109628150	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022326	chr12	+	3230	10	NIC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	549	junction_7	35.1002092779804	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGAAGTACAATTATTGA	2865	False	NA	NA	False	ACTAAA	-5	NA	109612563	109628150	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_109613186_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022347	chr12	+	2375	12	NNC	ENSMUSG00000017843.15	novel	956	8	NA	NA	-1681	-1	at_least_one_novel_splicesite	TRUE	canonical	3	32	junction_1	278.776903604784	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCAGTGTGTATTTTCCT	3239	False	NA	13	True	AATAAA	-15	NA	110450490	110538121	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_110450715_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022350	chr12	+	2391	12	FSM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	-22	-2	-22	2	multi-exon	FALSE	canonical	3	738	junction_1	90.3704039902189	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTATTTTCCTATG	4898	False	NA	16	True	AATAAA	-18	NA	110452149	110538124	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022377	chr12	-	2907	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	-47	421	-47	2	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAATGTGTCTTTTCTTT	NA	False	NA	-3	True	GATAAA	-23	NA	110662876	110657459	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022384	chr12	-	2773	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	4138.47648779113	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGTGGAATGTGTCTTT	NA	False	NA	-8	True	GATAAA	-18	NA	110662743	110657464	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659741_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022391	chr12	+	2464	3	FSM	ENSMUSG00000037957.15	ENSMUST00000095410.8	2384	3	-80	0	-32	0	multi-exon	FALSE	canonical	3	142	junction_2	4	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTTGTAGAACTCTGAT	5266	False	NA	19	True	AATAAA	-18	NA	110704345	110761462	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_110704712_110745729_110745913_110759547
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022445	chr12	-	557	5	NNC	ENSMUSG00000021276.11	novel	445	4	NA	NA	-1	785	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	173.897060067156	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAGACCTTACGGAGGCA	3369	False	NA	NA	False	NA	NA	NA	110855559	110842609	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_-_110842678_110843274_110843405_110846118_110846249_110850323_110850493_110855499
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022460	chr12	+	528	1	FSM	ENSMUSG00000096942.2	ENSMUST00000181233.2	438	1	-36	-54	-36	54	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACCCAAGGAAAATCTAG	NA	False	NA	NA	False	AATAAA	-31	NA	110864511	110865039	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_110864500_110865000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022485	chr12	+	3765	12	FSM	ENSMUSG00000021282.18	ENSMUST00000166123.9	4050	12	149	136	-32	28	multi-exon	FALSE	canonical	3	1736	junction_1	190.905151474506	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTTTTCATTTTACTGT	NA	False	NA	NA	False	ATTAAA	-43	NA	111504598	111513050	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_111504674_111504788_111504983_111505841_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022506	chr12	+	3536	1	FSM	ENSMUSG00000064493.3	ENSMUST00000082559.3	127	1	-2725	-684	-2725	684	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAAGGGCAAGGACAAGG	NA	False	NA	NA	False	NA	NA	NA	111504649	111508185	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_111504600_111508200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022511	chr12	+	3429	18	FSM	ENSMUSG00000007411.17	ENSMUST00000221459.2	2807	18	-559	-63	-31	2	multi-exon	FALSE	canonical	3	315	junction_16	68.4977205187368	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCACTGTCTCCTACTG	705	False	NA	NA	False	ATTAAA	-23	NA	111540925	111622657	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022518	chr12	+	3351	16	FSM	ENSMUSG00000007411.17	ENSMUST00000075281.8	3321	16	-25	-5	-25	2	multi-exon	FALSE	canonical	3	91	junction_15	105.235101875119	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCACTGTCTCCTACTG	711	False	NA	NA	False	ATTAAA	-23	NA	111540931	111622657	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111621703
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022544	chr12	-	1682	6	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	1	intron_retention	FALSE	canonical	3	7551	junction_4	349.982056682911	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGAGTGTTGCTTCTCCT	NA	False	NA	-7	True	AATAAA	-22	NA	111638734	111635793	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111638014_111638199_111638408_111638663
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022545	chr12	-	1512	7	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	1	intron_retention	FALSE	canonical	3	7551	junction_5	335.592345297419	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGAGTGTTGCTTCTCCT	NA	False	NA	-7	True	AATAAA	-22	NA	111638734	111635793	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111638014_111638199_111638408_111638663
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022557	chr12	-	1457	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_7	2719.30351977359	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638734	111635794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638640
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022558	chr12	-	1604	7	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	0	intron_retention	FALSE	canonical	3	7551	junction_5	321.637477086652	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638734	111635794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637782_111637858_111638014_111638199_111638408_111638663
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022560	chr12	-	2415	4	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	0	intron_retention	FALSE	canonical	3	7551	junction_2	380.13886351642	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638734	111635794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_-_111636176_111636258_111638014_111638199_111638408_111638663
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022561	chr12	-	1434	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	38	0	-17	0	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638734	111635794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022562	chr12	-	2268	5	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	0	intron_retention	FALSE	canonical	3	7551	junction_3	376.663643055711	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638734	111635794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_-_111636176_111636258_111636449_111636595_111638014_111638199_111638408_111638663
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022563	chr12	-	2857	2	FSM	ENSMUSG00000001270.10	ENSMUST00000222705.2	2839	2	-18	0	-17	0	multi-exon	FALSE	canonical	3	8476	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638734	111635794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_111636176_111636258
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022565	chr12	-	2191	6	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	0	intron_retention	FALSE	canonical	3	7551	junction_4	341.990994033469	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638734	111635794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_-_111636176_111636258_111636449_111636595_111637782_111637858_111638014_111638199_111638408_111638663
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022570	chr12	-	2710	3	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	38	0	-17	0	intron_retention	FALSE	canonical	3	7560	junction_2	458	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638734	111635794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr12_-_111636176_111636258_111636449_111636595
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022590	chr12	-	2940	1	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638734	111635794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_-_111635800_111638700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022624	chr12	-	2109	2	FSM	ENSMUSG00000049792.7	ENSMUST00000054636.7	2139	2	30	0	30	0	multi-exon	FALSE	canonical	3	159	junction_1	0	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCCCCCTGTGCTGTTC	NA	False	NA	NA	False	CATAAA	-20	NA	111679661	111675921	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_111677847_111679477
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022689	chr12	-	2468	8	FSM	ENSMUSG00000021287.13	ENSMUST00000021715.6	2422	8	-45	-1	-13	0	multi-exon	FALSE	canonical	3	57	junction_7	12.8809303758284	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACACTTGCAAATTATTT	NA	False	NA	NA	False	AATAAA	-23	NA	111780320	111769625	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776399_111777291_111777430_111778494_111778654_111780258
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022712	chr12	+	1313	8	NNC	ENSMUSG00000021286.9	novel	1265	8	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_5	314.41348052317	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCAGGCTCTGGCCTCA	NA	False	NA	16	True	ATTAAA	-17	NA	111780652	111794820	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792009_111792067_111793979_111794120_111794251
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022735	chr12	+	1804	13	FSM	ENSMUSG00000011148.15	ENSMUST00000021726.8	1777	13	-8	-19	-8	-2	multi-exon	FALSE	canonical	3	62	junction_2	10.1005362893924	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGTCTTGACTTCGTCC	NA	False	NA	NA	False	AATAAA	-38	NA	112586470	112607792	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_112586745_112594734_112594838_112598687_112598751_112599128_112599180_112599502_112599570_112600577_112600686_112600813_112600896_112601034_112601162_112601864_112602020_112602827_112602953_112604618_112604717_112606045_112606196_112607391
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022742	chr12	+	560	3	FSM	ENSMUSG00000064326.14	ENSMUST00000109755.5	333	3	-119	-108	-119	0	multi-exon	FALSE	canonical	3	90	junction_1	805	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7024	False	NA	17	True	AATAAA	-17	NA	112611281	112615579	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_112611519_112614258_112614416_112615413
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022755	chr12	-	2580	14	NNC	ENSMUSG00000001729.15	novel	2690	14	NA	NA	-475	-5	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_13	94.3623257487333	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGTTTGCTTTCTGG	NA	False	NA	-5	True	AATAAA	-14	NA	112638473	112620259	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr12_-_112621212_112621560_112621664_112622935_112623024_112623210_112623426_112623501_112623631_112623701_112623828_112624100_112624170_112624831_112624898_112624979_112625112_112625562_112625711_112625983_112626096_112628613_112628743_112637949_112638089_112638301
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022775	chr12	-	2100	2	FSM	ENSMUSG00000047832.10	ENSMUST00000220899.2	1994	2	-98	-8	-98	0	multi-exon	FALSE	canonical	3	463	junction_1	0	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGGAGCCTTTTTTT	9514	False	NA	0	True	ATTAAA	-19	NA	112793141	112783848	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_-_112785733_112792925
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022779	chr12	-	1882	1	NIC	ENSMUSG00000047832.10	novel	2425	2	NA	NA	7261	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTTAGGAGCCTTTT	9987	False	NA	-3	True	ATTAAA	-16	NA	112785733	112783851	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_-_112783900_112785700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022797	chr12	+	1977	5	FSM	ENSMUSG00000002803.15	ENSMUST00000165079.8	1975	5	5	-7	0	7	multi-exon	FALSE	canonical	3	10	junction_1	16.3152535990097	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCAAATGTAGATAAGTG	NA	False	NA	NA	False	AATAAA	-16	NA	112940106	112942557	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_112940133_112940295_112940603_112940678_112940770_112940872_112940992_112941123
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022801	chr12	+	2143	4	FSM	ENSMUSG00000002803.15	ENSMUST00000221104.2	2085	4	-63	5	0	-5	multi-exon	FALSE	canonical	3	44	junction_3	3.55902608401044	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATGTAGATAAGTGACT	NA	False	NA	NA	False	AATAAA	-19	NA	112940106	112942560	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_112940603_112940678_112940770_112940872_112940992_112941123
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022819	chr12	+	1185	7	FSM	ENSMUSG00000006356.11	ENSMUST00000084882.9	1439	7	256	-2	-80	2	multi-exon	FALSE	canonical	3	743	junction_5	14.1745076340121	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGTGTCGTGTGTGTGTG	5878	False	NA	32	True	AATAAA	-25	NA	113104111	113109128	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_113104235_113107078_113107232_113107634_113107776_113107848_113107918_113108018_113108114_113108429_113108488_113108582
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022829	chr12	+	3351	8	FSM	ENSMUSG00000037466.14	ENSMUST00000049271.13	2441	8	-6	-904	-6	-600	multi-exon	FALSE	canonical	3	152	junction_3	28.4088230043027	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCGGAACGCTTGAGTG	NA	False	NA	NA	False	TTTAAA	-26	NA	113120034	113129068	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022872	chr12	+	2594	10	NIC	ENSMUSG00000021175.16	novel	2957	10	NA	NA	-3	6	combination_of_known_junctions	FALSE	canonical	3	109	junction_2	33.9643967547428	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACCTGTCTGTGGCATC	NA	False	NA	20	True	AATAAA	-20	NA	117807615	117842447	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr12_+_117807693_117828764_117828900_117833743_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022882	chr13	+	2676	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	-33	1660	-33	391	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	1249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGTAGTGCAGCATTAA	NA	False	NA	11	True	AATAAA	-20	NA	3588029	3616211	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022898	chr13	+	2158	11	NIC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	39	junction_3	580.528517818031	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	36	True	AATAAA	-19	NA	3588127	3615821	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604441_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022911	chr13	+	2392	6	FSM	ENSMUSG00000033781.8	ENSMUST00000042288.8	4453	6	13	2048	13	1288	multi-exon	FALSE	canonical	3	52	junction_4	6.61513416341649	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCCCTGTGTCTTATT	NA	False	NA	6	True	AATAAA	-15	NA	3684044	3701774	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_3684176_3692064_3692253_3693474_3693626_3694915_3695051_3699318_3699511_3700179
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022918	chr13	+	1689	4	FSM	ENSMUSG00000000078.8	ENSMUST00000000080.8	4225	4	-33	2569	-33	550	multi-exon	FALSE	canonical	3	176	junction_1	9.7410927974683	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAAAAACATGGAGGGTG	NA	False	NA	NA	False	NA	NA	NA	5911447	5917824	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_5911842_5914766_5915344_5916637_5916762_5917230
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022922	chr13	+	3583	27	FSM	ENSMUSG00000021193.11	ENSMUST00000222485.2	3906	27	-14	337	-12	136	multi-exon	TRUE	canonical	3	407	junction_1	134.848435629472	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTGCTGCTCTTGCAAG	NA	False	NA	NA	False	NA	NA	NA	6598172	6630214	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000022926	chr13	+	3576	27	NIC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	-8	136	combination_of_known_junctions	FALSE	canonical	3	577	junction_1	112.248614598533	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTGCTGCTCTTGCAAG	NA	False	NA	NA	False	NA	NA	NA	6598176	6630214	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023000	chr13	+	207	1	Intergenic	novelGene_92	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTGTCAGGAAACATGAC	NA	False	NA	NA	False	AAGAAA	-1	NA	9303895	9304102	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_9303900_9304100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023014	chr13	+	6782	45	FSM	ENSMUSG00000050244.10	ENSMUST00000059270.10	6780	45	2	-4	2	4	multi-exon	TRUE	canonical	3	181	junction_14	60.7064258923889	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTATTTGTCTTTATCCT	1716	False	NA	9	True	AGTAAA	-23	NA	12410253	12453778	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_12410352_12410620_12410795_12411302_12411520_12413783_12413926_12415930_12416033_12416330_12416472_12417594_12417807_12418025_12418160_12419768_12419872_12420903_12421015_12421405_12421524_12422397_12422506_12423534_12423631_12424089_12424179_12425276_12425489_12426100_12426223_12426925_12427118_12428105_12428290_12428392_12428530_12429253_12429447_12430297_12430468_12430831_12430991_12432340_12432584_12432978_12433111_12435922_12436027_12436158_12436303_12436921_12437041_12437121_12437244_12438514_12438644_12439500_12439732_12441034_12441162_12441642_12441804_12444647_12444695_12445021_12445146_12445791_12445933_12446560_12446854_12447509_12447661_12448492_12448652_12448797_12448933_12449067_12449173_12449254_12449424_12449927_12450083_12450550_12450710_12452714_12452824_12453469
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023042	chr13	+	6074	20	FSM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	23	-6	23	6	multi-exon	TRUE	canonical	0	0	junction_7	184.261632008595	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTTTGCTGTTTTGTT	NA	False	NA	18	True	ATTAAA	-33	NA	13612158	13686860	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_13612512_13638306_13638607_13639894_13640122_13642815_13643193_13647364_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023053	chr13	+	3816	12	FSM	ENSMUSG00000039242.11	ENSMUST00000099747.5	3892	12	76	0	-76	0	multi-exon	TRUE	canonical	3	178	junction_5	19.409889274617	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	14129129	14173659	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023065	chr13	-	1844	17	FSM	ENSMUSG00000039233.13	ENSMUST00000039894.13	1844	17	5	-5	5	2	multi-exon	FALSE	canonical	3	97	junction_4	17.0705109399221	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTGCCCTTTCTGTTT	NA	False	NA	0	True	AATAAA	-19	NA	14214218	14172531	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023106	chr13	+	1992	2	FSM	ENSMUSG00000039182.7	ENSMUST00000038690.6	2914	2	29	893	0	0	multi-exon	FALSE	canonical	3	129	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCCTGTTTTTCATTGT	NA	False	NA	10	True	ATTAAA	-17	NA	14804861	14812788	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_14804950_14810884
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023138	chr13	+	2692	12	ISM	ENSMUSG00000041236.9	ENSMUST00000072961.6	3199	29	9	37412	9	1250	intron_retention	FALSE	canonical	3	433	junction_10	47.5288516118072	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTTATAGTAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	18901468	19013569	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023139	chr13	+	3187	29	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	9	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_21	111.592158994168	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTATTGTGTTGCAAGC	NA	False	NA	23	True	AATAAA	-22	NA	18901468	19050981	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030105_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023165	chr13	+	3214	21	FSM	ENSMUSG00000021314.14	ENSMUST00000003345.10	3367	21	149	4	3	-4	multi-exon	FALSE	canonical	3	40	junction_16	8.61669890387264	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGGGTTCTTTTTCAAG	NA	False	NA	15	True	AATAAA	-20	NA	19132523	19335087	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305490_19309195_19309319_19321705_19321913_19323341_19323603_19326134_19326237_19333905
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023171	chr13	+	820	1	ISM	ENSMUSG00000021314.14	ENSMUST00000003345.10	3367	21	201891	6	30307	3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACATGGGTTCTTTTTCA	NA	False	NA	13	True	AATAAA	-18	NA	19334265	19335085	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr13_+_19334300_19335100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023181	chr13	-	1417	10	FSM	ENSMUSG00000003062.14	ENSMUST00000197565.3	1391	10	-29	3	-4	0	multi-exon	FALSE	canonical	3	23	junction_9	324.011659598163	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGATTGTGTGTTGTCTG	NA	False	NA	-3	True	AATAAA	-16	NA	19579933	19541848	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19575142_19575268_19579873
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023199	chr13	+	2516	8	FSM	ENSMUSG00000021326.14	ENSMUST00000021761.13	4204	8	-27	1715	-27	145	multi-exon	TRUE	canonical	3	719	junction_6	36.2209771220141	1212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCTTTTGTCAGTGTTTG	902	False	NA	NA	False	NA	NA	NA	21364073	21377178	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_21365085_21366153_21366250_21367901_21368133_21372210_21372234_21374024_21374141_21374261_21374295_21375389_21375417_21376199
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023209	chr13	+	2078	8	FSM	ENSMUSG00000021326.14	ENSMUST00000223065.2	2046	8	-33	1	-33	-1	multi-exon	FALSE	canonical	3	28	junction_5	261.483054432026	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACGTTTTGTTTTTGTTA	1189	False	NA	20	True	AATAAA	-22	NA	21364360	21377032	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_21365085_21366153_21366250_21367901_21368133_21372210_21372234_21374024_21374141_21374266_21374295_21375389_21375417_21376199
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023210	chr13	+	2085	7	NNC	ENSMUSG00000021326.14	novel	4204	8	NA	NA	-33	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	295.200167494683	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACGTTTTGTTTTTGTTA	1189	False	NA	20	True	AATAAA	-22	NA	21364360	21377032	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_+_21365085_21366153_21366250_21367901_21368133_21372210_21372234_21374024_21374141_21374261_21374295_21376170
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023245	chr13	+	1929	1	FSM	ENSMUSG00000078139.4	ENSMUST00000104942.2	1924	1	-1	-4	-1	4	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGAATTTGAAGTAGATCA	NA	False	NA	NA	False	AAAAAG	-4	NA	21679391	21681320	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_21679400_21681300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023250	chr13	+	451	1	FSM	ENSMUSG00000114279.2	ENSMUST00000224651.2	524	1	32	41	32	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTCTTTGAAAAGGGCT	9053	False	NA	NA	False	NA	NA	NA	21906245	21906696	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_21906200_21906700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023251	chr13	+	447	2	Fusion	ENSMUSG00000114279.2_ENSMUSG00000069308.8	novel	621	2	NA	NA	34	-35	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACATTCTCAAAACAGAGAT	9055	False	NA	NA	False	NA	NA	NA	21906247	21972111	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr13_+_21906400_21971816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023262	chr13	+	525	1	FSM	ENSMUSG00000094248.2	ENSMUST00000091745.6	480	1	-92	47	-92	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	3175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTTTTCAGAGCCATCC	NA	False	NA	NA	False	AAGAAA	-10	NA	21994542	21995067	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_21994500_21995100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023267	chr13	-	422	1	FSM	ENSMUSG00000094777.3	ENSMUST00000081342.7	482	1	0	60	0	-60	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGACCAGCCGTTCACTCA	NA	False	NA	NA	False	NA	NA	NA	22017677	22017255	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_22017300_22017700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023278	chr13	+	483	1	FSM	ENSMUSG00000062727.5	ENSMUST00000110455.4	476	1	-31	24	-31	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCAGTATTAGAGCTGCA	NA	False	NA	15	True	ACTAAA	-1	NA	22220008	22220491	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_22220000_22220500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023281	chr13	+	461	1	FSM	ENSMUSG00000069300.4	ENSMUST00000110452.2	463	1	-16	18	-16	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTTTTAAAGAGAGCTGC	NA	False	NA	NA	False	NA	NA	NA	22227367	22227828	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_22227400_22227800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023284	chr13	-	3194	5	FSM	ENSMUSG00000046351.12	ENSMUST00000125328.2	815	5	-14	-2365	0	-1725	multi-exon	FALSE	canonical	3	71	junction_1	23.1124966197942	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTATTTATTATTATACA	9006	False	NA	NA	False	ATTAAA	-13	NA	23553378	23538997	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553304
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023296	chr13	+	510	1	FSM	ENSMUSG00000052565.8	ENSMUST00000045301.9	7425	1	1767	5148	1767	-5148	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACGGCCAAGAAGACTCCGA	8	False	NA	NA	False	NA	NA	NA	23739202	23739712	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_23739200_23739700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023299	chr13	-	489	1	FSM	ENSMUSG00000069273.3	ENSMUST00000105107.2	836	1	-17	364	-17	-364	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTATCCACCAAAGATGCT	1	True	NA	NA	False	NA	NA	NA	23746560	23746071	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_23746100_23746600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023305	chr13	+	380	1	FSM	ENSMUSG00000061482.8	ENSMUST00000102968.3	1138	1	-33	791	-33	-791	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGGCCCTTTTCAGGGC	1880	False	NA	-20	True	NA	NA	NA	23765547	23765927	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_23765500_23765900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023308	chr13	-	719	1	FSM	ENSMUSG00000051627.4	ENSMUST00000062045.4	1930	1	-2	1213	-2	-1213	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATTTTCTTTGGCCAAC	NA	False	NA	NA	False	AAGAAA	-3	NA	23806543	23805824	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_23805800_23806500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023311	chr13	+	735	2	FSM	ENSMUSG00000018102.6	ENSMUST00000018246.6	1156	2	1	420	1	-420	multi-exon	FALSE	canonical	3	53	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGTCATGTTATATCACGT	184	False	NA	NA	False	NA	NA	NA	23868182	23876471	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_23868605_23876158
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023315	chr13	-	354	1	FSM	ENSMUSG00000060678.6	ENSMUST00000102967.3	820	1	-4	470	-4	-470	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTTTTCAGGGCCACCC	NA	False	NA	NA	False	NA	NA	NA	23882441	23882087	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_23882100_23882400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023336	chr13	+	2314	1	Genic_Genomic	ENSMUSG00000019132.12	novel	NA	NA	NA	NA	-521	-9211	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTCTAGCTGACCAGTT	NA	False	NA	NA	False	AAGAAA	-43	NA	24985118	24987432	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr13_+_24985100_24987400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023349	chr13	+	1987	7	FSM	ENSMUSG00000035958.4	ENSMUST00000038039.3	1957	7	-30	0	-30	0	multi-exon	FALSE	canonical	3	768	junction_5	64.0791611125559	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGACTTTTTTCTTCATG	NA	False	NA	21	True	AATAAA	-21	NA	25015631	25026136	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_25015913_25015992_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023356	chr13	+	1869	6	NIC	ENSMUSG00000035958.4	novel	1957	7	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	322.122585361536	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTACGACTTTTTTCTTCA	NA	False	NA	19	True	AATAAA	-19	NA	25015661	25026134	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_+_25015913_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023367	chr13	+	717	1	FSM	ENSMUSG00000060198.8	ENSMUST00000180940.2	627	1	-41	-49	-41	49	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTCGTTGTTGGAATCA	NA	False	NA	NA	False	AATAAA	-28	NA	26676495	26677212	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_26676500_26677200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023368	chr13	-	375	1	FSM	ENSMUSG00000076431.5	ENSMUST00000067230.6	4795	1	16	4404	16	-4404	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTGGGGGAAAGACTTGC	NA	False	NA	NA	False	NA	NA	NA	29137680	29137305	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_29137300_29137700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023371	chr13	-	2629	16	FSM	ENSMUSG00000006191.18	ENSMUST00000006353.14	2629	16	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	17.6728291138937	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTTTATTGGACTTT	NA	False	NA	NA	False	AATAAA	-23	NA	30039657	29509283	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_29510212_29538612_29538778_29541482_29541567_29627990_29628054_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023414	chr13	-	1305	7	FSM	ENSMUSG00000044734.17	ENSMUST00000076352.8	1918	7	-2	615	-2	-615	multi-exon	FALSE	canonical	3	136	junction_6	10.85382677011	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCTTTTGTATGTTCAA	4867	False	NA	2	True	AATAAA	-20	NA	33035170	33026689	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_33027206_33029291_33029460_33029653_33029797_33031372_33031491_33032601_33032740_33034221_33034398_33035124
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023424	chr13	-	1553	7	FSM	ENSMUSG00000052180.16	ENSMUST00000110273.9	1325	7	-222	-6	-222	6	multi-exon	FALSE	canonical	3	772	junction_6	71.5830908028488	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCGAGTGTTTTCTAGGA	NA	False	NA	-1	True	AATAAA	-25	NA	34089375	34063792	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089090
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023426	chr13	-	1352	7	FSM	ENSMUSG00000052180.16	ENSMUST00000172184.2	1327	7	-18	-7	-18	6	multi-exon	FALSE	canonical	3	68	junction_6	317.289431486984	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCGAGTGTTTTCTAGGA	NA	False	NA	-1	True	AATAAA	-25	NA	34089709	34063792	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089625
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023465	chr13	-	1611	4	FSM	ENSMUSG00000058672.8	ENSMUST00000056427.10	1610	4	-1	0	-1	0	multi-exon	FALSE	canonical	3	289	junction_2	19.2006944318862	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCCTTTTCTCTTCAACA	NA	False	NA	NA	False	AATAAA	-22	NA	34261991	34258256	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_34259512_34260160_34260272_34260531_34260641_34261855
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023514	chr13	+	3190	7	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2859	1	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_1	63.2334739060114	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGAGTGTTTCTCTGCGT	NA	False	NA	19	True	AATAAA	-20	NA	35922436	36058047	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_+_35922622_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023518	chr13	+	3262	8	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2856	1	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_1	86.1488981534948	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGAGTGTTTCTCTGCGT	NA	False	NA	19	True	AATAAA	-20	NA	35922439	36058047	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_+_35922622_35974083_35974159_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023534	chr13	-	1172	8	FSM	ENSMUSG00000021418.16	ENSMUST00000171686.9	4380	8	-22	3230	-22	2	multi-exon	FALSE	canonical	3	464	junction_5	45.6195446836425	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGCTTGTTTGTTGTCAT	NA	False	NA	-4	True	CATAAA	-25	NA	36090364	36080684	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36090186
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023588	chr13	-	2635	10	NNC	ENSMUSG00000038991.18	novel	2843	10	NA	NA	18	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	356.324481059706	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGTCTTTGCTTAAATG	NA	False	NA	NA	False	AATAAA	-24	NA	38712448	38684241	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_-_38685678_38687402_38687537_38688699_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043_38697141_38702958_38703065_38707304_38707455_38712163
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023592	chr13	-	2650	10	FSM	ENSMUSG00000038991.18	ENSMUST00000035988.16	2843	10	6	187	6	7	multi-exon	FALSE	canonical	3	973	junction_6	103.236992125933	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGTCTTTGCTTAAATG	NA	False	NA	NA	False	AATAAA	-24	NA	38712460	38684241	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_38685685_38687406_38687537_38688699_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043_38697141_38702958_38703065_38707304_38707455_38712163
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023594	chr13	-	2226	7	ISM	ENSMUSG00000038991.18	ENSMUST00000160653.2	2586	10	14621	-7	-7351	7	3prime_fragment	FALSE	canonical	3	973	junction_6	65.3743493700362	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGTCTTTGCTTAAATG	NA	False	NA	NA	False	AATAAA	-24	NA	38697269	38684241	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr13_-_38685685_38687406_38687537_38688699_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023596	chr13	-	2635	10	NNC	ENSMUSG00000038991.18	novel	2843	10	NA	NA	18	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	350.627092542335	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGTCTTTGCTTAAATG	NA	False	NA	NA	False	AATAAA	-24	NA	38712448	38684241	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_-_38685685_38687406_38687537_38688702_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043_38697141_38702958_38703065_38707304_38707455_38712163
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023614	chr13	+	4319	3	FSM	ENSMUSG00000021360.17	ENSMUST00000069958.15	3929	3	-389	-1	-389	0	multi-exon	FALSE	canonical	3	51	junction_1	65	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATAGTGGATATTTATTT	NA	False	NA	20	True	AATAAA	-25	NA	41040279	41114368	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_41041762_41107051_41107148_41111627
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023641	chr13	-	3726	8	FSM	ENSMUSG00000021364.17	ENSMUST00000021793.15	3840	8	0	114	0	4	multi-exon	FALSE	canonical	3	52	junction_4	7.79848232226067	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTGCAACTTTTCTTAT	7559	False	NA	NA	False	AATAAA	-19	NA	41373881	41335970	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_41338884_41340328_41340464_41340904_41341030_41343421_41343594_41345363_41345442_41348122_41348311_41350610_41350675_41373830
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023652	chr13	-	1245	8	FSM	ENSMUSG00000021368.16	ENSMUST00000179852.9	1246	8	1	0	0	0	multi-exon	FALSE	canonical	3	148	junction_7	48.9393627307283	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCGTGGCCATGATG	NA	False	NA	-17	True	AGTAAA	-16	NA	43324959	43305215	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324784
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023662	chr13	+	1497	9	NIC	ENSMUSG00000054021.7	novel	1579	9	NA	NA	-22	3	combination_of_known_junctions	FALSE	canonical	3	172	junction_8	20.7710736361893	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTTTTGTACTTTTTT	NA	False	NA	13	True	ATTAAA	-25	NA	43519081	43548682	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_+_43519217_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023672	chr13	+	934	8	NNC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	-8	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	500.810159967358	26	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGTCACATTTCTTTT	NA	False	NA	29	True	TATAAA	-29	NA	43551857	43555468	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_+_43552135_43552210_43552272_43552991_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023685	chr13	+	212	1	Intergenic	novelGene_93	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAATTCTCAGGCTGGAG	NA	False	NA	NA	False	AAGAAA	-7	NA	44539347	44539559	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_44539300_44539600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023686	chr13	+	207	1	Intergenic	novelGene_94	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATCAGATCACTGTGCCC	7764	False	NA	NA	False	NA	NA	NA	44774385	44774592	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_44774400_44774600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023712	chr13	+	3717	5	FSM	ENSMUSG00000069237.9	ENSMUST00000099547.4	3664	5	-45	-8	-45	8	multi-exon	FALSE	canonical	3	172	junction_4	10.8972473588517	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTTGTCTGTGCCTATT	NA	False	NA	15	True	AATAAA	-15	NA	46822952	46831540	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_46823732_46824684_46824806_46827021_46827146_46827728_46827869_46828987
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023741	chr13	-	2597	11	FSM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	-41	0	-30	0	multi-exon	FALSE	canonical	3	1333	junction_10	113.482333426838	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	-15	True	AATAAA	-20	NA	47259707	47238257	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023750	chr13	-	926	7	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	343	3801	-17	12	internal_fragment	FALSE	canonical	3	1443	junction_4	96.5102182269951	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAACAGAAAGCTACTGC	NA	False	NA	-89	True	AAAAAG	-19	NA	47259323	47242058	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr13_-_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023758	chr13	+	2239	3	FSM	ENSMUSG00000021379.3	ENSMUST00000021810.3	3849	3	-115	1725	-115	-1725	multi-exon	FALSE	canonical	3	109	junction_1	7	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACTGGAAAATCCTTCAA	NA	False	NA	NA	False	NA	NA	NA	48414588	48417777	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_48415415_48415760_48415824_48416427
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023774	chr13	+	1209	4	FSM	ENSMUSG00000037966.16	ENSMUST00000049022.15	1187	4	-4	-18	-4	18	multi-exon	FALSE	canonical	3	352	junction_2	21.013223349966	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTATACTCTTGGGACA	NA	False	NA	31	True	AATAAA	-33	NA	49340956	49349738	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_49341114_49347211_49347441_49348369_49348534_49349079
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023778	chr13	-	835	6	FSM	ENSMUSG00000037960.12	ENSMUST00000048946.7	804	6	-24	-7	-13	6	multi-exon	FALSE	canonical	3	362	junction_5	10.4115320678563	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGAATGTCTTCTCCTTG	NA	False	NA	0	True	ATTAAA	-20	NA	49369526	49356419	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_49356712_49357193_49357266_49357404_49357465_49358667_49358822_49361479_49361623_49369412
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023808	chr13	+	4407	34	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	2	43	junction_17	321.82444210084	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	30	True	ATTAAA	-31	NA	49835598	49887743	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865317_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023837	chr13	+	4481	6	FSM	ENSMUSG00000021395.12	ENSMUST00000095797.6	4434	6	-45	-2	-45	2	multi-exon	FALSE	canonical	3	703	junction_1	64.2227374066226	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGCTGTGAACTTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	51254870	51306584	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_51255027_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023859	chr13	+	2275	1	NIC	ENSMUSG00000062248.6	novel	692	3	NA	NA	93	-3061	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGGGGAAAAAAACCCCAGAA	NA	False	NA	NA	False	NA	NA	NA	51799360	51801635	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_+_51799400_51801600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023863	chr13	+	3326	17	FSM	ENSMUSG00000035139.15	ENSMUST00000040117.15	3328	17	2	0	2	0	multi-exon	FALSE	canonical	3	118	junction_13	19.2596363867546	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGCTATTGTGATCTT	5496	False	NA	8	True	AATAAA	-20	NA	51805734	51838080	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_51805857_51806642_51806792_51808421_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023880	chr13	+	1082	4	FSM	ENSMUSG00000021453.3	ENSMUST00000021903.3	1071	4	-4	-7	-4	7	multi-exon	FALSE	canonical	3	52	junction_3	4.02768199119819	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATGCCTTTTTATTGAG	NA	False	NA	NA	False	AATAAA	-15	NA	52000709	52002511	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_52000869_52001387_52001490_52001591_52001806_52001904
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023909	chr13	-	2047	2	FSM	ENSMUSG00000056749.8	ENSMUST00000071065.8	2026	2	-21	0	-21	0	multi-exon	FALSE	canonical	3	64	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCGGCTCTGTTCCACTT	NA	False	NA	1	True	AATAAA	-19	NA	53135130	53121244	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_53123058_53134896
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023932	chr13	-	2599	15	FSM	ENSMUSG00000021468.9	ENSMUST00000021920.8	2606	15	7	0	7	0	multi-exon	FALSE	canonical	3	146	junction_11	13.0690864412232	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCTGTTTGGATAGCAG	1836	False	NA	-18	True	AATAAA	-27	NA	53531426	53486783	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_53488014_53489376_53489451_53491643_53491762_53496207_53496263_53497163_53497261_53497814_53497911_53498836_53498945_53505636_53505727_53508186_53508317_53512796_53512930_53521347_53521421_53521901_53521996_53527364_53527460_53527997_53528106_53531328
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023941	chr13	+	1262	11	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	-45	-1559	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	264.208800004845	73	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTCTGGTAGATTTTAAT	NA	False	NA	NA	False	NA	NA	NA	54225842	54260802	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_+_54225945_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023946	chr13	+	1315	12	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	-25	-1559	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_6	341.21576509169	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTCTGGTAGATTTTAAT	NA	False	NA	NA	False	NA	NA	NA	54225862	54260802	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247571_54247638_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023958	chr13	-	2360	6	FSM	ENSMUSG00000025872.6	ENSMUST00000026990.6	2335	6	-22	-3	-22	3	multi-exon	FALSE	canonical	3	501	junction_3	36.0699320764539	349	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTCTAAAGTTACTATCT	NA	False	NA	0	True	AATAAA	-18	NA	54616684	54606646	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615638_54615796_54616353
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023967	chr13	-	2674	9	FSM	ENSMUSG00000025871.19	ENSMUST00000026989.15	2727	9	53	0	-26	0	multi-exon	FALSE	canonical	3	520	junction_7	24.8696602308918	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTCTTGTCCATTCTG	NA	False	NA	NA	False	AATAAA	-26	NA	54713195	54699030	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023976	chr13	-	2555	8	FSM	ENSMUSG00000025871.19	ENSMUST00000153065.8	2502	8	-53	0	0	0	multi-exon	FALSE	canonical	3	41	junction_6	177.014469603419	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTCTGTCTTGTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	54713169	54699035	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54712327_54712435_54712994
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023994	chr13	-	1201	5	FSM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	-3	558	-3	-207	multi-exon	FALSE	canonical	3	1006	junction_4	30.4302481094059	368	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTGTTTACTGTGCCC	NA	False	NA	0	True	ATTAAA	-18	NA	54737906	54732555	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475_54737585_54737673
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000023998	chr13	+	658	2	FSM	ENSMUSG00000025868.7	ENSMUST00000026986.7	648	2	-14	4	-14	-4	multi-exon	FALSE	canonical	3	1416	junction_1	0	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTATTTCTTAATCTCA	5964	False	NA	19	True	AATAAA	-23	NA	54738005	54738967	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_54738233_54738536
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024005	chr13	-	2199	5	FSM	ENSMUSG00000047547.15	ENSMUST00000091609.11	2186	5	-38	25	-38	-25	multi-exon	FALSE	canonical	3	406	junction_1	26.0708170182678	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGTATTACTGGATTAA	7367	False	NA	-6	True	AATAAA	-16	NA	54759195	54740238	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_54741856_54746534_54746647_54746856_54746975_54754456_54754504_54758890
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024009	chr13	+	4335	11	FSM	ENSMUSG00000025873.17	ENSMUST00000126071.9	4322	11	-8	-5	-8	5	multi-exon	TRUE	canonical	0	0	junction_3	132.701770900015	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCTGTGGGTCTTTCTGT	NA	False	NA	NA	False	ATTAAA	-27	NA	54769588	54811881	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024057	chr13	+	210	1	Intergenic	novelGene_95	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTATCACTTAACAG	5180	False	NA	NA	False	NA	NA	NA	55218260	55218470	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_55218300_55218500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024082	chr13	+	835	2	ISM	ENSMUSG00000021488.9	ENSMUST00000224973.2	9905	21	0	101811	0	634	5prime_fragment	FALSE	canonical	3	116	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTGAAGTGGACGGAAGC	NA	False	NA	NA	False	AATAAA	-5	NA	55357594	55361757	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr13_+_55357689_55361016
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024097	chr13	-	1216	8	FSM	ENSMUSG00000034789.9	ENSMUST00000035242.9	1168	8	-35	-13	-34	8	multi-exon	FALSE	canonical	3	320	junction_3	95.4118890465364	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGTGTCAAAACACCTAG	6407	False	NA	-9	True	AATAAA	-27	NA	55469793	55467684	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_55468028_55468124_55468188_55468315_55468367_55468557_55468658_55468739_55468808_55468914_55468994_55469202_55469272_55469350
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024141	chr13	+	3466	16	FSM	ENSMUSG00000074886.12	ENSMUST00000099482.5	2169	16	-146	-1151	-23	0	multi-exon	FALSE	canonical	3	190	junction_15	75.6883669323687	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCTCCTTTTATTTC	NA	False	NA	28	True	AATACA	-30	NA	55593127	55608740	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_55593374_55597120_55597217_55598077_55598191_55598319_55598398_55598740_55598842_55599141_55599235_55599332_55599397_55599515_55599657_55599947_55600139_55600859_55600898_55600984_55601075_55602129_55602339_55602418_55602557_55606605_55606744_55606825_55606961_55607145
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024160	chr13	-	1696	13	FSM	ENSMUSG00000021493.16	ENSMUST00000046246.13	1697	13	6	-5	-2	1	multi-exon	FALSE	canonical	3	56	junction_4	33.4015967682185	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGCCTCCCCGCTTTGC	NA	False	NA	-2	True	AATAAA	-20	NA	55661253	55646223	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_55646548_55646706_55646823_55646913_55647035_55652470_55652652_55653746_55653982_55654118_55654181_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024164	chr13	-	1010	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069968.13	1006	8	-2	-2	-2	2	multi-exon	FALSE	canonical	3	62	junction_1	27.1751687376246	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCCTCTGTCTCCCATC	NA	False	NA	0	True	AATAAA	-19	NA	55661253	55654583	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024168	chr13	-	888	7	NIC	ENSMUSG00000021493.16	novel	899	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_3	53.4716955241016	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTTGCCTCTGTCTCCC	NA	False	NA	-3	True	AATAAA	-16	NA	55661253	55654586	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_-_55654937_55655142_55655180_55655300_55655438_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024178	chr13	-	2068	17	NNC	ENSMUSG00000021494.10	novel	2199	17	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	176.104328098431	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTCTTCCTCTCTCACC	NA	False	NA	-5	True	ATTAAA	-21	NA	55684343	55678228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_-_55678542_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024191	chr13	-	2150	16	NIC	ENSMUSG00000021494.10	novel	2205	17	NA	NA	-9	-2	intron_retention	FALSE	canonical	3	642	junction_9	44.9204729370572	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGTTCTTCCTCTCTCA	NA	False	NA	-7	True	ATTAAA	-19	NA	55684343	55678230	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683859_55684108_55684220_55684293
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024276	chr13	+	1820	8	NNC	ENSMUSG00000021509.6	novel	3374	8	NA	NA	0	-2332	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_7	4.23300925429402	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATGTGTTTTTGCGTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	56586167	56619720	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_+_56586349_56590601_56590646_56596810_56596883_56598833_56599093_56611315_56611559_56612767_56612902_56618162_56618294_56618964
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024280	chr13	+	2231	7	FSM	ENSMUSG00000021540.17	ENSMUST00000069557.14	6584	7	81	4272	25	-888	multi-exon	FALSE	canonical	3	51	junction_1	16.5495887830752	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAAGTATTTCTCATTTA	NA	False	NA	NA	False	TTTAAA	-3	NA	56850903	56885918	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_56850945_56871241_56871810_56875216_56875469_56876322_56876443_56880662_56880885_56883612_56883870_56885147
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024297	chr13	-	3694	11	FSM	ENSMUSG00000005312.16	ENSMUST00000058735.12	3686	11	-7	-1	-7	1	multi-exon	FALSE	canonical	3	817	junction_3	227.671803260746	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTCGCCTCTTTTGTAG	1720	False	NA	-1	True	AATAAA	-21	NA	58363474	58323968	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_58325843_58327041_58327208_58327366_58327483_58328635_58328720_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024306	chr13	-	3602	10	FSM	ENSMUSG00000005312.16	ENSMUST00000076454.8	3561	10	-38	-3	-4	3	multi-exon	FALSE	canonical	3	487	junction_3	294.557588324433	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTTGTCTCGCCTCTTT	1723	False	NA	-6	True	AATAAA	-16	NA	58363471	58323973	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_58325843_58327041_58327208_58327366_58327483_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024369	chr13	-	2620	14	NNC	ENSMUSG00000021546.19	novel	2653	15	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2619.59134985529	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGACGTGTGCCCAATTT	4751	False	NA	-21	True	AATAAA	-17	NA	58550330	58539050	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024406	chr13	-	2250	14	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2924.63960658444	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5719	False	NA	-5	True	AATAAA	-14	NA	58549362	58539763	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58548923
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024412	chr13	-	1985	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2351.55163386533	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5123	False	NA	-5	True	AATAAA	-14	NA	58549958	58539763	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541884_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024413	chr13	-	1967	14	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2590.86606113584	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4751	False	NA	-5	True	AATAAA	-14	NA	58550330	58539763	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024444	chr13	-	2044	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2565.42785149466	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTTGGTGGTCTTTTTT	4748	False	NA	-7	True	AATAAA	-12	NA	58550333	58539765	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550202
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024450	chr13	+	2627	4	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	176.070061812526	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTGAAAGAATGTTTATA	NA	False	NA	20	True	AATAAA	-33	NA	58550068	58557910	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_+_58550332_58552381_58552470_58554815_58554905_58555723
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024463	chr13	+	2527	4	NNC	ENSMUSG00000035367.10	novel	2447	4	NA	NA	-71	2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	169.267703817224	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAAGAATGTTTATATT	NA	False	NA	22	True	AATAAA	-35	NA	58550442	58557912	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_+_58550604_58552381_58552470_58554815_58554905_58555723
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024475	chr13	+	2674	23	FSM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	-4	1123	-4	47	multi-exon	FALSE	canonical	3	649	junction_6	70.4314478267713	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCCTGTGGAGAACTAGA	1206	False	NA	68	True	AATAAA	-30	NA	59733104	59782613	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024491	chr13	+	2533	22	NIC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	3	46	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	174.275253394101	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCCCTGTGGAGAACTAG	1312	False	NA	67	True	AATAAA	-29	NA	59733210	59782612	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_+_59733274_59733966_59734096_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024520	chr13	-	1951	4	FSM	ENSMUSG00000044792.8	ENSMUST00000057115.7	1942	4	-14	5	-14	0	multi-exon	FALSE	canonical	3	417	junction_3	1.63299316185545	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTAGTGGTTCCTTTTCTT	NA	False	NA	-2	True	ATTAAA	-18	NA	59917638	59903227	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_59904818_59906703_59906810_59910555_59910610_59917437
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024564	chr13	-	1338	7	FSM	ENSMUSG00000021456.9	ENSMUST00000021907.9	1354	7	16	0	16	0	multi-exon	FALSE	canonical	3	121	junction_2	7.5	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTTATGGGTCTTCTG	NA	False	NA	2	True	AATAAA	-20	NA	63006220	62984690	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_62985095_62988084_62988205_62989599_62989738_62997190_62997332_63001787_63001881_63002717_63002881_63005941
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024586	chr13	-	2674	16	NNC	ENSMUSG00000021461.18	novel	3111	15	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_15	36.5910735927038	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGAGTCCTTGTCCTCCT	NA	False	NA	-1	True	AGTAAA	-18	NA	63579538	63459948	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550853_63553910_63554070_63579263
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024628	chr13	-	1456	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	-60	575	-60	-575	multi-exon	FALSE	canonical	3	1187	junction_3	95.3616103822386	1232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGTGTGTAATGTGTTG	NA	False	NA	1	True	AATAAA	-29	NA	64518180	64511602	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024637	chr13	-	3473	12	FSM	ENSMUSG00000038212.17	ENSMUST00000155487.8	3832	12	-7	366	-7	117	multi-exon	FALSE	canonical	3	418	junction_6	41.7491525128019	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAGTTTCTTGAAAATC	NA	False	NA	0	True	ATTAAA	-20	NA	65260796	65212842	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_65214676_65215676_65215820_65217457_65217556_65219818_65219932_65221369_65221442_65222799_65222914_65223297_65223517_65226167_65226283_65229213_65229342_65234902_65234966_65243432_65243529_65260317
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024699	chr13	-	464	4	FSM	ENSMUSG00000114353.2	ENSMUST00000224917.2	464	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	5.73488351136175	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATACTGGAGAGAAACCTT	NA	False	NA	NA	False	NA	NA	NA	66950624	66941415	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_66941596_66942701_66942763_66942962_66943090_66950528
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024713	chr13	-	1502	8	FSM	ENSMUSG00000021519.12	ENSMUST00000021991.11	1479	8	0	-23	0	23	multi-exon	FALSE	canonical	3	328	junction_6	16.4005973012185	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTTTCTCATAATTCCC	377	False	NA	NA	False	AATAAA	-41	NA	67081152	67060158	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024735	chr13	-	2630	4	FSM	ENSMUSG00000097333.8	ENSMUST00000181767.8	2656	4	26	0	-5	0	multi-exon	FALSE	canonical	3	34	junction_2	7.71722460186015	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGGTCATAGTGTTTA	9248	False	NA	NA	False	NA	NA	NA	67674270	67663899	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_67666232_67668744_67668841_67669311_67669439_67674195
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024747	chr13	-	2768	1	Intergenic	novelGene_96	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGGTCTCAGTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	68592965	68590197	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_-_68590200_68593000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024787	chr13	+	2619	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-4	3	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	39.5010548382361	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAATTGTCCGTCTTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	68730360	68740401	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024866	chr13	+	4318	16	FSM	ENSMUSG00000021611.10	ENSMUST00000022104.9	4313	16	-5	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	5.35163526410386	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTGTCATACTAATTCG	2123	False	NA	NA	False	AATAAA	-16	NA	73775029	73797962	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_73775368_73775469_73776794_73782270_73782467_73783538_73783720_73784475_73784656_73785324_73785484_73787274_73787377_73788104_73788191_73790094_73790209_73790483_73790556_73792367_73792557_73794299_73794427_73794895_73794958_73796065_73796191_73796406_73796536_73797028
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024906	chr13	-	2334	12	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	30.6737026303942	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGGTTCACTCTTTTTG	NA	False	NA	1	True	NA	NA	NA	74210420	74185750	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198355_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024909	chr13	-	2511	12	FSM	ENSMUSG00000021572.10	ENSMUST00000036456.8	3641	12	-2	1132	-2	0	multi-exon	FALSE	canonical	3	27	junction_5	28.6590098045136	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGGTTCACTCTTTTTG	NA	False	NA	1	True	NA	NA	NA	74210420	74185750	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198178_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024912	chr13	-	2271	12	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	25.7267908724551	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGGTTCACTCTTTTTG	NA	False	NA	1	True	NA	NA	NA	74210420	74185750	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024934	chr13	-	1112	6	FSM	ENSMUSG00000021576.7	ENSMUST00000022060.7	1131	6	19	0	-18	0	multi-exon	FALSE	canonical	3	601	junction_2	85.1666601435092	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGGCTGGTTTTTTGCT	NA	False	NA	1	True	AATAAA	-25	NA	74465421	74451627	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_74452168_74453659_74453770_74457802_74457962_74459786_74459832_74464448_74464511_74465225
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024969	chr13	+	968	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-13	-17	-13	17	mono-exon	FALSE	NA	NA	NA	NA	NA	1212	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTTATTTATTTGTAGC	7949	False	NA	NA	False	NA	NA	NA	74554514	74555482	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_74554500_74555500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024979	chr13	+	206	1	Intergenic	novelGene_97	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCATTGTTTAGCTCTG	NA	False	NA	NA	False	NA	NA	NA	75508672	75508878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_75508700_75508900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000024984	chr13	+	3670	12	FSM	ENSMUSG00000001542.8	ENSMUST00000001583.8	4382	12	709	3	-119	-3	multi-exon	FALSE	canonical	3	343	junction_2	37.9194448472108	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTGAATAATTTTGACGT	6161	False	NA	NA	False	AATAAA	-26	NA	75855584	75920480	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_75855917_75873071_75873120_75894410_75894533_75898043_75898208_75904393_75904654_75909996_75910122_75910263_75910349_75911666_75912235_75914272_75914340_75917657_75917830_75918664_75918710_75918798
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025018	chr13	+	665	2	Intergenic	novelGene_98	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	20	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATTAATTGGTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	80849204	80850273	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_80849433_80849836
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025024	chr13	+	1284	1	Intergenic	novelGene_99	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGAATTTTGTTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	80849204	80850488	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_80849200_80850500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025027	chr13	+	3053	1	Intergenic	novelGene_100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	80851139	80854192	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_80851100_80854200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025035	chr13	+	1863	1	NIC	ENSMUSG00000074794.11	novel	2784	2	NA	NA	2	-4369	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCAGGCACATGAATTTGC	NA	False	NA	NA	False	NA	NA	NA	81031530	81033393	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_+_81031500_81033400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025040	chr13	-	755	3	Intergenic	novelGene_101	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	53	junction_2	15	21	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTACTTGTGAACTGTT	NA	False	NA	0	True	NA	NA	NA	81792395	81784029	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_-_81784533_81785816_81786000_81792326
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025054	chr13	+	1446	2	FSM	ENSMUSG00000051098.7	ENSMUST00000057598.7	3957	2	-243	2754	-243	175	multi-exon	FALSE	canonical	3	18	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACCCAGAGTCTTAGCTT	NA	False	NA	NA	False	NA	NA	NA	81859216	81898640	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_81860102_81898079
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025063	chr13	+	2590	12	FSM	ENSMUSG00000035762.12	ENSMUST00000057495.10	2857	12	-4	271	0	0	multi-exon	TRUE	canonical	0	0	junction_10	57.0470300398157	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	21	True	ATTAAA	-22	NA	84370414	84443989	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025078	chr13	-	500	3	FSM	ENSMUSG00000017778.15	ENSMUST00000131011.2	540	3	61	-21	61	21	multi-exon	FALSE	canonical	3	10515	junction_1	2196	853	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGAATGTGATAGTTATT	NA	False	NA	7	True	AATAAA	-37	NA	86194962	86192913	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_86193028_86193845_86193989_86194719
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025095	chr13	+	191	1	Intergenic	novelGene_102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTATGAATCCTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	91005601	91005792	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_91005600_91005800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025100	chr13	+	897	3	NIC	ENSMUSG00000049517.9	novel	658	4	NA	NA	-52	6	intron_retention	FALSE	canonical	3	19809	junction_2	171.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_+_91071866_91072444_91072566_91072655
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025149	chr13	+	197	1	Intergenic	novelGene_103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTAAATTTCTATATATAAA	NA	False	NA	NA	False	NA	NA	NA	94440457	94440654	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_94440500_94440700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025160	chr13	+	576	4	FSM	ENSMUSG00000042043.7	ENSMUST00000046644.7	559	4	-11	-6	-11	6	multi-exon	FALSE	canonical	3	1242	junction_3	49.6185449202211	437	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCAGTTGGCCACTTAGT	NA	False	NA	43	True	AATAAA	-43	NA	94925406	94979436	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_94925511_94968867_94968974_94973615_94973703_94979157
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025166	chr13	+	3030	13	NIC	ENSMUSG00000042015.18	novel	3062	14	NA	NA	28	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	18.8981186600383	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTGTGGGTTTGTTTTT	NA	False	NA	14	True	AATATA	-15	NA	95112883	95159820	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_+_95113098_95114977_95115094_95131757_95131807_95133563_95133694_95136374_95136437_95142238_95142351_95145315_95145379_95146792_95146904_95151538_95151724_95153834_95153957_95154624_95154714_95155339_95155474_95158177
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025179	chr13	-	3266	14	FSM	ENSMUSG00000021681.9	ENSMUST00000022189.9	3249	14	-17	0	-17	0	multi-exon	FALSE	canonical	3	209	junction_4	22.6835706778766	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTCTTTGTATTTGC	NA	False	NA	27	True	AATAAA	-14	NA	95511877	95487190	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_95488211_95489254_95489355_95490457_95490586_95492900_95492984_95493704_95493871_95495217_95495320_95498976_95499029_95499344_95499457_95501188_95501511_95504887_95505077_95505904_95506067_95507264_95507468_95508048_95508152_95511353
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025198	chr13	-	920	1	FSM	ENSMUSG00000114133.2	ENSMUST00000220449.2	2161	1	0	1241	0	-1241	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTTTTTTTCCTAAC	NA	False	NA	NA	False	AATAAA	-17	NA	96217884	96216964	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_96217000_96217900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025228	chr13	+	188	1	Intergenic	novelGene_104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAAGTTAATCACA	NA	False	NA	21	True	NA	NA	NA	97150530	97150718	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_97150500_97150700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025234	chr13	+	3129	21	NIC	ENSMUSG00000021666.17	novel	3157	21	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_1	43.0145033680502	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCTAACAAATCTTAATT	NA	False	NA	NA	False	AATAAA	-25	NA	97274480	97312959	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_+_97274535_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025239	chr13	+	3158	21	FSM	ENSMUSG00000021666.17	ENSMUST00000161639.8	3157	21	-1	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	31.6045487232455	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCTAACAAATCTTAATT	NA	False	NA	NA	False	AATAAA	-25	NA	97274484	97312959	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025249	chr13	-	1935	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	-30	0	-30	0	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	857	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGCTGCCCTGTGTGGAT	NA	False	NA	1	True	AATAAA	-27	NA	97334895	97312838	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025301	chr13	-	500	1	FSM	ENSMUSG00000069117.5	ENSMUST00000074072.5	561	1	0	61	0	-61	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTCTGGGCCTTTGCT	NA	False	NA	NA	False	AAGAAA	-1	NA	97897140	97896640	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_97896600_97897100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025334	chr13	+	192	1	Genic_Genomic	ENSMUSG00000114458.2	novel	NA	NA	NA	NA	-16	-2389	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGACCAGTATAGCTGG	NA	False	NA	NA	False	NA	NA	NA	98937663	98937855	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr13_+_98937700_98937900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025346	chr13	-	3540	24	NIC	ENSMUSG00000009470.18	novel	8445	24	NA	NA	11	3157	combination_of_known_junctions	TRUE	canonical	3	224	junction_23	67.7519382879703	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGGTTGTACTTCTTA	NA	False	NA	-4	True	ATTAAA	-17	NA	99027537	98980408	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027434
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025356	chr13	-	1697	10	FSM	ENSMUSG00000021650.8	ENSMUST00000022153.8	1704	10	7	0	7	0	multi-exon	FALSE	canonical	3	306	junction_5	28.5894740191448	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGGTTGTGTTTCTTTTC	NA	False	NA	-11	True	AATAAA	-16	NA	99481206	99456154	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_99456902_99458068_99458183_99463145_99463221_99466459_99466574_99468943_99469036_99469395_99469475_99473170_99473289_99476408_99476539_99479820_99479914_99481071
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025363	chr13	+	1856	11	FSM	ENSMUSG00000041632.8	ENSMUST00000052249.7	1849	11	-5	-2	-5	2	multi-exon	FALSE	canonical	3	414	junction_10	37.2860563750043	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTGTGGTGTGATTTTG	NA	False	NA	22	True	AATAAA	-17	NA	99481288	99552072	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025369	chr13	+	1971	12	NIC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	2	16	junction_6	174.354630538115	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTTGTGTGGTGTGATT	NA	False	NA	19	True	AATAAA	-14	NA	99481293	99552069	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99537777_99537901_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025373	chr13	+	1851	11	NNC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	138.194392071459	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTTGTGTGGTGTGAT	NA	False	NA	18	True	AATAAA	-13	NA	99481293	99552068	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_+_99481388_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025377	chr13	+	236	1	Intergenic	novelGene_105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTACTTCCCAGAATTCC	NA	False	NA	NA	False	NA	NA	NA	99967179	99967415	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_99967200_99967400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025400	chr13	+	1235	9	FSM	ENSMUSG00000021645.17	ENSMUST00000022147.15	1222	9	-4	-9	-4	9	multi-exon	TRUE	canonical	3	544	junction_6	97.8154352594722	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATAGATATTTTCCTTT	NA	False	NA	26	True	AATAAA	-22	NA	100261355	100274207	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100272196_100272248_100273888
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025411	chr13	-	2770	9	FSM	ENSMUSG00000021638.13	ENSMUST00000069756.11	4052	9	23	1259	6	1	multi-exon	FALSE	canonical	3	42	junction_8	12.8640730330638	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTGCTCATTTGATGTC	NA	False	NA	NA	False	ATTAAA	-19	NA	100688983	100634273	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100688894
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025454	chr13	+	206	1	Intergenic	novelGene_106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTGATCTTCGGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	100868423	100868629	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_100868400_100868600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025457	chr13	-	1009	5	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_4	428.198843996571	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881584	100872462	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881130_100881238
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025458	chr13	-	917	4	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	219	junction_3	475.847547948804	45	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881584	100872462	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881238
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025459	chr13	-	1035	5	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_4	463.256408482387	107	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881584	100872462	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881156_100881238
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025474	chr13	-	1249	9	FSM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	-3	5	-3	-5	multi-exon	TRUE	canonical	3	285	junction_6	26.2865816530031	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATACTTGCAGGACTGGAG	NA	False	NA	-4	True	AATAAA	-36	NA	100912410	100896186	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025475	chr13	-	1056	8	NIC	ENSMUSG00000045273.9	novel	1251	9	NA	NA	26	-5	combination_of_known_splicesites	FALSE	canonical	3	19	junction_1	115.35888985851	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATACTTGCAGGACTGGAG	NA	False	NA	-4	True	AATAAA	-36	NA	100912381	100896186	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_-_100896703_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025494	chr13	-	3220	16	FSM	ENSMUSG00000021629.11	ENSMUST00000067246.6	3179	16	-38	-3	-38	3	multi-exon	FALSE	canonical	3	198	junction_14	28.3666470818577	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGCAAATGAATAATTGGT	NA	False	NA	-1	True	AATAAA	-22	NA	100969973	100939152	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_100939970_100940369_100940499_100943041_100943269_100945591_100945788_100947813_100947944_100949155_100949314_100949805_100950015_100950190_100950480_100951103_100951275_100953516_100953594_100954633_100954722_100957626_100957715_100961423_100961510_100962959_100963027_100965407_100965531_100969608
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025509	chr13	-	4058	13	FSM	ENSMUSG00000021710.12	ENSMUST00000109315.5	4162	13	-36	140	-36	25	multi-exon	TRUE	canonical	3	279	junction_1	22.4276614920058	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTTCAGCTTTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	104246158	104159704	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025553	chr13	+	1016	10	NIC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	409	junction_5	30.3205101100449	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365442	104386125	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025558	chr13	-	1874	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	12	185	12	-185	multi-exon	FALSE	canonical	3	502	junction_8	84.1316241226496	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTGCAGATTGCATTAG	NA	False	NA	-5	True	AATAAA	-29	NA	104953449	104767832	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025564	chr13	+	571	5	FSM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	29	1765	29	-851	multi-exon	FALSE	canonical	3	138	junction_4	17.2536228079786	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTCTTCCCCTTACCATTC	NA	False	NA	NA	False	AAAAAG	-28	NA	104953713	104974017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_104953875_104963562_104963611_104969361_104969506_104970755_104970829_104973872
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025587	chr13	-	687	4	FSM	ENSMUSG00000068184.8	ENSMUST00000163558.3	678	4	-9	0	-9	0	multi-exon	FALSE	canonical	3	548	junction_2	39.4151691047439	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295166	108189122	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_108189489_108217886_108217928_108228067_108228158_108294976
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025613	chr13	+	876	1	FSM	ENSMUSG00000059751.8	ENSMUST00000074680.8	795	1	-24	-57	-24	57	mono-exon	FALSE	NA	NA	NA	NA	NA	1970	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTTGTAGCATCTTGAT	NA	False	NA	NA	False	AATAAA	-29	NA	108807112	108807988	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_108807100_108808000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025622	chr13	+	2798	14	FSM	ENSMUSG00000021701.9	ENSMUST00000022212.9	2800	14	2	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	11.0769230769231	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGGTCTCCTGTCCTTGC	NA	False	NA	6	True	AATAAA	-17	NA	110531581	110537378	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_110531972_110532548_110532657_110532809_110532927_110533124_110533255_110533440_110533529_110534004_110534101_110534221_110534421_110534507_110534656_110534906_110535005_110535212_110535343_110535554_110535796_110535913_110536044_110536296_110536408_110536566
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025635	chr13	-	3390	12	FSM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	158	-249	158	-3	multi-exon	FALSE	canonical	3	389	junction_6	235.263031976713	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATATTGTTGTTCTTTGTA	NA	False	NA	-7	True	AATAAA	-12	NA	111626404	111562216	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025650	chr13	+	5420	17	FSM	ENSMUSG00000021756.13	ENSMUST00000183663.8	8678	17	21	3237	10	-11	multi-exon	FALSE	canonical	3	291	junction_16	42.4389267065038	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTCGTGTGTAAAAATG	NA	False	NA	24	True	AATAAA	-25	NA	112600624	112643383	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112624242_112624404_112625037_112625193_112627016_112627177_112630122_112630206_112631112_112631324_112631723_112631907_112633818_112633921_112634255_112634403_112635282_112635424_112637646_112637744_112639324_112639407_112640238
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025703	chr13	+	1061	3	FSM	ENSMUSG00000042426.7	ENSMUST00000223866.2	1736	3	30	645	30	-645	multi-exon	FALSE	canonical	3	291	junction_2	16	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATATAGAAAAATGTGTACT	NA	False	NA	NA	False	ATTAAA	-22	NA	113064211	113068066	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_113064508_113066160_113066235_113067375
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025705	chr13	-	1020	3	FSM	ENSMUSG00000021760.6	ENSMUST00000022282.6	1042	3	22	0	5	0	multi-exon	FALSE	canonical	3	23	junction_2	4	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGTGCATTTTTTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	113182922	113179292	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_113179834_113181965_113182228_113182705
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025716	chr13	-	4482	2	FSM	ENSMUSG00000042364.12	ENSMUST00000109241.5	4447	2	-39	4	-39	2	multi-exon	FALSE	canonical	3	496	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATCGCTTGTCTTTTATT	NA	False	NA	-4	True	AATAAA	-17	NA	113755139	113728718	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_113731399_113753337
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025728	chr13	+	1873	4	ISM	ENSMUSG00000042348.11	ENSMUST00000091201.7	3364	5	15	188389	15	-186204	5prime_fragment	FALSE	canonical	3	349	junction_1	12.0277457017791	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCCATTTATGTTATTACC	NA	False	NA	NA	False	AAGAAA	-7	NA	113931055	114105608	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025740	chr13	+	206	1	Intergenic	novelGene_107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTGATATTTATGAAATAA	NA	False	NA	NA	False	NA	NA	NA	114135899	114136105	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr13_+_114135900_114136100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025756	chr13	+	1065	6	FSM	ENSMUSG00000015536.15	ENSMUST00000166176.9	1855	6	-11	801	4	0	multi-exon	TRUE	canonical	3	20	junction_1	59.3450924677011	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTGTCTCCTTTTTA	NA	False	NA	NA	False	AATAAA	-24	NA	114954783	114965265	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_114954860_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025759	chr13	-	1624	2	FSM	ENSMUSG00000042275.10	ENSMUST00000109226.5	1600	2	-24	0	-24	0	multi-exon	FALSE	canonical	3	85	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCTAGTTCGAGTTAC	NA	False	NA	-1	True	AATAAA	-22	NA	115226746	115224890	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_-_115225498_115225729
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025764	chr13	+	2263	9	FSM	ENSMUSG00000021728.9	ENSMUST00000022242.9	2923	9	346	314	-98	-314	multi-exon	FALSE	canonical	3	356	junction_8	42.5617198900608	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCCTTGTGCTGCTGGCT	NA	False	NA	NA	False	AATAAA	-26	NA	117357153	117410637	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025769	chr13	+	799	1	FSM	ENSMUSG00000021728.9	ENSMUST00000224455.2	2136	1	1329	8	1329	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAAACTGTGCATTGTT	NA	False	NA	NA	False	NA	NA	NA	117365890	117366689	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_117365900_117366700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025798	chr13	+	2566	13	FSM	ENSMUSG00000062822.9	ENSMUST00000026519.10	2565	13	-1	0	-1	0	multi-exon	TRUE	canonical	3	76	junction_1	23.5189049253763	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599302	119622653	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025801	chr13	+	439	1	FSM	ENSMUSG00000062822.9	ENSMUST00000225292.2	1563	1	-9	1133	-1	-1133	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGCCTTCAACATGCAGAG	NA	False	NA	NA	False	NA	NA	NA	119599302	119599741	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_119599300_119599700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025820	chr13	+	3356	11	FSM	ENSMUSG00000093930.3	ENSMUST00000224188.2	3464	11	-70	178	15	0	multi-exon	FALSE	canonical	3	184	junction_1	180.959553491934	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	15	True	AATAAA	-15	NA	120151929	120169618	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025843	chr14	+	1416	6	FSM	ENSMUSG00000021774.14	ENSMUST00000022296.7	1408	6	-8	0	-8	0	multi-exon	FALSE	canonical	3	247	junction_1	27.2073519475895	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCTGTGTTCATTTC	NA	False	NA	24	True	AATAAA	-21	NA	4137828	4186974	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_4138010_4138561_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025869	chr14	+	794	1	NIC	ENSMUSG00000012405.17	novel	505	4	NA	NA	-15	-888	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTGATTTAGCTATGC	NA	False	NA	NA	False	NA	NA	NA	4198710	4199504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_+_4198700_4199500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025904	chr14	+	1398	8	FSM	ENSMUSG00000021737.5	ENSMUST00000022256.5	1387	8	3	-14	3	14	multi-exon	FALSE	canonical	3	1151	junction_1	36.7689975886408	1121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACATGTCTTTAAGTACT	NA	False	NA	39	True	AATAAA	-41	NA	8348781	8357603	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025933	chr14	-	1210	5	FSM	ENSMUSG00000033111.17	ENSMUST00000225294.2	1191	5	-11	-8	-1	2	multi-exon	FALSE	canonical	3	25	junction_4	54.4196655631032	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGAGTCTCCAGTTCCT	NA	False	NA	0	True	AATAAA	-26	NA	10185516	10167775	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025936	chr14	-	4744	27	Antisense	novelGene_ENSMUSG00000114246.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	50	junction_26	12.5460099977605	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGTGGACAGTGTGTGT	NA	False	NA	1	True	AATAAA	-31	NA	10517058	10231198	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr14_-_10232037_10232598_10232735_10243308_10243452_10244146_10244294_10249042_10249172_10249677_10249755_10250730_10250825_10253754_10253902_10254439_10254576_10255956_10256130_10258043_10258179_10259088_10259224_10259412_10259496_10262382_10262480_10269949_10270042_10278989_10279082_10302885_10303019_10315336_10316106_10317697_10317748_10324278_10324388_10327194_10327380_10347592_10347786_10359629_10359788_10378281_10378349_10432326_10432423_10507040_10507190_10516877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025945	chr14	+	1224	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-183	-705	-183	705	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	AATAAA	-45	NA	13669254	13670478	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_13669300_13670500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025968	chr14	+	202	1	Intergenic	novelGene_108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCATATTTGATATATCT	NA	False	NA	NA	False	AAAAAG	-4	NA	14295697	14295899	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_+_14295700_14295900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025974	chr14	+	903	5	ISM	ENSMUSG00000021748.10	ENSMUST00000224466.2	459	6	33	843	-11	30	5prime_fragment	FALSE	canonical	3	2463	junction_1	124.760771078092	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCCCAAACCATGCTGCT	NA	False	NA	NA	False	NA	NA	NA	14296824	14299217	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000025975	chr14	+	2136	4	FSM	ENSMUSG00000021748.10	ENSMUST00000224864.2	1914	4	77	-299	-11	30	multi-exon	FALSE	canonical	3	2463	junction_1	144.03008944893	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCCCAAACCATGCTGCT	NA	False	NA	NA	False	NA	NA	NA	14296824	14299217	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_14296883_14296955_14298351_14298443_14298507_14298597
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026000	chr14	-	1219	6	FSM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	-68	1250	-68	30	multi-exon	FALSE	canonical	3	219	junction_4	6.88767014308903	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGCTCTTATTATCAAA	NA	False	NA	0	True	AATACA	-25	NA	14389474	14379188	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389260
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026065	chr14	-	3370	5	FSM	ENSMUSG00000023243.10	ENSMUST00000024011.10	3392	5	22	0	22	0	multi-exon	FALSE	canonical	3	94	junction_3	12.5573683548744	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTGTGGTATGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	20231855	20190124	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_20192526_20194702_20194872_20195023_20195191_20196568_20196681_20231334
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026076	chr14	-	2794	14	FSM	ENSMUSG00000021810.4	ENSMUST00000022344.4	3132	14	27	311	-24	-311	multi-exon	FALSE	canonical	3	477	junction_8	30.9081479462529	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGTCTGACTGAGGCA	NA	False	NA	88	True	ATTAAA	-15	NA	20398162	20370230	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026117	chr14	-	2437	12	FSM	ENSMUSG00000021816.12	ENSMUST00000161989.2	2322	12	-115	0	-8	0	multi-exon	FALSE	canonical	3	102	junction_2	32.8535442821749	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTAATCTGGCTCGTT	NA	False	NA	-7	True	AATAAA	-19	NA	20596623	20557738	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_20558790_20559483_20559569_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026135	chr14	+	588	3	FSM	ENSMUSG00000063787.5	ENSMUST00000071215.5	616	3	28	0	-24	0	multi-exon	FALSE	canonical	3	1953	junction_1	51.5	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	False	NA	33	True	AATAAA	-16	NA	20753101	20754493	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_20753266_20753357_20753477_20754188
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026138	chr14	+	588	3	FSM	ENSMUSG00000063787.5	ENSMUST00000226072.2	578	3	-10	0	-10	0	multi-exon	FALSE	canonical	3	132	junction_1	962	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	False	NA	33	True	AATAAA	-16	NA	20753115	20754493	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_20753266_20753343_20753477_20754188
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026143	chr14	-	3694	15	FSM	ENSMUSG00000039308.7	ENSMUST00000223679.2	3907	15	214	-1	214	1	multi-exon	FALSE	canonical	3	47	junction_10	9.23281636117516	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTCTGCTTCATTGCA	9637	False	NA	0	True	AATAAA	-16	NA	20784416	20773796	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_20774429_20774528_20774632_20774778_20774889_20774975_20775147_20775346_20775522_20775641_20775766_20777061_20777159_20777245_20777429_20777554_20777684_20778143_20778330_20778518_20778674_20778943_20779032_20779233_20780546_20783617_20783713_20784282
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026191	chr14	+	1416	6	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	0	93	combination_of_known_junctions	FALSE	canonical	3	106	junction_5	10.1113797278116	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGCAACGATTGTTGTA	NA	False	NA	NA	False	AATAAA	-41	NA	21531501	21672138	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026205	chr14	-	1119	7	FSM	ENSMUSG00000021773.12	ENSMUST00000124549.9	2314	7	-8	1203	-8	121	multi-exon	FALSE	canonical	3	244	junction_3	15.9661099415815	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACTGAGTAGAGTTCCAA	NA	False	NA	-7	True	AATAAA	-15	NA	21899053	21897125	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_21897496_21897681_21897816_21897940_21897996_21898069_21898189_21898277_21898384_21898608_21898737_21898846
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026216	chr14	-	2500	6	NNC	ENSMUSG00000021782.15	novel	6336	27	NA	NA	1604	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	61.1764660633483	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGTGTGTAGACCCTGG	NA	False	NA	-4	True	AATAAA	-16	NA	24194652	24184020	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194365
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026233	chr14	+	2828	4	FSM	ENSMUSG00000025290.18	ENSMUST00000223939.2	2769	4	-45	-14	3	1	multi-exon	FALSE	canonical	3	9630	junction_1	1522.07774659071	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGCTCTGCTGCTTATT	NA	False	NA	18	True	AATAAA	-17	NA	24540751	24545927	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026257	chr14	-	3375	4	FSM	ENSMUSG00000055538.8	ENSMUST00000069180.8	4556	4	-2	1183	-2	-1181	multi-exon	FALSE	canonical	3	42	junction_3	4.78423336480244	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATGGCTTGATACTATT	NA	False	NA	NA	False	AAAAAG	-16	NA	25769465	25713248	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_25715827_25720050_25720216_25757434_25757636_25769034
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026260	chr14	+	2417	15	FSM	ENSMUSG00000021866.16	ENSMUST00000022416.15	2394	15	-22	-1	-22	1	multi-exon	TRUE	canonical	3	387	junction_6	25.4603533329122	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGTGCCAGCATGTTTT	314	False	NA	27	True	AATAAA	-35	NA	25842557	25887229	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026270	chr14	+	2445	16	NNC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	139.082165962746	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGCCAGCATGTTT	2	True	NA	26	True	AATAAA	-34	NA	25842606	25887228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_25842720_25843130_25843209_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026275	chr14	+	209	1	Intergenic	novelGene_109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTCTAGTTGCTTTCA	6478	False	NA	NA	False	NA	NA	NA	25849082	25849291	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_+_25849100_25849300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026345	chr14	-	2969	18	FSM	ENSMUSG00000046753.11	ENSMUST00000223689.2	4262	18	-18	1311	-18	6	multi-exon	FALSE	canonical	3	74	junction_15	12.2471661858887	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGTCATGTTAGGGTA	7508	False	NA	NA	False	AATAAA	-26	NA	27230435	27204357	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026361	chr14	+	2075	13	FSM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	44	0	-24	0	multi-exon	FALSE	canonical	3	289	junction_4	26.6816364232448	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACACTGATTTGAGATAAT	NA	False	NA	21	True	ATTAAA	-25	NA	29700337	29715176	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026364	chr14	+	2326	14	NNC	ENSMUSG00000015971.6	novel	2328	14	NA	NA	-21	-1253	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_13	85.8768900035766	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTGCTACTTACCGGAT	NA	False	NA	6	True	ATTAAA	-19	NA	29700340	29716571	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917_29715103_29716243
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026378	chr14	+	204	1	Intergenic	novelGene_110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTGTGGTTTAAAACAGAA	NA	False	NA	NA	False	NA	NA	NA	30259575	30259779	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_+_30259600_30259800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026388	chr14	+	2116	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	578.24940873141	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGACTCTTTTTTTTT	NA	False	NA	38	True	AATATA	-21	NA	30271102	30295581	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289022_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026395	chr14	+	2095	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-14	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	762.183013944526	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	34	True	AATATA	-17	NA	30271123	30295577	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289022_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293008_30293108_30293203_30294164_30294288_30295293
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026417	chr14	+	3740	8	FSM	ENSMUSG00000006526.14	ENSMUST00000006701.8	3742	8	0	2	0	-2	multi-exon	FALSE	canonical	3	200	junction_2	11.5387545750335	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACATGGTGGTTGCTTTT	NA	False	NA	NA	False	AATAAA	-30	NA	30547546	30599165	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_30547848_30584836_30584886_30586385_30586482_30588579_30588702_30592707_30592821_30593437_30593516_30594506_30594657_30596334
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026432	chr14	+	191	1	Intergenic	novelGene_111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATTCAGACCACACCAG	2877	False	NA	NA	False	NA	NA	NA	30719757	30719948	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_+_30719800_30719900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026433	chr14	-	960	4	FSM	ENSMUSG00000021917.17	ENSMUST00000226782.2	949	4	-6	-5	-6	5	multi-exon	FALSE	canonical	3	1717	junction_2	34.7658836600865	590	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTCTTTTTGCAGTG	NA	False	NA	1	True	AATAAA	-22	NA	30723572	30721777	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026443	chr14	-	1866	15	FSM	ENSMUSG00000042354.8	ENSMUST00000037739.8	1947	15	82	-1	23	1	multi-exon	TRUE	canonical	3	775	junction_10	82.9678140200482	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTTAAGATTTATTTATA	NA	False	NA	0	True	AATAAA	-21	NA	30741027	30734388	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026448	chr14	-	1797	15	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	108	junction_10	218.114789100808	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741021	30734389	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026465	chr14	+	3027	19	ISM	ENSMUSG00000042323.18	ENSMUST00000112095.8	7907	31	11	46662	0	-7668	5prime_fragment	FALSE	canonical	3	98	junction_2	38.2001308898281	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCCTAAAGAAATAGAGGA	8226	False	NA	NA	False	AAAACA	-38	NA	30741105	30796887	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr14_+_30741251_30744676_30744817_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026466	chr14	+	2931	18	ISM	ENSMUSG00000042323.18	ENSMUST00000112094.8	5154	30	-21	44037	0	-7668	5prime_fragment	FALSE	canonical	3	61	junction_10	43.0484558395886	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCCTAAAGAAATAGAGGA	8226	False	NA	NA	False	AAAACA	-38	NA	30741105	30796887	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr14_+_30741251_30744676_30744817_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026483	chr14	-	460	2	FSM	ENSMUSG00000058351.12	ENSMUST00000090205.5	426	2	-8	-26	2	26	multi-exon	FALSE	canonical	3	53	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTGTTTCTTAAAAATCTA	NA	False	NA	NA	False	TTTAAA	-6	NA	30850868	30846609	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_30846791_30850589
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026487	chr14	+	1864	14	FSM	ENSMUSG00000071547.5	ENSMUST00000227096.2	1848	14	-15	-1	-15	1	multi-exon	FALSE	canonical	3	528	junction_7	36.4029064448587	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTTCATTCCAGCTC	NA	False	NA	21	True	AATAAA	-23	NA	30852994	30861082	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_30853334_30856695_30856881_30856986_30857062_30857294_30857351_30857450_30857545_30857642_30857772_30857874_30857936_30858021_30858125_30858224_30858327_30858552_30858635_30860080_30860168_30860288_30860430_30860565_30860631_30860737
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026495	chr14	+	1818	14	NNC	ENSMUSG00000071547.5	novel	1848	14	NA	NA	32	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	167.706491990088	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCTGCTTCATTCCAG	NA	False	NA	18	True	AATAAA	-20	NA	30853041	30861079	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_30853334_30856695_30856881_30856986_30857062_30857294_30857355_30857450_30857545_30857642_30857772_30857874_30857936_30858021_30858125_30858224_30858327_30858552_30858635_30860080_30860168_30860288_30860430_30860565_30860631_30860737
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026502	chr14	-	5458	21	FSM	ENSMUSG00000021910.16	ENSMUST00000022469.13	5559	21	101	0	0	0	multi-exon	FALSE	canonical	3	883	junction_8	71.9902076674321	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAGTCTTCAAGGTTATA	9422	False	NA	-4	True	AATAAA	-17	NA	30928657	30892886	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_30894136_30894393_30894556_30895020_30895150_30895543_30895701_30896212_30896844_30898286_30899670_30901792_30901843_30902778_30902907_30906898_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026545	chr14	+	3647	21	FSM	ENSMUSG00000021893.15	ENSMUST00000022451.14	3648	21	2	-1	2	1	multi-exon	TRUE	canonical	3	214	junction_6	22.7354348979737	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAGTTTAATGTCCAGA	NA	False	NA	16	True	AATAAA	-21	NA	31058596	31093942	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_31058941_31061991_31062101_31066398_31066557_31067415_31067484_31069614_31069816_31071755_31071843_31074323_31074451_31076051_31076138_31077221_31077316_31080562_31080710_31081163_31081271_31082081_31082203_31085435_31085581_31086404_31086505_31087412_31087549_31088124_31088201_31090012_31090159_31091154_31091218_31091677_31091809_31092658_31092752_31092834
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026551	chr14	+	4056	6	FSM	ENSMUSG00000021890.7	ENSMUST00000022446.7	4918	6	688	174	-109	-174	multi-exon	FALSE	canonical	3	223	junction_4	16.2357629940819	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATGTCTTGTTTTATTT	6290	False	NA	NA	False	AATAAA	-20	NA	31217043	31231641	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_31217329_31219665_31219761_31222076_31222214_31224219_31224411_31226243_31226478_31228527
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026628	chr14	+	3756	24	FSM	ENSMUSG00000021913.9	ENSMUST00000228529.2	3723	24	-30	-3	-30	3	multi-exon	TRUE	canonical	3	463	junction_11	40.4855688541514	252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTCCTTTCCTACCG	NA	False	NA	15	True	AATAAA	-21	NA	32043945	32070111	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026664	chr14	+	552	1	FSM	ENSMUSG00000078126.5	ENSMUST00000104925.5	468	1	-14	-70	-14	70	mono-exon	FALSE	NA	NA	NA	NA	NA	1672	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTGTTACTTCATGATTA	2260	False	NA	NA	False	AATATA	-38	NA	33892597	33893149	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_33892600_33893100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026670	chr14	+	3526	13	FSM	ENSMUSG00000021794.17	ENSMUST00000022322.17	3390	13	-134	-2	-134	2	multi-exon	FALSE	canonical	3	1379	junction_7	93.7817723938577	3054	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTCTCTATGGGGACGC	NA	False	NA	15	True	AATAAA	-24	NA	34032549	34067224	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_34033300_34041838_34041920_34043724_34043781_34047469_34047534_34051245_34051341_34056068_34056249_34057258_34057397_34058049_34058188_34058452_34058534_34060716_34060841_34061883_34061976_34064075_34064139_34065560
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026683	chr14	-	524	3	FSM	ENSMUSG00000043681.6	ENSMUST00000052126.6	408	3	-115	-1	-115	1	multi-exon	FALSE	canonical	3	2248	junction_2	168.5	287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGTTTACCTCTGTTT	NA	False	NA	-5	True	AATAAA	-22	NA	34077505	34073836	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_34074035_34075654_34075718_34077242
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026702	chr14	+	6406	19	FSM	ENSMUSG00000041408.19	ENSMUST00000048263.14	6351	19	-55	0	-55	0	multi-exon	FALSE	canonical	3	756	junction_1	98.1423286185256	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGTTGTCTTTAACATAAG	NA	False	NA	14	True	AATAAA	-19	NA	34395829	34469940	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_34396318_34398910_34399432_34413638_34414692_34416943_34417063_34444220_34444317_34446662_34446816_34447084_34447222_34447856_34447969_34451136_34451365_34452505_34452618_34453465_34453567_34455687_34455765_34458626_34458803_34459227_34459344_34459812_34459978_34461187_34461396_34463013_34463103_34466765_34466862_34467581
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026722	chr14	-	3048	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-78	218	-58	-218	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGGTACACACATGTC	NA	False	NA	NA	False	AATAAA	-19	NA	36857287	36842266	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026734	chr14	-	2498	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	7	at_least_one_novel_splicesite	FALSE	canonical	1	23	junction_8	1786.95934131138	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCTGTACTTTTTTCTC	NA	False	NA	-11	True	AATAAA	-18	NA	36857252	36842773	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855753_36857151
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026755	chr14	-	2676	9	FSM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	-183	-18	-183	18	multi-exon	TRUE	canonical	3	610	junction_1	26.6868413267663	480	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACTGAGTCAGGTGTGAC	NA	False	NA	67	True	ATTAAA	-36	NA	40688947	40628383	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026770	chr14	-	1571	6	FSM	ENSMUSG00000021792.16	ENSMUST00000022317.15	1537	6	-29	-5	-16	5	multi-exon	FALSE	canonical	3	150	junction_5	72.4911029023562	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTCTGTGCACAAGTTT	NA	False	NA	-17	True	AATAAA	-16	NA	40735761	40715691	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735654
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026843	chr14	+	504	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	-1	-14	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	93	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCAAGAAGGTGGACTCC	NA	False	NA	NA	False	NA	NA	NA	46321483	46322443	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_46321631_46322086
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026851	chr14	-	731	2	Antisense	novelGene_ENSMUSG00000044285.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	11080	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTCTTTATATATATTGG	NA	False	NA	NA	False	NA	NA	NA	46322442	46321483	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr14_-_46322015_46322242
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026874	chr14	-	2775	6	FSM	ENSMUSG00000037580.11	ENSMUST00000089959.7	2775	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	5.3665631459995	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTGGATGTTGTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	47426870	47391351	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_47393382_47394865_47394951_47396319_47396352_47403932_47403989_47406668_47406779_47426408
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026912	chr14	-	2784	19	FSM	ENSMUSG00000037544.15	ENSMUST00000043296.10	2964	19	180	0	-20	0	multi-exon	FALSE	canonical	3	355	junction_12	54.7968470301389	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTCTTCGCATTGTTA	NA	False	NA	NA	False	NA	NA	NA	47655684	47625235	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026915	chr14	-	2767	19	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	-9	-2	combination_of_known_splicesites	FALSE	canonical	3	19	junction_1	120.677715884546	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTTTCTTCGCATTGT	NA	False	NA	NA	False	NA	NA	NA	47655673	47625237	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_-_47625577_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026921	chr14	-	2735	19	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	-9	-2	combination_of_known_junctions	FALSE	canonical	3	64	junction_10	111.61232785134	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTTTCTTCGCATTGT	NA	False	NA	NA	False	NA	NA	NA	47655673	47625237	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643323_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026933	chr14	+	3128	4	FSM	ENSMUSG00000037536.15	ENSMUST00000163324.8	3132	4	0	4	0	0	multi-exon	FALSE	canonical	3	23	junction_2	28.4526897771644	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTCTGGTCTTAAAATA	NA	False	NA	10	True	AATAAA	-18	NA	47710017	47769415	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_47710175_47738250_47738328_47763661_47763772_47766631
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026944	chr14	+	2471	1	ISM	ENSMUSG00000037536.15	ENSMUST00000163324.8	3132	4	56927	4	3409	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTCTGGTCTTAAAATA	NA	False	NA	10	True	AATAAA	-18	NA	47766944	47769415	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr14_+_47766900_47769400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026958	chr14	+	309	2	FSM	ENSMUSG00000021843.18	ENSMUST00000186466.3	634	2	-5	330	0	-330	multi-exon	FALSE	canonical	3	129	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGAATGGGACCCTTCGT	NA	False	NA	NA	False	AAAACA	-44	NA	47886767	47901442	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_47886847_47901212
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000026984	chr14	+	195	1	Intergenic	novelGene_112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAGTACTCAGCCGCTCA	NA	False	NA	NA	False	NA	NA	NA	49226722	49226917	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_+_49226700_49226900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027011	chr14	-	1868	10	FSM	ENSMUSG00000006288.9	ENSMUST00000006451.8	1842	10	-19	-7	-19	7	multi-exon	FALSE	canonical	3	788	junction_6	38.5313724991294	588	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTCTCTTTATTGTCT	NA	False	NA	1	True	ATTAAA	-28	NA	51022995	51002864	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_51003480_51004599_51004745_51009572_51009788_51009930_51010078_51010733_51010791_51012747_51012840_51014718_51014870_51015213_51015426_51018931_51019065_51022894
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027031	chr14	-	1314	2	NNC	ENSMUSG00000071470.5	novel	444	3	NA	NA	5090	-4313	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTGTGTATGAGTTGT	1962	False	NA	-4	True	AATAAA	-12	NA	51040099	51035574	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_51036656_51039866
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027045	chr14	+	2194	15	FSM	ENSMUSG00000036023.7	ENSMUST00000228672.2	2173	15	-21	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	45.539397610134	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045381	51058757	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027058	chr14	-	185	1	Intergenic	novelGene_113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATTAATTAATTAATTGT	4427	False	NA	NA	False	NA	NA	NA	51142357	51142172	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_-_51142200_51142400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027087	chr14	-	1504	6	FSM	ENSMUSG00000035953.15	ENSMUST00000162957.8	1465	6	-39	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	295.870647412007	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	-9	True	AATAAA	-18	NA	51168308	51164671	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51167040_51167148_51167590_51167782_51168069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027088	chr14	-	1646	7	NNC	ENSMUSG00000035953.15	novel	2755	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	298.976030254378	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	-9	True	AATAAA	-18	NA	51168308	51164671	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_51165495_51166277_51166369_51166462_51166516_51166622_51166765_51167040_51167148_51167590_51167782_51168069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027160	chr14	-	2920	5	FSM	ENSMUSG00000049295.18	ENSMUST00000067549.15	2933	5	13	0	-1	0	multi-exon	FALSE	canonical	3	82	junction_4	128.195895020082	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	4707	False	NA	-7	True	AATAAA	-20	NA	52258177	52243538	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52257979
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027162	chr14	-	3096	6	NIC	ENSMUSG00000049295.18	novel	3017	6	NA	NA	-87	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_5	164.327234504814	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	5627	False	NA	-7	True	AATAAA	-20	NA	52257257	52243538	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52252404_52252726_52257204
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027167	chr14	-	2828	4	NNC	ENSMUSG00000049295.18	novel	2933	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	181.52930586792	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	4707	False	NA	-7	True	AATAAA	-20	NA	52258177	52243538	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_52244605_52244820_52244950_52245684_52247120_52257979
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027215	chr14	-	2630	8	NIC	ENSMUSG00000060373.16	novel	2498	9	NA	NA	7	5	combination_of_known_junctions	FALSE	canonical	3	714	junction_5	1238.64623270566	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGCTGGTGTGTACAAA	8732	False	NA	-33	True	AATAAA	-24	NA	52341478	52310996	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027222	chr14	-	2613	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227458.2	1683	9	-18	-912	7	4	multi-exon	FALSE	canonical	3	633	junction_2	1099.6436638748	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAAGCTGGTGTGTACAA	8732	False	NA	-34	True	AATAAA	-23	NA	52341478	52310997	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027268	chr14	-	4521	26	FSM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	152	0	152	0	multi-exon	FALSE	canonical	3	979	junction_21	82.6076606617086	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTTATGACCATTT	NA	False	NA	-1	True	AATAAA	-40	NA	52434721	52397870	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027280	chr14	-	2102	6	ISM	ENSMUSG00000053754.15	ENSMUST00000200169.6	8509	38	-25	29494	-25	-3256	5prime_fragment	FALSE	canonical	3	27	junction_5	9.99199679743744	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACAGAGGACCTGGATAT	406	False	NA	NA	False	NA	NA	NA	52495262	52465101	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr14_-_52465138_52468894_52469010_52470001_52470388_52472580_52472959_52474186_52475246_52495134
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027302	chr14	-	2007	11	FSM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	4	14	0	2	multi-exon	FALSE	canonical	3	126	junction_7	19.5910693939866	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGAAGTGAAATTATGG	NA	False	NA	-30	True	AATAAA	-25	NA	52542581	52532311	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027334	chr14	-	2262	12	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-145	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_9	49.5403667112416	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655382	54606898	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54651336_54651471_54654045_54654228_54655357
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027337	chr14	-	2349	13	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-171	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	55.5995103895309	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655408	54606898	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650180_54650242_54651336_54651471_54654045_54654228_54655357
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027378	chr14	+	429	5	FSM	ENSMUSG00000010406.13	ENSMUST00000010550.12	418	5	-11	0	-11	0	multi-exon	FALSE	canonical	3	1056	junction_1	196.876230154887	366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTGGCTTTCTTTTC	NA	False	NA	27	True	AATAAA	-28	NA	54664354	54667213	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_54664418_54664490_54664549_54664627_54664696_54666040_54666106_54667038
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027410	chr14	-	2155	16	NIC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	-9	-262	combination_of_known_junctions	FALSE	canonical	3	95	junction_15	172.951425422156	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACTAGAGGACACAAGCCA	4850	False	NA	NA	False	NA	NA	NA	54754827	54744905	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54754703
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027415	chr14	-	1596	10	FSM	ENSMUSG00000022177.10	ENSMUST00000022784.9	1587	10	-7	-2	-7	2	multi-exon	FALSE	canonical	3	401	junction_5	37.1423687391577	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTAGTCATTTTTCCTTG	NA	False	NA	1	True	AATAAA	-22	NA	54791825	54779239	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_54779715_54779839_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027421	chr14	-	3453	8	FSM	ENSMUSG00000022178.12	ENSMUST00000054487.10	3397	8	-53	-3	-53	3	multi-exon	TRUE	canonical	3	297	junction_5	54.835933399886	335	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTATTGTGGTTCT	NA	False	NA	-3	True	AGTAAA	-21	NA	54815068	54804925	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_54806514_54806932_54807002_54807701_54807754_54807833_54807965_54809057_54809121_54809222_54809291_54810848_54810951_54813688
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027428	chr14	-	2597	7	FSM	ENSMUSG00000022179.6	ENSMUST00000022786.6	2670	7	74	-1	74	1	multi-exon	FALSE	canonical	3	19	junction_6	4.10960933531265	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTTGTTGGGCTTAGTG	NA	False	NA	0	True	NA	NA	NA	54843376	54821118	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_54822164_54822435_54822549_54823108_54823213_54823392_54823455_54828578_54828897_54832570_54833409_54843259
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027457	chr14	-	2431	12	FSM	ENSMUSG00000022185.20	ENSMUST00000126166.8	2369	12	-65	3	0	-2	multi-exon	FALSE	canonical	3	94	junction_11	105.5899600787	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTGAGTGCCTTTCCTT	3758	False	NA	-3	True	AATAAA	-22	NA	54891138	54879620	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027481	chr14	-	1285	10	NIC	ENSMUSG00000022185.20	novel	2365	13	NA	NA	-2	286	intron_retention	FALSE	canonical	2	44	junction_9	151.257527105836	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTAAAGAAAAGAAGAGTGA	3742	False	NA	NA	False	NA	NA	NA	54891154	54881425	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_-_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884291_54885544_54885588_54889173_54889316_54891136
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027498	chr14	+	200	1	Intergenic	novelGene_114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTTACTTGGTGTGGT	6117	False	NA	NA	False	NA	NA	NA	55069056	55069256	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_+_55069100_55069300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027505	chr14	+	1057	7	FSM	ENSMUSG00000022194.16	ENSMUST00000022808.14	1030	7	-12	-15	-12	15	multi-exon	FALSE	canonical	3	2071	junction_6	205.041797906887	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACTGTGGAAGGGGGGA	NA	False	NA	49	True	NA	NA	NA	55131592	55135641	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027509	chr14	+	1875	5	FSM	ENSMUSG00000022194.16	ENSMUST00000150975.8	1775	5	-12	-88	-5	15	multi-exon	FALSE	canonical	3	2245	junction_1	156.472641378613	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACTGTGGAAGGGGGGA	NA	False	NA	49	True	NA	NA	NA	55131599	55135641	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027532	chr14	+	2838	2	FSM	ENSMUSG00000045691.15	ENSMUST00000050575.9	2830	2	-8	0	-8	0	multi-exon	FALSE	canonical	3	37	junction_1	0	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGGTCTTTATTTCCGTT	NA	False	NA	7	True	AATAAA	-18	NA	55332232	55336443	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_55333464_55334836
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027578	chr14	+	1961	10	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_9	476.067092480892	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9014	False	NA	27	True	ATTAAA	-24	NA	55777845	55786329	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785932
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027581	chr14	+	2593	8	FSM	ENSMUSG00000040618.8	ENSMUST00000226664.2	2631	8	-24	62	0	0	multi-exon	FALSE	canonical	3	1491	junction_4	101.915130758642	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9014	False	NA	27	True	ATTAAA	-24	NA	55777845	55786329	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782883_55785153_55785292_55785496_55785593_55785761
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027583	chr14	+	2127	10	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_9	498.785413668933	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9014	False	NA	27	True	ATTAAA	-24	NA	55777845	55786329	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785766
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027584	chr14	+	2126	10	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	515.589630100012	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9014	False	NA	27	True	ATTAAA	-24	NA	55777845	55786329	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_55777971_55779868_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027600	chr14	+	2130	10	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	515.589630100012	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9014	False	NA	27	True	ATTAAA	-24	NA	55777845	55786329	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_55777975_55779868_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027617	chr14	+	2557	15	NIC	ENSMUSG00000022214.16	novel	2660	14	NA	NA	10	0	combination_of_known_junctions	TRUE	canonical	3	28	junction_1	31.9189023390625	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55797948	55807521	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_+_55798085_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027645	chr14	+	3444	21	FSM	ENSMUSG00000047098.19	ENSMUST00000019443.15	3485	21	22	19	-14	1	multi-exon	FALSE	canonical	3	102	junction_6	30.6031044176894	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTGGTGGTCCTTCTTCC	4196	False	NA	19	True	AATAAA	-22	NA	55829186	55841131	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_55829530_55829625_55829773_55829917_55830074_55830289_55830350_55830462_55830533_55831751_55831930_55832379_55832759_55832926_55833218_55833463_55833713_55833798_55833985_55834108_55834316_55836094_55836269_55836360_55836460_55836552_55836643_55838505_55838621_55838735_55838855_55839098_55839213_55839337_55839396_55840059_55840157_55840712_55840882_55840988
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027659	chr14	+	2255	9	FSM	ENSMUSG00000002325.16	ENSMUST00000130697.8	2459	9	202	2	202	1	multi-exon	FALSE	canonical	3	21	junction_1	14.5086181285469	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTGGTCATGTGGTGTC	NA	False	NA	7	True	NA	NA	NA	55841643	55847485	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_55841701_55842508_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027666	chr14	+	2133	20	FSM	ENSMUSG00000002324.9	ENSMUST00000002395.8	2184	20	51	0	51	0	multi-exon	FALSE	canonical	3	23	junction_6	6.49738920505725	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTCTTTTTTTTTTT	1379	False	NA	9	True	ATTAAA	-21	NA	55855544	55862852	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_55855811_55856002_55856116_55856198_55856268_55856354_55856498_55856577_55856654_55857036_55857158_55858691_55858777_55859671_55859752_55859883_55860020_55860101_55860175_55860250_55860343_55860620_55860671_55860953_55861092_55861377_55861445_55861532_55861700_55861805_55861855_55862179_55862244_55862341_55862459_55862529_55862637_55862732
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027680	chr14	-	3511	30	NNC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	11	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_28	95.3179422093	36	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGAAGCAGCTGTGACGT	9756	False	NA	-5	True	AATAAA	-23	NA	55873130	55863174	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866529_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027738	chr14	-	1674	6	FSM	ENSMUSG00000002329.8	ENSMUST00000002400.7	1733	6	49	10	-8	5	multi-exon	FALSE	canonical	3	347	junction_4	50.5750926840476	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGACAATTTTCTTTAA	2334	False	NA	-18	True	AATAAA	-19	NA	55897916	55895345	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897556_55897624_55897686_55897794
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027742	chr14	-	827	4	FSM	ENSMUSG00000010376.16	ENSMUST00000010520.10	824	4	3	-6	3	6	multi-exon	FALSE	canonical	3	1795	junction_3	42.0502345085283	395	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTTCTTCTTGACACAAA	NA	False	NA	-5	True	AATAAA	-21	NA	55909578	55899713	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_55900083_55900871_55900955_55901268_55901317_55909251
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027768	chr14	-	2936	15	NNC	ENSMUSG00000022218.17	novel	2852	15	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	57.854717762227	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGTTTAGTAGTCCTG	395	False	NA	-22	True	AATAAA	-23	NA	55950952	55937489	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950639
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027777	chr14	-	2527	16	FSM	ENSMUSG00000040472.16	ENSMUST00000228826.2	2492	16	-22	-13	4	13	multi-exon	FALSE	canonical	3	103	junction_15	120.970777003741	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTCACCGGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	55959655	55953320	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027778	chr14	-	2347	17	FSM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	0	-461	0	13	multi-exon	FALSE	canonical	3	119	junction_16	115.082697847027	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTCACCGGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	55959720	55953320	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959657
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027780	chr14	-	2590	16	FSM	ENSMUSG00000040472.16	ENSMUST00000169237.8	2547	16	-30	-13	-4	13	multi-exon	FALSE	canonical	3	306	junction_12	87.1219834484959	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTCACCGGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	55959663	55953320	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027782	chr14	-	1662	11	ISM	ENSMUSG00000040472.16	ENSMUST00000169237.8	2547	16	2234	-13	191	13	3prime_fragment	FALSE	canonical	3	454	junction_10	29.2567940827426	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTCACCGGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	55957399	55953320	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027794	chr14	-	2438	17	FSM	ENSMUSG00000040472.16	ENSMUST00000227061.2	2882	17	-4	448	-4	13	multi-exon	FALSE	canonical	3	103	junction_16	117.751443064406	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTCACCGGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	55959663	55953320	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027811	chr14	-	1421	9	FSM	ENSMUSG00000002332.17	ENSMUST00000002403.10	1477	9	56	0	-35	0	multi-exon	FALSE	canonical	3	126	junction_7	15.4833580014156	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGAGTTCTCATTCTGT	NA	False	NA	0	True	AATAAA	-20	NA	55983091	55976476	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_55976878_55977008_55977090_55977392_55977463_55978183_55978331_55978639_55978773_55980910_55980991_55981114_55981259_55982374_55982546_55982897
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027833	chr14	-	1902	10	FSM	ENSMUSG00000022221.15	ENSMUST00000022830.14	1892	10	-8	-2	-8	2	multi-exon	FALSE	canonical	3	118	junction_2	8.73194786861711	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTGAGGTGTCAATCCA	NA	False	NA	1	True	AATAAA	-22	NA	56026330	56022449	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694_56025839_56026073
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027839	chr14	-	2085	9	ISM	ENSMUSG00000022221.15	ENSMUST00000168716.8	1964	10	34	-1	34	0	intron_retention	FALSE	canonical	3	118	junction_2	9.25928587959136	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTCTGAGGTGTCAATC	NA	False	NA	-1	True	AATAAA	-20	NA	56026280	56022451	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027880	chr14	+	873	3	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	-4	23144	-4	309	5prime_fragment	FALSE	canonical	3	870	junction_1	10.5	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGATATATAGAATCTCC	1774	False	NA	NA	False	ATTAAA	-40	NA	56905700	56911743	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr14_+_56906022_56909861_56910018_56911347
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027894	chr14	+	240	1	Intergenic	novelGene_115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAGTATCAGTTTCTAG	NA	False	NA	NA	False	NA	NA	NA	57009902	57010142	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_+_57009900_57010100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027917	chr14	-	851	5	FSM	ENSMUSG00000021951.8	ENSMUST00000022518.8	836	5	-13	-2	-13	1	multi-exon	FALSE	canonical	3	133	junction_4	52.3115665986023	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTCATGAGGTTGAGAT	NA	False	NA	-7	True	AATAAA	-21	NA	57809039	57787052	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027925	chr14	+	2009	4	FSM	ENSMUSG00000021963.18	ENSMUST00000128764.9	5125	4	-50	3166	-50	1137	multi-exon	FALSE	canonical	3	2836	junction_1	125.222468697381	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGAGTGACTGCCTATC	NA	False	NA	NA	False	NA	NA	NA	58035586	58040929	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_58035812_58035944_58036055_58038950_58039074_58039378
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027936	chr14	-	2304	9	FSM	ENSMUSG00000021965.4	ENSMUST00000022536.3	2260	9	-38	-6	-16	6	multi-exon	FALSE	canonical	3	155	junction_3	28.547110186497	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTGCCAACTCTGAAAT	NA	False	NA	-1	True	AATAAA	-25	NA	58063658	58044011	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_58044989_58045431_58045536_58047399_58047601_58049036_58049123_58054101_58054209_58057610_58058020_58059492_58059659_58060357_58060420_58063466
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027954	chr14	+	520	2	NNC	ENSMUSG00000021967.5	novel	2877	2	NA	NA	2	2	at_least_one_novel_splicesite	FALSE	canonical	3	155	junction_1	0	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGTCTCATACGGAATA	NA	False	NA	27	True	ATTAAA	-19	NA	58063692	58064407	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_58063771_58063965
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000027965	chr14	-	2326	12	FSM	ENSMUSG00000021973.10	ENSMUST00000022543.10	2329	12	3	0	3	0	multi-exon	FALSE	canonical	3	153	junction_3	66.5872943480589	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTCTCTCATCCATTC	NA	False	NA	-1	True	NA	NA	NA	58236716	58153717	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_58154833_58156279_58156438_58156800_58156910_58161396_58161569_58164653_58164752_58169694_58169761_58181044_58181128_58182841_58182890_58191592_58191669_58192455_58192488_58209107_58209247_58236486
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028020	chr14	-	2236	10	FSM	ENSMUSG00000021982.15	ENSMUST00000056997.15	2202	10	-2	-32	0	32	multi-exon	FALSE	canonical	3	30	junction_1	34.1362556619393	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTGTTGTTGTTGTTGT	NA	False	NA	0	True	NA	NA	NA	59835395	59801392	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_59802045_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028035	chr14	-	3865	15	FSM	ENSMUSG00000114797.2	ENSMUST00000041905.8	3913	15	54	-6	-8	6	multi-exon	FALSE	canonical	3	173	junction_2	25.178546099278	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGGTCTCAGCAGTTGTA	NA	False	NA	-10	True	AATAAA	-24	NA	60488902	60455520	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_60457608_60459031_60459128_60460765_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028055	chr14	-	4009	10	FSM	ENSMUSG00000060548.14	ENSMUST00000111236.4	3958	10	-25	-26	-25	26	multi-exon	FALSE	canonical	3	37	junction_9	15.475986974649	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATGTGTCAAGTCAAAAT	NA	False	NA	0	True	AATAAA	-21	NA	61275424	61201297	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61275298
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028066	chr14	-	4294	17	NNC	ENSMUSG00000021929.10	novel	4069	17	NA	NA	-214	7	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_16	150.394156614378	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGACTTATTTCTGGAA	6332	False	NA	-5	True	AATAAA	-29	NA	61677537	61602652	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150_61608223_61608319_61608425_61610406_61610536_61611732_61611865_61620683_61620729_61622036_61622207_61622551_61622639_61624872_61624959_61628612_61628709_61628847_61628901_61628996_61629027_61629204_61629295_61640446_61640492_61677167
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028078	chr14	+	1634	3	FSM	ENSMUSG00000035235.14	ENSMUST00000165015.9	1619	3	-15	0	-15	0	multi-exon	FALSE	canonical	3	46	junction_1	100	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61835680	61843395	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_61835796_61837242_61837345_61841978
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028081	chr14	+	1560	3	FSM	ENSMUSG00000035235.14	ENSMUST00000039562.8	1550	3	-10	0	-10	0	multi-exon	FALSE	canonical	3	148	junction_1	49	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61836978	61843395	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_61837020_61837242_61837345_61841978
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028089	chr14	+	199	1	Genic_Genomic	ENSMUSG00000098088.2	novel	NA	NA	NA	NA	752	20	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACATTTCCTTTGAAATAA	6004	False	NA	NA	False	NA	NA	NA	61867684	61867883	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr14_+_61867700_61867900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028096	chr14	+	1304	10	NIC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	8	-74	combination_of_known_splicesites	TRUE	canonical	3	239	junction_2	190.414168473765	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAATCTTGCCCCTTTCC	NA	False	NA	15	True	AATAAA	-17	NA	62569524	62610367	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_+_62569626_62584016_62584092_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028109	chr14	-	3707	18	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	0	-7205	intron_retention	FALSE	canonical	3	358	junction_3	52.091548371734	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGTGTGGTTTAGGAAA	NA	False	NA	-6	True	AATAAA	-13	NA	62998587	62930457	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938079_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951292_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028122	chr14	+	3591	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	-22	1174	-22	-1174	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	2370	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAACTTGGGGTCTTATT	NA	False	NA	11	True	TATAAA	-21	NA	63359888	63382198	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028158	chr14	-	1846	7	FSM	ENSMUSG00000021273.12	ENSMUST00000238526.2	3048	7	-51	1253	-51	-1250	multi-exon	FALSE	canonical	3	727	junction_5	64.1242283904194	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCCTTGTCTTTCTCAT	2831	False	NA	-34	True	AATAGA	-13	NA	63402425	63383851	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63400750_63400935_63401980
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028184	chr14	-	1539	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_4	1072.42254236611	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	-16	True	ATTAAA	-18	NA	63746217	63729795	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733324_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028190	chr14	-	1368	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-111	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	1013.63834156962	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGAGACTTATTCTCTT	NA	False	NA	-12	True	ATTAAA	-17	NA	63746217	63729906	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_63730218_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028216	chr14	-	1340	6	ISM	ENSMUSG00000054733.10	ENSMUST00000067927.9	1860	11	14988	-4	2	4	3prime_fragment	FALSE	canonical	3	54	junction_3	9.47839648885823	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCTGCTGTGAGTCTGTC	NA	False	NA	0	True	AATAAA	-24	NA	64678364	64360069	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr14_-_64360803_64447876_64447984_64471277_64471383_64522512_64522633_64551135_64551205_64678158
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028252	chr14	+	223	1	Intergenic	novelGene_116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGACCCAGGGACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65340670	65340893	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_+_65340700_65340900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028261	chr14	-	2866	15	FSM	ENSMUSG00000022031.7	ENSMUST00000022609.7	2851	15	-13	-2	-13	2	multi-exon	FALSE	canonical	3	390	junction_14	46.0192949772602	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCGTGTGGTGCTTTTT	3431	False	NA	NA	False	AATAAA	-18	NA	65830537	65767895	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028262	chr14	-	2809	15	FSM	ENSMUSG00000022031.7	ENSMUST00000225355.2	2771	15	-36	-2	-13	2	multi-exon	FALSE	canonical	3	153	junction_14	90.9467493893531	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCGTGTGGTGCTTTTT	3431	False	NA	NA	False	AATAAA	-18	NA	65830537	65767895	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830430
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028276	chr14	+	3796	9	FSM	ENSMUSG00000022032.15	ENSMUST00000022610.15	3794	9	-2	0	-2	0	multi-exon	FALSE	canonical	3	27	junction_2	7.61474720525902	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGCTGATAAGTGGTCCA	816	False	NA	NA	False	AATAAA	-19	NA	65903849	66002275	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_65904196_65908005_65908124_65927216_65927346_65967969_65968645_65975872_65975954_65977738_65977838_65979580_65979629_65997033_65997229_66000170
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028304	chr14	+	2173	9	FSM	ENSMUSG00000022035.7	ENSMUST00000022614.7	2230	9	57	0	-1	0	multi-exon	FALSE	canonical	3	231	junction_2	11.4229757506527	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATTGATATCTGAATTC	NA	False	NA	31	True	AATAAA	-20	NA	66074807	66104056	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66089118_66091550_66091627_66093872_66093977_66094142_66094346_66097618_66097665_66102578
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028314	chr14	+	1153	1	FSM	ENSMUSG00000068165.4	ENSMUST00000089275.4	628	1	-139	-386	-139	386	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAAAGGAAAGAGAGGAG	1295	False	NA	NA	False	AATAAA	-30	NA	66282389	66283542	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_66282400_66283500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028322	chr14	-	2041	19	NNC	ENSMUSG00000022040.9	novel	2035	19	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	50.2040281695049	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTTGTGTTCTTGAGAA	NA	False	NA	-1	True	AATAAA	-20	NA	66361947	66321821	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_66322210_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345421_66345617_66347564_66347725_66354159_66354245_66361783
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028328	chr14	+	3687	6	FSM	ENSMUSG00000022043.20	ENSMUST00000022623.13	3678	6	-9	0	-9	0	multi-exon	FALSE	canonical	3	340	junction_4	10.4957134107215	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTTGTTTTTTATTGTC	NA	False	NA	31	True	NA	NA	NA	66534470	66548873	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_66534999_66540629_66540726_66541453_66541685_66544474_66544498_66545260_66545380_66546183
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028342	chr14	+	2301	3	FSM	ENSMUSG00000046204.15	ENSMUST00000089236.11	5518	3	67	3150	-5	-942	multi-exon	FALSE	canonical	3	15	junction_1	6.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTTTAAGAAGAAAAGAACC	NA	False	NA	NA	False	NA	NA	NA	67148685	67155322	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_67148743_67152770_67152900_67153207
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028343	chr14	+	2134	4	NNC	ENSMUSG00000046204.15	novel	5518	3	NA	NA	-5	-1286	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	11.7756811551038	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAGACTAAGTTCCAATA	NA	False	NA	NA	False	NA	NA	NA	67148685	67154978	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_67148743_67151755_67151933_67152770_67152900_67153207
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028358	chr14	-	3422	10	FSM	ENSMUSG00000022052.10	ENSMUST00000089230.7	4010	10	-26	614	-26	4	multi-exon	FALSE	canonical	3	602	junction_4	68.1900032498157	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAATTTGTATTTAAACA	NA	False	NA	-4	True	AATAAA	-25	NA	67309919	67252118	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67307683_67307759_67309538
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028396	chr14	+	3422	4	FSM	ENSMUSG00000022055.8	ENSMUST00000022639.8	3380	4	-47	5	-47	-5	multi-exon	FALSE	canonical	3	158	junction_3	13.589211407093	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGGGTGTGCAGTCTT	NA	False	NA	7	True	AATAAA	-21	NA	68321264	68326539	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_68322459_68323422_68323548_68323935_68324256_68324756
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028418	chr14	+	3013	13	NNC	ENSMUSG00000022066.17	novel	3589	13	NA	NA	-28	474	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_8	28.7614711414806	46	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGACATTTTAAACAGAAA	NA	False	NA	NA	False	AATAAA	-20	NA	69792844	69822389	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_69792988_69803184_69803294_69804771_69804970_69806401_69806608_69810100_69810252_69811092_69811197_69812411_69812472_69812693_69812825_69814520_69814688_69817337_69817663_69819266_69819353_69820021_69820184_69821218
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028434	chr14	-	2717	10	FSM	ENSMUSG00000034190.10	ENSMUST00000036381.10	2649	10	-65	-3	-58	3	multi-exon	FALSE	canonical	3	245	junction_7	17.0583602471336	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGTTGTCTATTCTTA	NA	False	NA	1	True	ATTAAA	-18	NA	69970048	69954445	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_69955750_69955963_69956147_69956577_69956639_69956847_69956947_69957196_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028458	chr14	-	3632	21	NNC	ENSMUSG00000033712.7	novel	3725	21	NA	NA	97	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	38.4373191052654	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGTGAGTCTTTGTAG	NA	False	NA	44	True	AATAAA	-18	NA	70391163	70375616	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377997_70378316_70378462_70379059_70379297_70379387_70379620_70379808_70379981_70380373_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388558_70388722_70388853_70389009_70389125_70389328_70389421_70389821_70389914_70390112_70390207_70391075
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028464	chr14	-	3625	21	NNC	ENSMUSG00000033712.7	novel	3725	21	NA	NA	97	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_8	49.3149064685314	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGTGAGTCTTTGTAG	NA	False	NA	44	True	AATAAA	-18	NA	70391163	70375616	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377994_70378316_70378462_70379059_70379293_70379387_70379620_70379808_70379981_70380373_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388558_70388722_70388853_70389009_70389125_70389328_70389421_70389821_70389914_70390112_70390207_70391075
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028489	chr14	-	2042	9	FSM	ENSMUSG00000000776.14	ENSMUST00000000793.13	2016	9	-24	-2	-24	2	multi-exon	FALSE	canonical	3	137	junction_3	16.2244992218558	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTAAGTGGTTCTGCTCA	1707	False	NA	-5	True	AATAAA	-19	NA	70680911	70676194	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390_70680561_70680772
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028496	chr14	+	1695	8	FSM	ENSMUSG00000033589.5	ENSMUST00000047218.5	1565	8	-128	-2	-25	2	multi-exon	FALSE	canonical	3	225	junction_3	37.0515360886781	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCTCTTCACATCTCAT	6439	False	NA	32	True	AATAAA	-28	NA	70782665	70786375	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_70783179_70783916_70783990_70784369_70784447_70784554_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028499	chr14	+	2884	12	ISM	ENSMUSG00000022096.15	ENSMUST00000163060.2	5278	18	7586	-4	7586	0	3prime_fragment	FALSE	canonical	2	7	junction_11	3.66804381851491	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGTTCCGAGCATTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	70800925	70810988	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr14_+_70801123_70802741_70802824_70803468_70803633_70803749_70803987_70804219_70804386_70804588_70804659_70804941_70805073_70805215_70805336_70805416_70805533_70808817_70808983_70809347_70809477_70809681
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028509	chr14	-	2678	14	NIC	ENSMUSG00000022099.18	novel	5418	16	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	73.4809881622571	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGTTTCTATCCATGC	NA	False	NA	0	True	ATTAAA	-22	NA	70864498	70841109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_-_70842295_70842407_70842489_70842736_70842803_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855678_70855849_70864178
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028521	chr14	-	1738	5	FSM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	-49	0	-49	0	multi-exon	FALSE	canonical	3	21	junction_3	15.3195136998535	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	0	True	AATAAA	-16	NA	70879757	70873642	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_70874464_70875906_70876014_70876241_70876420_70878971_70879009_70879162
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028539	chr14	+	191	1	Intergenic	novelGene_117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATATATCTCCTTACCTA	NA	False	NA	NA	False	NA	NA	NA	70998292	70998483	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_+_70998300_70998500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028546	chr14	+	2168	15	NIC	ENSMUSG00000022106.15	novel	3573	16	NA	NA	-26	7	combination_of_known_junctions	FALSE	canonical	3	22	junction_9	6.89720440261332	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATTGACGAACAACTTCT	NA	False	NA	NA	False	NA	NA	NA	73380405	73420129	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270_73392335_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028552	chr14	-	607	3	Intergenic	novelGene_118	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	46	junction_2	43	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTTAGCTCCGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	73431988	73424808	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_-_73425028_73425702_73425852_73431749
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028562	chr14	+	207	1	Intergenic	novelGene_119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGAGATCAGTTTCTCTA	NA	False	NA	NA	False	NA	NA	NA	73681854	73682061	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_+_73681900_73682100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028576	chr14	+	2143	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	88	-2	-13	2	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGTTATGGGTTTTTT	NA	False	NA	13	True	AATAAA	-16	NA	73790192	73833584	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028591	chr14	+	750	1	Intergenic	novelGene_120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGAATGGTCCTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	74191333	74192083	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_+_74191300_74192100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028656	chr14	+	1738	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	32	-8	-20	8	multi-exon	FALSE	canonical	3	2255	junction_1	40	1222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATATGACGCCATTAATA	6571	False	NA	39	True	AATAAA	-29	NA	76741949	76745213	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_76742282_76742688_76742738_76743856
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028692	chr14	-	1804	7	ISM	ENSMUSG00000022016.18	ENSMUST00000123853.9	9364	12	-58	21103	-58	-17475	5prime_fragment	FALSE	canonical	3	71	junction_2	3.39934634239519	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAATGTAAAAAATCTTCA	NA	False	NA	NA	False	AAGAAA	-42	NA	78774306	78750788	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr14_-_78751761_78752246_78752512_78753762_78753898_78755612_78755661_78756219_78756337_78760030_78760143_78774151
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028700	chr14	-	930	5	FSM	ENSMUSG00000022018.8	ENSMUST00000022595.8	918	5	2	-14	2	14	multi-exon	FALSE	canonical	3	129	junction_2	11.7046999107196	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTTATTTCCGTCAGT	NA	False	NA	3	True	AATAAA	-28	NA	79539083	79526181	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_79526560_79527683_79527747_79529110_79529219_79538154_79538341_79538888
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028705	chr14	-	2038	15	ISM	ENSMUSG00000022020.16	ENSMUST00000022597.15	13223	20	7	17922	7	-2214	5prime_fragment	FALSE	canonical	3	151	junction_9	25.5670387293436	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAGAAGAAGAAGAAGTT	NA	False	NA	NA	False	AAGAAA	-5	NA	79628211	79580630	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr14_-_79580760_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028710	chr14	+	1812	11	FSM	ENSMUSG00000022022.4	ENSMUST00000022600.4	1799	11	-9	-4	-9	4	multi-exon	FALSE	canonical	3	73	junction_10	10.5683489722851	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGCCTACAGAGTTTTT	NA	False	NA	5	True	AATAAA	-16	NA	79635202	79661031	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_79635477_79637131_79637240_79638861_79639288_79640264_79640357_79644016_79644099_79644285_79644394_79649081_79649255_79650426_79650545_79653317_79653455_79656627_79656727_79660836
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028759	chr14	+	2726	12	FSM	ENSMUSG00000022070.8	ENSMUST00000022656.8	2726	12	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_1	51.3357124417381	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTTTCCTTGTTCTGT	NA	False	NA	5	True	AATAAA	-16	NA	99283812	99311976	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028807	chr14	+	188	1	Intergenic	novelGene_121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACACCCTGAGAAAACACAT	NA	False	NA	NA	False	NA	NA	NA	101857571	101857759	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_+_101857600_101857800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028817	chr14	+	899	8	NIC	ENSMUSG00000022111.10	novel	903	9	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_1	1518.39837745338	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTTGTTTTTGCTAC	109	False	NA	22	True	AATAAA	-18	NA	101891421	101933561	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr14_+_101891542_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101928007_101928084_101932594_101932654_101933337
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028837	chr14	+	2420	4	FSM	ENSMUSG00000022125.8	ENSMUST00000022721.8	2445	4	27	-2	27	2	multi-exon	FALSE	canonical	3	248	junction_2	4.96655480858378	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGCATCTTGTATCTTTG	NA	False	NA	8	True	NA	NA	NA	103307678	103315066	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_103307904_103309069_103309236_103310622_103310849_103313263
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028844	chr14	-	3213	5	FSM	ENSMUSG00000022124.16	ENSMUST00000132004.8	2534	5	-29	-650	-5	0	multi-exon	FALSE	canonical	3	39	junction_3	61.6050931336038	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTTGTATTTTTATAAC	9917	False	NA	-4	True	AATAAA	-13	NA	103336440	103318469	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_103320947_103326737_103326910_103329739_103329863_103332772_103332978_103336204
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028877	chr14	+	2381	8	FSM	ENSMUSG00000053253.17	ENSMUST00000181969.8	2532	8	151	0	-29	0	multi-exon	TRUE	canonical	3	271	junction_7	54.1807255433901	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGTATTTCTTGTATT	NA	False	NA	10	True	AATAAA	-17	NA	105496158	105546732	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545319
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028883	chr14	+	405	1	FSM	ENSMUSG00000060143.8	ENSMUST00000073238.7	384	1	0	-21	0	21	mono-exon	FALSE	NA	NA	NA	NA	NA	2835	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGCAAGCATGCAGACAC	NA	False	NA	NA	False	AATAAA	-42	NA	105919261	105919666	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_105919300_105919700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028888	chr14	-	2394	2	FSM	ENSMUSG00000022114.6	ENSMUST00000022709.6	2087	2	-307	0	-307	0	multi-exon	FALSE	canonical	3	119	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGCTTGTTTTGTCTTA	NA	False	NA	-4	True	TATAAA	-30	NA	106134560	106129380	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_106131236_106134021
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028893	chr14	+	1562	1	FSM	ENSMUSG00000022113.7	ENSMUST00000022708.7	3075	1	28	1485	27	-1485	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAGAAACTTATAGTACAT	NA	False	NA	NA	False	NA	NA	NA	106343659	106345221	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_106343700_106345200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028896	chr14	-	5240	1	Intergenic	novelGene_122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGGCTACATTT	NA	False	NA	NA	False	NA	NA	NA	112608909	112603669	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr14_-_112603700_112608900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028902	chr14	+	2134	1	FSM	ENSMUSG00000058126.8	ENSMUST00000072359.8	2147	1	0	13	0	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAAGAAGAAGATGTTCTG	NA	False	NA	NA	False	NA	NA	NA	113552039	113554173	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_113552000_113554200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028941	chr14	+	2627	1	FSM	ENSMUSG00000115684.2	ENSMUST00000227446.2	663	1	-140	-1824	-140	1824	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTGAATGGCATGGGAGA	2553	False	NA	NA	False	AATAAA	-42	NA	119515695	119518322	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_119515700_119518300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028945	chr14	+	2494	9	FSM	ENSMUSG00000022139.18	ENSMUST00000088419.13	4552	9	2	2056	2	15	multi-exon	FALSE	canonical	3	31	junction_3	5.41842920042331	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCACGGTATGAGCTTC	6831	False	NA	NA	False	NA	NA	NA	120513082	120667053	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_120513318_120562205_120562825_120616561_120616727_120622802_120623004_120626311_120626576_120633123_120633178_120633862_120634017_120642049_120642145_120666346
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028977	chr14	+	2208	9	FSM	ENSMUSG00000041765.7	ENSMUST00000039803.7	2139	9	-61	-8	-61	8	multi-exon	FALSE	canonical	3	342	junction_2	40.200862863874	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTTTTATACTTCTCCA	8825	False	NA	24	True	AATAAA	-24	NA	122115970	122258454	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000028991	chr14	+	930	2	FSM	ENSMUSG00000071229.4	ENSMUST00000045976.7	913	2	-19	2	-19	-2	multi-exon	FALSE	canonical	3	25	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCTGTTCTTTGTAACT	NA	False	NA	NA	False	AAGAAA	-1	NA	122272066	122275830	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_122272425_122275258
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029006	chr14	+	1696	3	ISM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	7	29556	7	-29549	5prime_fragment	FALSE	canonical	3	648	junction_1	10.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAATTCACTTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	122419122	122610090	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr14_+_122419194_122548655_122548843_122608652
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029025	chr14	+	2505	24	FSM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	-29	116	-14	0	multi-exon	FALSE	canonical	3	76	junction_1	20.0942015919555	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTAGTTTGCCCTTTTTTC	NA	False	NA	16	True	AATAAA	-19	NA	122771721	123127240	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122938466_122938578_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029034	chr14	+	2485	24	NNC	ENSMUSG00000041650.16	novel	2592	24	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	29.1084277677059	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTAGTTTGCCCTTTTTTC	NA	False	NA	16	True	AATAAA	-19	NA	122771738	123127240	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896197_122901672_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122938466_122938578_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029042	chr14	-	3402	18	FSM	ENSMUSG00000041594.19	ENSMUST00000037726.14	3416	18	14	0	6	0	multi-exon	TRUE	canonical	3	136	junction_13	13.8696352514015	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	4	True	AGTAAA	-26	NA	123220681	123156382	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220583
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029073	chr15	+	2024	1	FSM	ENSMUSG00000077737.3	ENSMUST00000104549.3	81	1	-1749	-194	-1749	194	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGGTGATCTAAGGTA	2258	False	NA	37	True	AATAAA	-18	NA	5146136	5148160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_5146100_5148200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029075	chr15	+	571	4	NNC	ENSMUSG00000041841.9	novel	556	4	NA	NA	-24	1	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	9909.82187304876	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGGTGATCTAAGGTA	2273	False	NA	37	True	AATAAA	-18	NA	5146151	5148160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_5146390_5146768_5146905_5147100_5147186_5148048
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029077	chr15	+	590	4	FSM	ENSMUSG00000041841.9	ENSMUST00000227463.2	556	4	-31	-3	-24	1	multi-exon	FALSE	canonical	3	713	junction_1	9620.00361515294	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGGTGATCTAAGGTA	2273	False	NA	37	True	AATAAA	-18	NA	5146151	5148160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_5146409_5146768_5146905_5147100_5147186_5148048
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029096	chr15	+	1033	1	FSM	ENSMUSG00000067547.7	ENSMUST00000146631.2	819	1	-67	-147	-67	147	mono-exon	FALSE	NA	NA	NA	NA	NA	764	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTATTCCAGAAAGATTG	NA	False	NA	NA	False	AATAAA	-41	NA	6683336	6684369	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_6683300_6684400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029104	chr15	-	2150	18	FSM	ENSMUSG00000039828.8	ENSMUST00000045766.8	2126	18	-18	-6	0	-1	multi-exon	TRUE	canonical	3	158	junction_1	88.3053055575902	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTCCTTTCTGTTATG	NA	False	NA	0	True	AATAAA	-20	NA	8128693	7902536	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_7902735_7913761_7913925_7915043_7915161_7916809_7916890_7918556_7918658_7949967_7950107_7951549_7951635_7953688_7953789_8006448_8006624_8049069_8049147_8065211_8065366_8072191_8072326_8075912_8075973_8108643_8108849_8111945_8112067_8123159_8123244_8128439_8128506_8128602
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029109	chr15	+	728	1	FSM	ENSMUSG00000116090.2	ENSMUST00000229131.2	586	1	-27	-115	-27	115	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGCCACAGTCATGAAG	NA	False	NA	NA	False	AAGAAA	-45	NA	8004528	8005256	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_8004500_8005300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029112	chr15	-	1702	4	FSM	ENSMUSG00000039828.8	ENSMUST00000227371.2	1130	4	0	-572	0	572	multi-exon	FALSE	canonical	3	289	junction_1	79.3823378060608	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGCTATGTTGTCTCAT	NA	False	NA	3	True	NA	NA	NA	8128693	8121138	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_8122600_8123159_8123244_8128439_8128506_8128602
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029127	chr15	+	211	1	Intergenic	novelGene_123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTCCTAGGACAGCCAG	NA	False	NA	NA	False	NA	NA	NA	8214203	8214414	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_8214200_8214400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029148	chr15	+	3345	12	NIC	ENSMUSG00000022253.18	novel	4135	13	NA	NA	0	307	combination_of_known_junctions	FALSE	canonical	3	231	junction_7	43.3900243705397	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTTTCTTATTTCCTA	6	True	NA	3	True	AATAAA	-23	NA	9071339	9110255	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_+_9071846_9083349_9083439_9084241_9084331_9085804_9085887_9091254_9091339_9092802_9092940_9096102_9096182_9100194_9100291_9103070_9103127_9103413_9103468_9106816_9106941_9108306
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029164	chr15	-	1393	3	FSM	ENSMUSG00000054115.13	ENSMUST00000191316.2	1391	3	-2	0	-2	0	multi-exon	TRUE	canonical	3	181	junction_1	23	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTAAAAACCTTGCGTG	NA	False	NA	NA	False	NA	NA	NA	9140441	9127134	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_9128085_9139518_9139791_9140270
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029169	chr15	-	454	2	Antisense	novelGene_ENSMUSG00000049152.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	40	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCGTCTTGGCTACATTT	8	False	NA	2	True	NA	NA	NA	9357162	9354832	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr15_-_9355049_9356924
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029172	chr15	-	2330	1	Intergenic	novelGene_124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCGTCTTGGCTACATTT	8	False	NA	2	True	NA	NA	NA	9357162	9354832	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_-_9354800_9357200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029185	chr15	-	2685	10	FSM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	-18	-3	-18	3	multi-exon	FALSE	canonical	3	2074	junction_1	190.855449147086	1018	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGGCTTTTTTTTTTTTCG	NA	False	NA	NA	False	AATAAA	-28	NA	10486051	10474861	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029223	chr15	+	1577	5	FSM	ENSMUSG00000022244.8	ENSMUST00000070877.7	2577	5	-19	1019	-19	600	multi-exon	FALSE	canonical	3	110	junction_2	9.36416040016402	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCAGTGGTTTTAAGTT	30	False	NA	35	True	AATAAA	-45	NA	10981822	10995693	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_10982140_10983435_10983580_10984771_10984933_10988844_10989032_10994925
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029228	chr15	-	2683	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	-33	1355	-33	349	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTCTGTCCTCACGGTTA	NA	False	NA	-1	True	AATAAA	-22	NA	11399784	11383741	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029239	chr15	-	2571	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	21	287	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	759.760872467998	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGGAGAAAACAGAGTT	NA	False	NA	-21	True	AATAAA	-16	NA	11399730	11383803	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387782_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029252	chr15	-	688	5	NNC	ENSMUSG00000022205.16	novel	3372	5	NA	NA	6	66	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_4	3424.13773817585	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTACCCTTTTTTGAT	861	False	NA	79	True	AATAAA	-22	NA	11996092	11984060	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996032
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029253	chr15	-	677	5	NNC	ENSMUSG00000022205.16	novel	3372	5	NA	NA	7	66	at_least_one_novel_splicesite	FALSE	canonical	3	110	junction_3	3385.52362087462	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTACCCTTTTTTGAT	862	False	NA	79	True	AATAAA	-22	NA	11996091	11984060	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_11984384_11986541_11986651_11991044_11991162_11993874_11993948_11996036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029280	chr15	+	1279	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	-74	-203	-74	203	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCATAGAGAGTCAGAGAC	88	False	NA	NA	False	AATAAA	-37	NA	12574900	12576179	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_12574900_12576200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029297	chr15	+	4488	35	FSM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	-11	42	-11	-41	multi-exon	FALSE	canonical	3	495	junction_3	95.4793814587056	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTTGTTGTCTTAATGATT	42	False	NA	-12	True	AATAAA	-16	NA	12824937	12935335	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_12825025_12826150_12826254_12827312_12827379_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029315	chr15	-	5186	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTTTCTCGTTGGTGATT	9795	False	NA	NA	False	NA	NA	NA	22705095	22699816	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr15_-_22704588_22704680
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029320	chr15	-	3136	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	20.5	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9795	False	NA	NA	False	NA	NA	NA	22705095	22699818	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr15_-_22700670_22702717_22704588_22704680
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029329	chr15	-	5277	1	Intergenic	novelGene_125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	307	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9795	False	NA	NA	False	NA	NA	NA	22705095	22699818	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_-_22699800_22705100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029343	chr15	-	2747	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAGGATCTAGACAGGAAA	9795	False	NA	NA	False	NA	NA	NA	22705095	22702305	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr15_-_22704588_22704630
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029348	chr15	+	2714	2	Intergenic	novelGene_126	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	56	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGCTGGGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	22702334	22705095	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_22704606_22704652
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029363	chr15	+	5826	23	NIC	ENSMUSG00000022272.18	novel	5880	21	NA	NA	227	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	149.870088371328	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGCTTTCCTTGAGTAG	56	False	NA	16	True	AATAAA	-17	NA	25753291	25813759	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_+_25753407_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029374	chr15	+	6020	23	NIC	ENSMUSG00000022272.18	novel	1030	7	NA	NA	14	1	combination_of_known_junctions	FALSE	canonical	3	400	junction_1	95.5578769711826	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCTTTCCTTGAGTAGT	4	True	NA	17	True	AATAAA	-18	NA	25774086	25813760	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029380	chr15	+	1958	9	FSM	ENSMUSG00000022270.17	ENSMUST00000022881.15	3248	9	-35	1325	-35	8	multi-exon	FALSE	canonical	3	25	junction_6	4.98591766879478	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCAACCCCCATCAAACTA	14	True	NA	NA	False	GGGGCT	-38	NA	25843230	25972448	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_25843699_25889566_25889674_25895198_25895230_25964309_25964437_25966718_25966804_25968492_25968631_25969881_25969947_25970183_25970311_25971638
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029393	chr15	-	1510	7	FSM	ENSMUSG00000046034.9	ENSMUST00000059662.8	1491	7	-14	-5	-14	5	multi-exon	FALSE	canonical	3	220	junction_2	23.0771652408946	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTATTTGATTTTTAT	NA	False	NA	0	True	AATGAA	-45	NA	27630793	27605999	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_27606548_27608677_27608948_27611597_27611724_27616409_27616554_27619614_27619710_27623367_27623445_27630543
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029440	chr15	+	1688	1	Intergenic	novelGene_127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATTCGAATTTCAAGGGT	142	False	NA	NA	False	ATTAAA	-40	NA	33221527	33223215	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_33221500_33223200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029444	chr15	+	2934	1	FSM	ENSMUSG00000115318.2	ENSMUST00000227474.2	2906	1	-8	-20	-8	20	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTAAAACTTTACCTGCT	NA	False	NA	NA	False	NA	NA	NA	33831585	33834519	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_33831600_33834500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029462	chr15	+	1797	7	FSM	ENSMUSG00000022257.5	ENSMUST00000022867.5	1902	7	105	0	-16	0	multi-exon	FALSE	canonical	3	358	junction_4	34.9698282650757	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGCTCCGCTGACT	95	False	NA	NA	False	ATTAAA	-22	NA	34238278	34284448	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_34238569_34258826_34258939_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029469	chr15	-	465	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	3	777	junction_4	1906.75842400132	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	382	False	NA	-20	True	AATAAA	-27	NA	34443347	34440650	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443312
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029476	chr15	-	994	6	FSM	ENSMUSG00000022323.12	ENSMUST00000022946.6	1004	6	9	1	9	-1	multi-exon	FALSE	canonical	3	250	junction_4	17.7245592328836	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTTTTTAATTTTGTT	NA	False	NA	-11	True	AATAAA	-20	NA	34495392	34484167	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_34484682_34485745_34485802_34486756_34486826_34487887_34487943_34488719_34488826_34495198
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029479	chr15	+	3325	16	FSM	ENSMUSG00000022325.15	ENSMUST00000079028.6	3275	16	-38	-12	-19	1	multi-exon	FALSE	canonical	3	39	junction_3	10.1552394796425	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATTTGTTTTTAATCTG	56	False	NA	10	True	ATTAAA	-20	NA	34495430	34530795	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_34495562_34499434_34499579_34502456_34502625_34505104_34505281_34506564_34506814_34508265_34508354_34508749_34508938_34509908_34510166_34510477_34510572_34512059_34512172_34512877_34512998_34515987_34516104_34517972_34518165_34526308_34526464_34529028_34529377_34530008
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029515	chr15	+	480	4	FSM	ENSMUSG00000045996.13	ENSMUST00000180159.8	489	4	15	-6	-8	3	multi-exon	FALSE	canonical	3	328	junction_3	234.864973028239	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTATTCAATGTCTTGTT	124	False	NA	NA	False	ATTAAA	-18	NA	36174170	36177159	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_36174228_36175132_36175203_36175529_36175623_36176899
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029528	chr15	-	4290	10	FSM	ENSMUSG00000022280.10	ENSMUST00000022890.10	4277	10	-13	0	-13	0	multi-exon	FALSE	canonical	3	142	junction_2	15.6946165182307	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTGTGCCCAGGAAT	NA	False	NA	1	True	AATAAA	-17	NA	36283306	36240078	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_36242212_36244232_36244377_36245561_36245776_36247267_36247430_36247896_36248012_36253146_36253310_36254528_36254674_36260160_36260370_36265421_36266178_36283057
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029533	chr15	+	186	1	Intergenic	novelGene_128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCATAGTTCACCCAGTCA	NA	False	NA	NA	False	NA	NA	NA	36459656	36459842	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_36459700_36459800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029537	chr15	-	2495	5	FSM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	16	-2	-15	2	multi-exon	FALSE	canonical	3	250	junction_4	35.6195171219375	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGGCCATTTTCTTAGT	NA	False	NA	NA	False	AATAAA	-20	NA	36496950	36477811	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_36479620_36484126_36484286_36485940_36486274_36496022_36496140_36496872
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029542	chr15	-	2467	5	NNC	ENSMUSG00000048307.9	novel	2509	5	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	122.678441463853	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCATCGGCCATTTTCTTA	NA	False	NA	NA	False	AATAAA	-18	NA	36496927	36477813	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_36479620_36484126_36484286_36485940_36486271_36496022_36496140_36496872
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029549	chr15	-	368	1	Genic_Genomic	ENSMUSG00000022283.16	novel	NA	NA	NA	NA	1399	1	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	9263	False	NA	-6	True	AATAAA	-17	NA	36596271	36595903	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr15_-_36595900_36596300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029559	chr15	-	2486	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	41	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	1581.86815415914	35	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGAAACTTTGAACCTT	377	False	NA	NA	False	AATAAA	-10	NA	36609217	36596226	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603098_36603230_36605685_36605802_36605987_36606182_36608557
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029561	chr15	-	2499	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	41	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	1559.13571197871	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGAAACTTTGAACCTT	377	False	NA	NA	False	AATAAA	-10	NA	36609217	36596226	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_36596344_36596802_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029565	chr15	-	2539	15	NIC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	41	combination_of_known_junctions	FALSE	canonical	3	83	junction_1	1540.43655354909	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGAAACTTTGAACCTT	377	False	NA	NA	False	AATAAA	-10	NA	36609217	36596226	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_36596344_36596762_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029570	chr15	-	2499	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	41	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1582.11551895117	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGAAACTTTGAACCTT	377	False	NA	NA	False	AATAAA	-10	NA	36609217	36596226	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600832_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029586	chr15	-	2489	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	40	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	1580.48992662505	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGGAAACTTTGAACCT	377	False	NA	NA	False	AATAAA	-9	NA	36609217	36596227	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605992_36606182_36608557
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029594	chr15	-	2442	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	1580.90175926557	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAATATTATGAAAAAAA	377	False	NA	NA	False	AAGAAA	-22	NA	36609217	36596277	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605687_36605802_36605987_36606182_36608557
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029607	chr15	-	3524	7	FSM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	273	-509	266	509	multi-exon	FALSE	canonical	3	85	junction_6	1526.66484716049	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGCTTCACGTCTGTTT	12	True	NA	0	True	AATAAA	-35	NA	36794509	36770504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793920_36794388
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029613	chr15	-	2817	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110361.8	2285	6	267	-799	267	0	multi-exon	FALSE	canonical	3	223	junction_5	1591.90916826306	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	13	True	NA	-39	True	NA	NA	NA	36794508	36771013	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36794388
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029655	chr15	-	579	2	Genic_Genomic	ENSMUSG00000085442.2	novel	466	1	NA	NA	-39314	76	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATTGGGAACAAAACACCC	1661	False	NA	NA	False	AATATA	-42	NA	37983350	37943494	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr15_-_37944053_37983329
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029720	chr15	-	714	2	ISM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	72601	0	8382	0	3prime_fragment	FALSE	canonical	3	216	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGTGTCTGAGTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	39648265	39646092	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr15_-_39646506_39647964
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029728	chr15	+	288	3	Intergenic	novelGene_129	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	63	junction_1	14.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTGTCTTGCCTTAATTC	NA	False	NA	12	True	NA	NA	NA	41210839	41215818	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_41210883_41214473_41214592_41215691
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029736	chr15	+	2127	9	ISM	ENSMUSG00000022307.17	ENSMUST00000170127.9	4346	14	0	34875	0	-857	5prime_fragment	FALSE	canonical	3	180	junction_7	41.0662574384372	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATTGCACAAAAGCAGAT	NA	False	NA	NA	False	AAAAAG	-12	NA	41652336	41689568	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr15_+_41652629_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029737	chr15	+	4347	14	FSM	ENSMUSG00000022307.17	ENSMUST00000170127.9	4346	14	0	-1	0	0	multi-exon	FALSE	canonical	3	180	junction_7	35.9990137931977	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTGGATTTTTTCAAT	NA	False	NA	NA	False	AATAAA	-21	NA	41652336	41724444	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_41652629_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285_41689449_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029745	chr15	+	223	1	Intergenic	novelGene_130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACATACATGTCTTGCCT	NA	False	NA	NA	False	TTTAAA	-12	NA	41810477	41810700	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_41810500_41810700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029756	chr15	+	1262	11	FSM	ENSMUSG00000022337.8	ENSMUST00000022962.8	1231	11	-16	-15	-16	15	multi-exon	FALSE	canonical	3	590	junction_9	74.0384359640315	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTTTGTTTTATTGGA	NA	False	NA	25	True	AATAAA	-35	NA	43340608	43391174	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_43340722_43355565_43355680_43358135_43358201_43358559_43358646_43360456_43360515_43371040_43371127_43371257_43371318_43374210_43374293_43375095_43375207_43377140_43377246_43390792
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029776	chr15	+	657	5	FSM	ENSMUSG00000022338.9	ENSMUST00000060652.5	3000	5	-19	2362	0	0	multi-exon	FALSE	canonical	3	627	junction_1	138.867742834684	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACTCTGTTTATTACTG	9616	False	NA	40	True	AATAAA	-42	NA	44291487	44299290	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297294_44297370_44299007
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029789	chr15	+	200	1	Intergenic	novelGene_131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTATTATATCTAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	50413666	50413866	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_50413700_50413900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029822	chr15	+	1303	2	FSM	ENSMUSG00000068522.5	ENSMUST00000090025.5	1348	2	45	0	45	0	multi-exon	FALSE	canonical	3	258	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTTTCTAGTGGTCAT	NA	False	NA	16	True	AATAAA	-27	NA	51903547	51909118	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_51903927_51908194
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029828	chr15	+	211	1	Intergenic	novelGene_132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACGGCATTTGTGCATCC	NA	False	NA	NA	False	NA	NA	NA	52985796	52986007	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_52985800_52986000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029830	chr15	-	1334	9	FSM	ENSMUSG00000022422.14	ENSMUST00000023059.13	1324	9	-4	-6	-4	6	multi-exon	FALSE	canonical	3	218	junction_7	27.4268914571083	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTGACTTCTTTAAGAAT	NA	False	NA	1	True	AATAAA	-23	NA	54953891	54939488	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029846	chr15	-	828	7	FSM	ENSMUSG00000022370.14	ENSMUST00000172387.8	1223	7	396	-1	-3	1	multi-exon	FALSE	canonical	3	905	junction_4	55.6070039553372	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATGTCTCTTACTGAAAA	NA	False	NA	1	True	AATAAA	-21	NA	55420748	55397488	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55411537_55411632_55418715_55418840_55420653
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029848	chr15	-	730	6	FSM	ENSMUSG00000022370.14	ENSMUST00000164542.8	730	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	366.126754007407	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55420745	55397489	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55418715_55418840_55420653
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029862	chr15	+	5234	1	Intergenic	novelGene_133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGTCTTGGCTACATT	NA	False	NA	NA	False	NA	NA	NA	55735055	55740289	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_55735100_55740300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029882	chr15	+	3284	21	FSM	ENSMUSG00000022364.15	ENSMUST00000022992.13	3311	21	33	-6	-2	0	multi-exon	FALSE	canonical	3	200	junction_2	36.9403234961471	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAACTGTCTTCTTTGCT	NA	False	NA	14	True	AATAAA	-21	NA	57775627	57833463	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029889	chr15	+	3460	22	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_14	77.7079245762626	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	9	True	AATAAA	-16	NA	57775637	57833458	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816887_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57825464_57825660_57827199_57827321_57831304_57831401_57833119
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029899	chr15	+	551	2	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	10962	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAACTGTCTTCTTTGCT	NA	False	NA	14	True	AATAAA	-21	NA	57832770	57833463	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_57832978_57833119
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029923	chr15	+	212	1	Intergenic	novelGene_134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTAGGACCTGCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	57954921	57955133	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_57954900_57955100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029949	chr15	-	862	11	NIC	ENSMUSG00000050891.11	novel	915	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_8	26.3417918904542	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805587	58772822	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58798284_58798335_58800532_58800599_58805527
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029956	chr15	+	704	4	FSM	ENSMUSG00000022354.5	ENSMUST00000022980.5	704	4	13	-13	13	13	multi-exon	FALSE	canonical	3	3308	junction_3	178.75557489364	1316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGTTCTTCCAAGGTTA	2829	False	NA	26	True	AATAAA	-27	NA	58805617	58811350	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_58805788_58808116_58808310_58809200_58809315_58811123
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029962	chr15	-	774	1	ISM	ENSMUSG00000022353.11	ENSMUST00000080371.8	4938	15	139982	0	11573	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCAGGTCTCCTTCAGA	9781	False	NA	NA	False	AATAAA	-19	NA	58813856	58813082	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr15_-_58813100_58813900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029965	chr15	-	5060	14	NIC	ENSMUSG00000022353.11	novel	4938	15	NA	NA	-120	-2	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	8.88386610227084	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCTCAGGTCTCCTTCA	2609	False	NA	NA	False	AATAAA	-17	NA	58953974	58813084	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_58815980_58817210_58817374_58817694_58817869_58819174_58819370_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000029987	chr15	+	833	2	Genic_Genomic	ENSMUSG00000025922.10	novel	810	1	NA	NA	-11	78	multi-exon	TRUE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGAATAGCCACAACCAG	NA	False	NA	NA	False	AATAAA	-34	NA	59082745	59083644	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr15_+_59082787_59082852
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030014	chr15	+	1181	8	FSM	ENSMUSG00000059586.11	ENSMUST00000227173.2	1122	8	-44	-15	-6	3	multi-exon	FALSE	canonical	3	123	junction_4	348.219025608766	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCATGGTCCTGTCTGCTG	NA	False	NA	19	True	AATAAA	-20	NA	59246089	59473536	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59368625_59368704_59463545_59463647_59463986_59464094_59473188
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030025	chr15	-	5121	2	FSM	ENSMUSG00000072568.5	ENSMUST00000100635.5	5565	2	122	322	122	-322	multi-exon	FALSE	canonical	3	40	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCTTCCTCTTTACTCTG	NA	False	NA	-1	True	AATAAA	-21	NA	60696807	60691164	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_60695841_60696362
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030029	chr15	+	2352	3	FSM	ENSMUSG00000022346.18	ENSMUST00000159327.2	2186	3	-180	14	-7	10	multi-exon	FALSE	canonical	3	8	junction_1	7	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTGGGCCAACTTGTGTT	NA	False	NA	NA	False	AATAAA	-17	NA	61857232	61862209	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_61857801_61859358_61860128_61861194
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030030	chr15	+	2358	3	FSM	ENSMUSG00000022346.18	ENSMUST00000161976.8	2338	3	-7	-13	-7	-11	multi-exon	FALSE	canonical	3	22	junction_2	2	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGCCAACTTGTGTTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	61857232	61862212	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_61857801_61859355_61860128_61861194
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030069	chr15	-	1920	12	FSM	ENSMUSG00000022378.15	ENSMUST00000164532.3	1770	12	-150	0	-150	0	multi-exon	FALSE	canonical	3	316	junction_11	247.062410558028	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTGGTTTACTGAG	8589	False	NA	-4	True	AATAAA	-22	NA	63869968	63802790	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63869746
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030122	chr15	-	2894	16	NNC	ENSMUSG00000005125.14	novel	2889	16	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_13	11.8122347118947	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTCTTTTCCTCTCC	NA	False	NA	0	True	AATAAA	-18	NA	66841490	66801166	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280_66818402_66820227_66820334_66831206_66831247_66832320_66832402_66841352
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030132	chr15	+	572	1	FSM	ENSMUSG00000068397.5	ENSMUST00000089785.5	483	1	-37	-52	-37	52	mono-exon	FALSE	NA	NA	NA	NA	NA	414	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTATTTTCATAATTGC	NA	False	NA	NA	False	AATAAA	-35	NA	68181630	68182202	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_68181600_68182200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030139	chr15	+	885	3	FSM	ENSMUSG00000068391.9	ENSMUST00000089765.9	871	3	6	-20	6	20	multi-exon	FALSE	canonical	3	479	junction_2	8	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGGTTCTTTGTGAAAT	NA	False	NA	27	True	ATTAAA	-38	NA	72962246	72965944	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_72962433_72964681_72964809_72965372
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030177	chr15	-	3054	3	FSM	ENSMUSG00000022602.15	ENSMUST00000110009.4	3054	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	19	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTATGTGCCATTTCT	NA	False	NA	0	True	AATAAA	-14	NA	74544419	74540931	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_74541843_74542028_74542166_74542413
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030180	chr15	-	3178	3	FSM	ENSMUSG00000022602.15	ENSMUST00000023268.14	3055	3	-123	0	-121	0	multi-exon	FALSE	canonical	3	30	junction_2	11.5	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTATGTGCCATTTCT	NA	False	NA	0	True	AATAAA	-14	NA	74544540	74540931	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_74541843_74542028_74542169_74542413
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030186	chr15	-	3363	2	FSM	ENSMUSG00000046380.4	ENSMUST00000050234.4	5853	2	232	2258	232	-2258	multi-exon	FALSE	canonical	3	23	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGTCATGATTCTTCA	NA	False	NA	2	True	NA	NA	NA	74581152	74576407	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_74579714_74581095
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030190	chr15	-	3308	1	NIC	ENSMUSG00000046380.4	novel	5853	2	NA	NA	1669	-2258	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGTCATGATTCTTCA	NA	False	NA	2	True	NA	NA	NA	74579715	74576407	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_74576400_74579700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030255	chr15	+	196	1	Intergenic	novelGene_135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTTTCTCTGGAGAATA	NA	False	NA	NA	False	NA	NA	NA	75722443	75722639	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_75722400_75722600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030261	chr15	-	936	4	Intergenic	novelGene_136	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	55	junction_3	10.1434160364686	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTAATCTGGCCTAT	NA	False	NA	0	True	NA	NA	NA	75754364	75741421	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_-_75741955_75743124_75743208_75744217_75744419_75754245
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030270	chr15	-	933	7	FSM	ENSMUSG00000055762.17	ENSMUST00000109972.9	1624	7	6	685	1	3	multi-exon	FALSE	canonical	3	464	junction_5	1042.33482571048	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTCTTGTGTTACTTGGT	NA	False	NA	-3	True	ATTAAA	-19	NA	75781177	75767333	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773105_75781093
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030280	chr15	-	1028	9	NIC	ENSMUSG00000055762.17	novel	2842	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_5	1349.65903101487	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781146	75767336	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75769074_75769132_75772539_75772612_75772980_75773105_75781093
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030313	chr15	+	2409	2	FSM	ENSMUSG00000050846.10	ENSMUST00000037260.8	2486	2	80	-3	80	3	multi-exon	FALSE	canonical	3	106	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGTAATTGGCATATCC	NA	False	NA	13	True	AATAAA	-19	NA	75812880	75821252	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_75813009_75818971
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030338	chr15	-	1863	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	-34	-8	-22	0	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTGTGTCTGAAATTGG	NA	False	NA	0	True	CATAAA	-25	NA	75952795	75942030	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030346	chr15	-	1910	12	FSM	ENSMUSG00000002524.18	ENSMUST00000100527.13	1881	12	-29	0	-18	0	multi-exon	FALSE	canonical	3	225	junction_7	445.848082194703	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTGTGTCTGAAATTGG	NA	False	NA	0	True	CATAAA	-25	NA	75952791	75942030	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75952698
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030353	chr15	-	1820	11	NNC	ENSMUSG00000002524.18	novel	1821	11	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	121	junction_10	401.11844884024	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAAGTCCCTGTGTCTGA	NA	False	NA	-6	True	CATAAA	-19	NA	75952761	75942036	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949549_75952698
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030365	chr15	-	4203	30	NIC	ENSMUSG00000022565.16	novel	15001	32	NA	NA	12	3702	combination_of_known_splicesites	TRUE	canonical	0	0	junction_6	13.3521765383601	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCCTGGGGCCGTGTGGCT	1040	False	NA	NA	False	NA	NA	NA	76079898	76067108	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_76067209_76067290_76067396_76067561_76067646_76067722_76068080_76068166_76068306_76069510_76069690_76069804_76069967_76070053_76070238_76070340_76070468_76070559_76070715_76070810_76070964_76071836_76071963_76072178_76072275_76072372_76072478_76072663_76072826_76072907_76072986_76073070_76073381_76073456_76073612_76074301_76074396_76074658_76074787_76075048_76075145_76075216_76075337_76075441_76075549_76075619_76075736_76076380_76076548_76077420_76077514_76077609_76077688_76078540_76078631_76078950_76079013_76079623
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030474	chr15	+	2010	6	FSM	ENSMUSG00000022554.8	ENSMUST00000023213.8	1993	6	0	-17	0	17	multi-exon	FALSE	canonical	3	77	junction_1	14.4858551697855	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGATTCTCCTGCGTGTTCT	3544	False	NA	NA	False	NA	NA	NA	76253097	76255654	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_76253770_76253851_76253953_76254055_76254155_76254361_76254454_76254531_76254655_76254731
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030538	chr15	-	2108	7	FSM	ENSMUSG00000022559.9	ENSMUST00000229813.2	2091	7	-10	-7	-10	-2	multi-exon	TRUE	canonical	3	158	junction_6	11.5325625946708	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATTTATTTATTATAT	NA	False	NA	NA	False	AATAAA	-19	NA	76422956	76419922	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030541	chr15	-	1729	9	FSM	ENSMUSG00000022559.9	ENSMUST00000023219.9	1710	9	-21	2	-10	-2	multi-exon	FALSE	canonical	3	128	junction_8	22.8988946239769	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATTTATTTATTATAT	NA	False	NA	NA	False	AATAAA	-19	NA	76422956	76419922	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116_76422276_76422524
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030571	chr15	+	2006	15	FSM	ENSMUSG00000022550.19	ENSMUST00000162503.8	2040	15	34	0	3	0	multi-exon	FALSE	canonical	3	114	junction_10	17.9268638913668	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTTTGTGTTTTAT	3136	False	NA	NA	False	AAGAAA	-1	NA	76460591	76480016	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030615	chr15	-	2063	11	FSM	ENSMUSG00000063354.8	ENSMUST00000073428.7	2063	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	124.203099800287	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8666	False	NA	-2	True	AATAAA	-21	NA	76501048	76496582	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030619	chr15	-	2269	12	FSM	ENSMUSG00000063354.8	ENSMUST00000230977.2	2750	12	489	-8	-47	0	multi-exon	FALSE	canonical	3	334	junction_11	41.2272476696326	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8619	False	NA	-2	True	AATAAA	-21	NA	76501095	76496582	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030638	chr15	-	4265	26	FSM	ENSMUSG00000059323.15	ENSMUST00000168185.8	4235	26	-28	-2	-28	2	multi-exon	FALSE	canonical	3	178	junction_21	25.6881606970994	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCAGCTCTCTGCGAA	NA	False	NA	1	True	AATAAA	-18	NA	76524186	76510435	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76521526_76522051_76522167_76522241_76522414_76522671_76522802_76523039_76523224_76523647_76523791_76523877_76523974_76524053
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030656	chr15	-	1270	1	Genic_Genomic	ENSMUSG00000033837.6	novel	NA	NA	NA	NA	704	396	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAAGTCTGGTATTGGGG	NA	False	NA	-4	True	AGTAAA	-20	NA	76553298	76552028	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr15_-_76552000_76553300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030664	chr15	+	2654	11	FSM	ENSMUSG00000033819.17	ENSMUST00000037551.15	2692	11	38	0	6	0	multi-exon	FALSE	canonical	3	82	junction_1	16.1864140562386	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCCATGTGTCTCACT	NA	False	NA	22	True	GATAAA	-17	NA	76555852	76579119	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_76555963_76574371_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030698	chr15	-	1754	3	FSM	ENSMUSG00000116138.2	ENSMUST00000036247.10	1754	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	1	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTATTGACTTTAAATGA	9309	False	NA	-4	True	ATTAAA	-23	NA	76608040	76605664	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_76607184_76607370_76607420_76607854
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030733	chr15	+	1027	2	FSM	ENSMUSG00000055041.9	ENSMUST00000068407.6	1037	2	10	0	10	0	multi-exon	TRUE	canonical	3	114	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTATTCTATTAGGGAA	NA	False	NA	NA	False	ATTAAA	-23	NA	76784119	76785505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_76784193_76784551
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030735	chr15	+	1040	2	FSM	ENSMUSG00000055041.9	ENSMUST00000109793.3	920	2	-6	-114	-6	0	multi-exon	FALSE	canonical	3	59	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTATTCTATTAGGGAA	NA	False	NA	NA	False	ATTAAA	-23	NA	76784129	76785505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_76784216_76784551
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030776	chr15	+	203	1	Intergenic	novelGene_137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTATCAGCCCCTACAAAC	NA	False	NA	NA	False	NA	NA	NA	77717119	77717322	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_77717100_77717300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030794	chr15	-	2213	15	FSM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	-309	-5	-309	5	multi-exon	FALSE	canonical	3	1461	junction_9	114.082520258677	2086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGCTCCCGTTGTGAT	2436	False	NA	-6	True	AATAAA	-29	NA	77855322	77843192	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030807	chr15	-	1915	15	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	-15	-2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_9	451.105535414533	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTCGTCCTGTGCTCCCG	2730	False	NA	-13	True	AATAAA	-22	NA	77855028	77843199	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850334_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030826	chr15	+	1480	6	FSM	ENSMUSG00000033287.18	ENSMUST00000159771.8	986	6	-34	-460	0	0	multi-exon	FALSE	canonical	3	32	junction_5	37.5819105421744	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTTCTCTGGGCCACT	NA	False	NA	24	True	AATAAA	-31	NA	78312827	78323503	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78322686
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030846	chr15	-	1895	8	FSM	ENSMUSG00000018169.13	ENSMUST00000018313.6	1865	8	-29	-1	-29	1	multi-exon	FALSE	canonical	3	144	junction_5	11.4749060731561	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTCCAGCTTCCTGCTA	NA	False	NA	-3	True	ATTAAA	-18	NA	78657704	78640080	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_78640845_78641496_78641583_78643392_78643559_78645005_78645092_78648514_78648669_78651017_78651121_78651341_78651391_78657217
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030859	chr15	+	2549	3	FSM	ENSMUSG00000049521.3	ENSMUST00000059619.3	2560	3	16	-5	16	5	multi-exon	FALSE	canonical	3	20	junction_1	1.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTTGGGGAAAAGCACAGA	NA	False	NA	NA	False	AATAAA	-25	NA	78726839	78735102	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_78726926_78731294_78732020_78733364
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030882	chr15	+	2672	17	NNC	ENSMUSG00000033128.10	novel	3034	17	NA	NA	-3	0	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_1	120.328976144568	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTGCTCTTGTCACCCT	NA	False	NA	18	True	AATAAA	-18	NA	78761747	78778785	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_78761818_78765241_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063_78770145_78772310_78772449_78772617_78772700_78773202_78773311_78773915_78774069_78775636_78775702_78776113_78776287_78776652_78776841_78777366_78777537_78777738_78777850_78777933
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030883	chr15	+	2673	17	NNC	ENSMUSG00000033128.10	novel	3034	17	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_13	123.017767390528	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTGCTCTTGTCACCCT	NA	False	NA	18	True	AATAAA	-18	NA	78761747	78778785	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_78761818_78765237_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063_78770145_78772310_78772449_78772617_78772700_78773202_78773311_78773915_78774069_78775636_78775702_78776113_78776284_78776652_78776841_78777366_78777537_78777738_78777850_78777933
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030904	chr15	+	2553	18	FSM	ENSMUSG00000022436.17	ENSMUST00000001226.11	2375	18	-173	-5	-38	1	multi-exon	FALSE	canonical	3	356	junction_17	50.4832700370451	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAACTGGCCAAACGAAAAC	4360	False	NA	88	True	AATAAA	-21	NA	78783929	78796252	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78795538
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030916	chr15	+	2486	18	NNC	ENSMUSG00000022436.17	novel	2375	18	NA	NA	26	1	intron_retention	FALSE	canonical	0	0	junction_3	116.898648912838	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAACTGGCCAAACGAAAAC	4424	False	NA	88	True	AATAAA	-21	NA	78783993	78796252	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_78784162_78785345_78785389_78785598_78785701_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78795538
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030918	chr15	+	2449	18	NNC	ENSMUSG00000022436.17	novel	2375	18	NA	NA	26	1	intron_retention	FALSE	canonical	3	13	junction_3	114.145690914398	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAACTGGCCAAACGAAAAC	4424	False	NA	88	True	AATAAA	-21	NA	78783993	78796252	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_78784162_78785345_78785389_78785598_78785704_78786794_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78795538
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030931	chr15	+	2026	2	FSM	ENSMUSG00000116165.2	ENSMUST00000089378.5	2001	2	-24	-1	-24	1	multi-exon	FALSE	canonical	3	228	junction_1	0	567	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTGTGTGTGTGCCT	NA	False	NA	25	True	AATAAA	-19	NA	78798094	78803718	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_78798732_78802329
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030983	chr15	-	1945	8	FSM	ENSMUSG00000033055.13	ENSMUST00000040676.11	1904	8	-43	2	-35	-2	multi-exon	FALSE	canonical	3	102	junction_6	6.03391773769796	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTGTTTTTTGTGTTTT	NA	False	NA	-2	True	NA	NA	NA	78947128	78937295	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_78938285_78938695_78938804_78939491_78939617_78939694_78939743_78940213_78940286_78942154_78942254_78945363_78945412_78946672
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000030991	chr15	+	1956	13	FSM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	-13	-1	-13	1	multi-exon	FALSE	canonical	3	1651	junction_4	129.272537257102	1210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGTCTCATTATTATG	NA	False	NA	31	True	AGTAAA	-21	NA	78959365	78978606	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031028	chr15	+	1982	13	FSM	ENSMUSG00000068206.14	ENSMUST00000018295.14	1977	13	-5	0	-5	0	multi-exon	FALSE	canonical	3	173	junction_9	26.1878894826512	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGGCTCCTTGCAATG	4378	False	NA	18	True	AATAAA	-18	NA	79113576	79133666	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031037	chr15	+	1966	13	NNC	ENSMUSG00000068206.14	novel	1977	13	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_12	63.2966999315306	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGGCTCCTTGCAATG	4389	False	NA	18	True	AATAAA	-18	NA	79113587	79133666	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132925
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031044	chr15	-	3032	17	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_16	39.5790348543266	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212453	79170427	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212409
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031048	chr15	-	2867	16	NIC	ENSMUSG00000042632.18	novel	2943	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_8	51.8533830461748	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212453	79170427	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212409
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031050	chr15	-	2952	16	FSM	ENSMUSG00000042632.18	ENSMUST00000047816.15	2963	16	11	0	11	0	multi-exon	FALSE	canonical	0	0	junction_15	63.160817671155	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212417	79170427	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212288
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031092	chr15	-	3382	10	FSM	ENSMUSG00000009035.16	ENSMUST00000228002.2	3315	10	-47	-20	-27	0	multi-exon	FALSE	canonical	3	23	junction_1	128.214615603374	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTGCCAGCGAGGTT	NA	False	NA	-3	True	AATATA	-34	NA	79287503	79244883	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_79247086_79247857_79247879_79249484_79249680_79249986_79250157_79250786_79250879_79253869_79253946_79254097_79254189_79261246_79261413_79262663_79262914_79287384
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031117	chr15	+	1506	5	FSM	ENSMUSG00000010830.9	ENSMUST00000010974.9	1411	5	-94	-1	-94	1	multi-exon	FALSE	canonical	3	201	junction_3	14.7986485869487	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCAAGTATTTATTTATAC	NA	False	NA	12	True	AATAAA	-17	NA	79400517	79411941	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_79400842_79407011_79407113_79409004_79409164_79409867_79410121_79411272
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031122	chr15	-	4544	13	FSM	ENSMUSG00000055065.8	ENSMUST00000229877.2	4726	13	182	0	0	0	multi-exon	FALSE	canonical	3	55	junction_12	13.0064086767511	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGAATTTTTTATTACA	NA	False	NA	-40	True	AATAAA	-15	NA	79430760	79411936	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_79414719_79415878_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031123	chr15	-	4550	13	FSM	ENSMUSG00000055065.8	ENSMUST00000054014.9	4732	13	182	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	13.6714930502203	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGAATTTTTTATTACA	NA	False	NA	-40	True	AATAAA	-15	NA	79430760	79411936	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_79414719_79415872_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031140	chr15	+	1045	4	FSM	ENSMUSG00000022427.5	ENSMUST00000023062.5	1569	4	-3	527	-3	193	multi-exon	FALSE	canonical	3	903	junction_3	55.9305124437656	817	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTGTTTGTGGTAGTA	8175	False	NA	27	True	ATTAAA	-23	NA	79555058	79557074	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_79555210_79555373_79555493_79556097_79556216_79556417
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031150	chr15	-	3443	4	FSM	ENSMUSG00000022426.7	ENSMUST00000023061.7	3440	4	2	-5	2	5	multi-exon	FALSE	canonical	3	116	junction_1	10.9848380355227	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTACTTGTCTGATTATGT	NA	False	NA	2	True	ATTAAA	-20	NA	79572118	79558446	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_79560381_79561297_79561493_79561599_79561729_79570933
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031156	chr15	+	3427	12	FSM	ENSMUSG00000042535.10	ENSMUST00000046463.10	3449	12	22	0	22	0	multi-exon	TRUE	canonical	3	199	junction_6	19.3826198026279	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCATGTTCCCTGCCC	NA	False	NA	17	True	AATAAA	-18	NA	79575067	79605680	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_79575300_79578356_79578469_79591192_79591374_79591895_79592245_79596296_79596421_79597564_79597680_79600047_79600193_79600286_79600470_79601183_79601320_79601795_79601975_79603228_79603430_79604210
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031164	chr15	-	3822	18	FSM	ENSMUSG00000042524.15	ENSMUST00000046259.14	3804	18	-15	-3	-15	0	multi-exon	TRUE	canonical	0	0	junction_6	1.14366012324845	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGAGTGTGCTTTTTTCTG	NA	False	NA	0	True	AATAAA	-16	NA	79626752	79608270	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_79609762_79610742_79610836_79610991_79611160_79611251_79611368_79611716_79611802_79612063_79612286_79612616_79612783_79613233_79613278_79613681_79613760_79614290_79614546_79618308_79618437_79620046_79620127_79621266_79621361_79621673_79621770_79622720_79622862_79623020_79623212_79623921_79624083_79626539
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031169	chr15	-	3819	18	NNC	ENSMUSG00000042524.15	novel	3804	18	NA	NA	-11	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	1.18526127527117	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTGGAGTGTGCTTTTTT	NA	False	NA	-3	True	AATAAA	-13	NA	79626748	79608273	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_79609762_79610742_79610836_79610991_79611160_79611251_79611368_79611716_79611802_79612063_79612286_79612616_79612783_79613233_79613278_79613677_79613760_79614290_79614546_79618308_79618437_79620046_79620127_79621266_79621361_79621673_79621770_79622720_79622862_79623020_79623212_79623921_79624083_79626539
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031176	chr15	-	1475	4	FSM	ENSMUSG00000022420.17	ENSMUST00000023055.8	1472	4	-3	0	-3	0	multi-exon	FALSE	canonical	3	65	junction_3	38.6091526281874	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	240	False	NA	NA	False	ATTAAA	-17	NA	79658671	79645653	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_79646727_79647710_79647795_79649016_79649223_79658559
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031194	chr15	+	1972	9	NIC	ENSMUSG00000009585.19	novel	826	5	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	219.175122618878	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTGTGCATGATTGGG	7482	False	NA	8	True	NA	NA	NA	79775839	79792121	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031212	chr15	-	3188	6	FSM	ENSMUSG00000053411.17	ENSMUST00000132821.8	528	6	-11	-2649	-10	7	multi-exon	FALSE	canonical	3	258	junction_5	93.730251253264	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTCTGGTTGTTTGTTT	NA	False	NA	0	True	ATTAAA	-31	NA	79855330	79800000	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031217	chr15	-	3044	7	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	14	6	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_1	153.192326468687	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79816955	79800001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_79802252_79802440_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031218	chr15	-	2961	7	NIC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	-10	6	combination_of_known_junctions	FALSE	canonical	3	156	junction_1	121.853737461488	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79855330	79800001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031219	chr15	-	3025	7	FSM	ENSMUSG00000053411.17	ENSMUST00000109616.9	2899	7	-120	-6	-4	6	multi-exon	FALSE	canonical	3	156	junction_1	127.989582909444	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79816973	79800001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031222	chr15	-	2998	7	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	-10	6	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_1	148.84294481843	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79855330	79800001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_79802252_79802440_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031242	chr15	-	3268	6	FSM	ENSMUSG00000053411.17	ENSMUST00000109615.8	710	6	-249	-2309	-21	6	multi-exon	FALSE	canonical	3	216	junction_5	106.136892737634	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79816990	79800001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031243	chr15	-	3143	5	NIC	ENSMUSG00000053411.17	novel	528	6	NA	NA	-10	6	intron_retention	FALSE	canonical	3	17	junction_4	180.403021039006	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79855330	79800001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79855069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031250	chr15	-	3512	6	FSM	ENSMUSG00000053411.17	ENSMUST00000089293.11	3388	6	-115	-9	14	6	multi-exon	FALSE	canonical	3	31	junction_2	177.465038810465	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79816955	79800001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_79802678_79802953_79803306_79805572_79805640_79807672_79807739_79814786_79814831_79816648
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031310	chr15	-	1882	9	FSM	ENSMUSG00000060036.15	ENSMUST00000187578.2	1877	9	-2	-3	-2	-1	multi-exon	FALSE	canonical	3	16287	junction_8	5123.08483118326	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTTCCCACATTTCTT	3569	False	NA	-2	True	AATAAA	-16	NA	79967556	79961992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965985_79966590_79966784_79967524
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031311	chr15	-	1479	10	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	214	junction_7	9920.80080773053	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTTCCCACATTTCTT	3569	False	NA	-2	True	AATAAA	-16	NA	79967556	79961992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031324	chr15	-	1287	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	453	junction_9	9476.19179253401	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3569	False	NA	-6	True	AATAAA	-12	NA	79967556	79961996	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966776_79967524
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031330	chr15	-	2393	8	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	16287	junction_7	5307.90272968101	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3569	False	NA	-6	True	AATAAA	-12	NA	79967556	79961996	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965985_79966590_79966784_79967524
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031349	chr15	-	2627	4	Fusion	ENSMUSG00000060036.15_ENSMUSG00002075255.1	novel	824	5	NA	NA	-2	1212	intron_retention	FALSE	canonical	3	16287	junction_3	6785.68278722848	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCTTGGTAACTGTAAAA	3569	False	NA	NA	False	NA	NA	NA	79967556	79963239	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr15_-_79964754_79965096_79965985_79966590_79966784_79967524
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031374	chr15	+	2977	11	FSM	ENSMUSG00000022414.9	ENSMUST00000023050.9	2964	11	-13	0	-13	0	multi-exon	FALSE	canonical	3	51	junction_3	7.29109045342327	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCATCTTGTCTATCTG	4980	False	NA	15	True	AGTAAA	-1	NA	80017314	80045908	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_80017390_80032427_80032565_80032887_80033042_80033982_80034070_80034627_80034767_80036865_80036980_80037832_80037945_80039957_80040103_80041804_80042028_80042951_80043109_80044274
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031398	chr15	+	1445	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	284	-4	-55	4	multi-exon	FALSE	canonical	3	1292	junction_2	43	556	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGTTTTCAGTGTCATT	4429	False	NA	36	True	AATAAA	-24	NA	80139668	80141746	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_80139887_80140407_80140723_80140834
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031406	chr15	-	844	4	FSM	ENSMUSG00000051518.9	ENSMUST00000052499.9	838	4	-4	-2	-4	2	multi-exon	FALSE	canonical	3	697	junction_3	66.5181679443043	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAAGTGTGTGTGTGTGTG	NA	False	NA	-3	True	AATAAA	-27	NA	80148520	80144813	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_80145332_80145497_80145596_80148183_80148319_80148427
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031418	chr15	+	2076	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	-5	1640	-5	187	multi-exon	FALSE	canonical	3	932	junction_8	68.052471585453	442	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTGTTTTATATTTTT	NA	False	NA	5	True	NA	NA	NA	80832685	80853507	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031459	chr15	+	214	1	Intergenic	novelGene_138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTCAGCTACTCCCTAAT	7493	False	NA	NA	False	NA	NA	NA	81197993	81198207	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_81198000_81198200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031484	chr15	+	3470	10	FSM	ENSMUSG00000022401.13	ENSMUST00000163754.9	6058	10	12	2576	0	18	multi-exon	FALSE	canonical	3	30	junction_9	9.02397355744309	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGTGAACTGGGCATAG	NA	False	NA	NA	False	NA	NA	NA	81284350	81339107	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_81284489_81298632_81298750_81311476_81311885_81314890_81315094_81320914_81320978_81322267_81322382_81326579_81326666_81332519_81332698_81335101_81335223_81337065
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031496	chr15	-	179	1	Intergenic	novelGene_139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTACTTTTTAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	81437623	81437444	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_-_81437400_81437600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031504	chr15	+	3446	17	NNC	ENSMUSG00000022394.15	novel	3487	17	NA	NA	-7	0	intron_retention	FALSE	canonical	0	0	junction_1	163.769070931449	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGATGATATCAGATGAGT	NA	False	NA	17	True	AATAAA	-24	NA	81548127	81572516	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_81548226_81551362_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031519	chr15	-	2969	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	69	-5	-33	0	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	1126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGAAGCTTCTTTCATCAA	NA	False	NA	-4	True	AATAAA	-25	NA	81614135	81588448	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031529	chr15	-	2840	16	NNC	ENSMUSG00000022391.17	novel	3033	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_5	202.347182392595	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	-9	True	AATAAA	-20	NA	81614081	81588453	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593738_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031554	chr15	-	566	2	ISM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	123	19983	0	-5446	5prime_fragment	FALSE	canonical	3	698	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTCCTGGTCTATGACT	NA	False	NA	NA	False	NA	NA	NA	81614081	81608436	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr15_-_81608834_81613912
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031573	chr15	+	4244	4	FSM	ENSMUSG00000022389.16	ENSMUST00000023024.8	4079	4	0	-165	0	0	multi-exon	FALSE	canonical	3	69	junction_3	7.84573486395988	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCAGTGGTCTTTTCTG	NA	False	NA	17	True	ATTAAA	-17	NA	81695614	81711064	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_81695922_81699144_81699463_81705399_81705621_81707666
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031585	chr15	-	881	4	FSM	ENSMUSG00000061360.9	ENSMUST00000023117.10	1663	4	-14	796	-14	153	multi-exon	FALSE	canonical	3	1228	junction_3	69.0426599204354	239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAACGTCTACTTTTAGT	NA	False	NA	-3	True	AATAAA	-23	NA	81756126	81749516	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_81750094_81754532_81754700_81755366_81755391_81756013
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031592	chr15	+	2787	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	137	-6	-38	6	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	1295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGTGATTGATGTCTA	NA	False	NA	25	True	AAAAAG	-22	NA	81756646	81799340	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031599	chr15	+	2749	18	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	478.144112572291	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTCTGCCTGAGTGA	NA	False	NA	15	True	AAAAAG	-12	NA	81756678	81799330	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791737_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031662	chr15	-	2983	6	FSM	ENSMUSG00000022472.17	ENSMUST00000152227.8	2934	6	-48	-1	14	1	multi-exon	FALSE	canonical	3	162	junction_5	9.30806102257608	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGGTAAGTTGCTTGAA	NA	False	NA	-8	True	AATAAA	-17	NA	81900412	81876722	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_81879047_81882310_81882434_81883705_81883816_81886741_81886812_81887958_81887981_81900078
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031679	chr15	+	1997	12	NIC	ENSMUSG00000022471.15	novel	2114	13	NA	NA	26	-1	combination_of_known_splicesites	TRUE	canonical	3	28	junction_1	190.783291885872	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGTGCACTTTTCAGT	NA	False	NA	27	True	AATAAA	-13	NA	81900595	81924284	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_+_81900677_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031697	chr15	+	5063	19	FSM	ENSMUSG00000022463.9	ENSMUST00000023100.8	5077	19	19	-5	-4	5	multi-exon	FALSE	canonical	3	437	junction_18	78.7541886011292	366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTGTGAGTCTGTAGTA	2192	False	NA	30	True	AATAAA	-26	NA	82031400	82089585	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385_82087498_82087897
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031724	chr15	-	1843	4	FSM	ENSMUSG00000096883.3	ENSMUST00000179269.3	2588	4	-39	784	-39	242	multi-exon	FALSE	canonical	3	79	junction_3	2.62466929133727	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGATCGATCATCAGTCAT	NA	False	NA	-4	True	AATAAA	-26	NA	82097055	82091152	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_82091749_82091951_82092099_82092663_82092798_82096089
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031761	chr15	-	1811	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-9	-15	combination_of_known_splicesites	FALSE	canonical	2	29	junction_8	84.7758072801433	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGTTTTCTAATCAACCA	1354	False	NA	-15	True	AATAAA	-16	NA	82223017	82213747	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222952
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031785	chr15	+	204	1	Intergenic	novelGene_140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCAAGGCTTTGACCACG	872	False	NA	NA	False	NA	NA	NA	82899943	82900147	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_82899900_82900100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031789	chr15	-	1974	8	NNC	ENSMUSG00000018040.10	novel	4363	7	NA	NA	0	23246	intron_retention	FALSE	canonical	0	0	junction_1	323.560863908263	657	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACTCCCCCTCTTTAAAA	NA	False	NA	NA	False	AAAAAG	-4	NA	83007002	82974387	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_82974408_83000042_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031813	chr15	-	1906	7	NNC	ENSMUSG00000018040.10	novel	4363	7	NA	NA	-2	2	intron_retention	FALSE	canonical	0	0	junction_3	348.571569249256	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTCTCCTGAGCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	83006954	83000046	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_83001173_83001749_83001949_83002277_83002376_83003381_83003504_83004092_83004219_83006032_83006176_83006862
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031815	chr15	-	3319	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	-10	-10	-10	10	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTTTTTTCATGGAT	NA	False	NA	-1	True	AATAAA	-27	NA	83033595	83010166	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031822	chr15	-	3254	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	14	6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	199.638995176448	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATAATGTCTTTTTTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	83033571	83010170	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_83011492_83011528_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031839	chr15	-	3148	8	NIC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_5	214.875664095328	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	-11	True	AATAAA	-17	NA	83033530	83010176	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83021668_83021756_83022332_83022724_83033395
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031850	chr15	-	2055	9	FSM	ENSMUSG00000018042.19	ENSMUST00000018186.16	2422	9	366	1	366	-1	multi-exon	FALSE	canonical	3	1513	junction_1	61.7454451761423	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCAGCGTTTCTCTGG	NA	False	NA	-1	True	AGTAAA	-17	NA	83056427	83037695	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031866	chr15	-	2100	3	FSM	ENSMUSG00000047878.14	ENSMUST00000049530.14	2092	3	-8	0	-8	0	multi-exon	FALSE	canonical	3	57	junction_2	20.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATGCCTCATGGTCACA	2215	False	NA	-8	True	AATAAA	-16	NA	83135983	83110922	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_83112796_83114714_83114859_83135900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031871	chr15	+	205	1	Intergenic	novelGene_141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATACTTGGCAAATCCCAG	NA	False	NA	NA	False	NA	NA	NA	83133363	83133568	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_83133400_83133600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031925	chr15	-	2066	12	FSM	ENSMUSG00000022442.17	ENSMUST00000016897.12	2060	12	-6	0	-6	0	multi-exon	FALSE	canonical	3	63	junction_11	7.21110255092798	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACTTTATCTTATTATT	NA	False	NA	NA	False	NA	NA	NA	83395100	83367969	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83394934
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031933	chr15	-	1926	4	FSM	ENSMUSG00000048755.10	ENSMUST00000061882.10	1917	4	-8	-1	-8	1	multi-exon	FALSE	canonical	3	138	junction_2	37.1423687391577	534	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTCTCTCTCTCTGTGT	8043	False	NA	1	True	AATAAA	-24	NA	83439944	83430996	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_83432144_83433318_83433537_83436734_83436823_83439471
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031940	chr15	+	879	4	FSM	ENSMUSG00000041736.8	ENSMUST00000047419.8	837	4	-42	0	-42	0	multi-exon	FALSE	canonical	3	179	junction_1	54.5119762580257	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCTGTACTTAGTGGA	NA	False	NA	21	True	AATAAA	-21	NA	83447750	83458404	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_83447846_83455585_83455797_83456400_83456540_83457970
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031946	chr15	-	3821	14	FSM	ENSMUSG00000016757.12	ENSMUST00000016901.5	3774	14	-47	0	-47	0	multi-exon	FALSE	canonical	3	239	junction_9	15.0977093760069	771	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTCAGGTACTTCACATG	4624	False	NA	NA	False	AATATA	-19	NA	83479405	83459290	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_83461250_83461947_83462087_83462835_83462905_83464268_83464351_83464695_83464848_83465868_83465981_83466245_83466441_83466546_83466664_83468856_83468934_83471051_83471186_83471274_83471435_83472703_83472903_83475579_83475750_83479149
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031952	chr15	-	2419	8	FSM	ENSMUSG00000018865.10	ENSMUST00000229826.2	1319	8	-52	-1048	-52	0	multi-exon	FALSE	canonical	3	60	junction_2	10.0285307284481	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGTCTGTGTGC	NA	False	NA	-1	True	AATAAA	-17	NA	83989862	83960297	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_83961784_83962969_83963099_83964387_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031967	chr15	+	1704	15	FSM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	-27	2952	-27	-2952	multi-exon	FALSE	canonical	3	1573	junction_6	135.39963524504	1126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTGGTCTGTTTTTCAGG	NA	False	NA	39	True	AATAAA	-25	NA	84076414	84098516	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031974	chr15	+	1684	15	NNC	ENSMUSG00000022437.8	novel	4629	15	NA	NA	-14	-2963	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	483.618904611843	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGTGTCCTGGATGTGGTC	NA	False	NA	28	True	AATAAA	-14	NA	84076427	84098505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092106_84094684_84094832_84095237_84095380_84098326
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031992	chr15	+	2893	13	FSM	ENSMUSG00000022439.10	ENSMUST00000023074.9	2619	13	-274	0	-274	0	multi-exon	TRUE	canonical	2	3	junction_2	5.54464205837992	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATGACTTAATGACAGCC	NA	False	NA	NA	False	AATAAA	-20	NA	84208646	84227143	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_84209033_84211188_84211285_84212495_84212561_84213064_84213168_84214223_84214365_84215179_84215296_84216491_84216548_84216891_84216915_84218542_84218602_84218786_84218856_84221985_84222088_84225054_84225128_84225539
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000031998	chr15	+	1861	8	FSM	ENSMUSG00000036106.16	ENSMUST00000065499.5	1830	8	-30	-1	-30	0	multi-exon	FALSE	canonical	3	134	junction_7	10.3844467687921	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTCTGCCCCCTGGTG	NA	False	NA	5	True	AATAAA	-15	NA	84565172	84587874	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032022	chr15	+	2518	9	FSM	ENSMUSG00000022434.9	ENSMUST00000023069.9	2518	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	15.0742951742362	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGCTCAGTTTTTC	NA	False	NA	8	True	AATAAA	-15	NA	84921289	84947031	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032027	chr15	+	2678	10	NIC	ENSMUSG00000022434.9	novel	2518	9	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	65.1689163199833	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGCTCAGTTTTTC	NA	False	NA	8	True	AATAAA	-15	NA	84921322	84947031	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_+_84921446_84922972_84923166_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032056	chr15	+	2732	17	FSM	ENSMUSG00000006369.15	ENSMUST00000057410.14	3659	17	83	844	27	-844	multi-exon	TRUE	canonical	3	136	junction_16	137.738202761616	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGATTGCAATTTTGTTCA	NA	False	NA	58	True	NA	NA	NA	85090232	85169892	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_85090414_85106104_85106211_85108450_85108587_85111168_85111341_85113760_85113818_85114999_85115102_85115617_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85147459_85147603_85149450_85149583_85169240
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032071	chr15	-	824	4	FSM	ENSMUSG00000064284.13	ENSMUST00000150995.8	566	4	27	-285	-11	0	multi-exon	FALSE	canonical	3	9	junction_3	150.534602888062	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8112	False	NA	0	True	ATTAAA	-15	NA	85695871	85691172	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695839
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032154	chr15	+	2430	6	FSM	ENSMUSG00000035828.12	ENSMUST00000042818.11	2427	6	0	-3	0	3	multi-exon	TRUE	canonical	3	800	junction_3	47.4021096576935	295	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTTTATTGGACTGGG	NA	False	NA	33	True	ATTAAA	-23	NA	88746388	88749932	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_88746956_88747040_88747151_88747243_88747295_88747381_88747752_88748518_88748696_88748777
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032182	chr15	+	2441	10	FSM	ENSMUSG00000015363.14	ENSMUST00000081702.12	2439	10	-2	0	-2	0	multi-exon	FALSE	canonical	3	86	junction_1	6.70175948888899	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCTTTGTGAAGTGTATGG	NA	False	NA	9	True	AATAAA	-19	NA	88960213	88971280	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_88960345_88965182_88965248_88965555_88965635_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032193	chr15	+	2373	9	FSM	ENSMUSG00000035757.18	ENSMUST00000082439.6	2383	9	11	-1	11	1	multi-exon	TRUE	canonical	3	22	junction_2	3.38193731461717	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGGTCACTGCCTTGGC	NA	False	NA	NA	False	AATAAA	-19	NA	88973297	88984544	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_88973869_88976906_88977111_88978339_88978527_88979801_88979933_88980741_88981023_88982834_88982980_88983465_88983652_88983789_88983947_88984033
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032223	chr15	-	6193	41	FSM	ENSMUSG00000036529.18	ENSMUST00000144585.9	6165	41	-25	-3	-9	3	multi-exon	FALSE	canonical	3	242	junction_22	71.0688002923927	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTACGCCTGCATCAGCAC	NA	False	NA	-12	True	TATAAA	-20	NA	89199483	89172482	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_89172929_89173014_89173147_89173224_89173313_89173807_89174020_89174125_89174234_89177638_89177870_89177941_89178073_89178147_89178275_89178346_89178533_89178605_89178708_89179335_89179516_89179597_89179780_89180154_89180233_89183685_89183824_89183907_89184105_89184423_89184632_89184730_89184868_89184975_89185155_89186045_89186174_89186384_89186581_89186654_89186729_89186807_89186981_89187079_89187349_89187422_89187582_89187675_89187745_89188012_89188163_89188887_89189001_89189083_89189289_89189365_89189465_89189546_89189676_89189746_89189861_89190197_89190276_89190382_89190497_89190571_89190681_89190780_89190914_89191032_89191139_89191695_89191807_89191889_89192049_89192224_89192363_89192687_89192774_89199264
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032236	chr15	-	2784	14	NNC	ENSMUSG00000022614.9	novel	2906	14	NA	NA	-9	0	intron_retention	TRUE	canonical	0	0	junction_12	66.7675469479281	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTAGTGGTTTTTCCTT	NA	False	NA	-3	True	AATAAA	-21	NA	89239871	89235341	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238762_89239021_89239558
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032289	chr15	+	2033	20	NNC	ENSMUSG00000008690.16	novel	3302	20	NA	NA	-13	17	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	360.280769243906	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTTCACCGGACAGACTA	NA	False	NA	15	True	AATAAA	-15	NA	89239952	89255783	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_89240134_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254516_89254597_89254692_89254803_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032293	chr15	+	1969	1	NIC	ENSMUSG00000008690.16	novel	3223	20	NA	NA	-13	-6162	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCTCACAATGGCCTGTA	NA	False	NA	NA	False	NA	NA	NA	89239952	89241921	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_+_89240000_89241900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032442	chr15	-	2062	16	NNC	ENSMUSG00000023169.16	novel	6966	16	NA	NA	3769	-258	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_15	116.760076890843	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTTCATAAATAATTTGCC	NA	False	NA	NA	False	NA	NA	NA	96536074	96474125	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96536028
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032462	chr15	-	3964	16	FSM	ENSMUSG00000022464.15	ENSMUST00000023101.10	3932	16	-20	-12	-20	9	multi-exon	FALSE	canonical	3	1416	junction_8	94.9644143877063	778	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTTCGTGAGTTATTT	NA	False	NA	0	True	AATAAA	-28	NA	96953857	96892691	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032490	chr15	-	842	3	FSM	ENSMUSG00000116295.2	ENSMUST00000231024.2	655	3	-26	-161	-26	161	multi-exon	FALSE	canonical	3	219	junction_1	244.5	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTAATTGCAATCCAGG	NA	False	NA	NA	False	NA	NA	NA	97065151	97058652	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_97059277_97064383_97064508_97065057
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032509	chr15	+	2261	2	NNC	ENSMUSG00000044250.9	novel	2185	6	NA	NA	15477	13	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTCTGCCTGTTGTGTG	NA	False	NA	27	True	AATAAA	-28	NA	97274574	97283574	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_97275170_97281908
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032517	chr15	-	2289	17	FSM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	-15	-3	-15	3	multi-exon	FALSE	canonical	3	236	junction_16	35.978292066189	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCGATATTTCATTTTAT	NA	False	NA	0	True	AATAAA	-28	NA	97603721	97572974	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598948_97599093_97601082_97601251_97603630
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032525	chr15	+	2537	3	FSM	ENSMUSG00000081534.4	ENSMUST00000117892.2	2536	3	-1	0	-1	0	multi-exon	TRUE	canonical	3	145	junction_2	1	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTTTTTTTTTCACT	NA	False	NA	17	True	AATAAA	-18	NA	97682234	97690573	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_97682498_97687783_97687952_97688467
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032552	chr15	-	3185	18	FSM	ENSMUSG00000033075.18	ENSMUST00000044189.16	6575	18	178	3212	3	-223	multi-exon	FALSE	canonical	3	84	junction_17	35.6797559226372	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAATGTGTTTACCATT	6146	False	NA	NA	False	TTTAAA	-19	NA	97991447	97939836	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97991163
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032569	chr15	+	2340	19	NNC	ENSMUSG00000033065.15	novel	2816	23	NA	NA	12568	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	22.6396898290492	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	NA	False	NA	7	True	AATAAA	-19	NA	98018914	98030328	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_98018951_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032576	chr15	+	2442	18	ISM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	12593	-6	12593	0	3prime_fragment	FALSE	canonical	3	75	junction_7	12.0037479729426	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	NA	False	NA	7	True	AATAAA	-19	NA	98018939	98030328	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr15_+_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032579	chr15	-	2177	4	FSM	ENSMUSG00000048175.14	ENSMUST00000123626.8	1100	4	0	-1077	0	0	multi-exon	FALSE	canonical	3	84	junction_3	16.7531091641721	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCACTTCCAGTTTCT	NA	False	NA	0	True	AATAAA	-21	NA	98043587	98032517	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_98034320_98039164_98039270_98040531_98040696_98043481
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032581	chr15	-	2199	4	FSM	ENSMUSG00000048175.14	ENSMUST00000059112.12	1049	4	-73	-1077	-26	0	multi-exon	FALSE	canonical	3	32	junction_3	39.6848697728604	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCACTTCCAGTTTCT	NA	False	NA	0	True	AATAAA	-21	NA	98043613	98032517	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_98034320_98039164_98039270_98040531_98040692_98043481
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032591	chr15	-	3632	10	FSM	ENSMUSG00000022992.18	ENSMUST00000230542.2	3596	10	-36	0	-36	0	multi-exon	FALSE	canonical	1	385	junction_5	229.121025758101	1007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGGACGGAATCATGTT	NA	False	NA	NA	False	NA	NA	NA	98432181	98415538	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032619	chr15	-	2446	10	NIC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	1	3	junction_5	331.583108774695	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATCTGGATCGATTGTGT	NA	False	NA	-9	True	ATTAAA	-26	NA	98432145	98416688	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426907_98427166_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032631	chr15	-	2148	10	NIC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	1	77	junction_9	343.824388135198	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATCTGGATCGATTGTGT	NA	False	NA	-9	True	ATTAAA	-26	NA	98432186	98416688	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98432121
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032705	chr15	-	3210	17	FSM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	-20	-3	-15	3	multi-exon	FALSE	canonical	3	15	junction_5	5.44252641243017	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	6979	False	NA	-11	True	AATAAA	-18	NA	98560790	98543011	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032710	chr15	-	843	2	FSM	ENSMUSG00000003360.16	ENSMUST00000159170.2	610	2	-20	-213	-15	213	multi-exon	FALSE	canonical	3	29	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGAGAGAGGTGGCAGAA	6979	False	NA	NA	False	NA	NA	NA	98560790	98555560	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_98556317_98560703
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032726	chr15	-	3582	5	FSM	ENSMUSG00000051853.11	ENSMUST00000053183.12	4566	5	-3	987	0	-987	multi-exon	FALSE	canonical	3	612	junction_3	18.4712614620659	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGCAGCCCTTTGTCCTTG	1796	False	NA	-6	True	ATTAAA	-19	NA	98661095	98635501	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_98638376_98638871_98638997_98639204_98639316_98640473_98640711_98660860
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032762	chr15	-	1617	4	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2236.04000162987	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGTTTCTGGATACTT	158	False	NA	NA	False	AGTAAA	-15	NA	98832319	98829308	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_98830444_98830572_98830722_98830853_98831077_98832209
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032785	chr15	+	209	1	Intergenic	novelGene_142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGATCTGCCCTGGCCT	NA	False	NA	NA	False	NA	NA	NA	98901268	98901477	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_98901300_98901500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032796	chr15	+	1647	1	NIC	ENSMUSG00000043091.10	novel	1982	4	NA	NA	0	-2935	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTTTTTAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	98928201	98929848	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_+_98928200_98929800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032811	chr15	+	2265	14	FSM	ENSMUSG00000032783.10	ENSMUST00000039665.8	2255	14	-4	-6	-4	0	multi-exon	FALSE	canonical	3	68	junction_1	8.88852727732572	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCAGCCAGTGCTGTTG	NA	False	NA	14	True	AATAAA	-23	NA	98972854	98981290	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_98972974_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032818	chr15	+	2236	14	FSM	ENSMUSG00000032783.10	ENSMUST00000230054.2	2639	14	403	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	17.6655315775427	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCAGCCAGTGCTGTTG	NA	False	NA	14	True	AATAAA	-23	NA	98972858	98981290	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_98972949_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032840	chr15	+	3117	13	FSM	ENSMUSG00000051934.6	ENSMUST00000063517.6	3096	13	-21	0	-21	0	multi-exon	FALSE	canonical	3	296	junction_2	25.9147909289056	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTAGCGCCGTCTCTCT	NA	False	NA	18	True	AATAAA	-23	NA	99024415	99111096	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_99024769_99047514_99047812_99064960_99065041_99071282_99071392_99072282_99072333_99076187_99076447_99078461_99078642_99083839_99083976_99097088_99097148_99103478_99103589_99106713_99106817_99108762_99108978_99109930
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032847	chr15	-	1919	15	FSM	ENSMUSG00000037570.17	ENSMUST00000041190.17	1916	15	-2	-1	-2	1	multi-exon	FALSE	canonical	3	647	junction_2	85.1129201923742	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTTATTTTTTTTTAA	NA	False	NA	2	True	AATAAA	-22	NA	99149844	99140696	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032850	chr15	-	1798	14	FSM	ENSMUSG00000037570.17	ENSMUST00000163506.3	1771	14	-18	-9	-2	0	multi-exon	FALSE	canonical	3	113	junction_13	210.299476515005	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTTTATTTTTTTTTA	NA	False	NA	1	True	AATAAA	-21	NA	99149844	99140697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99149742
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032923	chr15	+	2384	11	FSM	ENSMUSG00000023010.16	ENSMUST00000160635.8	871	11	-1	-1512	-1	-1	multi-exon	FALSE	canonical	3	18	junction_1	734.518481727996	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTGTCTCAGTGTTAAA	NA	False	NA	14	True	AATAAA	-19	NA	99290865	99307929	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_99290922_99291575_99291612_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032925	chr15	+	2562	11	FSM	ENSMUSG00000023010.16	ENSMUST00000161250.8	1148	11	0	-1414	0	-1	multi-exon	FALSE	canonical	3	52	junction_1	709.276455269735	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTGTCTCAGTGTTAAA	NA	False	NA	14	True	AATAAA	-19	NA	99290866	99307929	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_99290922_99297537_99297753_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032956	chr15	-	2887	17	NIC	ENSMUSG00000023015.15	novel	3052	18	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_15	170.527387371501	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	0	True	AATAAA	-20	NA	99549504	99518376	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537687_99540763_99540853_99549387
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032968	chr15	-	2992	18	NIC	ENSMUSG00000023015.15	novel	3052	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_16	197.839524637143	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	0	True	AATAAA	-20	NA	99549493	99518376	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541302_99541405_99549387
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000032981	chr15	+	229	1	Intergenic	novelGene_143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACCCAACTCCCCGAATT	NA	False	NA	NA	False	NA	NA	NA	99566057	99566286	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_99566100_99566300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033031	chr15	-	3268	11	NIC	ENSMUSG00000023022.15	novel	4243	11	NA	NA	0	-940	combination_of_known_junctions	FALSE	canonical	3	155	junction_10	232.114109868401	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAACCAACCTCACAAACA	8023	False	NA	NA	False	AAGAAA	-18	NA	99772552	99677290	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724719_99741555_99741705_99772463
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033096	chr15	-	4152	5	FSM	ENSMUSG00000044636.7	ENSMUST00000061457.7	4375	5	223	0	223	0	multi-exon	FALSE	canonical	3	12	junction_4	9.28372231381357	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTGGGTTCTTTATCTT	NA	False	NA	2	True	ATTAAA	-17	NA	100393146	100377450	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_100380582_100382330_100382628_100385825_100386086_100387315_100387548_100392914
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033119	chr15	+	1876	4	FSM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	259	0	259	0	multi-exon	FALSE	canonical	0	0	junction_1	569.007518013212	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGCATTCTTTACTTAG	NA	False	NA	18	True	AATAAA	-25	NA	100513488	100518642	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033136	chr15	-	2024	11	NNC	ENSMUSG00000098112.9	novel	2036	11	NA	NA	10	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	44.5157275577969	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAGGTGTCTTGCCCTGAA	NA	False	NA	-5	True	AATAAA	-17	NA	100567424	100538963	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_100539446_100542689_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033145	chr15	-	3848	12	FSM	ENSMUSG00000037280.13	ENSMUST00000161514.2	2746	12	-48	-1054	-48	3	multi-exon	FALSE	canonical	3	77	junction_7	8.71021059418435	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTTGGATTTGAGTTCCT	1626	False	NA	-4	True	AATAAA	-22	NA	100618406	100589690	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895_100618117_100618287
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033167	chr15	+	2041	8	FSM	ENSMUSG00000000531.6	ENSMUST00000000543.6	2033	8	-7	-1	-7	1	multi-exon	FALSE	canonical	3	148	junction_1	31.968096341094	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCAGTGTGGTAACTG	6234	False	NA	13	True	TATAAA	-22	NA	101122061	101130638	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_101122426_101124794_101124845_101126712_101126768_101126871_101126975_101128414_101128509_101128605_101128673_101128865_101128933_101129397
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033170	chr15	+	2463	7	ISM	ENSMUSG00000000531.6	ENSMUST00000000543.6	2033	8	35	0	35	0	intron_retention	FALSE	canonical	3	148	junction_1	34.0069437353935	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCAGTGTGGTAACT	6276	False	NA	12	True	TATAAA	-21	NA	101122103	101130637	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr15_+_101122426_101124794_101124845_101126712_101126768_101126871_101126975_101128414_101128509_101128605_101128673_101128865
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033192	chr15	+	2403	7	NNC	ENSMUSG00000023034.8	novel	893	2	NA	NA	1192	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	68.8486665730636	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTTTTTTTCTGTTT	NA	False	NA	19	True	AATAAA	-21	NA	101165918	101172676	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_101165971_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033245	chr15	-	2102	16	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	-11	24	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	33.4241429708128	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTTCATTAAAATTATG	6621	False	NA	NA	False	AAAAAG	-4	NA	102112339	102085723	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102112130
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033337	chr15	-	1812	16	FSM	ENSMUSG00000036678.9	ENSMUST00000041208.9	1811	16	2	-3	2	3	multi-exon	FALSE	canonical	3	447	junction_7	35.3844912669692	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTAACTCCGAGTGTAT	NA	False	NA	-2	True	AATAAA	-28	NA	102259192	102246683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033368	chr15	+	1185	5	FSM	ENSMUSG00000023048.14	ENSMUST00000023810.12	1224	5	33	6	6	-6	multi-exon	FALSE	canonical	3	129	junction_1	259.364969685576	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGACTGGGCTAGTTTTG	2411	False	NA	34	True	AATAAA	-37	NA	102367642	102371235	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_102367691_102367898_102368017_102368542_102368582_102368804_102369155_102370605
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033423	chr15	+	1699	8	ISM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	-42	0	-10	0	intron_retention	TRUE	canonical	3	312	junction_3	28	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426851	102432111	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033436	chr15	+	1504	9	NIC	ENSMUSG00000023051.12	novel	782	8	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	96.5083383703191	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102427154	102432111	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr15_+_102427280_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033444	chr15	-	2189	12	NNC	ENSMUSG00000099083.8	novel	2523	12	NA	NA	5	18	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	15.3466824153308	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAACTCTGAGAGTTTGA	NA	False	NA	NA	False	AAAACA	-17	NA	102533518	102441988	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_-_102442874_102446617_102446727_102449174_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465890_102466014_102471748_102471846_102502106_102502176_102533473
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033449	chr15	+	389	1	FSM	ENSMUSG00000036305.8	ENSMUST00000146505.2	151	1	-60	-178	-60	178	mono-exon	FALSE	NA	NA	NA	NA	NA	1092	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACCTTCAGAAAATATGG	NA	False	NA	NA	False	AATAAA	-45	NA	102543412	102543801	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_102543400_102543800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033453	chr15	+	198	1	Intergenic	novelGene_144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGACTCAGTGATGACCC	NA	False	NA	NA	False	NA	NA	NA	102560615	102560813	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_+_102560600_102560800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033461	chr15	-	2755	15	FSM	ENSMUSG00000023055.11	ENSMUST00000023818.11	2824	15	69	0	22	0	multi-exon	FALSE	canonical	3	88	junction_14	14.2851785613836	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGTCATGACGTATGTT	NA	False	NA	-6	True	AATATA	-19	NA	102630544	102615211	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_102615982_102616980_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033469	chr15	+	1933	2	FSM	ENSMUSG00000001655.7	ENSMUST00000001700.7	2461	2	-16	544	-16	-544	multi-exon	FALSE	canonical	3	47	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCTCCAGCCACAATGCT	NA	False	NA	NA	False	NA	NA	NA	102829521	102836705	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_102830353_102835603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033500	chr15	+	1799	11	NNC	ENSMUSG00000046434.17	novel	3118	13	NA	NA	-399	2	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_1	4002.55468919539	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGACAACTGTATGGA	NA	False	NA	1	True	AATAAA	-19	NA	103148459	103153384	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr15_+_103148545_103148905_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033507	chr15	+	661	1	ISM	ENSMUSG00000046434.17	ENSMUST00000230489.2	3118	13	3830	1735	3803	2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGACAACTGTATGGA	NA	False	NA	1	True	AATAAA	-19	NA	103152723	103153384	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr15_+_103152700_103153400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033536	chr15	-	786	10	FSM	ENSMUSG00000022487.15	ENSMUST00000141364.8	700	10	-30	-56	0	0	multi-exon	FALSE	canonical	3	29	junction_9	37.8499310957182	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCAAGTACTTTTTTTTT	8423	False	NA	1	True	AGTAAA	-19	NA	103338836	103310884	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338603_103338685_103338782
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033541	chr15	-	225	1	Intergenic	novelGene_145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTCCTAGCACCTATATCA	9348	False	NA	NA	False	NA	NA	NA	103314182	103313957	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr15_-_103314000_103314200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033543	chr15	+	3101	16	FSM	ENSMUSG00000022489.7	ENSMUST00000023132.5	3218	16	119	-2	119	2	multi-exon	FALSE	canonical	2	9	junction_2	5.10163372525573	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGTGTGGTGTTCATTA	NA	False	NA	11	True	AATAAA	-17	NA	103411579	103438481	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr15_+_103411800_103411887_103412011_103428375_103428490_103429732_103429916_103430079_103430147_103430471_103430589_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033553	chr16	+	871	1	Genic_Genomic	ENSMUSG00000116389.2	novel	NA	NA	NA	NA	-472	-1622	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGAAAGATTGTAAGTCCA	NA	False	NA	NA	False	ATTAAA	-10	NA	3164303	3165174	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr16_+_3164300_3165200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033560	chr16	+	3238	6	FSM	ENSMUSG00000022529.12	ENSMUST00000023176.5	3241	6	12	-9	12	0	multi-exon	FALSE	canonical	3	89	junction_1	57.158026557956	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTATAAATCTTTATTGG	NA	False	NA	12	True	AATAAA	-21	NA	3561968	3568654	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_3562632_3563640_3563822_3564285_3564360_3564634_3564759_3566012_3566130_3566575
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033574	chr16	+	208	1	Intergenic	novelGene_146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATCCCTCCATGGCCTC	NA	False	NA	NA	False	NA	NA	NA	3835649	3835857	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr16_+_3835600_3835900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033584	chr16	-	3058	17	NIC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	6	0	intron_retention	TRUE	canonical	3	963	junction_14	113.904410993385	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGACGTTTTCTCTGTTCT	NA	False	NA	-3	True	ATTAAA	-22	NA	3895685	3857834	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033625	chr16	-	3506	28	FSM	ENSMUSG00000039637.16	ENSMUST00000038552.13	4296	28	40	750	5	494	multi-exon	TRUE	canonical	3	90	junction_15	10.2195380265448	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGTGCTGCTCCACT	NA	False	NA	0	True	ATTAAA	-17	NA	4497601	4444746	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_4445364_4445473_4445561_4446047_4446140_4446539_4446676_4446919_4447037_4448051_4448142_4448227_4448370_4449312_4449399_4449674_4449780_4449850_4449994_4450082_4450170_4450276_4450386_4451118_4451295_4451577_4451702_4452162_4452295_4452452_4452546_4452625_4452772_4452848_4452907_4453247_4453303_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033642	chr16	+	2619	12	FSM	ENSMUSG00000004069.18	ENSMUST00000060067.12	2648	12	29	0	3	0	multi-exon	FALSE	canonical	3	184	junction_10	248.960018695956	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501962	4525559	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4523707_4523825_4524431
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033648	chr16	+	2492	11	NNC	ENSMUSG00000004069.18	novel	2505	11	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	251.766479103156	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501970	4525559	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515184_4517618_4517742_4519032_4519149_4520074_4520173_4524431
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033702	chr16	+	3187	17	FSM	ENSMUSG00000022517.18	ENSMUST00000070658.16	3138	17	-49	0	-46	0	multi-exon	FALSE	canonical	3	137	junction_15	100.835804033091	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATGTGTGCCTTTGTTC	2878	False	NA	14	True	AATAAA	-15	NA	4704066	4756160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058_4752104_4754759
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033745	chr16	-	2446	17	FSM	ENSMUSG00000022515.7	ENSMUST00000023157.6	2398	17	-43	-5	-11	5	multi-exon	TRUE	canonical	3	59	junction_1	12.8608842522589	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGGCTCATTTGTGATCA	8180	False	NA	0	True	AATAAA	-18	NA	4782080	4759294	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033764	chr16	-	1356	11	NNC	ENSMUSG00000022540.17	novel	1355	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	151.285822204197	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831385	4826593	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831236_4831326
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033778	chr16	-	3313	16	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-11	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	306.270033358364	132	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATCATTGTACCCAAAT	8099	False	NA	-1	True	AATAAA	-20	NA	4867738	4831765	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867672
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033783	chr16	-	3305	16	FSM	ENSMUSG00000022536.15	ENSMUST00000023189.15	3280	16	-18	-7	-18	7	multi-exon	FALSE	canonical	3	303	junction_6	221.604291976086	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATCATTGTACCCAAAT	8092	False	NA	-1	True	AATAAA	-20	NA	4867745	4831765	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033847	chr16	-	1207	8	NNC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	4	-181	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	166.156061384151	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGTCATGGGAAAGCGG	NA	False	NA	NA	False	NA	NA	NA	5073816	5062923	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_5063250_5065340_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033870	chr16	+	2409	2	FSM	ENSMUSG00000022711.17	ENSMUST00000143174.2	2370	2	-16	-23	-1	23	multi-exon	FALSE	canonical	3	199	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGCCTAGCAGTTCTGCT	NA	False	NA	NA	False	NA	NA	NA	8455585	8462903	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_8455693_8460601
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033879	chr16	-	2882	4	FSM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	-11	-13	-11	13	multi-exon	TRUE	canonical	3	300	junction_3	44.5146667465405	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTGTGTGTAGTTCTGG	NA	False	NA	2	True	AATAAA	-34	NA	8490030	8476430	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_8478968_8481450_8481574_8482118_8482287_8489976
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033885	chr16	-	4810	32	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	-64	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	196.212142832183	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATGACTGCTGTGGAAGCC	NA	False	NA	NA	False	AATAAA	-23	NA	8610236	8507461	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510877_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033898	chr16	+	228	1	Intergenic	novelGene_147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCATGGGCTACTCTAC	NA	False	NA	NA	False	NA	NA	NA	8605620	8605848	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr16_+_8605600_8605800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033906	chr16	+	1796	3	ISM	ENSMUSG00000022507.7	ENSMUST00000023150.7	4072	4	36	14790	36	1	5prime_fragment	FALSE	canonical	3	177	junction_1	10	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTCCGTGTCATAGAAAT	9980	False	NA	9	True	AATAAA	-20	NA	8647999	8661996	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_+_8648550_8649184_8649266_8660831
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033909	chr16	+	235	1	Intergenic	novelGene_148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGCACATATCCCTAAGT	NA	False	NA	NA	False	AAAAAG	-34	NA	8678700	8678935	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr16_+_8678700_8678900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033920	chr16	+	2167	11	NIC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	-3	959	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	41.4305442880009	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTTGAGTGGCATTTTT	NA	False	NA	7	True	ATTAAA	-12	NA	10010807	10070301	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10065308_10065462_10069241
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033940	chr16	+	3094	11	FSM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	-71	-902	-71	902	multi-exon	FALSE	canonical	3	699	junction_1	76.2262422004391	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTGCTCTTGTTGGGAA	NA	False	NA	NA	False	NA	NA	NA	10229740	10243194	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033945	chr16	+	2757	10	NIC	ENSMUSG00000022503.11	novel	2121	11	NA	NA	-9	0	intron_retention	FALSE	canonical	3	699	junction_1	79.9631087779365	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTTGTCATTCTTTC	NA	False	NA	NA	False	AAGAAA	-25	NA	10229802	10242292	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033963	chr16	-	1220	2	FSM	ENSMUSG00000038037.6	ENSMUST00000038099.6	2785	2	0	1565	0	-1565	multi-exon	FALSE	canonical	3	9	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCCTAGAGCGTATGCTT	NA	False	NA	NA	False	AATAAA	-36	NA	10603400	10601671	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_10602786_10603294
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033967	chr16	+	881	2	FSM	ENSMUSG00000037991.10	ENSMUST00000037913.9	3742	2	0	2861	0	-2861	multi-exon	TRUE	canonical	3	158	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATAGTGGCCTGCCTCC	NA	False	NA	14	True	ATTAAA	-22	NA	10652922	10658241	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_10653255_10657692
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033972	chr16	-	2252	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	-15	-2	-15	2	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCCCCATTCATTCTCT	NA	False	NA	-9	True	AATAAA	-15	NA	10811000	10777136	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000033997	chr16	-	1960	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-8	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	907.175424049836	444	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTACTGTTGGTATTTCA	946	False	NA	0	True	ATTAAA	-28	NA	11021203	11010830	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034002	chr16	-	1907	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1194.85699981211	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	1000	False	NA	-3	True	ATTAAA	-25	NA	11021149	11010833	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_11011602_11012323_11012576_11014133_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034043	chr16	+	3480	11	FSM	ENSMUSG00000022545.14	ENSMUST00000023206.14	3480	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	21.466252583998	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGGTTTCTCAGTGTTT	NA	False	NA	11	True	AATAAA	-14	NA	12927547	12966598	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197_12941406_12943114_12943296_12944258_12944388_12945418_12945530_12947997_12948599_12950721_12950815_12962264_12962378_12965389
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034054	chr16	-	2916	24	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_21	74.3588346795189	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	-7	True	ATTAAA	-16	NA	13486040	13355823	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483761_13483846_13485397_13485476_13485874
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034063	chr16	-	191	1	Intergenic	novelGene_149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAAAATCCATCTTTTT	NA	False	NA	-1	True	AATAAA	-11	NA	13380737	13380546	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr16_-_13380500_13380700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034071	chr16	+	2012	8	FSM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	162	829	0	-819	multi-exon	TRUE	canonical	3	82	junction_1	10.7760126660835	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGCCATTATGGTCAGT	NA	False	NA	NA	False	NA	NA	NA	13489883	13520647	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034073	chr16	-	951	4	FSM	ENSMUSG00000022683.14	ENSMUST00000023364.7	1423	4	474	-2	-66	0	multi-exon	FALSE	canonical	3	37	junction_3	8.17856276425687	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTGTGTAAGAGGTAAAT	NA	False	NA	0	True	AATAAA	-20	NA	13548373	13532920	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_13533461_13542972_13543080_13545826_13545978_13548220
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034129	chr16	+	213	1	ISM	ENSMUSG00000022679.14	ENSMUST00000128757.8	3089	4	46005	241	8072	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCAGAACTCTCAGCTCC	8992	False	NA	NA	False	NA	NA	NA	13767029	13767242	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_+_13767000_13767200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034135	chr16	-	3147	10	ISM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	-7	31777	-7	17	5prime_fragment	TRUE	canonical	3	10	junction_6	4.47213595499958	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACTGTAGAAAGGAAATGT	9809	False	NA	NA	False	AAGAAA	-7	NA	13977138	13958813	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_-_13959666_13959751_13959910_13960095_13960522_13963780_13963954_13964587_13964706_13966879_13967107_13969005_13969181_13969889_13970577_13971695_13971896_13977007
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034150	chr16	+	2395	9	FSM	ENSMUSG00000022678.17	ENSMUST00000115795.9	2335	9	-50	-10	-3	0	multi-exon	FALSE	canonical	3	25	junction_8	91.5818452260054	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTGTGCATTGTATAT	NA	False	NA	96	True	AATAAA	-18	NA	13981158	14010792	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009453
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034157	chr16	+	302	1	Intergenic	novelGene_150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTTTTAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	13984681	13984983	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr16_+_13984700_13985000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034163	chr16	-	1154	3	FSM	ENSMUSG00000022677.16	ENSMUST00000230495.2	1147	3	-3	-4	0	0	multi-exon	FALSE	canonical	3	67	junction_2	185.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135211	14117107	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_14118074_14122317_14122452_14135157
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034180	chr16	-	1061	3	FSM	ENSMUSG00000022674.16	ENSMUST00000115776.2	1236	3	6	169	6	-169	multi-exon	FALSE	canonical	3	117	junction_1	698.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGTGCTATTTCTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	15412365	15373537	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_15374408_15398922_15399072_15412323
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034183	chr16	+	204	1	Intergenic	novelGene_151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTTTCATTCACAAATGA	NA	False	NA	NA	False	NA	NA	NA	15401553	15401757	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr16_+_15401600_15401800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034209	chr16	+	1181	1	FSM	ENSMUSG00000071637.6	ENSMUST00000096232.6	3746	1	0	2565	0	-1515	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCTTCCTATGTTCATT	NA	False	NA	8	True	AATAAA	-17	NA	15705149	15706330	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_15705100_15706300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034229	chr16	+	1582	5	FSM	ENSMUSG00000022792.17	ENSMUST00000059955.15	1574	5	-15	7	-2	1	multi-exon	FALSE	canonical	3	300	junction_2	32.9952648117878	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCTTTACACAAGAACAAT	9504	False	NA	17	True	AATAAA	-22	NA	16120826	16127497	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_16121612_16122399_16122568_16124326_16124483_16125073_16125245_16127195
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034262	chr16	+	2875	18	NIC	ENSMUSG00000022779.17	novel	3073	18	NA	NA	-4	0	combination_of_known_junctions	TRUE	canonical	3	287	junction_1	39.4304608859032	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-32	NA	16688616	16710854	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034267	chr16	+	2943	19	FSM	ENSMUSG00000022779.17	ENSMUST00000232581.2	2950	19	12	-5	2	0	multi-exon	FALSE	canonical	3	71	junction_1	102.489023802552	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-32	NA	16688632	16710854	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_16688694_16692935_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034298	chr16	+	1931	8	FSM	ENSMUSG00000063358.18	ENSMUST00000115731.10	1747	8	-162	-22	23	22	multi-exon	FALSE	canonical	3	566	junction_5	32.3728281124773	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTTGAAAGGATAGAATTT	NA	False	NA	NA	False	AATAAA	-17	NA	16801268	16856926	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034317	chr16	-	2333	21	FSM	ENSMUSG00000022771.18	ENSMUST00000023455.14	2333	21	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	124.441592725262	267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGTTCATGACCTGGTA	NA	False	NA	NA	False	AATAAA	-19	NA	16929121	16904418	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034357	chr16	-	2618	4	FSM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	-7	-2	-7	0	multi-exon	FALSE	canonical	3	1494	junction_3	290.114153777823	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTGTATGGGTTTCTTT	NA	False	NA	1	True	AATAAA	-20	NA	17019363	16969876	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_16972147_16977853_16978041_16994275_16994372_17019298
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034373	chr16	+	4480	3	NNC	ENSMUSG00000050240.17	novel	6354	3	NA	NA	19468	18	intron_retention	FALSE	canonical	3	13	junction_1	33.5	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTCATACCCAAATTCACAA	652	False	NA	NA	False	NA	NA	NA	17070995	17079477	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_17071098_17072831_17072931_17075198
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034417	chr16	+	3117	21	FSM	ENSMUSG00000022761.13	ENSMUST00000023444.11	3394	21	277	0	-8	0	multi-exon	FALSE	canonical	2	77	junction_5	14.8690113995518	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCGAGTCTTCT	NA	False	NA	32	True	NA	NA	NA	17326828	17344197	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17337391_17338299_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034439	chr16	+	3207	19	FSM	ENSMUSG00000005899.15	ENSMUST00000163476.10	4532	19	-3	1328	0	152	multi-exon	FALSE	canonical	3	223	junction_5	25.2948660188897	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCTGGGCTGAATCTT	NA	False	NA	4	True	AATAAA	-17	NA	17437217	17461363	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_17437299_17439305_17439390_17441768_17441856_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034476	chr16	+	3116	7	NNC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_1	149.069335098358	59	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTACAGTCTGAGTTT	NA	False	NA	19	True	AATAAA	-28	NA	17577534	17611246	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_17578119_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034482	chr16	+	3212	7	NIC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	164.993350034344	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTACAGTCTGAGTTT	NA	False	NA	19	True	AATAAA	-28	NA	17577534	17611246	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_17578215_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034491	chr16	-	4063	10	FSM	ENSMUSG00000003166.21	ENSMUST00000117945.8	4003	10	-59	-1	-26	1	multi-exon	TRUE	canonical	3	236	junction_7	73.3575717518876	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTCAGTTCTTGCTGTG	NA	False	NA	-1	True	AATAAA	-19	NA	17709583	17658217	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034564	chr16	-	2829	12	NIC	ENSMUSG00000003526.13	novel	2386	14	NA	NA	0	-5	intron_retention	FALSE	canonical	3	102	junction_5	11.3705433554579	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCATCACCTTTCTCTTG	8072	False	NA	-6	True	AATAAA	-14	NA	17907027	17889594	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898940_17899394_17899430_17902410_17902620_17906751
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034568	chr16	+	1904	2	FSM	ENSMUSG00000043811.6	ENSMUST00000059589.6	1938	2	34	0	34	0	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGGCCTCTTGGGCTGC	NA	False	NA	7	True	AATAAA	-16	NA	17945539	17970272	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_17945767_17968595
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034595	chr16	+	2385	12	FSM	ENSMUSG00000022721.20	ENSMUST00000115640.8	2367	12	-17	-1	-6	1	multi-exon	FALSE	canonical	3	222	junction_1	22.0168980933485	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGGTGAACCAGAGCC	252	False	NA	9	True	AATAAA	-23	NA	18066729	18071367	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034600	chr16	+	2374	12	NNC	ENSMUSG00000022721.20	novel	2367	12	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	80.6614186759067	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	267	False	NA	8	True	AATAAA	-22	NA	18066744	18071366	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_18067121_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034666	chr16	+	571	4	FSM	ENSMUSG00000075704.18	ENSMUST00000131303.8	532	4	-39	0	6	0	multi-exon	FALSE	canonical	3	135	junction_1	7.03957069398096	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCCCTGACTGTCTCT	NA	False	NA	12	True	NA	NA	NA	18245172	18256562	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034671	chr16	+	1464	8	FSM	ENSMUSG00000000884.18	ENSMUST00000231621.2	1485	8	25	-4	25	2	multi-exon	FALSE	canonical	3	66	junction_1	85.0267664938998	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCAAGGTGGGAACTTCC	NA	False	NA	19	True	AATAAA	-21	NA	18317487	18383294	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_18317602_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034686	chr16	-	2082	19	ISM	ENSMUSG00000000028.16	ENSMUST00000000028.14	2143	20	157	-2	157	2	intron_retention	TRUE	canonical	3	368	junction_7	53.1151788307469	336	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTCTGTGATCTTATTGG	NA	False	NA	0	True	AATAAA	-23	NA	18630565	18599194	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034696	chr16	+	1993	12	FSM	ENSMUSG00000005262.14	ENSMUST00000005394.13	1996	12	-2	5	-2	0	multi-exon	FALSE	canonical	3	393	junction_10	35.0072011482124	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGTTTGATATGGTAT	NA	False	NA	5	True	AATAAA	-15	NA	18631041	18654006	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034702	chr16	+	1949	12	NIC	ENSMUSG00000005262.14	novel	2078	13	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_2	122.971810248132	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGTTTGATATGGTAT	NA	False	NA	5	True	AATAAA	-15	NA	18631059	18654006	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_18631168_18633579_18633687_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034707	chr16	+	1282	3	FSM	ENSMUSG00000071632.11	ENSMUST00000055413.13	1281	3	-1	0	-1	0	multi-exon	FALSE	canonical	3	86	junction_1	45.5	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655326	18658910	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_18655370_18655455_18655624_18657839
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034732	chr16	+	2932	7	NIC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	5	-5151	intron_retention	FALSE	canonical	3	32	junction_1	23.5613855468835	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAATTACTATTGAAGAA	NA	False	NA	NA	False	TTTAAA	-26	NA	19916317	19942820	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_19916422_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034765	chr16	+	223	1	Intergenic	novelGene_152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGTCACAAGGCTGGAG	2309	False	NA	NA	False	NA	NA	NA	20126138	20126361	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr16_+_20126100_20126400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034769	chr16	-	5717	30	FSM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	94	0	24	0	multi-exon	TRUE	canonical	3	160	junction_25	98.9917903368873	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	-3	True	AATAAA	-20	NA	20245050	20150052	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764_20214873_20215729_20215879_20217562_20217711_20218224_20218399_20218555_20218790_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034787	chr16	+	2614	16	FSM	ENSMUSG00000003235.14	ENSMUST00000003320.14	2554	16	-56	-4	-56	4	multi-exon	TRUE	canonical	3	2657	junction_7	154.998007155648	3552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTACTTGTTAATATTA	NA	False	NA	31	True	AGTAAA	-22	NA	20317510	20328077	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034794	chr16	+	2526	16	NNC	ENSMUSG00000003235.14	novel	2554	16	NA	NA	31	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	764.3793124708	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTTTGTACTTGTTAATA	NA	False	NA	28	True	AGTAAA	-19	NA	20317597	20328074	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324988_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034805	chr16	+	2493	16	NNC	ENSMUSG00000003235.14	novel	2554	16	NA	NA	63	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	764.311355985824	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	27	True	AGTAAA	-18	NA	20317629	20328073	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324093_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034820	chr16	+	2424	17	NNC	ENSMUSG00000003235.14	novel	2554	16	NA	NA	74	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	740.218271757561	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	27	True	AGTAAA	-18	NA	20317640	20328073	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_20317710_20317765_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034847	chr16	+	2461	16	NNC	ENSMUSG00000003235.14	novel	2554	16	NA	NA	87	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_15	746.651565323478	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	27	True	AGTAAA	-18	NA	20317653	20328073	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327716
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034848	chr16	+	2460	16	NNC	ENSMUSG00000003235.14	novel	2554	16	NA	NA	87	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	763.21630543961	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	27	True	AGTAAA	-18	NA	20317653	20328073	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323955_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034849	chr16	+	2485	16	NIC	ENSMUSG00000003235.14	novel	2554	16	NA	NA	87	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_9	764.066855713556	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	27	True	AGTAAA	-18	NA	20317653	20328073	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324109_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034889	chr16	+	1136	3	FSM	ENSMUSG00000115219.3	ENSMUST00000115522.10	1134	3	0	-2	0	2	multi-exon	FALSE	canonical	3	220	junction_2	23	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCTTTATGCTTCTGAT	5899	False	NA	14	True	NA	NA	NA	20430342	20437763	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_20430571_20436375_20436660_20437139
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034906	chr16	+	2934	21	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_15	699.106780113024	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20470430	20482164	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478855_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034909	chr16	+	2929	21	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	695.837042704684	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20470430	20482164	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480481_20480565_20480661_20480842_20480970_20481371_20481491_20481812
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034941	chr16	+	2913	21	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	700.838631569351	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20470453	20482164	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474166_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000034961	chr16	+	5475	33	NIC	ENSMUSG00000045983.17	novel	5440	33	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	839	junction_14	252.911559316567	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	16	True	ATTAAA	-16	NA	20491476	20511633	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035034	chr16	+	4193	16	FSM	ENSMUSG00000005958.16	ENSMUST00000006112.7	4185	16	-8	0	-8	0	multi-exon	FALSE	canonical	3	140	junction_8	11.1167541225945	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGCCCCTGCTCGTTCT	NA	False	NA	11	True	AATAAA	-14	NA	21023496	21042054	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_21024014_21031639_21031705_21033074_21033748_21035945_21036102_21036764_21037116_21037244_21037370_21037543_21037704_21037788_21037898_21038204_21038258_21039169_21039293_21039396_21039645_21040034_21040251_21040376_21040527_21040614_21040809_21040898_21041055_21041157
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035112	chr16	-	2135	9	NNC	ENSMUSG00000022858.17	novel	3403	9	NA	NA	-18	695	at_least_one_novel_splicesite	TRUE	canonical	3	309	junction_2	620.677741968407	78	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	NA	False	NA	-13	True	ATTAAA	-16	NA	22084694	22064502	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_22065617_22065939_22066011_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035126	chr16	-	379	2	Antisense	novelGene_ENSMUSG00000082241.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATCTTTAAAAATGAAAACA	NA	False	NA	NA	False	NA	NA	NA	22223320	22113101	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr16_-_22113279_22223118
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035130	chr16	+	506	1	FSM	ENSMUSG00000082241.5	ENSMUST00000120931.2	205	1	-54	-247	-54	247	mono-exon	FALSE	NA	NA	NA	NA	NA	196	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCATCCAGGAGAGGTCT	NA	False	NA	NA	False	AATAAA	-31	NA	22113722	22114228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_22113700_22114200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035135	chr16	-	3875	13	FSM	ENSMUSG00000013089.16	ENSMUST00000079601.13	3975	13	101	-1	-2	1	multi-exon	TRUE	canonical	3	174	junction_9	424.638105724549	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCAACCTGCCTCTTTC	7587	False	NA	-12	True	AATAAA	-23	NA	22258368	22200057	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594_22231725_22254626_22254678_22254769_22254818_22254950_22255039_22255187_22255311_22258266
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035149	chr16	-	2682	8	FSM	ENSMUSG00000004462.8	ENSMUST00000004576.8	2803	8	121	0	-4	0	multi-exon	FALSE	canonical	3	51	junction_7	24.7526539496479	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGCCAGAGTTGGTT	NA	False	NA	NA	False	AATAAA	-21	NA	22676298	22631963	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676094
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035180	chr16	+	1283	6	ISM	ENSMUSG00000022868.7	ENSMUST00000232556.2	1336	7	1828	0	-524	0	3prime_fragment	FALSE	canonical	3	93	junction_1	9.66643677887566	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCATGTTCCTTGTCT	NA	False	NA	22	True	NA	NA	NA	22712984	22718193	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_+_22713186_22713544_22713630_22713943_22714108_22715257_22715360_22716877_22716962_22717546
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035226	chr16	+	2711	11	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-1	intron_retention	FALSE	canonical	3	441	junction_1	579.353916013347	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6053	False	NA	NA	False	AATAAA	-16	NA	22926507	22932695	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035227	chr16	+	1861	11	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	179	junction_10	702.387962596171	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035228	chr16	+	1865	11	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_10	666.107979234598	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035229	chr16	+	3164	10	ISM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	-1	-1	0	0	intron_retention	FALSE	canonical	3	1315	junction_4	273.717210111296	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035232	chr16	+	2710	11	FSM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	-1	-1	0	0	multi-exon	FALSE	canonical	3	675	junction_10	433.482883168413	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035235	chr16	+	2008	12	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_11	653.897178967119	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035236	chr16	+	1757	10	FSM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	-20	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	631.938131836603	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035239	chr16	+	2001	12	FSM	ENSMUSG00000022884.17	ENSMUST00000123413.8	1965	12	-19	-17	0	0	multi-exon	FALSE	canonical	3	179	junction_11	605.093586095477	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035241	chr16	+	3027	9	ISM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	-20	0	0	0	intron_retention	FALSE	canonical	3	441	junction_1	660.216063118734	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035242	chr16	+	2005	12	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_11	564.272309855287	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035243	chr16	+	1899	11	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	441	junction_1	507.107927368524	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGGTCTGGCCATTTAT	6053	False	NA	NA	False	AATAAA	-20	NA	22926507	22932699	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035244	chr16	+	3024	9	ISM	ENSMUSG00000022884.17	ENSMUST00000147117.8	1947	10	4	189	0	0	intron_retention	FALSE	canonical	3	563	junction_3	488.360122629807	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035256	chr16	+	2573	10	NIC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	441	junction_1	690.354516190552	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035257	chr16	+	2570	10	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	563	junction_3	575.550128674544	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035264	chr16	+	2004	12	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	179	junction_11	686.556372698238	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035265	chr16	+	3167	10	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	441	junction_1	517.640158153648	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035306	chr16	-	1239	11	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	486.513966911537	542	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACAATTTTATTTAACAT	NA	False	NA	-22	True	AATAAA	-27	NA	22946490	22932688	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_22932858_22932936_22933054_22933194_22933276_22933352_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035309	chr16	-	1319	10	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	3	1	intron_retention	FALSE	canonical	0	0	junction_3	509.559165563604	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAAAGTGAATATACAATT	NA	False	NA	-33	True	AATAAA	-16	NA	22946438	22932699	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_22932858_22932936_22933054_22933194_22933276_22933352_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035318	chr16	+	1718	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	-77	-672	-77	672	mono-exon	FALSE	NA	NA	NA	NA	NA	852	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTACCAACTAGCTAATAAA	NA	False	NA	NA	False	AATAAA	-40	NA	24348066	24349784	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_24348100_24349800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035322	chr16	+	203	1	Intergenic	novelGene_153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAGAGCCTGGGACAACA	NA	False	NA	NA	False	NA	NA	NA	24650619	24650822	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr16_+_24650600_24650800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035329	chr16	-	3106	2	FSM	ENSMUSG00000051065.10	ENSMUST00000100023.3	3055	2	-51	0	-51	0	multi-exon	FALSE	canonical	3	119	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGTCATTATTACTT	4746	False	NA	0	True	AATAAA	-24	NA	28748476	28644927	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_28647762_28748204
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035345	chr16	+	3292	30	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	253	junction_5	68.2954691456644	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACGTGTGTTCCAGGCAC	NA	False	NA	9	True	AATAAA	-19	NA	29398195	29470697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035355	chr16	+	1505	4	FSM	ENSMUSG00000022528.9	ENSMUST00000023171.8	1468	4	-30	-7	-30	7	multi-exon	FALSE	canonical	3	729	junction_2	50.3388517946129	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACTGATTATTTCAAAATT	NA	False	NA	23	True	AATAAA	-24	NA	29884127	29886621	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_29884517_29884648_29884745_29884980_29885069_29885689
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035358	chr16	+	247	1	Genic_Genomic	ENSMUSG00000022528.9	novel	NA	NA	NA	NA	-1	5	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAAAATGCCAGCTGATATA	NA	False	NA	NA	False	AATAAA	-37	NA	29884156	29884403	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr16_+_29884200_29884400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035380	chr16	+	3003	1	FSM	ENSMUSG00000046546.4	ENSMUST00000059078.4	3075	1	3	69	3	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTTCAGTTCTGTTG	NA	False	NA	23	True	TATAAA	-24	NA	30418543	30421546	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_30418500_30421500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035385	chr16	-	3479	4	FSM	ENSMUSG00000047434.15	ENSMUST00000055389.9	3470	4	-9	0	-9	0	multi-exon	FALSE	canonical	3	135	junction_2	21.3124898175277	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACAGTGTCTTCTGTTAT	NA	False	NA	-5	True	ATTAAA	-12	NA	30900259	30773961	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_30776553_30826531_30826665_30869449_30869598_30899652
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035403	chr16	-	865	5	FSM	ENSMUSG00000022548.15	ENSMUST00000115230.2	1070	5	208	-3	-2	3	multi-exon	FALSE	canonical	2	5	junction_4	68.1725751310598	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTCCTGTGGATTC	8708	False	NA	-1	True	AATAAA	-15	NA	31133414	31115936	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133369
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035404	chr16	-	978	5	FSM	ENSMUSG00000022548.15	ENSMUST00000023207.15	979	5	38	-37	38	3	multi-exon	FALSE	canonical	3	104	junction_4	27.2614654778499	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTCCTGTGGATTC	8748	False	NA	-1	True	AATAAA	-15	NA	31133374	31115936	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035471	chr16	+	1369	3	FSM	ENSMUSG00000022787.11	ENSMUST00000023474.4	1394	3	25	0	25	0	multi-exon	FALSE	canonical	3	19	junction_1	52	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTAATTTTGGTTTTTTTT	NA	False	NA	18	True	AATAAA	-19	NA	32066095	32075901	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_32066344_32070640_32071137_32075276
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035522	chr16	+	1183	9	ISM	ENSMUSG00000022801.14	ENSMUST00000156928.8	2165	13	-1	9590	0	5532	5prime_fragment	FALSE	canonical	3	60	junction_4	4.89738450603993	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGACGTGAAACAACCCAAAA	NA	False	NA	NA	False	AAGAAA	-2	NA	32734491	32799826	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_+_32734774_32770661_32770807_32772426_32772554_32775669_32775776_32779764_32779902_32782004_32782115_32794249_32794344_32796098_32796220_32799765
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035566	chr16	-	738	2	FSM	ENSMUSG00000097318.3	ENSMUST00000180923.2	737	2	0	-1	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGAATTCTCTCCTTG	NA	False	NA	-2	True	ATTAAA	-16	NA	33201097	33200223	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_33200750_33200885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035595	chr16	-	2997	7	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	19453	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	449.096283910502	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCAATGAACTGGAGATAT	8675	False	NA	NA	False	AAAAAG	-4	NA	33787373	33755698	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_33755724_33775628_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035597	chr16	-	3478	7	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	19453	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	449.096283910502	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCAATGAACTGGAGATAT	8675	False	NA	NA	False	AAAAAG	-4	NA	33787373	33755698	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_33755724_33775147_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035627	chr16	+	239	1	Intergenic	novelGene_154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAGCTGAGCACAAACAAT	672	False	NA	NA	False	NA	NA	NA	34650624	34650863	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr16_+_34650600_34650900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035635	chr16	-	1847	17	FSM	ENSMUSG00000022844.9	ENSMUST00000023550.9	1809	17	-28	-10	-28	10	multi-exon	FALSE	canonical	3	428	junction_7	56.9566378374812	345	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTATGTTTTCACGAGCCC	NA	False	NA	0	True	AATAAA	-24	NA	35311271	35217671	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311098
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035686	chr16	+	3921	14	FSM	ENSMUSG00000022905.13	ENSMUST00000004054.13	5039	14	4	1114	4	886	multi-exon	FALSE	canonical	3	400	junction_10	42.2312596300516	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTTGTGGCTGATTTC	NA	False	NA	10	True	AGTAAA	-21	NA	35803688	35856387	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_35803879_35820551_35820686_35823212_35823321_35829685_35829786_35833262_35833358_35839627_35839760_35840525_35840615_35841057_35841158_35841854_35842019_35843544_35843624_35849891_35850018_35851539_35851668_35853621_35853801_35854090
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035741	chr16	+	2289	6	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	15363	483	-6197	-420	3prime_fragment	FALSE	canonical	3	275	junction_3	16.2061716639063	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTACTTCTATTCATTG	NA	False	NA	26	True	AATAAA	-22	NA	36529702	36546683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_+_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035752	chr16	+	2223	15	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	10	-2	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	69.4050518657669	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTCATGTTATTTCAATG	NA	False	NA	50	True	AATAAA	-17	NA	36648756	36693081	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035759	chr16	+	2273	15	FSM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	-10	-6	-9	-2	multi-exon	FALSE	canonical	3	136	junction_14	52.2779073016196	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTCATGTTATTTCAATG	NA	False	NA	50	True	AATAAA	-17	NA	36648759	36693081	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035776	chr16	-	3107	5	FSM	ENSMUSG00000022828.11	ENSMUST00000023525.9	3084	5	-23	0	-23	0	multi-exon	FALSE	canonical	3	285	junction_4	13.7204227340122	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTGGTTATACTCACTAA	NA	False	NA	NA	False	AATAAA	-36	NA	37360174	37330151	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37360014
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035786	chr16	+	2018	8	FSM	ENSMUSG00000022827.15	ENSMUST00000023524.13	2031	8	13	0	-2	0	multi-exon	FALSE	canonical	3	98	junction_4	11.0896163971859	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGTCATTTCTTTTAA	NA	False	NA	NA	False	ATTAAA	-20	NA	37360259	37392747	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37383977_37384129_37387681_37387754_37390749_37390789_37391391
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035821	chr16	+	449	3	FSM	ENSMUSG00000046516.11	ENSMUST00000050273.9	444	3	-2	-3	-2	3	multi-exon	FALSE	canonical	3	2901	junction_2	455	412	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGTGTTTCTTTTTCT	NA	False	NA	31	True	ATTAAA	-33	NA	38167350	38173128	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_38167570_38169602_38169692_38172987
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035826	chr16	-	931	5	ISM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	25410	-4	10059	4	3prime_fragment	FALSE	canonical	3	158	junction_2	28.8823042709546	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTTTTGTTGAAAT	NA	False	NA	1	True	AATAAA	-24	NA	38228097	38216474	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035830	chr16	-	925	5	NNC	ENSMUSG00000002847.8	novel	1974	11	NA	NA	10065	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	83.929658047677	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTGGTTGTTTTGTTG	NA	False	NA	-3	True	AATAAA	-20	NA	38228091	38216478	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_38216898_38217700_38217866_38221233_38221347_38225898_38225989_38227953
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035886	chr16	+	1897	9	NNC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	-46	46	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	237.230603790911	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGAGTGACATTCACTTA	7024	False	NA	31	True	AGTAAA	-22	NA	38379013	38411754	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408670_38411273
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035920	chr16	+	932	6	ISM	ENSMUSG00000022701.19	ENSMUST00000122014.8	1822	8	3	24006	3	7079	5prime_fragment	FALSE	canonical	3	68	junction_1	7.7614431647729	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGGGAGACACTAATCCA	NA	False	NA	NA	False	AAAAAG	-24	NA	43710264	43735924	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035935	chr16	-	3119	15	FSM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	153	624	-25	-624	multi-exon	FALSE	canonical	3	151	junction_14	86.121532541792	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAATTTTTGTCTTGATGT	NA	False	NA	NA	False	AAAAAG	-13	NA	43959406	43906631	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959310
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035943	chr16	-	2592	15	NNC	ENSMUSG00000052459.14	novel	3896	15	NA	NA	-23	-1140	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_14	112.129662554071	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAGGTGGTCAAACTTA	NA	False	NA	NA	False	GATAAA	-41	NA	43959404	43907147	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959319
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035950	chr16	+	3664	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	-64	887	-41	5	multi-exon	FALSE	canonical	3	958	junction_1	274.815733719887	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCTGTAACTGTCATGA	NA	False	NA	24	True	AATAAA	-24	NA	43960151	43982842	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035964	chr16	+	3086	18	FSM	ENSMUSG00000043065.13	ENSMUST00000050897.7	4627	18	281	1260	-12	94	multi-exon	FALSE	canonical	0	0	junction_1	35.5942143737688	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGATACTTTTTTTTTCTA	6389	False	NA	18	True	AATAAA	-23	NA	44167764	44207600	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000035990	chr16	+	1476	12	FSM	ENSMUSG00000022663.4	ENSMUST00000023343.4	2057	12	-31	612	-31	32	multi-exon	FALSE	canonical	3	353	junction_3	33.1011472673263	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTTTTCATTTCCTGTC	NA	False	NA	19	True	AATAAA	-14	NA	44979116	45008289	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_44979535_44982768_44982811_44987342_44987393_44990228_44990300_44992008_44992117_44995611_44995662_44998592_44998675_45003018_45003054_45003183_45003340_45004044_45004173_45006528_45006598_45008022
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036013	chr16	-	2065	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	28	0	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTTTCTACTGCCTAAAA	NA	False	NA	NA	False	GATAAA	-3	NA	45975440	45973375	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_45973400_45975400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036037	chr16	+	3024	27	FSM	ENSMUSG00000022652.8	ENSMUST00000023330.8	3045	27	34	-13	34	13	multi-exon	FALSE	canonical	0	0	junction_19	334.347850609362	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTTGATTGCTATTG	NA	False	NA	24	True	AATAAA	-29	NA	48251633	48451276	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036056	chr16	-	2597	21	ISM	ENSMUSG00000064061.14	ENSMUST00000121869.8	5820	32	223	17898	-1	3412	5prime_fragment	FALSE	canonical	3	63	junction_8	17.0155076327449	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTATTGTATCTCTTAACC	4420	False	NA	NA	False	AAAAAG	-9	NA	48814305	48762492	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_-_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48771905_48772524_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036060	chr16	-	1578	15	ISM	ENSMUSG00000064061.14	ENSMUST00000114516.8	3331	31	-1	22519	-1	-2856	5prime_fragment	FALSE	canonical	3	44	junction_2	22.4353947764578	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAAATTTAACTATGAA	4420	False	NA	NA	False	TATAAA	-3	NA	48814305	48768760	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_-_48768940_48770363_48770397_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036082	chr16	+	668	6	FSM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	10	-1	10	1	multi-exon	FALSE	canonical	3	9815	junction_1	1495.09793659145	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGCTGATTGATTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	55786647	55791799	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036089	chr16	+	632	5	FSM	ENSMUSG00000098274.8	ENSMUST00000137811.8	639	5	7	0	7	0	multi-exon	FALSE	canonical	3	12575	junction_2	609.402371180159	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786790	55791798	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036094	chr16	-	2296	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	1	-2	1	2	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTTATTTTCTTTCTT	NA	False	NA	NA	False	AATAAA	-18	NA	55850101	55835866	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036101	chr16	-	2210	5	FSM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	-10	0	0	0	multi-exon	FALSE	canonical	3	494	junction_4	790.763357459107	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850069	55835868	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55849965
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036109	chr16	-	2367	6	NNC	ENSMUSG00000071533.12	novel	2200	5	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_4	1006.61305375998	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGTCTTATTTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	55850051	55835869	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55844824_55845001_55849965
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036110	chr16	-	2243	5	NNC	ENSMUSG00000071533.12	novel	2295	5	NA	NA	-5	-1	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_3	822.958800609119	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGTCTTATTTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	55850054	55835869	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_55837681_55838834_55838891_55842417_55842490_55844586_55844802_55849965
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036121	chr16	-	688	1	ISM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	13500	3	8432	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTGGTCTTATTTTCT	2314	False	NA	NA	False	AATAAA	-13	NA	55836559	55835871	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_-_55835900_55836600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036142	chr16	-	597	2	Antisense	novelGene_ENSMUSG00000052917.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	133	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAACAATCATTAAAAATAAG	4059	False	NA	NA	False	NA	NA	NA	55936674	55933748	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr16_-_55934262_55936590
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036171	chr16	-	3574	18	NNC	ENSMUSG00000022749.9	novel	3690	18	NA	NA	-20	0	at_least_one_novel_splicesite	TRUE	canonical	2	10	junction_15	40.5347473650032	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCCTGGAGGATGTC	NA	False	NA	-4	True	AATAAA	-22	NA	57051756	56989224	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_56990804_56991985_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032934_57034526_57034633_57038671_57038784_57051676
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036172	chr16	-	2031	4	NNC	ENSMUSG00000022749.9	novel	3690	18	NA	NA	3673	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	80.5536398239638	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCCTGGAGGATGTC	NA	False	NA	-4	True	AATAAA	-22	NA	56994946	56989224	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_56990804_56991985_56992181_56993386_56993523_56994825
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036182	chr16	+	204	1	Intergenic	novelGene_155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCGAGATCCTTCCCTT	NA	False	NA	NA	False	AAAAAG	-4	NA	57052511	57052715	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr16_+_57052500_57052700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036193	chr16	+	3102	7	FSM	ENSMUSG00000022742.7	ENSMUST00000060077.7	3097	7	0	-5	0	5	multi-exon	FALSE	canonical	3	129	junction_2	26.4916129285394	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTGTTTCCTTTATTGT	NA	False	NA	NA	False	AATAAA	-22	NA	58490654	58500754	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_58491314_58492890_58493035_58493698_58493810_58494742_58494885_58495604_58495824_58498307_58498413_58499032
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036198	chr16	+	2126	5	FSM	ENSMUSG00000022744.13	ENSMUST00000023426.12	2147	5	10	11	-5	-11	multi-exon	FALSE	canonical	3	351	junction_1	33.101170674162	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGTCTAAATTGTTTGAG	NA	False	NA	13	True	AATAAA	-20	NA	58548282	58554603	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_58548448_58549800_58550111_58551664_58551776_58552943_58553082_58553201
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036252	chr16	-	1643	5	FSM	ENSMUSG00000032932.16	ENSMUST00000046283.16	4237	5	30	2564	0	-946	multi-exon	FALSE	canonical	3	50	junction_2	5.78791845139511	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCAGTATTTCTAAAGTAA	4011	False	NA	NA	False	NA	NA	NA	75563679	75554473	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_75555337_75556302_75556471_75557983_75558198_75561831_75562173_75563622
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036261	chr16	-	353	1	FSM	ENSMUSG00000050299.9	ENSMUST00000052867.9	402	1	-60	109	-60	-109	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGAAGAAGACAGGCC	NA	False	NA	NA	False	NA	NA	NA	76200600	76200247	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_76200200_76200600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036294	chr16	-	1234	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114220.9	2644	5	-9	1419	1	-1	multi-exon	FALSE	canonical	3	46	junction_4	113.984648089118	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTCCAGGGTTACTCAATC	3244	False	NA	-5	True	AATAAA	-12	NA	78373544	78341849	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373346
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036332	chr16	-	503	4	NNC	ENSMUSG00000022890.14	novel	809	5	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	2773.78313660042	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84631745	84624758	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_84624884_84625312_84625463_84628216_84628396_84631696
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036352	chr16	+	4782	10	FSM	ENSMUSG00000008976.17	ENSMUST00000009120.8	4987	10	208	-3	208	3	multi-exon	FALSE	canonical	3	317	junction_1	99.7045016753055	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTTTGTTTTCTTC	NA	False	NA	9	True	AATAAA	-18	NA	84632219	84660670	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_84632432_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036377	chr16	-	2023	5	FSM	ENSMUSG00000041079.13	ENSMUST00000039101.12	2009	5	-13	-1	-13	1	multi-exon	FALSE	canonical	3	39	junction_1	7.71362431027076	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGCTTGTTATCAGTAGT	NA	False	NA	-3	True	AATAAA	-18	NA	87237474	87230293	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_87231515_87233460_87233824_87233951_87234020_87234181_87234403_87237324
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036386	chr16	+	1425	7	FSM	ENSMUSG00000025616.15	ENSMUST00000131206.8	1405	7	-16	-4	0	4	multi-exon	FALSE	canonical	3	153	junction_5	32.3045404445464	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCTACCTTCTTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	87251914	87267916	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036397	chr16	-	171	1	ISM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	11828	549	2025	113	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	-24	True	AATAAA	-14	NA	87280933	87280762	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_-_87280800_87280900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036443	chr16	+	206	1	Intergenic	novelGene_156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATAGAAAAGTGAGGCTGG	NA	False	NA	NA	False	NA	NA	NA	90781690	90781896	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr16_+_90781700_90781900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036466	chr16	+	3906	11	FSM	ENSMUSG00000022967.14	ENSMUST00000023689.11	3909	11	3	0	3	0	multi-exon	FALSE	canonical	3	156	junction_4	11.4908659377786	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATATTTTCTTTATTTA	NA	False	NA	24	True	NA	NA	NA	91282128	91304329	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_91282305_91286583_91286708_91289518_91289698_91292036_91292192_91292278_91292421_91293031_91293150_91296291_91296492_91296743_91296878_91298509_91298658_91300272_91300416_91301942
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036486	chr16	-	3299	22	NIC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	6	-2	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	424.919664276008	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	91443834	91418282	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_-_91418633_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036488	chr16	-	3445	22	NIC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	68	junction_21	407.127507368682	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	91443819	91418282	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443614
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036493	chr16	-	3349	22	FSM	ENSMUSG00000022962.16	ENSMUST00000023684.14	3518	22	-40	209	-40	-2	multi-exon	FALSE	canonical	3	1247	junction_21	231.829967404665	1508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	91443880	91418282	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036495	chr16	-	3309	22	FSM	ENSMUSG00000022962.16	ENSMUST00000232289.2	3276	22	-24	-9	-3	-2	multi-exon	FALSE	canonical	3	460	junction_21	338.409230453656	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	91443843	91418282	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036498	chr16	-	3244	22	NNC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	2	34	junction_2	421.087836426552	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	91443819	91418282	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_-_91418637_91418734_91418807_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036504	chr16	-	3442	22	NIC	ENSMUSG00000022962.16	novel	3276	22	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	2	14	junction_21	417.016212564872	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	91443819	91418282	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443614
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036521	chr16	-	1896	11	FSM	ENSMUSG00000022962.16	ENSMUST00000120450.2	1865	11	-30	-1	-13	1	multi-exon	FALSE	canonical	3	1247	junction_10	242.657701299588	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTTGATTTTTTTTTTT	NA	False	NA	-1	True	AATAAA	-23	NA	91443853	91430291	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036528	chr16	-	1882	11	FSM	ENSMUSG00000022962.16	ENSMUST00000231380.2	1852	11	-30	0	-3	0	multi-exon	FALSE	canonical	3	460	junction_10	453.295984981116	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTTGATTTTTTTTTT	NA	False	NA	-2	True	AATAAA	-22	NA	91443843	91430292	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036534	chr16	-	585	4	ISM	ENSMUSG00000022962.16	ENSMUST00000120450.2	1865	11	4	7731	0	19	5prime_fragment	FALSE	canonical	3	1247	junction_3	399.201703403179	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCAGGCAGCCCTTGGG	NA	False	NA	NA	False	TATAAA	-36	NA	91443819	91438023	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_-_91438275_91438481_91438578_91439844_91440035_91443771
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036589	chr16	+	517	4	FSM	ENSMUSG00000051989.12	ENSMUST00000063641.11	517	4	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	48.3482735529983	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTCTGCATTCTCTCT	NA	False	NA	26	True	AATAAA	-16	NA	92098173	92109929	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_92098232_92102175_92102286_92107688_92107858_92109749
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036597	chr16	-	2190	4	FSM	ENSMUSG00000022951.17	ENSMUST00000023672.10	2190	4	2	-2	2	0	multi-exon	FALSE	canonical	3	20	junction_3	123.764112551077	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGTTGTTGGTCGTTTTCT	NA	False	NA	-3	True	AATAAA	-24	NA	92196963	92188840	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92196783
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036636	chr16	+	1926	14	NNC	ENSMUSG00000022945.13	novel	1922	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	250.760948423868	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTGACTTCGCT	4366	False	NA	21	True	AATAAA	-29	NA	93680788	93703003	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688489_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036653	chr16	+	1525	4	FSM	ENSMUSG00000022941.9	ENSMUST00000023660.9	1531	4	6	0	6	0	multi-exon	FALSE	canonical	3	15	junction_3	1.63299316185545	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGACAATCATCTTTTT	NA	False	NA	7	True	AATAAA	-15	NA	94129284	94137794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_+_94129457_94130204_94130281_94134114_94134183_94136585
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036694	chr16	-	3008	23	ISM	ENSMUSG00000022914.18	ENSMUST00000232755.2	9843	41	-123	36620	-44	-29	5prime_fragment	TRUE	canonical	3	75	junction_10	134.456327973924	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGGAAAGAAAGCAAGCCT	NA	False	NA	NA	False	NA	NA	NA	95883770	95837090	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr16_-_95837252_95839090_95839186_95842451_95842584_95844200_95844295_95845663_95845848_95847544_95847734_95848134_95848361_95848518_95848648_95853724_95853860_95855031_95855183_95857314_95857414_95858662_95858704_95859882_95859984_95860781_95860853_95862198_95862300_95865949_95866172_95867224_95867386_95867695_95867795_95869676_95869828_95883013_95883074_95883177_95883208_95883321_95883381_95883453
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036744	chr16	-	3580	8	FSM	ENSMUSG00000005251.16	ENSMUST00000019386.10	3591	8	11	0	11	0	multi-exon	FALSE	canonical	3	41	junction_1	9.512612465478	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGCAGACTATTATTTCTT	NA	False	NA	2	True	AATAAA	-22	NA	97564976	97543132	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_97545445_97547059_97547325_97548492_97548597_97549222_97549382_97551292_97551343_97552693_97552843_97556267_97556560_97564727
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036762	chr16	-	3692	3	FSM	ENSMUSG00000046962.17	ENSMUST00000113734.9	6010	3	-11	2329	-10	0	multi-exon	FALSE	canonical	3	60	junction_2	13	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTTTGGGATGAATT	NA	False	NA	-4	True	AATAAA	-24	NA	97763832	97750963	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_97754294_97757957_97758101_97763613
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036764	chr16	-	3549	2	FSM	ENSMUSG00000046962.17	ENSMUST00000063605.15	5463	2	-17	1931	-10	0	multi-exon	FALSE	canonical	3	32	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTTTGGGATGAATT	NA	False	NA	-4	True	AATAAA	-24	NA	97763832	97750963	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr16_-_97754294_97763613
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036825	chr17	+	696	2	NNC	ENSMUSG00000034377.11	novel	789	3	NA	NA	2767	-113	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGGATGAGGTTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	6171335	6172506	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_6171867_6172341
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036832	chr17	-	815	5	Fusion	ENSMUSG00000092074.3_ENSMUSG00000118494.2	novel	3321	5	NA	NA	116	-2550	multi-exon	TRUE	canonical	3	145	junction_4	3028.61844534765	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6371895	6360818	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr17_-_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6371724
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036837	chr17	-	857	2	ISM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	59	6176	-23	-6176	5prime_fragment	FALSE	canonical	3	2579	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAATGTCTTACAACTA	NA	False	NA	NA	False	NA	NA	NA	6367716	6364444	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_-_6365234_6367648
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036846	chr17	+	227	1	Intergenic	novelGene_157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAGAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	6463280	6463507	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_6463300_6463500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036849	chr17	+	227	1	Intergenic	novelGene_158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAGAGGAAGA	6985	False	NA	NA	False	NA	NA	NA	6680404	6680631	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_6680400_6680600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036854	chr17	+	740	5	Fusion	ENSMUSG00000096255.3_ENSMUSG00000000579.15	novel	771	5	NA	NA	31	351	multi-exon	TRUE	canonical	3	2828	junction_1	2765.51862224791	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6697541	6875299	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr17_+_6697638_6870885_6870928_6874010_6874135_6874472_6874551_6874899
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036862	chr17	+	1054	4	ISM	ENSMUSG00000096255.3	ENSMUST00000179569.3	771	5	66	0	66	0	intron_retention	FALSE	canonical	3	3024	junction_1	2381.31061019394	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6697576	6703695	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_+_6697638_6699278_6699321_6702406_6702531_6702868
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036892	chr17	+	932	6	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-23	351	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	4194.75856754593	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869167	6875299	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_6869236_6870885_6870928_6873123_6873344_6874010_6874135_6874472_6874551_6874899
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036894	chr17	+	863	2	FSM	ENSMUSG00000000579.15	ENSMUST00000149027.8	493	2	-23	-347	-23	347	multi-exon	FALSE	canonical	3	5304	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTACAACTACAGTTTC	NA	False	NA	NA	False	NA	NA	NA	6869167	6871680	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_6869236_6870885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036921	chr17	+	2654	16	NIC	ENSMUSG00000041831.18	novel	2244	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	13.5522035928561	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAACTCCCAGCATTTAT	NA	False	NA	6	True	AATAAA	-15	NA	6930412	7005443	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_6930610_6940859_6941395_6943610_6943830_6954660_6954726_6967051_6967104_6968636_6968704_6970278_6970358_6973292_6973418_6976495_6976631_6982782_6982962_6995637_6995741_7000350_7000522_7001864_7001971_7002776_7002874_7003809_7004016_7005125
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036949	chr17	-	2564	13	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	29	-568	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	257.193547417763	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCATGTAACCGAGACAC	NA	False	NA	-9	True	AATAAA	-16	NA	7050154	7006007	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_7006867_7007028_7007274_7008357_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036981	chr17	+	232	1	Intergenic	novelGene_159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTACATCAATTCTGAG	NA	False	NA	NA	False	AAAAAG	-28	NA	7458411	7458643	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_7458400_7458600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000036992	chr17	-	904	8	NIC	ENSMUSG00000095687.3	novel	1793	9	NA	NA	-4	-523	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	257.416124639638	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATGTGTTTGGCTTTTT	NA	False	NA	-9	True	AAAAAG	-6	NA	8366621	8347430	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_8347719_8349056_8349132_8350874_8350921_8353735_8353850_8356719_8356791_8361349_8361403_8364373_8364435_8366425
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037021	chr17	+	2191	8	FSM	ENSMUSG00000062327.11	ENSMUST00000074667.9	2046	8	-150	5	-150	-5	multi-exon	FALSE	canonical	3	22	junction_5	7.70634511957782	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTTTGTGGATTATT	NA	False	NA	5	True	AATAAA	-15	NA	8653104	8661323	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_8653569_8654022_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657447_8657622_8658741_8658872_8660424
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037054	chr17	-	1823	19	FSM	ENSMUSG00000073460.6	ENSMUST00000163394.3	2092	19	275	-6	-9	6	multi-exon	TRUE	canonical	3	109	junction_10	13.5984067694222	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGGCCAGTGCATTCCT	2965	False	NA	-2	True	GATAAA	-26	NA	13128842	13107609	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113303_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037070	chr17	+	2497	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	-12	-39	-12	39	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	1006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGCTCCTGCTGTCTTT	NA	False	NA	7	True	NA	NA	NA	13135256	13143993	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037076	chr17	+	655	3	FSM	ENSMUSG00000068039.14	ENSMUST00000143961.2	614	3	-41	0	16	0	multi-exon	FALSE	canonical	3	3521	junction_2	31.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCGTGAATTTGGAGCCT	NA	False	NA	NA	False	AATAAA	-25	NA	13135284	13137266	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_13135517_13136684_13136771_13136929
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037089	chr17	+	1855	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	12	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1038.31038051297	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGGGTTCCTGTCCTC	NA	False	NA	0	True	ATTAAA	-15	NA	13135347	13143444	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_13135517_13136684_13136769_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037101	chr17	-	2212	8	FSM	ENSMUSG00000023832.15	ENSMUST00000159697.2	1800	8	-7	-405	-7	0	multi-exon	FALSE	canonical	3	922	junction_2	94.6542580734146	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCTTGTCAGTGAGTT	NA	False	NA	0	True	NA	NA	NA	13179265	13161924	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037116	chr17	-	2561	8	NNC	ENSMUSG00000060475.14	novel	2051	8	NA	NA	-18	0	intron_retention	FALSE	canonical	3	13	junction_2	233.876559103214	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTTTGTTTTTTCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	13211097	13185685	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_13186939_13188291_13188447_13193623_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037119	chr17	-	2106	8	FSM	ENSMUSG00000060475.14	ENSMUST00000159551.8	2060	8	-49	3	0	0	multi-exon	FALSE	canonical	3	121	junction_7	218.990354833733	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTTTGTTTTTTCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	13211433	13185685	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13211195
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037145	chr17	+	1364	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	-29	4526	-29	-8	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCCTCTATTTAGTGGAC	NA	False	NA	23	True	ATTAAA	-20	NA	13226674	13234495	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037178	chr17	-	2755	4	FSM	ENSMUSG00000048826.8	ENSMUST00000053218.7	3250	4	317	178	317	-178	multi-exon	FALSE	canonical	3	62	junction_2	0.816496580927726	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACTGTCTTGTCTCTTCC	NA	False	NA	-3	True	AATAAA	-25	NA	14424039	14415491	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_14417574_14418078_14418355_14419407_14419541_14423775
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037215	chr17	-	1163	5	NNC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	14.4805904575746	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCTTTTCTTTCTTTCT	NA	False	NA	-4	True	GATAAA	-16	NA	15461016	15451842	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_15452674_15453032_15453145_15454190_15454265_15460531_15460624_15460962
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037238	chr17	-	507	4	NNC	ENSMUSG00000014769.11	novel	1758	6	NA	NA	-6	-63	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2398.04605645698	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGCGGGTCATATATTG	NA	False	NA	-76	True	NA	NA	NA	15718566	15696283	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_15696468_15697576_15697640_15714677_15714786_15718414
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037273	chr17	+	2084	10	FSM	ENSMUSG00000116564.2	ENSMUST00000024620.8	3220	10	210	926	-53	-926	multi-exon	FALSE	canonical	3	346	junction_3	38.1895855495244	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTAGTTCTCTCTTTTCT	NA	False	NA	13	True	AATAAA	-22	NA	17594780	17614235	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037278	chr17	+	1610	8	FSM	ENSMUSG00000116564.2	ENSMUST00000232396.2	1596	8	-7	-7	-7	7	multi-exon	FALSE	canonical	3	346	junction_3	41.8120185826896	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCTTTTGAATTAATCT	NA	False	NA	NA	False	AATGAA	-27	NA	17594826	17608023	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037293	chr17	+	796	5	NNC	ENSMUSG00000057409.8	novel	3065	5	NA	NA	-4	-2211	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_4	24.0572234474388	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTTGTCTGAACAGTAAT	1471	False	NA	NA	False	AATAAA	-16	NA	21709255	21727815	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242_21725370_21727601
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037319	chr17	-	2673	6	FSM	ENSMUSG00000071256.5	ENSMUST00000095606.5	2686	6	13	0	13	0	multi-exon	FALSE	canonical	3	33	junction_4	6.49923072370877	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCTTTAGCTGGC	6697	False	NA	NA	False	AATAAA	-20	NA	23783199	23775740	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_23777287_23778356_23778523_23778607_23778679_23778958_23779077_23780119_23780635_23782942
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037344	chr17	+	2790	6	FSM	ENSMUSG00000023902.19	ENSMUST00000095595.9	2698	6	-85	-7	-85	0	multi-exon	FALSE	canonical	3	153	junction_1	55.9335319821661	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	794	False	NA	35	True	AGTAAA	-19	NA	23819744	23829993	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037354	chr17	+	2609	7	FSM	ENSMUSG00000023902.19	ENSMUST00000120967.8	2609	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_6	80.8484521943508	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	879	False	NA	35	True	AGTAAA	-19	NA	23819829	23829993	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240_23828441_23828536
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037367	chr17	+	1607	1	NIC	ENSMUSG00000023902.19	novel	2609	7	NA	NA	1920	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTCCTGATTTTTTTACT	3911	False	NA	32	True	AGTAAA	-16	NA	23828383	23829990	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_23828400_23830000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037376	chr17	-	1432	14	FSM	ENSMUSG00000041319.15	ENSMUST00000115490.9	1431	14	0	-1	0	0	multi-exon	TRUE	canonical	3	69	junction_13	116.170706876108	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	765	False	NA	-21	True	AATAAA	-14	NA	23892845	23887591	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892814
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037388	chr17	-	999	4	FSM	ENSMUSG00000023905.16	ENSMUST00000024698.10	984	4	-15	0	-15	0	multi-exon	FALSE	canonical	3	66	junction_1	6.34209919681348	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGGCCTGATCCCTAAC	NA	False	NA	-1	True	AATAAA	-18	NA	23896457	23894418	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_23895021_23895112_23895248_23895492_23895598_23896300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037394	chr17	+	1021	2	NNC	ENSMUSG00000023906.4	novel	1431	2	NA	NA	1367	220	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCGGAGGTAACTCACAG	1280	False	NA	NA	False	NA	NA	NA	23899999	23901156	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_23900812_23900947
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037397	chr17	-	1009	2	Antisense	novelGene_ENSMUSG00000023906.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAGAGTCATGTTAAAGA	NA	False	NA	NA	False	GGGGCT	-21	NA	23901156	23899999	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr17_-_23900821_23900968
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037400	chr17	+	2020	8	NNC	ENSMUSG00000023908.9	novel	2040	8	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	canonical	3	50	junction_7	153.550231095195	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCTTCTTGTCCCTTTAT	2950	False	NA	33	True	AAAAAG	-44	NA	23945321	23955708	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_23945616_23951310_23951799_23952796_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955364_23955468
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037442	chr17	+	176	1	Intergenic	novelGene_160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTGTTTGTTTGGTTTG	NA	False	NA	3	True	NA	NA	NA	24001074	24001250	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_24001100_24001200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037453	chr17	+	963	5	NNC	ENSMUSG00000039218.18	novel	459	3	NA	NA	413	8	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	96.5673340213967	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGGACGGTAAGTTGGT	NA	False	NA	53	True	NA	NA	NA	24022620	24029010	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_24022972_24025905_24026177_24027039_24027148_24027327_24027493_24028942
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037460	chr17	-	571	4	FSM	ENSMUSG00000055839.7	ENSMUST00000069579.7	537	4	-33	-1	-33	1	multi-exon	FALSE	canonical	3	7596	junction_3	2024.23060829431	1428	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTCTCATTTTTATTTG	NA	False	NA	-2	True	AGTAAA	-19	NA	24048143	24043710	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_24043954_24046441_24046548_24047817_24047953_24048056
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037484	chr17	-	1994	14	FSM	ENSMUSG00000024122.17	ENSMUST00000102927.10	7161	14	-20	5187	-20	14	multi-exon	FALSE	canonical	3	123	junction_7	13.9033008723802	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACCCAACCACACAAAGAA	NA	False	NA	NA	False	AAGAAA	-11	NA	24360589	24297840	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_24298117_24298465_24298619_24299351_24299410_24306977_24307196_24310394_24310569_24312164_24312262_24312513_24312583_24317067_24317144_24319784_24319883_24320575_24320721_24325800_24325939_24326202_24326246_24329821_24330092_24360410
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037524	chr17	-	3133	17	FSM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	-30	1030	-30	-1030	multi-exon	FALSE	canonical	3	665	junction_16	77.1289504660863	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGTGCTTCAACTGAAA	8645	False	NA	-2	True	AATAAA	-21	NA	24470413	24442201	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037534	chr17	-	3134	17	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-10	-1032	combination_of_known_junctions	FALSE	canonical	3	43	junction_16	200.408917902872	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTGTGCTTCAACTGA	8756	False	NA	-4	True	AATAAA	-19	NA	24470302	24442203	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470154
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037552	chr17	+	1647	7	FSM	ENSMUSG00000034681.18	ENSMUST00000115371.9	1646	7	2	-3	2	0	multi-exon	FALSE	canonical	3	629	junction_1	362.779738807019	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGCTGGTTTTACTGT	886	False	NA	NA	False	AATAAA	-21	NA	24633621	24644872	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_24633709_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037569	chr17	+	2229	8	NIC	ENSMUSG00000034681.18	novel	1920	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	495	junction_1	374.654888816743	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGCTGGTTTTACTGT	913	False	NA	NA	False	AATAAA	-21	NA	24633648	24644872	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037572	chr17	+	1799	8	NNC	ENSMUSG00000034681.18	novel	1816	8	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	542.772474600245	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGCTGGTTTTACTGT	919	False	NA	NA	False	AATAAA	-21	NA	24633654	24644872	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_24633709_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641282_24643375_24643518_24644059
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037646	chr17	-	2640	21	NIC	ENSMUSG00000052752.16	novel	2687	21	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	185	junction_18	68.0276414408143	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746834	24727823	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738104_24738221_24746739
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037653	chr17	-	2618	21	NIC	ENSMUSG00000052752.16	novel	3003	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_19	100.719859014993	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746820	24727823	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737769_24738104_24738221_24746739
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037702	chr17	+	1089	6	FSM	ENSMUSG00000041429.4	ENSMUST00000047611.4	1079	6	-9	-1	-7	1	multi-exon	FALSE	canonical	3	194	junction_2	26.3772629360971	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGGCCCGTTGGCTTC	899	False	NA	12	True	AATAAA	-24	NA	24851646	24857812	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_24851829_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037735	chr17	+	3329	12	FSM	ENSMUSG00000041130.11	ENSMUST00000047179.7	3283	12	-42	-4	18	4	multi-exon	FALSE	canonical	3	229	junction_6	142.469309439723	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGTTCTGAGTCTCTG	1194	False	NA	16	True	AATAAA	-24	NA	24888678	24900994	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_24888948_24895527_24895641_24896029_24896160_24896383_24896596_24896808_24897027_24897569_24897679_24898010_24898199_24898294_24898380_24898482_24899250_24899597_24899773_24899854_24900006_24900082
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037776	chr17	-	2505	22	NNC	ENSMUSG00000040688.17	novel	5226	22	NA	NA	-7	-193	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	128.777999839376	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCTCATGTGAATC	NA	False	NA	-24	True	NA	NA	NA	24926612	24919624	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_24919760_24919849_24920009_24920090_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037792	chr17	+	1094	5	FSM	ENSMUSG00000044533.16	ENSMUST00000054289.13	1094	5	-2	2	-2	1	multi-exon	FALSE	canonical	3	8303	junction_1	1140.19655651997	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGTTTTTTTTTGTCTGT	6235	False	NA	2	True	AATAAA	-21	NA	24939081	24940901	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037798	chr17	+	1189	5	NIC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	1	intron_retention	FALSE	canonical	3	3280	junction_1	3156.98942823697	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGTTTTTTTTTGTCTGT	6237	False	NA	2	True	AATAAA	-21	NA	24939083	24940901	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_24939107_24939246_24939427_24939507_24940277_24940596_24940689_24940776
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037804	chr17	+	1407	3	FSM	ENSMUSG00000044533.16	ENSMUST00000129580.2	637	3	-713	-57	0	-1	multi-exon	FALSE	canonical	3	10975	junction_2	36.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTATGTTTTTTTTTGTC	6237	False	NA	-1	True	AATAAA	-18	NA	24939083	24940898	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_24940277_24940596_24940689_24940776
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037813	chr17	-	704	4	FSM	ENSMUSG00000040048.15	ENSMUST00000045602.9	732	4	28	0	28	0	multi-exon	FALSE	canonical	3	2001	junction_1	127.206743357243	787	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	False	NA	NA	False	AATAAA	-22	NA	24943424	24941033	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_24941195_24941354_24941495_24941628_24941768_24943160
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037843	chr17	-	1463	7	FSM	ENSMUSG00000039183.7	ENSMUST00000044252.7	1427	7	-30	-6	-29	5	multi-exon	TRUE	canonical	3	605	junction_4	56.4111888034831	424	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTCTGTCTTGTTTGGGG	NA	False	NA	0	True	AGTAAA	-30	NA	25105352	25101579	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037873	chr17	+	1605	7	FSM	ENSMUSG00000024160.17	ENSMUST00000117890.8	1641	7	36	0	-1	0	multi-exon	FALSE	canonical	3	99	junction_1	37.7388688519174	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25105652	25111123	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_25105735_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037901	chr17	+	1067	2	FSM	ENSMUSG00000038880.14	ENSMUST00000138648.2	899	2	5	-173	5	0	multi-exon	FALSE	canonical	3	669	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGGTTTCATTACA	NA	False	NA	16	True	AATAAA	-16	NA	25114113	25115263	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_25114679_25114761
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037991	chr17	-	2957	7	FSM	ENSMUSG00000015120.16	ENSMUST00000174031.8	824	7	-336	-1797	-3	1407	multi-exon	FALSE	canonical	3	4214	junction_6	321.557148886477	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCGGGTTGTGTCCTCTG	4260	False	NA	0	True	ATTAAA	-20	NA	25492844	25479482	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492294
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037997	chr17	-	2795	7	NIC	ENSMUSG00000015120.16	novel	824	7	NA	NA	-3	1406	combination_of_known_junctions	FALSE	canonical	3	247	junction_6	1729.90957535037	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCGGGTTGTGTCCTCT	4260	False	NA	-1	True	ATTAAA	-19	NA	25492844	25479483	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492455
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000037998	chr17	-	2553	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	2	-1665	2	1406	multi-exon	FALSE	canonical	3	206	junction_6	1745.07048568246	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCGGGTTGTGTCCTCT	3822	False	NA	-1	True	ATTAAA	-19	NA	25493282	25479483	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038034	chr17	-	3120	22	FSM	ENSMUSG00000019214.15	ENSMUST00000170070.3	3208	22	-16	104	-7	0	multi-exon	FALSE	canonical	3	468	junction_21	77.5978060329916	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATGGTGCACTTGGCCT	5667	False	NA	-1	True	TATAAA	-34	NA	25946400	25938003	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946098_25946220
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038073	chr17	-	2361	16	NIC	ENSMUSG00000063011.8	novel	2044	17	NA	NA	0	0	intron_retention	TRUE	canonical	3	35	junction_15	10.4690018626419	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTGTAGTGTTCCTA	6591	False	NA	-2	True	AATAAA	-22	NA	25973352	25967586	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972399_25972747_25972792_25973105_25973197_25973316
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038091	chr17	+	2059	11	FSM	ENSMUSG00000002280.12	ENSMUST00000002350.11	2555	11	11	485	11	51	multi-exon	FALSE	canonical	3	237	junction_8	20.6145579627602	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGTCCCCAGGATATGT	6931	False	NA	62	True	NA	NA	NA	25992760	26001821	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000820_26000989
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038129	chr17	+	3514	6	FSM	ENSMUSG00000025738.9	ENSMUST00000045692.9	3489	6	-18	-7	-18	7	multi-exon	TRUE	canonical	3	16	junction_5	4.22374241638857	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTGGGTTATTATTTTTT	NA	False	NA	4	True	ATTAAA	-16	NA	26028040	26040236	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_26028361_26035390_26036038_26036653_26037163_26037471_26037557_26037869_26037934_26038347
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038132	chr17	+	3083	9	FSM	ENSMUSG00000025737.6	ENSMUST00000026833.6	3099	9	16	0	-6	0	multi-exon	FALSE	canonical	3	89	junction_2	16.5529453572468	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTGTCACTTTCATTG	NA	False	NA	18	True	AATAAA	-20	NA	26042616	26047704	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046331_26046401_26046507_26046626_26046968_26047127_26047313_26047388
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038150	chr17	-	1269	7	FSM	ENSMUSG00000039615.10	ENSMUST00000044911.10	1803	7	405	129	-3	0	multi-exon	FALSE	canonical	3	1378	junction_3	85.5336191213724	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATGTGCTGGTGCAGT	6750	False	NA	-17	True	AATAAA	-17	NA	26051930	26049607	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26051665
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038168	chr17	+	829	6	FSM	ENSMUSG00000025731.17	ENSMUST00000026827.16	1243	6	410	4	-16	-4	multi-exon	FALSE	canonical	3	287	junction_5	67.7542618585724	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTGCTGGGAATACCTG	7178	False	NA	35	True	AATAAA	-36	NA	26094457	26096139	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634_26095714_26095923
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038172	chr17	+	1023	5	FSM	ENSMUSG00000025731.17	ENSMUST00000169308.8	1026	5	-3	6	-2	3	multi-exon	FALSE	canonical	3	348	junction_1	48.8287824955732	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGCTTGCTGGGAATACC	7192	False	NA	33	True	AATAAA	-34	NA	26094471	26096137	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038180	chr17	-	2493	7	FSM	ENSMUSG00000025730.15	ENSMUST00000026826.14	2466	7	-27	0	-14	0	multi-exon	FALSE	canonical	3	152	junction_6	27.4104602904317	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTGTCTGGCTTCATCT	NA	False	NA	-1	True	AGTAAA	-17	NA	26138715	26101087	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338_26138524_26138625
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038231	chr17	+	3500	13	FSM	ENSMUSG00000024180.15	ENSMUST00000025010.14	3464	13	-36	0	-19	0	multi-exon	FALSE	canonical	3	294	junction_7	42.026446699932	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGTCTTTTTTTTTTT	NA	False	NA	20	True	NA	NA	NA	26332253	26342228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_26332542_26335732_26335908_26335992_26336201_26336384_26336513_26336712_26336982_26337083_26337404_26337835_26337927_26338006_26338131_26338372_26338510_26339257_26339437_26339512_26339660_26340513_26340631_26340911
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038248	chr17	+	1066	5	FSM	ENSMUSG00000024181.10	ENSMUST00000025014.10	1068	5	3	-1	3	1	multi-exon	FALSE	canonical	0	0	junction_2	613.108677152754	611	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGAGTCCTGTGAGTTCT	NA	False	NA	22	True	AGTAAA	-22	NA	26342476	26345588	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345244
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038319	chr17	+	389	1	Intergenic	novelGene_161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGTACCATATGTCCTG	NA	False	NA	NA	False	AATAAA	-37	NA	26489430	26489819	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_26489400_26489800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038322	chr17	-	2006	4	FSM	ENSMUSG00000024190.8	ENSMUST00000025025.7	1990	4	-16	0	-16	0	multi-exon	FALSE	canonical	3	466	junction_2	22.365648262955	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCGTGCTTTCTTTGGT	NA	False	NA	0	True	AATAAA	-20	NA	26727509	26724563	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_26725625_26725958_26726179_26726547_26726694_26726930
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038330	chr17	-	1950	4	NNC	ENSMUSG00000024190.8	novel	2313	3	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	237.31132856791	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCCGTGCTTTCTTTGG	NA	False	NA	-1	True	AATAAA	-19	NA	26727450	26724564	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_26725625_26725958_26726179_26726543_26726694_26726930
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038364	chr17	+	1102	6	FSM	ENSMUSG00000024191.16	ENSMUST00000015725.16	1098	6	0	-4	0	4	multi-exon	FALSE	canonical	3	79	junction_1	9.09945053286186	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGTAAATGCTTAACATTA	1994	False	NA	19	True	AATAAA	-19	NA	27000039	27011499	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_27000151_27002418_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038372	chr17	+	826	3	FSM	ENSMUSG00000024301.11	ENSMUST00000236476.2	819	3	10	-17	10	17	multi-exon	FALSE	canonical	3	106	junction_1	42	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGACTTATTTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	27136074	27140499	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_27136260_27139770_27139906_27139993
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038374	chr17	+	2331	11	NNC	ENSMUSG00000024301.11	novel	2631	11	NA	NA	10	-294	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	115.545185966357	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTTCTTAATCTTAGAT	NA	False	NA	9	True	AATAAA	-22	NA	27136074	27151263	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_27136260_27139770_27139906_27139993_27140094_27140780_27140835_27141649_27141698_27141878_27142277_27142982_27143767_27144415_27144707_27144799_27144874_27145193_27145270_27151077
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038394	chr17	-	670	6	FSM	ENSMUSG00000024194.17	ENSMUST00000114935.9	662	6	-6	-2	-4	1	multi-exon	FALSE	canonical	3	227	junction_5	278.895392575783	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTCTCTGTGACATGG	9272	False	NA	-16	True	AATAAA	-19	NA	27158523	27156944	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158424
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038444	chr17	-	2004	6	FSM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	383	0	-39	0	multi-exon	TRUE	canonical	3	126	junction_3	5.45527267879434	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGCCTGGCATCTTTACA	NA	False	NA	0	True	AATAAA	-20	NA	27247600	27238783	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038448	chr17	-	875	1	ISM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	8323	2	7892	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCGCCTGGCATCTTTA	5411	False	NA	-2	True	AATAAA	-18	NA	27239660	27238785	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_-_27238800_27239700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038464	chr17	-	2634	9	FSM	ENSMUSG00000044857.9	ENSMUST00000055117.9	2627	9	-7	0	-7	0	multi-exon	FALSE	canonical	3	431	junction_7	66.5158580715907	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTTTATTTGTGGTGC	7986	False	NA	-1	True	AATAAA	-19	NA	27423450	27408573	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_27409765_27411905_27412009_27412076_27412179_27412811_27412958_27414298_27414379_27415109_27415187_27418336_27418413_27420610_27420652_27422632
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038523	chr17	+	722	6	NNC	ENSMUSG00000024217.11	novel	984	7	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_1	811.755529700907	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28059135	28070942	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_28059180_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038558	chr17	+	2269	11	FSM	ENSMUSG00000002257.9	ENSMUST00000002327.6	2277	11	8	0	8	0	multi-exon	FALSE	canonical	3	110	junction_2	14.7461859475595	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGCCCTTCCCTCCCTC	NA	False	NA	17	True	AATAAA	-22	NA	28426759	28447582	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_28426913_28435938_28436080_28436574_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28443161_28444818_28444986_28445074_28445274_28446780_28446872_28447042
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038564	chr17	+	2268	11	NIC	ENSMUSG00000002257.9	novel	2277	11	NA	NA	-1	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	42.568650436677	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGCTCCTGCCCTTCCCT	NA	False	NA	12	True	AATAAA	-17	NA	28426798	28447577	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_28426913_28435895_28436080_28436574_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28443161_28444818_28444986_28445074_28445274_28446780_28446872_28447042
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038569	chr17	+	1958	9	NIC	ENSMUSG00000007570.17	novel	2025	10	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_3	35.076478942448	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGGTGGCTCAGCCCTG	307	False	NA	17	True	AATAAA	-19	NA	28532493	28545546	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038573	chr17	+	2024	10	FSM	ENSMUSG00000007570.17	ENSMUST00000114803.9	2025	10	1	0	1	0	multi-exon	FALSE	canonical	3	100	junction_4	20.9655802580218	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGGTGGCTCAGCCCTG	307	False	NA	17	True	AATAAA	-19	NA	28532493	28545546	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038607	chr17	+	1068	5	FSM	ENSMUSG00000037805.16	ENSMUST00000150103.3	1022	5	-41	-5	-9	0	multi-exon	FALSE	canonical	3	5482	junction_3	1550.72344004339	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGTGTGCCTGTGATTG	NA	False	NA	1	True	AATAAA	-20	NA	28547532	28550007	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_28547593_28547784_28547860_28547940_28548497_28549498_28549672_28549803
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038633	chr17	+	2450	1	NIC	ENSMUSG00000037805.16	novel	830	6	NA	NA	0	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547556	28550006	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_28547600_28550000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038648	chr17	-	2944	7	NIC	ENSMUSG00000024222.18	novel	3543	11	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_6	192.900377282046	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTTCATGGCTTTT	NA	False	NA	-11	True	AATAAA	-18	NA	28637496	28618067	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28637368
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038661	chr17	-	2896	7	NNC	ENSMUSG00000024222.18	novel	1414	7	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	204.007080487146	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCATTGTTCATGGCTT	NA	False	NA	-13	True	AATAAA	-16	NA	28637496	28618069	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28637414
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038674	chr17	-	3485	11	NNC	ENSMUSG00000024222.18	novel	3543	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	217.249165706108	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCATTGTTCATGGCT	NA	False	NA	-14	True	AATAAA	-15	NA	28705067	28618070	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_28620123_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28647325_28647441_28648190_28648338_28656965_28657111_28659901_28660028_28704925
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038695	chr17	-	2526	16	FSM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	187	1940	-35	2	multi-exon	FALSE	canonical	3	554	junction_1	86.150875406657	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTTCTATGCTCACAT	NA	False	NA	0	True	ATTAAA	-41	NA	28841496	28808561	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038725	chr17	+	4011	8	FSM	ENSMUSG00000005936.20	ENSMUST00000233197.2	4196	8	185	0	-9	0	multi-exon	FALSE	canonical	3	151	junction_2	164.609370626217	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTTGTTATTTAATAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	29171416	29188523	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_29171544_29176852_29177032_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038733	chr17	-	3356	14	FSM	ENSMUSG00000024006.18	ENSMUST00000119274.3	3354	14	-2	0	-2	0	multi-exon	FALSE	canonical	3	151	junction_13	173.563487011723	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTGGATTTCTTTTAT	NA	False	NA	2	True	AATAAA	-21	NA	29226971	29189853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219119_29226684
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038752	chr17	+	2584	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	34	0	-11	0	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	2046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGAGTATATTTTTATC	NA	False	NA	18	True	ATTAAA	-20	NA	29251635	29262347	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038757	chr17	+	2553	7	FSM	ENSMUSG00000071172.14	ENSMUST00000037776.16	2594	7	41	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	890.897051042125	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTGTGTCTAGAAGGT	NA	False	NA	15	True	AATAAA	-17	NA	29251646	29261871	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29258427_29258884_29259748_29259788_29260180_29260268_29260357
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038771	chr17	+	1917	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	1	-5	1	0	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTTGTCATTAGAGCAAA	4648	False	NA	29	True	NA	NA	NA	29312743	29319701	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_29312836_29317370_29317812_29318317
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038780	chr17	+	2448	1	NIC	ENSMUSG00000023067.15	novel	1913	3	NA	NA	3	-3358	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTCCAGCTGATTTTAA	4650	False	NA	NA	False	NA	NA	NA	29312745	29315193	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_29312700_29315200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038829	chr17	+	202	1	Intergenic	novelGene_162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTGCCTCTGCCTCCC	NA	False	NA	NA	False	NA	NA	NA	29572940	29573142	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_29572900_29573100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038833	chr17	+	2756	6	FSM	ENSMUSG00000024014.9	ENSMUST00000024811.9	2698	6	-59	1	-59	-1	multi-exon	FALSE	canonical	3	1677	junction_4	112.874443520223	630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAGTTTTCCATTCAT	NA	False	NA	16	True	AATAAA	-17	NA	29709667	29715085	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_29710200_29710298_29710406_29710493_29710545_29710638_29711006_29712695_29712873_29713563
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038843	chr17	+	1118	1	ISM	ENSMUSG00000024014.9	ENSMUST00000024811.9	2698	6	4241	1	1587	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAGTTTTCCATTCAT	NA	False	NA	16	True	AATAAA	-17	NA	29713967	29715085	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_+_29714000_29715100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038856	chr17	+	1968	9	NNC	ENSMUSG00000042203.9	novel	3595	13	NA	NA	0	-22088	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	44.8857925740428	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATATGTATTTATGTATA	NA	False	NA	NA	False	AATAAA	-24	NA	29768764	29803780	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29802942
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038875	chr17	+	3732	24	FSM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	30	2618	4	2	multi-exon	TRUE	canonical	3	368	junction_15	33.7979652859003	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGCTCTGTGCTGGGCTG	NA	False	NA	18	True	ATTAAA	-18	NA	29879598	29922335	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038887	chr17	+	2688	6	FSM	ENSMUSG00000044477.13	ENSMUST00000226208.3	3039	6	351	0	20	0	multi-exon	FALSE	canonical	3	90	junction_1	13.1301180497359	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGATTGTCTGTGTTGGC	NA	False	NA	7	True	ATTAAA	-16	NA	30224057	30428996	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_30224283_30279783_30279825_30354296_30354480_30372276_30372343_30411536_30411705_30426991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038913	chr17	+	3431	23	ISM	ENSMUSG00000033826.11	ENSMUST00000235507.2	13457	83	31	122270	14	9492	5prime_fragment	TRUE	canonical	3	31	junction_2	9.57527808542515	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGATGAATTTAAAAAGGT	231	False	NA	NA	False	GATAAA	-1	NA	30845940	30913017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_+_30846117_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942_30877045_30880959_30881107_30882271_30882470_30887247_30887325_30889585_30889686_30891213_30891334_30892753_30892890_30896060_30896249_30902604_30902686_30903104_30903222_30905356_30905477_30909154_30909291_30912922
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038921	chr17	+	176	1	Intergenic	novelGene_163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCTGTGGGCAAATCAAA	NA	False	NA	NA	False	NA	NA	NA	31339766	31339942	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_31339800_31339900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038932	chr17	+	1370	2	Antisense	novelGene_ENSMUSG00000024033.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	33	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGTAGTTGACCTTCTC	6042	False	NA	12	True	AATAAA	-23	NA	31477086	31478655	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr17_+_31477258_31477456
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038938	chr17	+	1567	1	Antisense	novelGene_ENSMUSG00000024033.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTTGTAGTTGACCTTC	6042	False	NA	10	True	AATAAA	-21	NA	31477086	31478653	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr17_+_31477100_31478700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038941	chr17	+	2766	20	NIC	ENSMUSG00000024036.17	novel	3389	20	NA	NA	-44	14	combination_of_known_junctions	TRUE	canonical	3	25	junction_1	25.6401693159089	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCCACATATAATACAAATG	NA	False	NA	NA	False	AATAAA	-27	NA	31515133	31569683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_31515230_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31544639_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038958	chr17	-	3725	11	FSM	ENSMUSG00000024037.14	ENSMUST00000171171.9	4154	11	429	0	-13	0	multi-exon	FALSE	canonical	3	400	junction_7	39.3020355706928	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACGTTGTCTCTGTGTCTT	NA	False	NA	0	True	ATTAAA	-23	NA	31731296	31713295	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722641_31728742_31728887_31729551_31729621_31731140
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000038997	chr17	-	2484	17	FSM	ENSMUSG00000024039.16	ENSMUST00000236853.2	6226	17	-2	3744	-2	2	multi-exon	FALSE	canonical	3	120	junction_2	62.6156118212543	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTGTCGACCTTATTTCC	1909	False	NA	-14	True	NA	NA	NA	31856175	31831611	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039026	chr17	-	956	9	FSM	ENSMUSG00000061613.14	ENSMUST00000237323.2	975	9	20	-1	3	0	multi-exon	FALSE	canonical	3	177	junction_6	2395.95355495469	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877709	31866054	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31871475_31871543_31873952_31874041_31877626
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039050	chr17	-	1416	7	NIC	ENSMUSG00000002076.13	novel	3115	9	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	3	97	junction_4	419.803393136464	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253494	32165055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32241739_32241844_32252234_32252386_32253418
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039066	chr17	+	1427	13	NIC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	-2	7	combination_of_known_junctions	FALSE	canonical	2	13	junction_2	191.31104690181	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAAGAGGAGTCACTTCC	NA	False	NA	NA	False	AAGAAA	-9	NA	32255381	32275596	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_32255579_32264902_32265204_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884_32274972_32275529
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039068	chr17	+	2299	15	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	-2	34	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	181.227236431199	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCTTTTTAATTACTTTA	NA	False	NA	17	True	TATAAA	-17	NA	32255381	32279581	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272940_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039094	chr17	+	185	1	Intergenic	novelGene_164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTAAAAGAAATGTTTA	NA	False	NA	NA	False	AATAAA	-6	NA	32331640	32331825	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_32331600_32331800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039108	chr17	-	2076	10	NIC	ENSMUSG00000024002.19	novel	2118	11	NA	NA	-11	-5	combination_of_known_junctions	FALSE	canonical	3	87	junction_9	69.0524938983397	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAGTGGAGGAAAATAAA	NA	False	NA	35	True	NA	NA	NA	32503707	32432588	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32503491
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039112	chr17	-	1914	9	FSM	ENSMUSG00000024002.19	ENSMUST00000127893.8	1910	9	-9	5	-9	-5	multi-exon	FALSE	canonical	3	148	junction_8	42.5850252436229	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAGTGGAGGAAAATAAA	NA	False	NA	35	True	NA	NA	NA	32503705	32432588	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32503491
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039126	chr17	-	2109	14	NNC	ENSMUSG00000002625.11	novel	2102	14	NA	NA	-2	1	intron_retention	TRUE	canonical	0	0	junction_11	104.63857209094	216	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTCGTTTGTGCTGTGGT	NA	False	NA	1	True	AATAAA	-18	NA	32569583	32540396	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557760_32557798_32564297_32564373_32569460
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039136	chr17	-	2006	15	NNC	ENSMUSG00000002625.11	novel	1987	15	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	112.646390016163	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32569583	32540397	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557329_32557430_32557489_32557760_32557798_32564297_32564373_32569460
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039162	chr17	+	504	1	Intergenic	novelGene_165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTATTAAAAGGAATAG	NA	False	NA	NA	False	NA	NA	NA	32588586	32589090	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_32588600_32589100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039191	chr17	-	3104	4	FSM	ENSMUSG00000024298.16	ENSMUST00000159086.10	10851	4	-9	7756	-9	0	multi-exon	FALSE	canonical	3	18	junction_3	1.24721912892465	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTTGTATATCATGTT	NA	False	NA	NA	False	AATAAA	-45	NA	33007270	32992225	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_32994983_32996130_32996192_32996374_32996502_33007111
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039199	chr17	+	198	1	Intergenic	novelGene_166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTGGGTGTTAGCTTTC	NA	False	NA	NA	False	NA	NA	NA	33056096	33056294	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_33056100_33056300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039202	chr17	-	844	2	Genic_Genomic	ENSMUSG00000117468.2	novel	816	1	NA	NA	-18	75	multi-exon	TRUE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAACACAAACATGC	NA	False	NA	NA	False	AATAAA	-34	NA	33072012	33071103	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr17_-_33071900_33071964
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039204	chr17	-	2546	4	FSM	ENSMUSG00000095325.4	ENSMUST00000228075.3	5337	4	14	2777	14	1866	multi-exon	FALSE	canonical	3	147	junction_3	10.4986771653491	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTTGTCATGGTGTCTC	NA	False	NA	-2	True	NA	NA	NA	33110602	33100969	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_33103140_33104676_33104738_33104930_33105058_33110414
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039218	chr17	+	2204	4	FSM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	0	172	0	-172	multi-exon	FALSE	canonical	3	72	junction_1	5.18544972870135	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATAAGGTCAGTGTCTC	NA	False	NA	70	True	AATAAA	-20	NA	33184787	33198035	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_33184904_33194887_33195015_33195200_33195259_33196132
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039265	chr17	+	1218	7	NIC	ENSMUSG00000073423.11	novel	1211	7	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	175.009206107057	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTACCTATGCCTTC	4926	False	NA	29	True	AATACA	-19	NA	33848072	33850690	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_33848191_33848595_33848673_33848754_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039272	chr17	-	2491	15	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	1	1	intron_retention	FALSE	canonical	0	0	junction_12	499.910221531663	167	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCCTTTTTTGTTTTTGT	5741	False	NA	-1	True	AATAAA	-20	NA	33904392	33865205	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889048_33889108_33896247_33896415_33904240
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039289	chr17	-	2470	15	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_12	499.910221531663	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5756	False	NA	-5	True	AATAAA	-16	NA	33904377	33865209	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889050_33889108_33896247_33896415_33904240
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039317	chr17	+	928	2	FSM	ENSMUSG00000090952.3	ENSMUST00000170103.3	925	2	-6	3	-6	-3	multi-exon	FALSE	canonical	3	20	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACCTCTCTGATTTCATT	3471	False	NA	16	True	NA	NA	NA	33978959	33980841	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_33979562_33980515
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039320	chr17	-	1935	7	FSM	ENSMUSG00000002289.17	ENSMUST00000002360.17	3308	7	228	1145	-59	13	multi-exon	FALSE	canonical	3	124	junction_1	6.14862224856557	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTTGTTTCATTTGA	NA	False	NA	2	True	AATAAA	-21	NA	34000576	33993868	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_33994543_33995923_33996206_33996293_33996390_33997345_33997460_33999503_33999622_33999756_33999868_34000036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039330	chr17	+	2644	11	FSM	ENSMUSG00000042099.17	ENSMUST00000048560.11	2641	11	-1	-2	0	2	multi-exon	FALSE	canonical	3	204	junction_2	56.7176339421877	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTATTGTGTGGATGGAAGC	NA	False	NA	15	True	AATAAA	-18	NA	34029492	34041894	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_34029540_34035159_34035220_34036167_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039338	chr17	-	328	4	FSM	ENSMUSG00000067288.14	ENSMUST00000087342.13	392	4	64	0	-4	0	multi-exon	FALSE	canonical	3	4589	junction_1	7337.59253585413	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTCCAGCAGCGTC	NA	False	NA	-11	True	AATAAA	-28	NA	34043472	34042009	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_34042091_34042170_34042305_34043272_34043321_34043407
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039349	chr17	+	338	2	FSM	ENSMUSG00000041881.14	ENSMUST00000173182.2	610	2	-5	277	-5	0	multi-exon	FALSE	canonical	3	8081	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTTCTCTTGAACTT	4091	False	NA	11	True	NA	NA	NA	34043562	34044820	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_34043655_34044574
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039397	chr17	+	2479	8	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	-2	0	combination_of_known_junctions	TRUE	canonical	3	13	junction_1	222.120210145547	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5536	False	NA	12	True	AATAAA	-23	NA	34128385	34134564	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_34128438_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039399	chr17	+	2509	8	NNC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	222.120210145547	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5536	False	NA	12	True	AATAAA	-23	NA	34128385	34134564	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_34128468_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039422	chr17	+	2551	8	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	219.15347338785	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5636	False	NA	12	True	AATAAA	-23	NA	34128485	34134564	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132779_34133037_34134316
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039426	chr17	+	2612	8	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	220.781728022433	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5636	False	NA	12	True	AATAAA	-23	NA	34128485	34134564	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_34128671_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039466	chr17	+	2636	8	FSM	ENSMUSG00000024308.16	ENSMUST00000234247.2	2589	8	-46	-1	-46	0	multi-exon	FALSE	canonical	3	105	junction_6	40.4101421902563	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGGCCTCTCATTCTCCC	551	False	NA	13	True	AATAAA	-18	NA	34138564	34148266	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145603_34145681_34147113
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039488	chr17	+	2925	18	FSM	ENSMUSG00000041354.17	ENSMUST00000047503.16	3252	18	327	0	5	0	multi-exon	FALSE	canonical	3	51	junction_2	23.5177912481234	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCCCCATCCTTCAGT	3561	False	NA	12	True	AATAAA	-18	NA	34148882	34156661	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_34149019_34149218_34149416_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039494	chr17	+	2782	17	NIC	ENSMUSG00000041354.17	novel	943	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	27.6331294599435	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCCCCATCCTTCAGT	4533	False	NA	12	True	AATAAA	-18	NA	34149854	34156661	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_34150045_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039501	chr17	-	572	5	FSM	ENSMUSG00000024309.16	ENSMUST00000174048.8	560	5	-12	0	-6	0	multi-exon	FALSE	canonical	3	138	junction_4	444.939602642876	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACTTTACAGCCAGTCT	NA	False	NA	-15	True	AATAAA	-17	NA	34159311	34157892	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997_34159140_34159270
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039516	chr17	+	2214	15	NNC	ENSMUSG00000024312.11	novel	2229	15	NA	NA	17	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	77.9152142539883	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTCTGGACCATCCTG	1996	False	NA	11	True	ATTAAA	-14	NA	34159650	34168669	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162429_34162531_34162683_34162774_34162911_34163455_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039558	chr17	-	541	5	FSM	ENSMUSG00000008668.16	ENSMUST00000008812.9	560	5	16	3	-1	0	multi-exon	FALSE	canonical	3	20050	junction_4	1387.25833481007	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTCCGTCTCAGTTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	34174635	34170975	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051_34174151_34174591
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039578	chr17	-	2349	5	NIC	ENSMUSG00000024325.9	novel	2034	7	NA	NA	-3	0	intron_retention	FALSE	canonical	3	80	junction_2	3.11247489949718	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCAGTTCTCTGTGTGTG	NA	False	NA	2	True	NA	NA	NA	34243629	34240057	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_34240458_34240656_34242169_34242266_34242428_34243262_34243393_34243483
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039580	chr17	-	1808	6	ISM	ENSMUSG00000024325.9	ENSMUST00000025183.9	2034	7	25	292	-3	0	intron_retention	FALSE	canonical	3	63	junction_3	8.8090862182181	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCAGTTCTCTGTGTGTG	NA	False	NA	2	True	NA	NA	NA	34243629	34240057	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_-_34240458_34240656_34240931_34241269_34241660_34241952_34242169_34242266_34242428_34243262
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039581	chr17	-	2010	6	NIC	ENSMUSG00000024325.9	novel	2034	7	NA	NA	-3	0	intron_retention	FALSE	canonical	3	78	junction_2	4.01995024844836	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCAGTTCTCTGTGTGTG	NA	False	NA	2	True	NA	NA	NA	34243629	34240057	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_34240458_34240656_34240931_34241269_34242169_34242266_34242428_34243262_34243393_34243483
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039584	chr17	-	1721	7	FSM	ENSMUSG00000024325.9	ENSMUST00000025183.9	2034	7	21	292	-7	0	multi-exon	FALSE	canonical	3	63	junction_3	8.5764535535124	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCAGTTCTCTGTGTGTG	NA	False	NA	2	True	NA	NA	NA	34243633	34240057	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_34240458_34240656_34240931_34241269_34241660_34241952_34242169_34242266_34242428_34243262_34243393_34243483
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039594	chr17	-	980	9	FSM	ENSMUSG00000073422.12	ENSMUST00000045467.14	965	9	-15	0	-11	0	multi-exon	FALSE	canonical	3	92	junction_8	37.2237743250198	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTTCTTCTTGTGTC	NA	False	NA	-1	True	AATAAA	-23	NA	34247045	34245006	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596_34246815_34246975
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039608	chr17	-	2754	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	-434	0	-372	0	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTTGTCTTTATGTG	NA	False	NA	-2	True	AATAAA	-26	NA	34251028	34247242	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039693	chr17	-	881	6	FSM	ENSMUSG00000096727.4	ENSMUST00000174576.4	1352	6	425	46	-1	0	multi-exon	FALSE	canonical	2	4	junction_1	3.70944739819828	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATTAGTTGCAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	34406313	34401006	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_34401326_34402062_34402205_34402588_34402719_34403255_34403388_34404703_34404772_34406223
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039730	chr17	-	1781	8	FSM	ENSMUSG00000015474.17	ENSMUST00000171376.8	1750	8	-30	-1	-28	0	multi-exon	TRUE	canonical	3	52	junction_2	8.14160391358572	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGGCTTGGCTTATTCCC	4187	False	NA	-1	True	AATAAA	-16	NA	34846152	34835636	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039814	chr17	-	2592	18	FSM	ENSMUSG00000024371.15	ENSMUST00000025230.15	2641	18	47	2	-27	-1	multi-exon	TRUE	canonical	1	4	junction_13	3.65842630716852	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTGTCTGTCTTATGTC	NA	False	NA	-2	True	AATAAA	-16	NA	35101029	35081582	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_35082008_35082154_35082205_35082320_35082451_35082599_35082692_35082838_35082916_35083020_35083187_35083283_35083402_35083487_35083583_35083704_35083846_35085493_35085584_35091342_35091484_35092437_35092577_35094863_35094998_35095129_35095232_35095309_35095487_35098857_35099044_35100547_35100773_35100925
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039822	chr17	+	3780	27	FSM	ENSMUSG00000013787.16	ENSMUST00000078061.13	3746	27	-30	-4	0	0	multi-exon	TRUE	canonical	3	123	junction_9	83.6524314646073	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	6670	False	NA	19	True	AATAAA	-20	NA	35117444	35133027	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_35117517_35118162_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039832	chr17	+	3899	28	NIC	ENSMUSG00000013787.16	novel	3882	28	NA	NA	13	0	combination_of_known_junctions	TRUE	canonical	3	35	junction_14	98.9641965990974	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	6683	False	NA	19	True	AATAAA	-20	NA	35117457	35133027	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_35117517_35118162_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124585_35124688_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125928_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039840	chr17	+	4027	27	FSM	ENSMUSG00000013787.16	ENSMUST00000013931.12	4026	27	-1	0	-1	0	multi-exon	FALSE	canonical	3	188	junction_9	70.6987525311972	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	7171	False	NA	19	True	AATAAA	-20	NA	35117945	35133027	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124585_35124688_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039843	chr17	+	1029	5	ISM	ENSMUSG00000013787.16	ENSMUST00000013931.12	4026	27	12233	0	229	0	3prime_fragment	FALSE	canonical	3	414	junction_3	11.4972822875669	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	1750	False	NA	19	True	AATAAA	-20	NA	35130179	35133027	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_+_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039859	chr17	+	2935	5	FSM	ENSMUSG00000007038.6	ENSMUST00000173269.2	3619	5	52	632	52	-600	multi-exon	FALSE	canonical	3	117	junction_3	25.7001945517928	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTTGTGGAGTCTGTGGT	8036	False	NA	13	True	NA	NA	NA	35150341	35154297	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_35150524_35150891_35151085_35151541_35153162_35153258_35153482_35153580
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039860	chr17	+	3032	4	NIC	ENSMUSG00000007038.6	novel	3619	5	NA	NA	52	-600	intron_retention	FALSE	canonical	3	122	junction_1	26.5120517668642	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTTGTGGAGTCTGTGGT	8036	False	NA	13	True	NA	NA	NA	35150341	35154297	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_35150524_35150891_35151085_35151541_35153482_35153580
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039866	chr17	-	591	5	FSM	ENSMUSG00000092203.8	ENSMUST00000172501.8	579	5	-4	-8	-1	3	multi-exon	FALSE	canonical	3	94	junction_4	37.0497975702972	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTTTTTCTGTGTCACT	6006	False	NA	NA	False	AATAAA	-22	NA	35171448	35169210	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111_35171150_35171327
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039871	chr17	-	436	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173070.8	434	4	-1	-1	-1	1	multi-exon	FALSE	canonical	3	38	junction_1	32.4995726467629	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATAGACTTTTTCTGTG	6006	False	NA	NA	False	AATAAA	-17	NA	35171448	35169215	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_35169452_35170860_35170902_35171111_35171150_35171327
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039896	chr17	+	1135	4	FSM	ENSMUSG00000007050.18	ENSMUST00000174860.8	691	4	-50	-394	-2	0	multi-exon	FALSE	canonical	3	1479	junction_1	117.83132954449	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	233	False	NA	26	True	AATAAA	-20	NA	35201094	35204867	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_35201664_35204084_35204116_35204224_35204285_35204392
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039902	chr17	-	2901	3	Intergenic	novelGene_168	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	153.5	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTCTGTTTCTTTTATC	NA	False	NA	-17	True	NA	NA	NA	35219833	35215700	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_-_35218446_35219142_35219185_35219719
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039905	chr17	-	2933	2	Intergenic	novelGene_167	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	307	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTCTGTTTCTTTTATC	273	False	NA	-17	True	NA	NA	NA	35219330	35215700	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_-_35218446_35219142
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039914	chr17	-	621	2	Intergenic	novelGene_169	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGTTGGGGGAGAAAGGC	NA	False	NA	NA	False	AAAAAG	-16	NA	35219818	35218662	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_-_35219185_35219719
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039943	chr17	+	4039	30	NNC	ENSMUSG00000007029.17	novel	4137	30	NA	NA	38	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_11	486.158019064372	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCGCTCTTGTCTGTGTG	9576	False	NA	12	True	AATAAA	-13	NA	35220064	35235300	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_35220209_35220387_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230303_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000039972	chr17	+	3974	29	NNC	ENSMUSG00000007029.17	novel	4137	30	NA	NA	19	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	492.476502858103	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGCTCTTGTCTGTGTGGTG	5	True	NA	15	True	AATAAA	-16	NA	35220311	35235303	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231627_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040019	chr17	+	2022	20	NNC	ENSMUSG00000007036.16	novel	1945	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_14	38.9519200754254	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTGCTTATGAGATGT	NA	False	NA	32	True	AATAAA	-19	NA	35308238	35321963	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_35308433_35309344_35309402_35309997_35310065_35310546_35310634_35313226_35313313_35315279_35315354_35315457_35315581_35317669_35317785_35317874_35317977_35319310_35319375_35319614_35319665_35319937_35320062_35320217_35320323_35320517_35320582_35320754_35320861_35320945_35321009_35321121_35321199_35321273_35321373_35321450_35321498_35321645
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040027	chr17	+	2153	21	NNC	ENSMUSG00000007036.16	novel	1945	20	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	48.0332176727731	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTGCTTATGAGATGT	NA	False	NA	32	True	AATAAA	-19	NA	35308247	35321963	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_35308433_35309344_35309402_35309997_35310065_35310546_35310634_35310794_35310984_35313226_35313313_35315279_35315354_35315457_35315581_35317669_35317785_35317874_35317977_35319310_35319375_35319614_35319665_35319937_35320062_35320217_35320323_35320517_35320582_35320803_35320861_35320945_35321009_35321121_35321199_35321273_35321373_35321450_35321498_35321645
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040053	chr17	+	3827	25	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	186	junction_11	147.653539437202	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCGAGTACCTTTTCTTT	8515	False	NA	31	True	AATAAA	-32	NA	35354180	35366297	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040057	chr17	+	3935	26	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	434	junction_1	113.385261828864	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCGAGTACCTTTTCTTT	8515	False	NA	31	True	AATAAA	-32	NA	35354180	35366297	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040103	chr17	-	2867	16	NIC	ENSMUSG00000024393.15	novel	6888	31	NA	NA	-2621	0	combination_of_known_junctions	FALSE	canonical	3	143	junction_7	94.6922500642065	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGAAAGTCATGGGTGG	5410	False	NA	-1	True	AATAAA	-21	NA	35374856	35368051	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369879_35371593_35371762_35372027_35372100_35372200_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767_35374037_35374341
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040140	chr17	+	3340	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-11	3	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	713.572168739785	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	13	True	AATGAA	-2	NA	35460769	35472659	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35468549_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040142	chr17	+	1671	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-11	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	714.925093978383	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	13	True	AATGAA	-2	NA	35460769	35472659	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470359_35471722_35471833_35471939_35472085_35472182_35472331_35472448
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040162	chr17	-	186	1	Intergenic	novelGene_170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTCATATTAAAAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	35798639	35798453	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_-_35798500_35798600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040163	chr17	+	1498	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	-128	-8	-128	8	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	2342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTTCCTTCAGTTCC	2908	False	NA	8	True	AATAAA	-28	NA	35816786	35821677	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040182	chr17	+	2626	18	NNC	ENSMUSG00000040312.15	novel	2656	18	NA	NA	-78	1	at_least_one_novel_splicesite	TRUE	canonical	3	25	junction_1	28.0148255362583	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTGAGAGACTGCGAT	4354	False	NA	21	True	AATAAA	-23	NA	35827918	35841903	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_35828009_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040184	chr17	+	2692	18	NNC	ENSMUSG00000040312.15	novel	2656	18	NA	NA	-78	1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	32.5386116125864	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTGAGAGACTGCGAT	4354	False	NA	21	True	AATAAA	-23	NA	35827918	35841903	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_35828009_35829047_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040191	chr17	+	2720	18	FSM	ENSMUSG00000040312.15	ENSMUST00000164242.9	2656	18	-54	-10	-54	1	multi-exon	FALSE	canonical	3	44	junction_1	24.5503507751598	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTGAGAGACTGCGAT	4378	False	NA	21	True	AATAAA	-23	NA	35827942	35841903	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_35828127_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040224	chr17	-	1653	14	FSM	ENSMUSG00000001524.15	ENSMUST00000001565.15	1679	14	24	2	-12	-2	multi-exon	FALSE	canonical	3	142	junction_8	17.8418429806661	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACGCGGCTTCAGACGTC	NA	False	NA	-3	True	AATAAA	-15	NA	35984607	35978623	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984447
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040251	chr17	+	1125	2	FSM	ENSMUSG00000003541.7	ENSMUST00000003635.7	1131	2	0	6	0	-6	multi-exon	FALSE	canonical	3	7	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCAGTTCTCGAAGTGTA	NA	False	NA	10	True	AATAAA	-23	NA	36132575	36133809	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_36132821_36132929
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040262	chr17	-	2679	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	-26	-4	-26	4	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	7012	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGCTGTGTGCTCATTC	NA	False	NA	-3	True	AATAAA	-20	NA	36149224	36144808	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040295	chr17	+	3408	20	FSM	ENSMUSG00000024422.15	ENSMUST00000025292.15	3351	20	-57	0	-57	0	multi-exon	TRUE	canonical	3	278	junction_2	372.558080768229	393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTTATGTCATTGCTT	NA	False	NA	52	True	AATGAA	-42	NA	36190653	36203562	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_36191011_36192169_36192415_36192521_36192688_36192913_36192971_36193333_36193589_36193736_36193941_36194024_36194217_36194706_36194818_36194911_36195028_36196386_36196598_36196775_36196875_36196981_36197135_36198290_36198432_36198726_36198890_36198975_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040356	chr17	+	4245	20	NIC	ENSMUSG00000039220.17	novel	4222	19	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_1	16.24875874228	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGGTATGTTTCACTTC	NA	False	NA	28	True	AATAAA	-28	NA	36227874	36243175	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_36227898_36228089_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865_36237979_36238801_36238903_36239073_36239222_36239294_36239454_36239543_36239791_36240112_36240177_36240283_36240479_36240664_36240741_36240942_36241057_36241183_36241784_36242040
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040364	chr17	-	3184	23	FSM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	-19	-4	-19	4	multi-exon	FALSE	canonical	3	801	junction_12	70.1887066803097	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCCTGTGGGGTGCTTCCT	NA	False	NA	-8	True	AATAAA	-22	NA	36280672	36267706	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040378	chr17	-	2362	6	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	-14	2	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	36.7205664444327	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTCTCATTTCTCTGTT	NA	False	NA	1	True	AATAAA	-18	NA	36291142	36283430	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602_36289674_36290018_36290148_36290599
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040381	chr17	-	1932	4	FSM	ENSMUSG00000038500.16	ENSMUST00000172429.8	1878	4	-52	-2	-52	2	multi-exon	FALSE	canonical	3	103	junction_2	20.5101600838869	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTCTCATTTCTCTGTT	NA	False	NA	1	True	AATAAA	-18	NA	36289915	36283430	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040409	chr17	+	1066	2	FSM	ENSMUSG00000092368.2	ENSMUST00000173900.2	1111	2	51	-6	51	6	multi-exon	FALSE	canonical	3	20	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTCTATTAGTCCACAGT	NA	False	NA	NA	False	ATTAAA	-25	NA	36305395	36349333	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_36305453_36348324
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040415	chr17	-	934	5	FSM	ENSMUSG00000073406.11	ENSMUST00000195833.6	829	5	-26	-79	-26	5	multi-exon	FALSE	canonical	3	113	junction_4	176.893329438959	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTTTCCTGCATTGAGC	NA	False	NA	0	True	AATAAA	-27	NA	36395141	36391001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394825_36395051
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040417	chr17	-	1210	6	FSM	ENSMUSG00000073406.11	ENSMUST00000195838.6	1105	6	-26	-79	-26	5	multi-exon	FALSE	canonical	3	113	junction_5	180.752427369593	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTTTCCTGCATTGAGC	NA	False	NA	0	True	AATAAA	-27	NA	36395141	36391001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394825_36395051
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040455	chr17	-	3066	7	FSM	ENSMUSG00000045409.17	ENSMUST00000113706.10	3204	7	139	-1	-45	1	multi-exon	FALSE	canonical	3	42	junction_1	8.81286937760152	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGAGTTGCGTGGTAA	NA	False	NA	-7	True	NA	NA	NA	36582320	36569763	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_36571814_36572382_36572499_36573001_36573025_36574620_36574852_36578016_36578113_36579500_36579959_36582228
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040516	chr17	+	3705	3	FSM	ENSMUSG00000036036.16	ENSMUST00000174672.2	2597	3	-1128	20	13	-20	multi-exon	FALSE	canonical	3	2767	junction_1	286	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	16	True	AATAAA	-21	NA	37313429	37321504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_37315796_37316941_37317087_37320310
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040520	chr17	+	1674	5	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	-12	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1406.78256582174	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	16	True	AATAAA	-21	NA	37313433	37321504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_37313632_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040525	chr17	+	3193	4	NIC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	-12	-20	intron_retention	FALSE	canonical	3	426	junction_1	1260.20430442404	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	16	True	AATAAA	-21	NA	37313433	37321504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_37313670_37314177_37315796_37316941_37317087_37320310
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040605	chr17	+	2438	6	FSM	ENSMUSG00000023947.9	ENSMUST00000024742.9	2435	6	-3	0	-3	0	multi-exon	FALSE	canonical	3	12	junction_2	2.44948974278318	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGGTTATACGTTGCAA	NA	False	NA	NA	False	ATTAAA	-17	NA	45866625	45874095	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_45867241_45869420_45869524_45870133_45870357_45871049_45871139_45871333_45871574_45872927
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040613	chr17	+	2022	4	FSM	ENSMUSG00000037089.12	ENSMUST00000224905.2	1906	4	62	-178	-12	177	multi-exon	FALSE	canonical	3	396	junction_3	17.6823829464998	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATAACACCCAACCCTGC	NA	False	NA	NA	False	NA	NA	NA	45874861	45878774	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45877234
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040631	chr17	-	2526	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	2	intron_retention	TRUE	canonical	0	0	junction_8	3295.6876080721	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCTCTCCTTGTAACAC	NA	False	NA	-22	True	AATAAA	-21	NA	45884199	45878698	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882336_45882546_45882690_45882838_45884092
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040697	chr17	-	2119	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	12	1	combination_of_known_junctions	FALSE	canonical	3	1063	junction_5	395.007197897117	1063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGCATCCTTCCAAGG	NA	False	NA	0	True	AATAAA	-19	NA	45906516	45896124	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040699	chr17	-	2113	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	12	1	combination_of_known_junctions	FALSE	canonical	3	1453	junction_5	311.5369990469	1268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGCATCCTTCCAAGG	NA	False	NA	0	True	AATAAA	-19	NA	45906516	45896124	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040700	chr17	-	1998	13	FSM	ENSMUSG00000023942.16	ENSMUST00000051574.13	1996	13	2	-4	0	1	multi-exon	FALSE	canonical	3	154	junction_12	699.864927444337	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGCATCCTTCCAAGG	NA	False	NA	0	True	AATAAA	-19	NA	45906496	45896124	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040712	chr17	-	1991	13	FSM	ENSMUSG00000023942.16	ENSMUST00000064889.13	1988	13	0	-3	0	0	multi-exon	FALSE	canonical	3	154	junction_12	659.372555287727	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	-1	True	AATAAA	-18	NA	45906496	45896125	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040713	chr17	-	2149	14	NIC	ENSMUSG00000023942.16	novel	2033	13	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_13	645.50828557468	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	-1	True	AATAAA	-18	NA	45910544	45896125	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45910398
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040742	chr17	-	2227	13	NIC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	-1	0	intron_retention	FALSE	canonical	3	1453	junction_5	323.049746771126	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	-1	True	AATAAA	-18	NA	45906499	45896125	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040793	chr17	-	2032	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	44	junction_13	698.730844388172	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45906828	45896127	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906803
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040830	chr17	-	3278	24	FSM	ENSMUSG00000036026.16	ENSMUST00000113523.9	3284	24	6	0	6	0	multi-exon	FALSE	canonical	3	105	junction_20	27.310993375713	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGGTTGGCAGTCCCTC	NA	False	NA	-6	True	AATAAA	-20	NA	45997179	45971096	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_45971907_45972148_45972230_45972379_45972496_45972682_45972851_45973788_45973895_45974432_45974596_45975669_45975736_45975844_45975932_45976090_45976198_45976952_45977107_45977242_45977381_45977503_45977638_45978620_45978745_45980868_45980950_45984085_45984157_45984658_45984768_45984904_45984957_45985044_45985188_45986311_45986350_45988851_45988943_45989888_45989928_45990162_45990243_45990457_45990641_45997042
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040845	chr17	-	2816	24	NIC	ENSMUSG00000036026.16	novel	3284	24	NA	NA	-1	-548	combination_of_known_junctions	FALSE	canonical	3	7	junction_23	42.6672180178617	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCTAATAATTTATTAGAAC	NA	False	NA	NA	False	ACTAAA	-10	NA	45997064	45971644	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_45971907_45972148_45972230_45972379_45972496_45972682_45972851_45973788_45973895_45974432_45974596_45975669_45975736_45975844_45975932_45976090_45976198_45976952_45977107_45977242_45977381_45977503_45977638_45978620_45978745_45980868_45980950_45984085_45984157_45984658_45984768_45984904_45984957_45985044_45985188_45986311_45986350_45988851_45988943_45989888_45989928_45990162_45990243_45990457_45990641_45996841
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040860	chr17	-	2263	4	NIC	ENSMUSG00000023951.19	novel	3451	7	NA	NA	-5	1131	intron_retention	FALSE	canonical	3	442	junction_3	52.6687763290548	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGGCCACGTGCTAGC	NA	False	NA	NA	False	AAGAAA	-21	NA	46343300	46334990	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_46335021_46335369_46336470_46339276_46339326_46342216
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040876	chr17	-	1274	3	FSM	ENSMUSG00000034509.10	ENSMUST00000171172.3	1272	3	0	-2	0	2	multi-exon	FALSE	canonical	3	95	junction_1	3.5	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGATTTAGACTTTTGG	NA	False	NA	0	True	AATAAA	-23	NA	46464479	46458310	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_46459211_46463704_46463968_46464368
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040927	chr17	-	2519	11	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_7	117.719199793407	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5823	False	NA	-30	True	AATAAA	-18	NA	46593935	46568799	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575019_46575117_46575808_46575905_46593271_46593366_46593885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040928	chr17	-	2558	11	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	80	junction_7	97.6076328982524	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5817	False	NA	-30	True	AATAAA	-18	NA	46593941	46568799	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46582725_46582856_46593271_46593366_46593885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040976	chr17	+	1192	4	FSM	ENSMUSG00000040658.8	ENSMUST00000046497.8	1190	4	0	-2	0	2	multi-exon	FALSE	canonical	3	629	junction_2	31.4960314960472	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGGTCACGGTGTCTG	NA	False	NA	16	True	NA	NA	NA	46807636	46810552	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_46807899_46809350_46809420_46809568_46809680_46809802
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000040987	chr17	+	190	1	Intergenic	novelGene_171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAGAAAGAAAGAAGTGGA	NA	False	NA	NA	False	NA	NA	NA	46869874	46870064	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_46869900_46870100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041006	chr17	-	2318	16	FSM	ENSMUSG00000003546.11	ENSMUST00000233974.2	2313	16	-8	3	-8	-3	multi-exon	FALSE	canonical	3	47	junction_15	23.4960043884534	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTCGGAGTCTTCA	NA	False	NA	-5	True	AATAAA	-15	NA	46956956	46941552	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041029	chr17	+	1018	7	FSM	ENSMUSG00000002767.14	ENSMUST00000002844.14	1031	7	13	0	-1	0	multi-exon	FALSE	canonical	3	984	junction_4	70.4430423975443	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTACTACCTTTTCACT	NA	False	NA	28	True	AATAAA	-17	NA	46957167	46961058	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959960_46960035_46960809
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041094	chr17	-	2920	15	FSM	ENSMUSG00000059409.10	ENSMUST00000233988.2	3038	15	118	0	9	0	multi-exon	FALSE	canonical	3	79	junction_14	104.207504919908	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGAGTCGCCTTGGTGT	1118	False	NA	NA	False	AATAAA	-15	NA	47015919	46993916	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011076_47015758
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041101	chr17	+	3223	17	FSM	ENSMUSG00000002763.17	ENSMUST00000002840.9	3200	17	-22	-1	-22	1	multi-exon	TRUE	canonical	3	74	junction_1	12.2574913318346	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCTTGTGAGAGGTTGCG	NA	False	NA	12	True	AATAAA	-19	NA	47022366	47036468	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_47023311_47024833_47024998_47025386_47025471_47031253_47031357_47031437_47031572_47032108_47032221_47032595_47032805_47033169_47033366_47033547_47033625_47034037_47034171_47034249_47034456_47034599_47034662_47034844_47034954_47035316_47035434_47035552_47035631_47035750_47035891_47036113
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041116	chr17	-	1875	6	FSM	ENSMUSG00000023973.14	ENSMUST00000059844.13	1908	6	-16	49	-16	2	multi-exon	FALSE	canonical	3	416	junction_4	48.1730214954387	233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTACTGCTATGAATT	NA	False	NA	-16	True	NA	NA	NA	47063156	47046679	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47054111_47054209_47058346_47058471_47062898
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041127	chr17	+	608	1	FSM	ENSMUSG00000062619.7	ENSMUST00000071430.7	762	1	161	-7	161	7	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCAGTCGTTTGGGTTT	NA	False	NA	17	True	GATAAA	-25	NA	47083721	47084329	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_47083700_47084300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041133	chr17	-	2630	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	-17	-7	-1	7	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGTTCGCCCAGTCCCCTG	NA	False	NA	NA	False	NA	NA	NA	47093599	47084825	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041137	chr17	-	2041	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	0	-590	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	847.611873966433	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCGTGTGAGTACATGC	NA	False	NA	-2	True	AGTAAA	-17	NA	47093598	47085422	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_47086663_47088968_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041174	chr17	+	1102	6	NIC	ENSMUSG00000034729.17	novel	1017	7	NA	NA	0	1	intron_retention	FALSE	canonical	3	1493	junction_5	178.399103136759	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTGGTTTTGTTTAC	7137	False	NA	6	True	NA	NA	NA	47679811	47689605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_47679880_47683351_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041196	chr17	-	524	3	ISM	ENSMUSG00000023982.9	ENSMUST00000059348.9	873	4	4870	0	4870	0	3prime_fragment	FALSE	canonical	3	65	junction_1	4	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAGTCTCAGCTTTTTT	6706	False	NA	0	True	NA	NA	NA	47706639	47705482	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_-_47705746_47706032_47706127_47706472
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041217	chr17	-	2794	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233121.2	2793	8	0	-1	0	1	multi-exon	FALSE	canonical	3	89	junction_1	41.4984632122636	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATAGGGCCTCTCAAATG	NA	False	NA	-3	True	AATAAA	-32	NA	47813212	47799205	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041223	chr17	-	3017	8	NNC	ENSMUSG00000023980.8	novel	2793	8	NA	NA	0	-15	intron_retention	FALSE	canonical	3	5	junction_1	69.953920693612	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGTAAATGACTCAGACA	NA	False	NA	-19	True	AATAAA	-16	NA	47813212	47799221	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_47801447_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041235	chr17	+	2037	5	FSM	ENSMUSG00000034165.17	ENSMUST00000182209.8	1977	5	-59	-1	-25	1	multi-exon	FALSE	canonical	3	3602	junction_2	267.432701814868	3021	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTCTTGTGATCCCTGG	NA	False	NA	NA	False	AATAAA	-16	NA	47904335	47910615	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041242	chr17	+	1939	6	NNC	ENSMUSG00000034165.17	novel	1977	5	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1574.47598901984	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47904373	47910614	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_47904428_47904486_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041247	chr17	+	1960	5	NNC	ENSMUSG00000034165.17	novel	1977	5	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1738.9104347263	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47904415	47910614	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_47904778_47905658_47905879_47908344_47908505_47908927_47909065_47909533
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041260	chr17	+	1512	4	NIC	ENSMUSG00000034165.17	novel	336	3	NA	NA	-61	0	combination_of_known_junctions	FALSE	canonical	3	139	junction_1	1894.33911078948	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47908027	47910614	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_47908162_47908344_47908505_47908927_47909065_47909533
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041302	chr17	+	1409	9	FSM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	-20	-1	-20	1	multi-exon	FALSE	canonical	3	26	junction_3	162.479181358721	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	17	True	AATAAA	-17	NA	48037746	48045408	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_48037890_48039666_48039827_48040176_48040295_48041018_48041138_48041523_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041333	chr17	+	2361	9	NIC	ENSMUSG00000023990.19	novel	2296	8	NA	NA	760	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	141.519378090069	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTCCTGGCTCTGCGGT	NA	False	NA	18	True	AGTAAA	-18	NA	48050587	48103344	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_48050894_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041341	chr17	-	176	1	Intergenic	novelGene_172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGATAATCTTTTTTTAAAA	NA	False	NA	-13	True	NA	NA	NA	48115913	48115737	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_-_48115700_48115900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041354	chr17	-	3199	17	FSM	ENSMUSG00000023991.17	ENSMUST00000113265.8	3999	17	169	631	0	0	multi-exon	TRUE	canonical	3	59	junction_11	26.5099480148491	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTGTTGGCTTTTTCTT	NA	False	NA	-3	True	NA	NA	NA	48235401	48178688	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186614_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189420_48189531_48189680_48191187_48191275_48191694_48191818_48199049_48199146_48215220_48215460_48235130
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041364	chr17	+	194	1	Intergenic	novelGene_173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCACCTCACCCATACAGC	NA	False	NA	NA	False	NA	NA	NA	48222901	48223095	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_48222900_48223100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041374	chr17	-	3619	10	FSM	ENSMUSG00000023994.14	ENSMUST00000160319.8	1407	10	-20	-2192	0	0	multi-exon	TRUE	canonical	3	12	junction_8	15.1053910742547	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTGGATTTTTGGTGTT	NA	False	NA	-8	True	AATAAA	-22	NA	48716778	48693916	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706097_48707465_48707609_48716653
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041399	chr17	+	1176	6	NNC	ENSMUSG00000040771.15	novel	1135	6	NA	NA	31	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	404.287818268124	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAACGTCTGTGTTCTGG	NA	False	NA	24	True	AATAAA	-32	NA	48717072	48724297	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_48717266_48717852_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041409	chr17	-	1232	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	189	-1	-123	1	multi-exon	FALSE	canonical	3	57	junction_2	11.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGGCCTGTTCTCTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	48739769	48726257	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_48726662_48729968_48730534_48739506
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041436	chr17	-	2944	11	FSM	ENSMUSG00000010592.10	ENSMUST00000010736.9	2976	11	35	-3	-2	1	multi-exon	FALSE	canonical	3	352	junction_4	74.6324996231534	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGACTTACTGTCCTGT	NA	False	NA	-2	True	AATAAA	-19	NA	50600629	50586421	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_50588340_50590155_50590255_50591265_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041444	chr17	+	3645	6	FSM	ENSMUSG00000038910.8	ENSMUST00000043938.8	4185	6	135	405	135	-405	multi-exon	FALSE	canonical	3	70	junction_1	9.88736567544662	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGGCCCAAACATGCTG	NA	False	NA	NA	False	AATAAA	-20	NA	50816565	50995107	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_50816966_50913322_50915810_50918019_50918224_50947143_50947220_50975026_50975137_50994739
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041454	chr17	+	2395	6	FSM	ENSMUSG00000017831.9	ENSMUST00000017975.7	2366	6	-27	-2	-27	2	multi-exon	FALSE	canonical	3	761	junction_1	72.5131712173726	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGTTTTCTCTGTCTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	53786234	53814710	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_53786637_53790848_53791104_53804554_53804707_53805415_53805539_53807403_53807498_53813341
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041467	chr17	+	200	1	Intergenic	novelGene_174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACACTTAGTGACCTGTCA	NA	False	NA	NA	False	NA	NA	NA	53818527	53818727	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_53818500_53818700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041471	chr17	+	4366	18	FSM	ENSMUSG00000000708.15	ENSMUST00000000724.15	4653	18	287	0	287	0	multi-exon	FALSE	canonical	3	180	junction_6	30.0116471047111	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGTGTTATGTTTTAT	NA	False	NA	19	True	AATATA	-45	NA	53874285	53979748	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_53874607_53917891_53918019_53931379_53931526_53936351_53936445_53939564_53939747_53945379_53945572_53948220_53948328_53951641_53951765_53955774_53955912_53960049_53960259_53961466_53961594_53966345_53966457_53967056_53967201_53970562_53970678_53972433_53972471_53972680_53972745_53972850_53972936_53977702
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041515	chr17	-	2133	9	NIC	ENSMUSG00000003200.11	novel	2073	10	NA	NA	18	1	intron_retention	FALSE	canonical	3	585	junction_1	56.6192050014834	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGTCCCATCTTCATTC	NA	False	NA	0	True	ATTAAA	-18	NA	56343617	56323748	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041540	chr17	+	3448	14	FSM	ENSMUSG00000002835.10	ENSMUST00000002914.10	5535	14	-154	2241	-154	-797	multi-exon	TRUE	canonical	3	392	junction_3	50.5723455079702	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTGTCTCAACTATCAT	NA	False	NA	29	True	TATAAA	-23	NA	56347284	56375035	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_56347552_56351061_56351113_56353822_56354635_56363420_56363478_56364717_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041555	chr17	+	2310	16	FSM	ENSMUSG00000002833.12	ENSMUST00000226053.2	2270	16	-27	-13	-27	-2	multi-exon	FALSE	canonical	3	507	junction_6	104.875926694356	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTTTATTGGCTTAGGT	NA	False	NA	NA	False	TATAAA	-23	NA	56386606	56407605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041566	chr17	+	2280	16	NIC	ENSMUSG00000002833.12	novel	2270	16	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	309	junction_15	154.811225547618	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTTTATTGGCTTAGGT	NA	False	NA	NA	False	TATAAA	-23	NA	56386633	56407605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407347
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041570	chr17	+	2308	16	FSM	ENSMUSG00000002833.12	ENSMUST00000225843.2	2238	16	-63	-7	2	-2	multi-exon	FALSE	canonical	3	148	junction_6	179.285421108974	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTTTATTGGCTTAGGT	NA	False	NA	NA	False	TATAAA	-23	NA	56386635	56407605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041580	chr17	+	2254	16	FSM	ENSMUSG00000002833.12	ENSMUST00000002911.10	2264	16	19	-9	19	-2	multi-exon	FALSE	canonical	3	66	junction_6	225.638196136105	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTTTATTGGCTTAGGT	NA	False	NA	NA	False	TATAAA	-23	NA	56386656	56407605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403850_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407347
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041582	chr17	+	2257	16	NIC	ENSMUSG00000002833.12	novel	2264	16	NA	NA	19	-2	combination_of_known_junctions	FALSE	canonical	3	66	junction_6	198.047873000444	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTTTATTGGCTTAGGT	NA	False	NA	NA	False	TATAAA	-23	NA	56386656	56407605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403850_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041593	chr17	+	2280	16	NIC	ENSMUSG00000002833.12	novel	2264	16	NA	NA	23	-2	combination_of_known_junctions	FALSE	canonical	3	148	junction_6	209.929787204092	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTTTATTGGCTTAGGT	NA	False	NA	NA	False	TATAAA	-23	NA	56386660	56407605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407347
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041596	chr17	+	2258	16	NNC	ENSMUSG00000002833.12	novel	2270	16	NA	NA	23	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	221.343674457216	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTTTATTGGCTTAGGT	NA	False	NA	NA	False	TATAAA	-23	NA	56386660	56407605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404529_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041600	chr17	+	2827	15	NIC	ENSMUSG00000002833.12	novel	2270	16	NA	NA	23	-2	intron_retention	FALSE	canonical	3	635	junction_14	77.6569181642918	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTTTATTGGCTTAGGT	NA	False	NA	NA	False	TATAAA	-23	NA	56386660	56407605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041607	chr17	+	2363	16	NIC	ENSMUSG00000002833.12	novel	3354	12	NA	NA	20	-2	combination_of_known_junctions	FALSE	canonical	3	60	junction_1	208.4942205434	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTTTATTGGCTTAGGT	NA	False	NA	NA	False	TATAAA	-23	NA	56388443	56407605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_56388717_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041609	chr17	+	2360	16	NIC	ENSMUSG00000002833.12	novel	3354	12	NA	NA	20	-2	combination_of_known_junctions	FALSE	canonical	3	60	junction_1	233.26347525682	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTTTATTGGCTTAGGT	NA	False	NA	NA	False	TATAAA	-23	NA	56388443	56407605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_56388717_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407347
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041611	chr17	+	2390	16	NIC	ENSMUSG00000002833.12	novel	3354	12	NA	NA	20	-2	combination_of_known_junctions	FALSE	canonical	3	60	junction_1	249.767002535474	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTTTATTGGCTTAGGT	NA	False	NA	NA	False	TATAAA	-23	NA	56388443	56407605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_56388717_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041638	chr17	+	3315	1	FSM	ENSMUSG00000043683.5	ENSMUST00000060253.5	6801	1	0	3486	0	-3486	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGCCTAGCTGTTATTT	NA	False	NA	8	True	ATTAAA	-18	NA	56563809	56567124	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_56563800_56567100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041648	chr17	-	2158	8	NNC	ENSMUSG00000024197.11	novel	3645	8	NA	NA	0	-1484	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_1	203.915148419881	31	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGATGGTGTATATGTGTG	NA	False	NA	-3	True	AATAAA	-23	NA	56597511	56585959	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_56587071_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041652	chr17	-	2222	7	ISM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	2516	1484	2516	-1484	3prime_fragment	TRUE	canonical	3	572	junction_5	31.4536696322279	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGATGGTGTATATGTGTG	NA	False	NA	-3	True	AATAAA	-23	NA	56594995	56585959	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041653	chr17	-	2165	8	NNC	ENSMUSG00000024197.11	novel	3645	8	NA	NA	0	-1484	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	219.460191174172	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGATGGTGTATATGTGTG	NA	False	NA	-3	True	AATAAA	-23	NA	56597511	56585959	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593208_56593296_56593447_56593647_56594793_56594877_56597453
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041678	chr17	+	3595	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	-8	-1	-8	1	multi-exon	TRUE	canonical	3	1413	junction_6	319.856779473251	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGCGCACGTCTTTAAT	412	False	NA	37	True	AATAAA	-21	NA	56610312	56630487	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041684	chr17	+	3551	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113038.8	3483	17	-67	-1	12	1	multi-exon	FALSE	canonical	3	348	junction_6	505.023262923353	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGCGCACGTCTTTAAT	432	False	NA	37	True	AATAAA	-21	NA	56610332	56630487	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041694	chr17	+	3533	17	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	3	268	junction_4	655.998856706321	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	440	False	NA	36	True	AATAAA	-20	NA	56610340	56630486	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617828_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041735	chr17	+	3470	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	-79	0	-44	0	multi-exon	FALSE	canonical	3	638	junction_1	450.210766613816	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1368	False	NA	36	True	AATAAA	-20	NA	56611268	56630486	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041743	chr17	+	3373	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113035.8	3402	17	29	0	-6	0	multi-exon	FALSE	canonical	3	348	junction_6	590.514232338011	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1441	False	NA	36	True	AATAAA	-20	NA	56611341	56630486	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041745	chr17	+	3401	17	NNC	ENSMUSG00000001228.15	novel	3391	17	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	657.932293130342	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1441	False	NA	36	True	AATAAA	-20	NA	56611341	56630486	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624115_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041771	chr17	+	1998	9	ISM	ENSMUSG00000024201.13	ENSMUST00000025036.11	4577	23	-10	15892	2	853	5prime_fragment	FALSE	canonical	3	116	junction_1	20.6321957144653	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTCGGGTGTCTGCCTGT	4899	False	NA	NA	False	NA	NA	NA	56633063	56693972	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_+_56633230_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041799	chr17	+	3258	21	FSM	ENSMUSG00000071054.13	ENSMUST00000095224.11	3106	21	-152	0	-67	0	multi-exon	TRUE	canonical	3	422	junction_6	66.4862955803675	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTCAACCTCTC	7910	False	NA	35	True	AATAAA	-26	NA	56891906	56913294	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041804	chr17	+	3191	21	FSM	ENSMUSG00000071054.13	ENSMUST00000182533.8	3122	21	6	-75	-2	0	multi-exon	FALSE	canonical	3	97	junction_18	119.307543768196	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTCAACCTCTC	7983	False	NA	35	True	AATAAA	-26	NA	56891979	56913294	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912550_56912658_56912796_56912864_56912975
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041806	chr17	+	3040	22	NIC	ENSMUSG00000071054.13	novel	3106	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	80	junction_1	120.113627231518	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTCAACCTCTC	7985	False	NA	35	True	AATAAA	-26	NA	56891981	56913294	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_56892044_56892186_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041829	chr17	+	413	4	NNC	ENSMUSG00000057863.7	novel	383	4	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	5016.45339524516	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	2	True	AATAAA	-15	NA	56920415	56921246	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_56920449_56920558_56920681_56920906_56921042_56921123
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041831	chr17	+	612	3	NIC	ENSMUSG00000057863.7	novel	383	4	NA	NA	0	3	intron_retention	FALSE	canonical	3	5436	junction_1	2267	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	2	True	AATAAA	-15	NA	56920415	56921246	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_56920449_56920585_56921042_56921123
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041848	chr17	-	2947	18	NNC	ENSMUSG00000041168.11	novel	2951	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	193.582792566526	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTAAGCCTGAGTCTCAG	1571	False	NA	-12	True	AATAAA	-17	NA	56933887	56921296	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_56921564_56921635_56921801_56921873_56922092_56922249_56922416_56922503_56922645_56922925_56923043_56923129_56923253_56923358_56923447_56924753_56924933_56925317_56925457_56926171_56926389_56926985_56927070_56927222_56927353_56927513_56927576_56928923_56929159_56929433_56929554_56930136_56930226_56933480
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041851	chr17	-	2955	18	NNC	ENSMUSG00000041168.11	novel	2951	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	192.61636935615	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTAAGCCTGAGTCTCAG	1571	False	NA	-12	True	AATAAA	-17	NA	56933887	56921296	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_-_56921564_56921631_56921801_56921873_56922092_56922249_56922416_56922503_56922645_56922925_56923043_56923129_56923253_56923358_56923447_56924753_56924933_56925317_56925457_56926171_56926393_56926985_56927070_56927222_56927353_56927513_56927576_56928923_56929159_56929433_56929554_56930136_56930226_56933480
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041870	chr17	+	2506	16	FSM	ENSMUSG00000002372.10	ENSMUST00000002445.10	2373	16	-133	0	-69	0	multi-exon	FALSE	canonical	3	371	junction_2	28.8962896503263	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980224	57018764	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041878	chr17	+	2357	15	NIC	ENSMUSG00000002372.10	novel	2373	16	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_5	98.1330833145292	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980280	57018764	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041882	chr17	+	2984	15	NIC	ENSMUSG00000002372.10	novel	2373	16	NA	NA	1	0	intron_retention	FALSE	canonical	3	371	junction_2	28.0978610559304	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980358	57018764	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041896	chr17	+	2362	16	NNC	ENSMUSG00000002372.10	novel	2373	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	107.641916659925	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980380	57018764	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012583_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041927	chr17	+	2342	13	FSM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	-62	-255	-41	3	multi-exon	TRUE	canonical	3	220	junction_6	33.8230690505755	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTCTCCTTGTGATTT	9182	False	NA	15	True	NA	NA	NA	57071715	57077096	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041956	chr17	-	3374	17	FSM	ENSMUSG00000024206.16	ENSMUST00000086801.7	3283	17	-91	0	-91	0	multi-exon	TRUE	canonical	3	178	junction_12	29.2883695986991	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTGTCCGTGTTTGTTC	NA	False	NA	-1	True	NA	NA	NA	57138104	57082896	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57110477_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041978	chr17	+	2298	12	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	1754	-2	1728	2	3prime_fragment	TRUE	canonical	3	15	junction_6	15.5260378474249	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTCGCACCCCGAGGTAA	NA	False	NA	18	True	ATTAAA	-18	NA	57184230	57195906	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440_57193688_57195636
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000041991	chr17	+	1303	6	FSM	ENSMUSG00000002660.9	ENSMUST00000002735.9	983	6	-312	-8	-312	8	multi-exon	FALSE	canonical	3	1307	junction_4	119.017645750536	935	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTCCATTACTTCTCC	NA	False	NA	41	True	ATTAAA	-29	NA	57296992	57303196	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_57297514_57297605_57297678_57298293_57298391_57299825_57300014_57300447_57300554_57302877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042007	chr17	-	1831	13	FSM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	-110	-4	-110	4	multi-exon	FALSE	canonical	3	510	junction_7	59.552672763977	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGCGAGTCATCACTGC	NA	False	NA	-2	True	AATAAA	-17	NA	57318398	57310400	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042033	chr17	+	1393	3	FSM	ENSMUSG00000044279.16	ENSMUST00000163763.2	868	3	-34	-491	-18	0	multi-exon	FALSE	canonical	3	202	junction_2	10.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTAGCTGTAAGCTCTT	1560	False	NA	NA	False	AATAAA	-31	NA	57369264	57372918	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_57369767_57370636_57370699_57372089
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042045	chr17	-	2112	17	FSM	ENSMUSG00000005823.10	ENSMUST00000005975.8	2064	17	10	-58	-7	30	multi-exon	FALSE	canonical	3	88	junction_12	32.0784560686764	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCGGAGCCCTGTGCT	NA	False	NA	-1	True	AAAAAG	-41	NA	57554679	57541913	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550114_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042048	chr17	-	2133	17	FSM	ENSMUSG00000005823.10	ENSMUST00000233568.2	2405	17	-7	279	-7	30	multi-exon	FALSE	canonical	3	119	junction_12	26.3293443708726	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCGGAGCCCTGTGCT	NA	False	NA	-1	True	AAAAAG	-41	NA	57554679	57541913	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550135_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042060	chr17	+	2044	14	FSM	ENSMUSG00000019487.12	ENSMUST00000019631.11	2224	14	-58	238	-31	0	multi-exon	FALSE	canonical	3	302	junction_12	30.2353686068634	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTGGAGTCTGCACCGC	NA	False	NA	13	True	ATTAAA	-23	NA	57556423	57570427	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569356_57569473_57569999
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042072	chr17	+	200	1	Intergenic	novelGene_175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGACCTACTCCCCCATGT	NA	False	NA	NA	False	NA	NA	NA	57584819	57585019	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_57584800_57585000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042089	chr17	+	2759	19	NIC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	71	junction_10	30.9070689904469	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGTATTAGCTAACCACAG	NA	False	NA	4	True	AATAAA	-15	NA	64170999	64446192	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288477_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042095	chr17	-	2857	10	FSM	ENSMUSG00000024083.17	ENSMUST00000172818.8	4740	10	30	1853	1	-1838	multi-exon	FALSE	canonical	3	104	junction_6	24	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATCTTGGATGTAAACCT	NA	False	NA	NA	False	ACTAAA	-44	NA	64638881	64589852	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64604718_64604905_64615616_64616662_64618165_64618367_64619995_64620114_64638790
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042098	chr17	-	2656	9	FSM	ENSMUSG00000024083.17	ENSMUST00000172733.2	4488	9	-6	1838	-6	-1838	multi-exon	FALSE	canonical	3	36	junction_5	42.6614580154031	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATCTTGGATGTAAACCT	NA	False	NA	NA	False	ACTAAA	-44	NA	64638866	64589852	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64615616_64616662_64618165_64618367_64619995_64620114_64638790
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042116	chr17	-	3363	7	FSM	ENSMUSG00000056515.10	ENSMUST00000070673.9	3473	7	110	0	-2	0	multi-exon	TRUE	canonical	3	62	junction_1	10.1775897605147	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGTCCTTTCCTCATT	NA	False	NA	0	True	AATAAA	-15	NA	66079637	65958723	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_65961499_65974860_65974971_66003265_66003373_66004985_66005058_66024476_66024559_66029002_66029083_66079500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042226	chr17	+	191	1	Intergenic	novelGene_176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCATGGTGAACAGCATATT	3048	False	NA	NA	False	NA	NA	NA	71093419	71093610	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_71093400_71093600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042253	chr17	+	511	1	FSM	ENSMUSG00000100865.3	ENSMUST00000184151.3	473	1	-12	-26	-12	26	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCTAGCATGGAATAATT	230	False	NA	NA	False	AATAAA	-41	NA	71182822	71183333	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_71182800_71183300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042269	chr17	-	2507	17	ISM	ENSMUSG00000024054.15	ENSMUST00000127430.2	7052	48	-151	81749	-151	22344	5prime_fragment	FALSE	canonical	3	108	junction_11	13.8293166859393	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGGGAAGCAATGCAGAAAC	NA	False	NA	NA	False	NA	NA	NA	71782489	71733232	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_-_71733264_71733434_71733518_71734431_71734539_71735166_71735281_71736456_71736652_71738216_71738401_71743700_71743822_71747898_71748110_71748870_71748962_71750876_71751044_71755507_71755628_71755726_71755842_71762599_71762731_71763412_71763496_71770756_71770919_71772588_71772665_71781973
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042277	chr17	-	2186	17	FSM	ENSMUSG00000024056.11	ENSMUST00000024851.10	2201	17	16	-1	16	1	multi-exon	TRUE	canonical	3	248	junction_10	48.8427003246135	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCCCCTCCCATTTCTGT	NA	False	NA	-10	True	AATAAA	-20	NA	71833836	71803093	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_71803349_71806261_71806365_71807266_71807398_71808503_71808597_71811760_71811851_71814254_71814408_71815562_71815769_71818339_71818485_71819387_71819495_71821183_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830576_71830655_71832627_71832738_71833705
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042306	chr17	+	2164	3	NNC	ENSMUSG00000039770.7	novel	3120	3	NA	NA	205	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	122	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAACTGCTACTTATTTTC	950	False	NA	15	True	AATAAA	-24	NA	73143652	73157439	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_73143787_73153273_73153443_73155578
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042326	chr17	+	211	1	Intergenic	novelGene_177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGCCTTGTTTTGTCCCT	NA	False	NA	NA	False	AATAAA	-1	NA	74447812	74448023	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_74447800_74448000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042330	chr17	+	215	1	Antisense	novelGene_ENSMUSG00000117113.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGAATGGGTGTGAGGGG	7665	False	NA	NA	False	NA	NA	NA	74497290	74497505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr17_+_74497300_74497500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042360	chr17	+	862	1	Intergenic	novelGene_178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCTCACTGGAGAGATGTA	NA	False	NA	NA	False	AATAAA	-43	NA	74794221	74795083	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_74794200_74795100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042391	chr17	+	2711	21	NNC	ENSMUSG00000024078.8	novel	2838	20	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	36.5724964966845	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTGTGATGTTCTCA	NA	False	NA	10	True	AATAAA	-21	NA	75024754	75170565	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_75024784_75024882_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170328
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042397	chr17	+	228	1	Intergenic	novelGene_179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTATTGTTGCCAGGCGGTG	NA	False	NA	NA	False	AAAAAG	-24	NA	75268936	75269164	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_75268900_75269200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042443	chr17	-	3349	16	FSM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	-19	740	-19	99	multi-exon	FALSE	canonical	3	465	junction_13	57.736720454914	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGTCATTTATAAAATT	NA	False	NA	-38	True	AATAAA	-14	NA	79244514	79227174	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042478	chr17	-	3549	13	FSM	ENSMUSG00000059811.14	ENSMUST00000068282.7	3618	13	67	2	-5	0	multi-exon	TRUE	canonical	3	301	junction_5	41.6619997386374	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCAAGTGTTCTGAAATTA	3818	False	NA	-4	True	AATAAA	-16	NA	80203485	80155820	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042488	chr17	+	2337	7	FSM	ENSMUSG00000035473.11	ENSMUST00000039205.11	2314	7	-20	-3	-20	3	multi-exon	FALSE	canonical	3	126	junction_3	8.09149072929224	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTCTTGTTCTTTTGTGT	NA	False	NA	14	True	AATAAA	-22	NA	80434879	80492533	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457600_80488989_80489132_80490620_80490796_80491412
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042496	chr17	-	2285	8	FSM	ENSMUSG00000024097.12	ENSMUST00000235069.2	1040	8	-2	-1243	0	6	multi-exon	FALSE	canonical	3	1059	junction_3	412.241508371597	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCAGTCTTTGGAAGTAT	NA	False	NA	-5	True	AATAAA	-29	NA	80514734	80507502	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042506	chr17	-	2288	8	FSM	ENSMUSG00000024097.12	ENSMUST00000063417.11	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_3	505.274425335341	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	-11	True	AATAAA	-23	NA	80514734	80507508	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042521	chr17	-	1932	7	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	759	junction_3	536.547735268934	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80512868_80513276_80513458_80514603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042523	chr17	-	1022	7	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	135	junction_1	822.802257869748	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_-_80509032_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042534	chr17	-	1922	7	FSM	ENSMUSG00000024097.12	ENSMUST00000235036.2	1921	7	0	-1	0	-1	multi-exon	FALSE	canonical	3	1059	junction_3	429.146601472685	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTTGATTTTTGTGTTC	NA	False	NA	-8	True	AATAAA	-15	NA	80514734	80508739	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80512868_80513276_80513458_80514603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042553	chr17	-	2372	2	ISM	ENSMUSG00000024097.12	ENSMUST00000235069.2	1040	8	0	3206	0	-496	intron_retention	FALSE	canonical	3	2057	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATAGGCCCAGAGTTTT	NA	False	NA	NA	False	AGTAAA	-10	NA	80514732	80511951	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_-_80512868_80513276
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042577	chr17	-	1865	10	FSM	ENSMUSG00000024246.10	ENSMUST00000025093.6	1833	10	-27	-5	-12	5	multi-exon	FALSE	canonical	3	99	junction_3	16.3940669785982	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTATAGACTCTTGTG	8137	False	NA	NA	False	ATTAAA	-27	NA	81372523	81333755	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_81334400_81340060_81340170_81344926_81345042_81345533_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042588	chr17	-	1001	1	FSM	ENSMUSG00000117438.2	ENSMUST00000234808.2	885	1	-78	-38	-78	38	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAGGAAAATAAAGTTGC	NA	False	NA	NA	False	NA	NA	NA	82718326	82717325	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_82717300_82718300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042636	chr17	+	210	1	Intergenic	novelGene_180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCCAGCATGTGGGCTC	9527	False	NA	NA	False	NA	NA	NA	84521761	84521971	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr17_+_84521800_84522000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042644	chr17	-	4418	38	FSM	ENSMUSG00000024120.13	ENSMUST00000112308.9	4393	38	-25	0	-21	0	multi-exon	FALSE	canonical	3	476	junction_25	55.1799102769645	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTATGTATTTTTTTAT	NA	False	NA	-6	True	AATAAA	-16	NA	85098011	85012674	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_85012901_85013326_85013470_85014521_85014607_85015515_85015591_85017718_85017835_85017962_85018103_85020120_85020323_85024054_85024144_85030124_85030252_85033730_85033840_85033957_85034101_85038572_85038664_85039176_85039246_85047497_85047605_85047971_85048097_85056388_85056597_85057935_85058022_85058651_85058783_85059736_85059851_85060156_85060202_85060541_85060620_85060832_85060940_85061968_85062027_85063685_85063714_85069379_85069447_85071879_85071974_85074420_85074540_85077022_85077131_85077427_85077534_85077781_85077928_85078270_85078416_85078851_85078979_85079520_85079608_85080471_85080531_85080635_85080758_85082816_85082940_85084368_85084563_85097792
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042670	chr17	-	2779	15	FSM	ENSMUSG00000024127.16	ENSMUST00000171795.9	2734	15	-43	-2	-26	1	multi-exon	FALSE	canonical	3	148	junction_9	21.6455679584736	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTGTGTAATTTTGCT	NA	False	NA	-1	True	TTTAAA	-6	NA	85397695	85371955	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042676	chr17	-	2212	14	FSM	ENSMUSG00000024127.16	ENSMUST00000072406.5	3255	14	-16	1059	4	0	multi-exon	FALSE	canonical	3	23	junction_13	48.4489605166915	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTTTGTGTAATTTTGC	NA	False	NA	-2	True	TTTAAA	-5	NA	85397665	85371956	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85397533
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042680	chr17	+	1046	8	ISM	ENSMUSG00000071037.7	ENSMUST00000095188.7	1595	11	301021	-1	299490	1	3prime_fragment	TRUE	canonical	3	62	junction_3	5.28764443523479	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTGTTTCAATCTATCG	7751	False	NA	11	True	AATAAA	-27	NA	85699000	85766017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr17_+_85699062_85700885_85700941_85702029_85702094_85709853_85709921_85738898_85738974_85746954_85747019_85759623_85759756_85765489
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042718	chr17	-	1102	5	FSM	ENSMUSG00000036438.15	ENSMUST00000234406.2	842	5	-7	-253	-7	0	multi-exon	FALSE	canonical	3	65	junction_4	3004.56365384393	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGCTCTGAATCTGAGT	NA	False	NA	-5	True	AATAAA	-21	NA	87754291	87740839	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87754220
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042727	chr17	+	1774	9	FSM	ENSMUSG00000045394.10	ENSMUST00000234623.2	1745	9	-25	-4	-25	4	multi-exon	FALSE	canonical	3	196	junction_4	21.0535032714273	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGGTAAGTCTTGTGTTA	NA	False	NA	NA	False	AAGAAA	-1	NA	87944084	87958561	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_87944323_87947323_87947432_87947715_87947957_87948861_87948928_87949529_87949594_87950969_87951072_87953564_87953769_87957041_87957087_87957855
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042731	chr17	+	3130	16	FSM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	160	-7	-50	7	multi-exon	FALSE	canonical	3	1624	junction_8	132.693531618287	684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTACCTTGTATTTCTTTTC	4821	False	NA	26	True	AATAAA	-23	NA	87979917	88031148	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042752	chr17	+	1785	2	FSM	ENSMUSG00000024151.14	ENSMUST00000174240.2	1752	2	-8	-25	-8	25	multi-exon	FALSE	canonical	3	1709	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAATTAATTGGATAATT	4863	False	NA	NA	False	AATAGA	-45	NA	87979959	87987145	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_87980235_87985635
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042799	chr17	-	1849	1	FSM	ENSMUSG00000066878.6	ENSMUST00000086423.6	1988	1	7	132	7	-132	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATACTTGAACAGTTATAA	NA	False	NA	NA	False	AAGAAA	-1	NA	90217870	90216021	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_-_90216000_90217900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042803	chr17	+	1365	1	FSM	ENSMUSG00000043346.10	ENSMUST00000057074.10	747	1	-37	-581	-37	581	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAGCCATCACCAAGTAC	NA	False	NA	NA	False	ATTAAA	-44	NA	91544201	91545566	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_91544200_91545600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042804	chr17	+	420	1	FSM	ENSMUSG00000117476.2	ENSMUST00000234959.2	313	1	-38	-69	-38	69	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAAGAGTAACTCACTGT	NA	False	NA	NA	False	NA	NA	NA	94915574	94915994	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr17_+_94915600_94916000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042812	chr17	+	450	5	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	3	19018	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_1	29.2232783924049	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057542	95101578	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95092912_95092936_95101454
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042813	chr17	+	355	4	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	3	19018	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_3	26.8493740874697	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057542	95101578	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr17_+_95057661_95063861_95063952_95092912_95092936_95101454
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042814	chr17	+	1284	10	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	48.1350979465191	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057542	95082560	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078540_95078667_95079284_95079389_95082319
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042836	chr18	+	2877	21	FSM	ENSMUSG00000024231.16	ENSMUST00000162301.8	3828	21	-13	964	-6	28	multi-exon	FALSE	canonical	3	782	junction_1	80.8420682565705	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTTTTCTATGATGACG	196	False	NA	100	True	NA	NA	NA	3383218	3435413	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042842	chr18	+	2932	1	FSM	ENSMUSG00000096528.2	ENSMUST00000179907.2	2686	1	-8	-238	-8	238	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTAAAACTTTACCTGCT	NA	False	NA	NA	False	NA	NA	NA	3471621	3474553	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_3471600_3474600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042844	chr18	+	2287	3	FSM	ENSMUSG00000024232.3	ENSMUST00000025075.3	5074	3	-860	3647	-860	-3647	multi-exon	FALSE	canonical	3	117	junction_2	19.5	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTGGTGTCTTTCATGA	NA	False	NA	24	True	AATATA	-19	NA	3507062	3512757	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_3508286_3511256_3511545_3511981
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042854	chr18	+	2654	9	FSM	ENSMUSG00000024234.8	ENSMUST00000025077.7	2651	9	-3	0	-3	0	multi-exon	FALSE	canonical	3	181	junction_2	18.3711730708738	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGATAACAGTATTTCTA	-15	True	NA	17	True	AATAAA	-18	NA	4375588	4397330	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042860	chr18	+	2073	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234422.2	2626	9	7	546	0	-3	multi-exon	FALSE	canonical	3	50	junction_2	58.5340445809103	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTCTCTAGTATCTATTT	-1	True	NA	15	True	AATAAA	-17	NA	4375602	4396782	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_4375779_4379568_4379742_4380672_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042886	chr18	+	214	1	Intergenic	novelGene_181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCCATCCTCAGCTAC	NA	False	NA	NA	False	NA	NA	NA	5951486	5951700	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr18_+_5951500_5951700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042891	chr18	-	3968	26	FSM	ENSMUSG00000006740.15	ENSMUST00000025083.14	6032	26	-10	2074	-10	13	multi-exon	TRUE	canonical	0	0	junction_8	215.348105169282	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAACTTAAAAATAAATTTA	-15	True	NA	NA	False	AATAAA	-4	NA	6241533	6203075	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_6203708_6208186_6208336_6208999_6209217_6210699_6210805_6211023_6211096_6211191_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042901	chr18	+	502	1	FSM	ENSMUSG00000073640.4	ENSMUST00000097682.4	411	1	-42	-49	-42	49	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTAAATAATTTAAAAAATG	-9	True	NA	NA	False	ATTAAA	-25	NA	6332589	6333091	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_6332600_6333100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042929	chr18	+	3716	14	FSM	ENSMUSG00000024283.16	ENSMUST00000167020.8	5208	14	-14	1506	-13	3	multi-exon	TRUE	canonical	3	380	junction_6	70.7547644077099	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACCTTGGCTTTTTTTTT	-2	True	NA	NA	False	AATAAA	-25	NA	7869182	7927522	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_7869616_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042945	chr18	+	1079	2	Intergenic	novelGene_182	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	67	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	9592760	9597953	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr18_+_9592989_9597102
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000042949	chr18	+	5193	1	Intergenic	novelGene_183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	9592760	9597953	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr18_+_9592800_9598000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043037	chr18	+	2185	20	FSM	ENSMUSG00000024410.16	ENSMUST00000025276.15	2170	20	-9	-6	-9	6	multi-exon	FALSE	canonical	3	252	junction_9	24.4724957266604	339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTGCTAACTCCCAAAGAA	NA	False	NA	NA	False	AATAAA	-21	NA	12301764	12323060	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043060	chr18	+	4856	32	NNC	ENSMUSG00000024421.17	novel	10548	75	NA	NA	19808	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	16.1479888600645	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGATGTTTTATAAGCAA	5010	False	NA	NA	False	AATAAA	-19	NA	12657063	12716070	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_+_12657178_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043070	chr18	-	2484	14	NNC	ENSMUSG00000044252.19	novel	2818	14	NA	NA	-3	0	intron_retention	FALSE	canonical	3	33	junction_13	94.3034884243106	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12996440	12888384	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996405
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043095	chr18	+	3459	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	308	-4	-41	4	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGGCTACATTGCATTCT	NA	False	NA	20	True	NA	NA	NA	13105287	13126011	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043118	chr18	-	2953	11	FSM	ENSMUSG00000037013.18	ENSMUST00000040924.9	3098	11	139	6	3	0	multi-exon	FALSE	canonical	3	178	junction_3	289.216597034126	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	-19	True	AATAAA	-17	NA	14815832	14758685	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043121	chr18	-	2746	9	NIC	ENSMUSG00000037013.18	novel	2911	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_3	296.915812984085	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	-19	True	AATAAA	-17	NA	14815823	14758685	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr18_-_14760369_14766599_14766734_14769552_14769676_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043128	chr18	+	1681	7	FSM	ENSMUSG00000036743.5	ENSMUST00000040860.3	1692	7	10	1	10	-1	multi-exon	TRUE	canonical	3	86	junction_2	7.18795288428261	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATAGAGTGTCTCCTTCA	NA	False	NA	9	True	NA	NA	NA	14839217	14895354	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_14839390_14854223_14854351_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043160	chr18	+	646	2	Intergenic	novelGene_184	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	15	True	NA	NA	NA	20895474	20911828	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr18_+_20895821_20911528
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043167	chr18	-	5399	29	NNC	ENSMUSG00000033382.16	novel	5194	29	NA	NA	-292	-84	at_least_one_novel_splicesite	TRUE	canonical	3	164	junction_9	17.2092464467595	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTAGATGCCTTTTTTA	NA	False	NA	-106	True	AATAAA	-23	NA	21029442	20950363	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_-_20951369_20952280_20952371_20953934_20954081_20958023_20958126_20961525_20961706_20964506_20964566_20964666_20964736_20966006_20966104_20968002_20968151_20969803_20970247_20974584_20974740_20977180_20977308_20978634_20978710_20979505_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001_20988134_20993489_20993596_20995951_20996053_20996524_20996676_20998083_20998200_20999006_20999261_21000816_21000911_21003655_21003810_21006939_21007115_21007671_21007762_21018119_21018315_21028967
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043211	chr18	+	2703	17	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-278	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	20.3987591534387	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGATCTTTCTCCCTCC	NA	False	NA	12	True	AATAAA	-24	NA	21194701	21233259	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_+_21194811_21194905_21195074_21200485_21200594_21203810_21203948_21208707_21208759_21209403_21209445_21213486_21213570_21217135_21217254_21219218_21219398_21221601_21221821_21222381_21222535_21224130_21224347_21226277_21226722_21227980_21228161_21229185_21229319_21230344_21230550_21233100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043213	chr18	+	2699	17	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-278	3	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_6	16.5481069536669	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGATCTTTCTCCCTCC	NA	False	NA	12	True	AATAAA	-24	NA	21194701	21233259	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_+_21194811_21194905_21195074_21200485_21200594_21203810_21203948_21208707_21208759_21209403_21209445_21213486_21213566_21217135_21217254_21219218_21219398_21221601_21221821_21222381_21222535_21224130_21224347_21226277_21226722_21227980_21228161_21229185_21229319_21230344_21230550_21233100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043223	chr18	-	3661	6	FSM	ENSMUSG00000042680.9	ENSMUST00000049260.7	4923	6	-5	1267	-5	19	multi-exon	FALSE	canonical	1	3	junction_2	4.12795348811006	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGTGTGTGTATGCACA	NA	False	NA	NA	False	NA	NA	NA	21433200	21261524	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_21263080_21264389_21264557_21280788_21281962_21301792_21301924_21369057_21369199_21432706
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043237	chr18	+	2455	4	FSM	ENSMUSG00000024276.8	ENSMUST00000060762.6	5472	4	-30	3047	-17	-3047	multi-exon	FALSE	canonical	3	23	junction_1	32.0659043568433	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAATGAACTTGAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	24087731	24094683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_24087919_24089395_24089911_24090111_24090254_24093072
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043279	chr18	+	1066	5	FSM	ENSMUSG00000024273.9	ENSMUST00000097646.5	1065	5	-32	31	-13	-31	multi-exon	FALSE	canonical	3	162	junction_2	17.066048165876	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGTTTTTATGATAAAGG	327	False	NA	-14	True	AATAAA	-26	NA	24603893	24610824	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_24604038_24604118_24604142_24606006_24606207_24608581_24608782_24610325
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043295	chr18	-	3891	10	FSM	ENSMUSG00000024270.12	ENSMUST00000070726.10	3882	10	-12	3	-12	-3	multi-exon	FALSE	canonical	3	75	junction_5	10.1153837126587	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGCCTTGTTCTCTTTCT	NA	False	NA	-3	True	ATTAAA	-15	NA	24736886	24712940	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_24714135_24715373_24715565_24717076_24717158_24718182_24718561_24722803_24722910_24729322_24729542_24730799_24730970_24732286_24732471_24733871_24734697_24736343
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043299	chr18	+	2779	22	FSM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	-8	695	-8	2	multi-exon	FALSE	canonical	3	667	junction_5	86.0279973411599	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCTGATTTTGCCTTA	NA	False	NA	92	True	TTTAAA	-12	NA	24737009	24771869	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043310	chr18	+	2771	15	FSM	ENSMUSG00000039616.11	ENSMUST00000068006.9	2903	15	132	0	-55	0	multi-exon	FALSE	canonical	2	8	junction_8	5.18878303533257	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCCTGCCATTATTGAG	NA	False	NA	15	True	ATTAAA	-15	NA	24786879	24834632	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_24787125_24793046_24793137_24797073_24797141_24799066_24799709_24803621_24803699_24807287_24807488_24809616_24809734_24812442_24812869_24816185_24816349_24819683_24819763_24821994_24822120_24825574_24825681_24828930_24829070_24832909_24833015_24834442
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043330	chr18	+	177	1	Intergenic	novelGene_185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGGTCTCTCGTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	30319598	30319775	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr18_+_30319600_30319800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043360	chr18	+	3439	8	FSM	ENSMUSG00000041915.10	ENSMUST00000115808.4	3385	8	-54	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	12.315578321287	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCTAAACTTCACCCCT	6867	False	NA	NA	False	TTTAAA	-26	NA	31892878	31915796	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_31893248_31894832_31894944_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913696
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043369	chr18	+	1081	4	FSM	ENSMUSG00000024258.5	ENSMUST00000025106.5	1015	4	-58	-8	-58	8	multi-exon	FALSE	canonical	3	694	junction_1	16.2138486760204	344	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATTTATTTGTTAATGG	NA	False	NA	29	True	AATAAA	-28	NA	31922153	31929762	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_31922298_31924892_31925074_31928340_31928437_31929102
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043378	chr18	+	4591	22	FSM	ENSMUSG00000024400.17	ENSMUST00000025264.8	4575	22	-16	0	-8	0	multi-exon	FALSE	canonical	3	169	junction_7	93.6872299310541	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGCACCCACTGTGCAG	5639	False	NA	39	True	AATACA	-22	NA	31937134	32040450	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32011076_32011204_32012723_32012879_32012990_32013070_32014224_32014336_32018428_32018524_32019069_32019157_32019707_32019848_32020749_32020903_32021122_32022194_32026042_32026152_32029653_32030090_32035376_32035541_32035634_32035731_32037288_32037505_32039818
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043412	chr18	+	3252	23	FSM	ENSMUSG00000038299.17	ENSMUST00000053663.11	4455	23	9	1194	9	0	multi-exon	FALSE	canonical	3	587	junction_7	67.2070318044693	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	8973	False	NA	14	True	ATTAAA	-7	NA	32970286	32999453	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043463	chr18	-	4248	23	NNC	ENSMUSG00000003778.15	novel	4468	22	NA	NA	11	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	141.962222887896	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTAGTATGACCCTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	34757643	34731663	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_-_34732632_34732844_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043468	chr18	-	3011	21	FSM	ENSMUSG00000003778.15	ENSMUST00000097626.10	3005	21	27	-33	-20	4	multi-exon	FALSE	canonical	3	148	junction_13	121.034540524596	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCCTTTGGTGTGTCC	NA	False	NA	-1	True	NA	NA	NA	34757627	34732878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043470	chr18	-	3020	21	FSM	ENSMUSG00000003778.15	ENSMUST00000115766.8	4258	21	27	1211	-20	4	multi-exon	FALSE	canonical	3	33	junction_11	140.007142674936	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCCTTTGGTGTGTCC	NA	False	NA	-1	True	NA	NA	NA	34757627	34732878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043488	chr18	+	3092	19	FSM	ENSMUSG00000003779.17	ENSMUST00000167161.9	3146	19	24	30	24	0	multi-exon	TRUE	canonical	3	115	junction_1	232.664995218447	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	5879	False	NA	23	True	AATAAA	-20	NA	34757689	34765858	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_34757906_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043495	chr18	+	3016	19	FSM	ENSMUSG00000003779.17	ENSMUST00000237407.2	3674	19	192	466	-80	6	multi-exon	FALSE	canonical	3	938	junction_13	99.0044268869321	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCAAATTTAGAAAAATAT	6169	False	NA	29	True	AATAAA	-26	NA	34757979	34765864	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043551	chr18	+	1025	1	NIC	ENSMUSG00000003779.17	novel	3146	19	NA	NA	-25	-1156	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAGAAGAGAAAAGGAAAGA	6224	False	NA	NA	False	AAGAAA	-1	NA	34758034	34759059	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr18_+_34758000_34759100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043563	chr18	-	2079	17	FSM	ENSMUSG00000024370.18	ENSMUST00000025228.12	2084	17	8	-3	-5	3	multi-exon	FALSE	canonical	3	73	junction_1	259.182247655969	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTACTGTTCTTTCTAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	34784780	34764000	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_34764355_34767135_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043583	chr18	-	1968	15	FSM	ENSMUSG00000044201.11	ENSMUST00000060710.9	1945	15	-23	0	-23	0	multi-exon	FALSE	canonical	3	155	junction_14	20.2922524674833	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2769	False	NA	-15	True	AATAAA	-22	NA	34884609	34866045	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043590	chr18	-	1944	15	NNC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	51.4319443338397	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2798	False	NA	-15	True	AATAAA	-22	NA	34884580	34866045	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876985_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043599	chr18	+	4282	5	FSM	ENSMUSG00000034300.18	ENSMUST00000097622.4	4256	5	-4	-22	-4	0	multi-exon	FALSE	canonical	3	31	junction_2	5.02493781056044	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTGTACGATAGTGTCT	5083	False	NA	26	True	AATAAA	-33	NA	34892604	34906813	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_34892651_34895547_34895778_34896125_34896184_34901220_34902006_34903650
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043613	chr18	-	225	2	Intergenic	novelGene_186	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTAGTTTACCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	35075819	35014261	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr18_-_35014468_35075800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043619	chr18	-	1071	1	ISM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	28152	0	28152	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTGTGCTTGAGATT	NA	False	NA	NA	False	ATTAAA	-16	NA	35036908	35035837	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr18_-_35035800_35036900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043621	chr18	-	3694	12	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	-10759	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	324.042441868702	173	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTGTGCTTGAGATT	NA	False	NA	NA	False	ATTAAA	-16	NA	35075819	35035837	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886_35065027_35075800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043622	chr18	-	3689	12	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	-10759	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	324.042441868702	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTGTGCTTGAGATT	NA	False	NA	NA	False	ATTAAA	-16	NA	35075819	35035837	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886_35065022_35075800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043650	chr18	-	2360	12	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	-10759	-1342	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	324.042441868702	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAAGATGATTTTGCTTG	NA	False	NA	-10	True	AATAAA	-31	NA	35075819	35037179	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886_35065035_35075800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043653	chr18	-	2354	12	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	-10759	-1342	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	417.875223576774	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAAGATGATTTTGCTTG	NA	False	NA	-10	True	AATAAA	-31	NA	35075819	35037179	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042985_35043166_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886_35065031_35075800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043664	chr18	-	1984	12	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	-10759	-1691	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	324.042441868702	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTCTTGGTCTCTGTT	NA	False	NA	-4	True	AATATA	-19	NA	35075819	35037528	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886_35065008_35075800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043677	chr18	-	3315	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	-266	0	-266	0	multi-exon	TRUE	canonical	3	5978	junction_5	267.479905787332	1293	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTCGTTGTAATCTTCT	NA	False	NA	-19	True	CATAAA	-5	NA	35087676	35070466	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043731	chr18	+	723	4	FSM	ENSMUSG00000117869.2	ENSMUST00000235679.2	1190	4	37	430	0	4	multi-exon	FALSE	canonical	3	167	junction_1	16.2685791225499	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGAATTTCATTGGCAT	NA	False	NA	NA	False	NA	NA	NA	35686460	35690939	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043807	chr18	+	3013	2	FSM	ENSMUSG00000046668.10	ENSMUST00000237291.2	1169	2	-141	-1703	-36	-771	multi-exon	FALSE	canonical	3	389	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAACTGCTTTTTCAGAA	NA	False	NA	NA	False	NA	NA	NA	35962804	35993970	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_35963293_35991445
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043817	chr18	+	2199	3	NIC	ENSMUSG00000046668.10	novel	857	2	NA	NA	-7	3	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	135.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTCCTGGCTTCTTGCTCT	NA	False	NA	37	True	AATAAA	-28	NA	35963359	35994744	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr18_+_35963453_35991445_35992510_35993702
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043826	chr18	+	868	3	FSM	ENSMUSG00000046727.14	ENSMUST00000050584.10	831	3	-38	1	0	-1	multi-exon	FALSE	canonical	3	759	junction_1	90	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTGACTTACTCCAGG	NA	False	NA	16	True	AATAAA	-16	NA	36481711	36536032	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_36481870_36499567_36499795_36535549
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043877	chr18	+	2372	4	FSM	ENSMUSG00000033272.13	ENSMUST00000050476.11	2362	4	4	-14	0	6	multi-exon	TRUE	canonical	3	118	junction_3	140.362229804017	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCTTCTGTGTTTCC	NA	False	NA	25	True	AATAAA	-43	NA	36812635	36816920	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_36812677_36813568_36813668_36814580_36814819_36814926
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043892	chr18	+	1852	12	FSM	ENSMUSG00000006850.9	ENSMUST00000007046.9	1823	12	-29	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	9.25845604107201	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTTGCCTCAGTGTTGC	NA	False	NA	53	True	AATAAA	-20	NA	36868091	36875450	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_36868310_36868440_36868554_36870509_36870626_36870721_36870906_36871148_36871254_36871414_36871501_36871680_36871798_36872005_36872118_36872207_36872395_36874104_36874200_36874714_36874883_36875099
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043910	chr18	+	1619	7	FSM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_5	28.487814158962	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGGTGCCAAGCTGGGA	NA	False	NA	4	True	AATAAA	-19	NA	36893272	36896863	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36895811_36895901_36896072_36896144
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043915	chr18	-	1493	4	FSM	ENSMUSG00000044595.11	ENSMUST00000061522.8	1451	4	-36	-6	-20	4	multi-exon	TRUE	canonical	3	43	junction_2	7.76029781788188	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGCTTGGTATACATGT	NA	False	NA	-2	True	ATTAAA	-20	NA	36899287	36896719	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_36897541_36898148_36898611_36898945_36899064_36899195
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043918	chr18	-	1974	13	FSM	ENSMUSG00000001380.8	ENSMUST00000001416.8	1989	13	16	-1	16	1	multi-exon	FALSE	canonical	3	550	junction_8	68.8118913334671	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTGTCCTTGATGCC	NA	False	NA	-1	True	AATAAA	-17	NA	36916242	36899579	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043937	chr18	+	1286	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	33	991	33	592	multi-exon	FALSE	canonical	3	554	junction_5	81.4331627778266	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGTTTCTTCTGTTTCAC	6649	False	NA	31	True	ATTAAA	-28	NA	36926961	36931728	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043966	chr18	-	2037	15	FSM	ENSMUSG00000024454.17	ENSMUST00000043498.9	2032	15	-4	-1	-4	1	multi-exon	FALSE	canonical	3	500	junction_2	40.0044002681746	339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTAGTTAGGCCATGT	NA	False	NA	-4	True	AATAAA	-22	NA	38088073	38070023	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38076805_38077181_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043977	chr18	+	2412	13	FSM	ENSMUSG00000024442.7	ENSMUST00000025314.7	2394	13	-16	-2	-12	2	multi-exon	FALSE	canonical	3	315	junction_6	27.9179104200551	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGCCCTTGAGTGTGTT	3951	False	NA	22	True	AATAAA	-23	NA	38383295	38395684	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38387620_38390310_38390454_38391080_38391240_38391322_38391416_38392949_38393110_38394116_38394339_38394932
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000043982	chr18	+	2386	13	NNC	ENSMUSG00000024442.7	novel	2394	13	NA	NA	0	-3	intron_retention	FALSE	canonical	2	15	junction_2	102.481265225514	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCGGTCTTGCCCTTGAGT	3967	False	NA	17	True	AATAAA	-18	NA	38383311	38395679	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_+_38383453_38384138_38384254_38384340_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38387620_38390310_38390454_38391080_38391240_38391322_38391416_38392949_38393110_38394116_38394339_38394932
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044006	chr18	+	3161	11	NIC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	2	2	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	89.3559734992575	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGTAGACACGGTGTCC	963	False	NA	18	True	AATAAA	-23	NA	38429724	38450897	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr18_+_38429852_38430552_38430629_38431361_38431449_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044024	chr18	-	2291	7	FSM	ENSMUSG00000052102.16	ENSMUST00000063814.15	2289	7	21	-23	-2	0	multi-exon	FALSE	canonical	3	1055	junction_1	137.188434886716	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCATTCTCCTGAGTT	NA	False	NA	-7	True	AATAAA	-17	NA	38472035	38460587	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044032	chr18	-	2085	6	FSM	ENSMUSG00000052102.16	ENSMUST00000235590.2	2085	6	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	488.205448556241	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTTGTGAATTTTG	NA	False	NA	-22	True	AATAAA	-2	NA	38472029	38460602	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_38462027_38463538_38463714_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044077	chr18	-	3862	32	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	516.936221628984	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGGCCATGTTATTTA	NA	False	NA	-10	True	AATAAA	-16	NA	42395184	42335413	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361718_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369643_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044113	chr18	+	2344	4	ISM	ENSMUSG00000024498.17	ENSMUST00000236088.2	2365	16	3	38421	1	-10516	5prime_fragment	FALSE	canonical	3	655	junction_3	28.6006992921502	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTCCAAAGGTTAGAGG	NA	False	NA	NA	False	NA	NA	NA	42644566	42658838	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044124	chr18	-	2440	1	FSM	ENSMUSG00000043424.11	ENSMUST00000057110.11	2379	1	-61	0	-61	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGGTACAGGCGTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	43610922	43608482	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_43608500_43610900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044130	chr18	+	401	2	FSM	ENSMUSG00000024472.10	ENSMUST00000202306.2	398	2	0	-3	0	3	multi-exon	FALSE	canonical	3	169	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTTTTTGTTTTTCTTT	NA	False	NA	16	True	AATAAA	-17	NA	44513568	44529155	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_44513754_44528939
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044135	chr18	+	851	4	ISM	ENSMUSG00000034653.12	ENSMUST00000037763.11	7215	30	739	55130	739	-14619	5prime_fragment	FALSE	canonical	3	27	junction_3	6.94422221866655	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGTTAAAATAATTAAGGAA	NA	False	NA	NA	False	AAGAAA	-1	NA	44961551	44967654	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr18_+_44961986_44963218_44963310_44966088_44966286_44967525
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044173	chr18	-	2493	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	0	2272	0	-2272	multi-exon	FALSE	canonical	3	312	junction_1	11.8977121983832	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTTATTGTCACATAAAA	NA	False	NA	-1	True	AATAAA	-28	NA	46874646	46865482	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044182	chr18	+	2260	5	FSM	ENSMUSG00000073568.3	ENSMUST00000234910.2	2257	5	-9	6	-9	4	multi-exon	FALSE	canonical	3	262	junction_1	19.1441897190766	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTTCAGGGTTTCT	NA	False	NA	20	True	AATAAA	-16	NA	47054872	47067293	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_47054960_47059048_47059157_47059378_47059483_47061585_47061726_47065472
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044188	chr18	+	1598	7	FSM	ENSMUSG00000042705.10	ENSMUST00000049388.9	1610	7	17	-5	17	5	multi-exon	FALSE	canonical	3	1216	junction_3	103.11913282973	592	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTACAATGTTTTTATTTT	NA	False	NA	31	True	AATAAA	-32	NA	47091899	47221067	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044206	chr18	+	545	1	FSM	ENSMUSG00000117621.2	ENSMUST00000234633.2	515	1	-1	-29	-1	29	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCCACTATTATTTTGTG	NA	False	NA	NA	False	AATAAA	-22	NA	47245204	47245749	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_47245200_47245700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044207	chr18	+	1775	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	-27	-1	8	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACATAGCTGTTACTATT	NA	False	NA	NA	False	NA	NA	NA	48179712	48181487	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_48179700_48181500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044215	chr18	-	2458	6	FSM	ENSMUSG00000024505.17	ENSMUST00000163590.9	3145	6	20	667	-14	661	multi-exon	FALSE	canonical	3	168	junction_3	20.6145579627602	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTGCTATGATTGCTCT	NA	False	NA	-1	True	AATAAA	-15	NA	49888648	49829878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_49831568_49833325_49833455_49856688_49856882_49857179_49857275_49861435_49861527_49888387
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044228	chr18	+	2674	24	FSM	ENSMUSG00000024507.7	ENSMUST00000025385.7	2684	24	8	2	8	-2	multi-exon	FALSE	canonical	3	285	junction_3	18.279183363144	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTCCTGCTCCTCTTTGC	NA	False	NA	12	True	AATAAA	-21	NA	50261275	50329334	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275536_50275559_50275659_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316365_50324778_50324907_50328921
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044265	chr18	+	4257	12	NNC	ENSMUSG00000073563.4	novel	4249	13	NA	NA	-23	12	at_least_one_novel_splicesite	TRUE	canonical	3	113	junction_8	32.497425199977	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTTTTTTTAAACTCGC	NA	False	NA	NA	False	TTTAAA	-40	NA	53995170	54088632	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_+_53995673_54028602_54029027_54035924_54035966_54039671_54039742_54050046_54050196_54051870_54052106_54063140_54063227_54063349_54063435_54065265_54065412_54066521_54066618_54081119_54081227_54086316
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044283	chr18	+	1555	5	FSM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	183	204	183	-204	multi-exon	FALSE	canonical	3	376	junction_1	34.4818792991333	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTCAGCTGTTACATTCA	NA	False	NA	NA	False	ATTAAA	-22	NA	56706076	56720580	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_56706208_56708533_56709121_56713251_56713373_56717362_56717447_56719948
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044288	chr18	+	209	1	Intergenic	novelGene_187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCCTGTGGGAGAATAA	NA	False	NA	NA	False	NA	NA	NA	56777312	56777521	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr18_+_56777300_56777500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044296	chr18	+	218	1	Intergenic	novelGene_188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTCCTTTGCCCTCTACC	NA	False	NA	NA	False	AAGAAA	-5	NA	56807517	56807735	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr18_+_56807500_56807700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044302	chr18	+	3122	11	FSM	ENSMUSG00000024590.9	ENSMUST00000025486.9	2843	11	-278	-1	-278	1	multi-exon	FALSE	canonical	3	1085	junction_1	118.73230394463	556	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTGTTCTTTTTAACCCT	NA	False	NA	21	True	AATAAA	-20	NA	56840606	56886497	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_56841547_56861472_56861630_56862358_56862485_56864041_56864213_56866283_56866410_56872892_56873114_56873758_56873985_56876282_56876388_56881048_56881169_56882770_56882882_56885678
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044327	chr18	+	5030	9	FSM	ENSMUSG00000024594.10	ENSMUST00000025490.10	5030	9	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_4	197.841121547064	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGTGCAATGATTTAAATG	NA	False	NA	12	True	AATAAA	-22	NA	57487812	57526028	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_57487964_57495504_57495622_57496147_57496538_57498260_57498422_57504438_57504542_57507598_57507763_57514699_57514804_57517245_57517349_57522291
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044346	chr18	+	225	1	Intergenic	novelGene_189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATTAATAATTAAACAGTG	NA	False	NA	NA	False	NA	NA	NA	60612445	60612670	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr18_+_60612400_60612700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044359	chr18	+	2130	11	FSM	ENSMUSG00000024604.8	ENSMUST00000025506.7	2210	11	-1	81	-1	-81	multi-exon	FALSE	canonical	3	519	junction_10	72.8288404411329	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGACTTATGTTTCTTTT	NA	False	NA	22	True	ATTAAA	-23	NA	60693806	60705801	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_60693952_60694322_60694377_60696837_60696868_60697434_60697568_60698689_60698791_60699424_60699598_60700442_60700644_60702428_60702594_60703852_60703942_60704071_60704204_60704894
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044379	chr18	+	610	5	FSM	ENSMUSG00000024608.12	ENSMUST00000118551.8	602	5	-3	-5	-3	0	multi-exon	FALSE	canonical	3	252	junction_1	11592.6756914657	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTGGTGTTGTGT	NA	False	NA	68	True	AATAAA	-18	NA	60907749	60911618	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_60907854_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044385	chr18	-	4552	25	NNC	ENSMUSG00000024613.17	novel	4529	25	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	292.136526302344	1303	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	-18	True	AATAAA	-17	NA	60982062	60946826	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962081_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044417	chr18	-	3944	22	NNC	ENSMUSG00000024613.17	novel	4529	25	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	366.449620361433	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGACTGCTTTCCAGT	NA	False	NA	0	True	AAAAAG	-17	NA	60982033	60949072	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_-_60949597_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962081_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044455	chr18	-	1771	3	FSM	ENSMUSG00000024619.9	ENSMUST00000025521.9	1750	3	-21	0	-21	0	multi-exon	FALSE	canonical	3	995	junction_1	57.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTGCCATCCTTTCTCGT	7733	False	NA	-5	True	ATTAAA	-22	NA	61169292	61151933	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_61153014_61153445_61153592_61168747
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044457	chr18	-	1874	4	NNC	ENSMUSG00000024619.9	novel	1750	3	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_3	439.390486924785	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTGCCATCCTTTCTCGT	7733	False	NA	-5	True	ATTAAA	-22	NA	61169292	61151933	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_-_61153014_61153445_61153592_61157113_61157217_61168747
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044505	chr18	+	2421	11	FSM	ENSMUSG00000024576.15	ENSMUST00000167187.8	1222	11	-424	-775	-9	2	multi-exon	TRUE	canonical	0	0	junction_10	819.69914602859	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGTGAAATTTTTTTAAA	419	False	NA	29	True	ATTAAA	-22	NA	61688335	61721377	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044516	chr18	+	2452	11	FSM	ENSMUSG00000024576.15	ENSMUST00000170862.8	2259	11	-69	-124	-4	2	multi-exon	FALSE	canonical	3	229	junction_5	708.334701959462	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGTGAAATTTTTTTAAA	424	False	NA	29	True	ATTAAA	-22	NA	61688340	61721377	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044520	chr18	+	1620	9	FSM	ENSMUSG00000024576.15	ENSMUST00000163205.8	3204	9	-55	1639	-1	-1493	multi-exon	FALSE	canonical	3	1742	junction_4	121.033053336682	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGTCCTTGGAAAATTTGA	427	False	NA	NA	False	CATAAA	-31	NA	61688343	61713694	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044528	chr18	+	2312	2	FSM	ENSMUSG00000024576.15	ENSMUST00000165381.2	2275	2	-23	-14	-1	14	multi-exon	FALSE	canonical	3	1813	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTCATTGCCTTTTCAAT	466	False	NA	NA	False	TTTAAA	-12	NA	61688382	61691323	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_61688945_61689573
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044533	chr18	+	622	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183087.2	588	3	-37	3	-37	-3	multi-exon	FALSE	canonical	3	52	junction_1	11.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACGAATGACTTTCTTAA	NA	False	NA	14	True	AATAAA	-14	NA	61772686	61780540	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_61772840_61778233_61778437_61780274
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044541	chr18	-	4071	4	FSM	ENSMUSG00000024580.9	ENSMUST00000062991.9	4038	4	-33	0	-31	0	multi-exon	FALSE	canonical	3	248	junction_1	10.9645894689324	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTCGAGTTCTCTCATGA	NA	False	NA	-2	True	ATTAAA	-14	NA	61859427	61845494	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_61849199_61851824_61851907_61852772_61852927_61859296
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044556	chr18	-	4385	22	FSM	ENSMUSG00000042211.8	ENSMUST00000048688.8	4254	22	-37	-94	-37	94	multi-exon	FALSE	canonical	3	214	junction_21	37.2590368590547	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGCCATGGACTTGAAA	NA	False	NA	46	True	AATAAA	-17	NA	62681803	62637131	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044587	chr18	+	209	1	Intergenic	novelGene_190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCACCTCCTGCTGCCAGC	NA	False	NA	NA	False	NA	NA	NA	64461411	64461620	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr18_+_64461400_64461600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044597	chr18	-	2074	10	FSM	ENSMUSG00000024588.11	ENSMUST00000025484.9	2059	10	-15	0	-5	0	multi-exon	FALSE	canonical	3	22	junction_9	95.9785212597583	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGCTGTGTACGCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	64622149	64590335	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64621971
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044604	chr18	-	2650	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	95	0	-2	0	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	543	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTGACTTATTTTCTC	NA	False	NA	NA	False	AATAAA	-31	NA	64649628	64632717	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044647	chr18	-	3564	14	FSM	ENSMUSG00000041891.17	ENSMUST00000048260.15	3581	14	1	16	1	3	multi-exon	FALSE	canonical	3	538	junction_1	125.2370060817	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTTCCTCCATTGA	NA	False	NA	-19	True	AATAAA	-18	NA	66135709	66113824	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_66115782_66116895_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044653	chr18	-	4681	13	FSM	ENSMUSG00000041891.17	ENSMUST00000236866.2	4676	13	-2	-3	-2	3	multi-exon	FALSE	canonical	3	864	junction_5	66.5663307452716	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTTCCTCCATTGA	NA	False	NA	-19	True	AATAAA	-18	NA	66135712	66113824	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044666	chr18	+	217	1	Antisense	novelGene_ENSMUSG00000118131.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAAGAGGAAGTCATCTA	NA	False	NA	NA	False	AATAAA	-2	NA	67284169	67284386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr18_+_67284200_67284400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044706	chr18	+	1767	4	FSM	ENSMUSG00000001473.8	ENSMUST00000001513.8	1758	4	-9	0	-9	0	multi-exon	FALSE	canonical	3	606	junction_3	34.2928563989645	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGGTCTCTTGAACTTC	NA	False	NA	12	True	AATAAA	-14	NA	67523777	67535819	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_67523885_67524394_67524504_67526015_67526127_67534379
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044709	chr18	-	3153	17	FSM	ENSMUSG00000024527.11	ENSMUST00000025408.10	3094	17	-55	-4	-55	4	multi-exon	FALSE	canonical	3	685	junction_14	36.0532917186489	326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTGCCATGTTGTGCTTA	NA	False	NA	2	True	AATAAA	-35	NA	67582297	67537829	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_67538585_67540335_67540531_67542467_67542669_67547147_67547264_67548568_67548680_67554055_67554182_67554277_67554386_67556014_67556169_67558958_67559097_67562050_67562325_67564723_67564849_67567224_67567300_67573251_67573405_67573511_67573616_67575379_67575458_67575820_67575921_67581957
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044722	chr18	+	193	1	Intergenic	novelGene_191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCAGTATGTTTACATT	NA	False	NA	NA	False	NA	NA	NA	67738709	67738902	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr18_+_67738700_67738900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044739	chr18	+	3542	9	FSM	ENSMUSG00000079614.5	ENSMUST00000025421.9	3542	9	0	0	0	0	multi-exon	FALSE	canonical	3	1509	junction_8	173.331285043987	347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTGTCTTATAAAAAAG	NA	False	NA	19	True	AATAAA	-21	NA	67907945	67928557	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044752	chr18	+	2465	17	ISM	ENSMUSG00000024542.10	ENSMUST00000025425.7	8093	46	0	50514	0	4363	5prime_fragment	FALSE	canonical	3	91	junction_4	13.350444749146	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGGAAGAAGCAAGCCTT	107	False	NA	NA	False	NA	NA	NA	67933176	67967727	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435_67937565_67940327_67940477_67943146_67943200_67945396_67945518_67946942_67947071_67948924_67949067_67949803_67949932_67951840_67952202_67953359_67953504_67956345_67956411_67957652_67957863_67961421_67961546_67962903_67963035_67967566
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044766	chr18	+	2079	11	FSM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	-8	2937	-8	9	multi-exon	FALSE	canonical	3	765	junction_7	139.06832852954	420	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGAGACTCTATAGACGA	NA	False	NA	96	True	AATAAA	-26	NA	68433417	68454986	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044788	chr18	+	2433	20	FSM	ENSMUSG00000053477.19	ENSMUST00000114980.8	2192	20	-166	-75	21	23	multi-exon	FALSE	canonical	3	47	junction_6	22.735258229433	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAACTTGAGGGACGACTT	3665	False	NA	139	True	NA	NA	NA	69479264	69816371	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_69479437_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811201_69814639_69814870_69815753_69815895_69816147
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044819	chr18	-	2303	9	NIC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-2	1	combination_of_known_splicesites	FALSE	canonical	3	116	junction_8	75.0961883187156	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCTCTCACTGTAAGTTG	NA	False	NA	-14	True	AATAAA	-21	NA	70663341	70641752	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70663258
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044837	chr18	-	201	1	Intergenic	novelGene_192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTATTTATTTAAATA	NA	False	NA	NA	False	NA	NA	NA	73623979	73623778	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr18_-_73623800_73624000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044841	chr18	-	2864	16	FSM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	-24	-202	-13	202	multi-exon	FALSE	canonical	3	442	junction_8	47.5095312074909	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATTTATTTGAGTACA	347	False	NA	NA	False	TTTAAA	-14	NA	73948533	73902771	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_73903880_73906200_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938241_73948374
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044856	chr18	-	1113	7	FSM	ENSMUSG00000036223.17	ENSMUST00000177604.2	2605	7	33	1459	-6	-279	multi-exon	FALSE	canonical	3	429	junction_6	32.9768437274131	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTTTAGGAACGTGGGT	6759	False	NA	0	True	AGTAAA	-35	NA	74340856	74329828	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340664
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044869	chr18	+	2623	15	FSM	ENSMUSG00000024560.8	ENSMUST00000025444.8	2620	15	0	-3	0	0	multi-exon	TRUE	canonical	3	205	junction_6	27.3663729300567	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTCTCTCAATAGTCTC	NA	False	NA	17	True	AATAAA	-20	NA	74349201	74354567	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_74349554_74350237_74350357_74350459_74350561_74350831_74351068_74351156_74351349_74351699_74351727_74351802_74352049_74352201_74352310_74352453_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354052_74354129
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044929	chr18	+	1086	3	FSM	ENSMUSG00000036299.6	ENSMUST00000237263.2	1266	3	-35	215	-3	4	multi-exon	FALSE	canonical	3	388	junction_1	205.5	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTTTTTGTCTTTTCAT	NA	False	NA	30	True	ATTAAA	-21	NA	75138935	75143008	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_75139186_75141721_75141898_75142348
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000044956	chr18	+	1023	1	Genic_Genomic	ENSMUSG00000025880.12	novel	NA	NA	NA	NA	-172	-25607	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTGCCTGCCTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-1	NA	75500427	75501450	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr18_+_75500400_75501400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045001	chr18	+	2288	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	2	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	93	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTAGCATTTATGCTTT	6432	False	NA	21	True	ATTAAA	-33	NA	77126250	77234635	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045004	chr18	+	5185	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	1910	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	72	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6432	False	NA	7	True	AATAAA	-18	NA	77126250	77243406	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045032	chr18	+	2218	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	254	-1	-9	1	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTGGTTGATGAGTCC	NA	False	NA	21	True	ATTAAA	-23	NA	77861682	77870570	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045041	chr18	+	341	1	ISM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	8800	0	2697	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTGGTTGATGAGTC	NA	False	NA	20	True	ATTAAA	-22	NA	77870228	77870569	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr18_+_77870200_77870600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045056	chr18	-	4981	4	FSM	ENSMUSG00000053950.11	ENSMUST00000066743.11	5012	4	4	27	4	-27	multi-exon	FALSE	canonical	3	132	junction_3	18.0800688297608	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTCAATTCTTGTAACGC	5940	False	NA	60	True	AATAAA	-2	NA	80194693	80169552	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_80174210_80180698_80180789_80185863_80185985_80194580
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045068	chr18	-	328	1	Genic_Genomic	ENSMUSG00000024570.8	novel	NA	NA	NA	NA	2612	1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTTTGTGTATACGCACA	1072	False	NA	-2	True	AATAAA	-21	NA	80235806	80235478	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr18_-_80235500_80235800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045107	chr18	+	702	4	NIC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	1	196	combination_of_known_junctions	FALSE	canonical	3	109	junction_1	1089.22796308007	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTGCTTACTGCGTGC	NA	False	NA	16	True	AATAAA	-24	NA	80250109	80265749	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr18_+_80250162_80250368_80250559_80261918_80262023_80265393
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045138	chr18	-	4148	4	FSM	ENSMUSG00000024565.11	ENSMUST00000057950.9	7079	4	113	2818	113	28	multi-exon	FALSE	canonical	3	26	junction_2	9.39266853573691	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCCTTAGGAACAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	81029873	81012408	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_81013120_81014395_81014737_81014952_81017845_81029669
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045141	chr18	+	1636	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	-105	-176	-105	176	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACATTGTCTGGTGCACC	NA	False	NA	NA	False	AGTAAA	-38	NA	82356481	82358117	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_82356500_82358100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045152	chr18	+	3169	5	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	-15034	1023	at_least_one_novel_splicesite	FALSE	canonical	3	187	junction_2	10.2713192920871	41	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATAATTTTACATGTACA	NA	False	NA	NA	False	AATATA	-17	NA	82990898	83020848	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_+_82990974_83004868_83006324_83011194_83011315_83012594_83012663_83019397
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045153	chr18	+	2981	3	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	-15034	1023	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	87	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATAATTTTACATGTACA	NA	False	NA	NA	False	AATATA	-17	NA	82990898	83020848	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr18_+_82990974_83004868_83006324_83019397
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045184	chr18	+	2086	10	FSM	ENSMUSG00000034391.13	ENSMUST00000224467.3	1910	10	-173	-3	-173	3	multi-exon	FALSE	canonical	3	723	junction_3	71.0602248487546	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGTGTCTTATTTTCT	627	False	NA	29	True	AATAAA	-18	NA	84952733	84999601	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045192	chr18	-	1321	6	FSM	ENSMUSG00000024645.6	ENSMUST00000025547.4	2418	6	0	1097	0	0	multi-exon	FALSE	canonical	3	52	junction_4	6.15142259969188	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGTTAAAAGCATTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	84969649	84965412	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_84965871_84965958_84966065_84966147_84966222_84967318_84967417_84967514_84967578_84969127
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045198	chr18	-	2801	4	FSM	ENSMUSG00000056153.16	ENSMUST00000145120.3	1004	4	-34	-1763	-5	8	multi-exon	FALSE	canonical	3	33	junction_2	77.821733611005	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGCCTTTTCTGTCATT	NA	False	NA	3	True	ATTAAA	-33	NA	88912468	88886610	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr18_-_88889043_88905115_88905177_88905332_88905458_88912285
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045248	chr19	-	4967	24	FSM	ENSMUSG00000024908.16	ENSMUST00000113997.9	4952	24	-10	-5	-10	0	multi-exon	FALSE	canonical	3	249	junction_9	67.9031613363524	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCGTGAGCCTTTTTG	NA	False	NA	NA	False	AATAAA	-24	NA	3625759	3504927	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045265	chr19	+	207	1	Intergenic	novelGene_193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGGTTCTGGAAGGCAA	NA	False	NA	NA	False	NA	NA	NA	3567031	3567238	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr19_+_3567000_3567200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045268	chr19	-	5214	23	NNC	ENSMUSG00000024913.17	novel	5161	23	NA	NA	-34	7	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	24.9192497532422	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTGTGCCTCGTGAAT	7785	False	NA	7	True	TATAAA	-27	NA	3736598	3634820	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_3635292_3636382_3636481_3640973_3641114_3641615_3641853_3643515_3643627_3647243_3647481_3650672_3650799_3652234_3652445_3654001_3654193_3655285_3655495_3660034_3660239_3662197_3662522_3664225_3664411_3665652_3665880_3670014_3670305_3672509_3672727_3678272_3678445_3680073_3680471_3697527_3697660_3699403_3699601_3702132_3702331_3709243_3709641_3736354
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045276	chr19	+	1917	4	FSM	ENSMUSG00000035372.3	ENSMUST00000039048.2	1882	4	-34	-1	6	1	multi-exon	FALSE	canonical	3	184	junction_1	53.9897109539298	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTGGGTCTGTGTGT	NA	False	NA	12	True	ATTAAA	-24	NA	3758298	3767882	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_3758437_3764403_3764626_3765637_3765803_3766490
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045277	chr19	+	1912	4	FSM	ENSMUSG00000035372.3	ENSMUST00000237320.2	772	4	6	-1146	6	0	multi-exon	FALSE	canonical	3	113	junction_1	87.4541149530554	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGTGGGTCTGTGT	NA	False	NA	10	True	ATTAAA	-22	NA	3758298	3767880	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_3758437_3764406_3764626_3765637_3765803_3766490
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045292	chr19	+	2657	12	FSM	ENSMUSG00000024843.16	ENSMUST00000025760.13	2319	12	-329	-9	-26	4	multi-exon	FALSE	canonical	3	76	junction_2	51.157187679149	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTTACCCTTCATATGT	5694	False	NA	10	True	AATAAA	-21	NA	3901746	3944373	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_3902414_3914647_3914760_3925734_3925789_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045320	chr19	+	2749	14	NIC	ENSMUSG00000024843.16	novel	2683	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	87.0287308881383	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGACTGTTACCCTTC	5779	False	NA	4	True	AATAAA	-15	NA	3901831	3944367	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_3902414_3914647_3914760_3921002_3921063_3925734_3925789_3931997_3932121_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045329	chr19	-	2648	20	FSM	ENSMUSG00000001750.17	ENSMUST00000001801.11	2688	20	40	0	19	0	multi-exon	FALSE	canonical	3	39	junction_12	8.58007741992203	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCTGTCCTCTCTG	NA	False	NA	0	True	AATAAA	-20	NA	3957093	3946049	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952036_3952343_3952557_3952630_3952725_3952881_3952965_3953045_3953173_3953339_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045361	chr19	+	1286	8	FSM	ENSMUSG00000024866.11	ENSMUST00000236510.2	1284	8	0	-2	0	0	multi-exon	FALSE	canonical	3	15	junction_1	10.3332236114429	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACAGTTCTTGTTCTTTG	NA	False	NA	5	True	TATAAA	-19	NA	4036569	4040007	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_4036612_4036822_4036952_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045365	chr19	+	777	4	FSM	ENSMUSG00000110949.2	ENSMUST00000025802.10	787	4	12	-2	12	2	multi-exon	FALSE	canonical	3	59	junction_1	10.4243305140746	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCATCTTCCGTGTGG	3525	False	NA	11	True	ATTAAA	-20	NA	4050591	4052105	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_4050848_4051195_4051329_4051627_4051706_4051795
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045398	chr19	-	761	7	FSM	ENSMUSG00000060803.7	ENSMUST00000169613.4	821	7	60	0	0	0	multi-exon	FALSE	canonical	3	1999	junction_6	828.939215034626	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4087925	4085406	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045402	chr19	-	578	5	Fusion	ENSMUSG00000058216.14_ENSMUSG00000060803.7	novel	821	7	NA	NA	470	-61	multi-exon	FALSE	canonical	0	0	junction_3	1868.4087313808	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTGGACTGAAGAGACAAGA	9694	False	NA	NA	False	NA	NA	NA	4108825	4085474	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr19_-_4085662_4085823_4085932_4086687_4086792_4108528_4108617_4108734
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045409	chr19	-	895	8	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_6	1378.94109033426	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4096015	4090284	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092566_4092672_4095923
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045421	chr19	+	1371	4	FSM	ENSMUSG00000024856.11	ENSMUST00000025779.11	1080	4	-288	-3	-288	1	multi-exon	FALSE	canonical	3	620	junction_3	36.1754981536767	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCTGTGTGTGGTTCCT	6588	False	NA	37	True	AATAAA	-26	NA	4146893	4149020	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_4147508_4147816_4147918_4148004_4148138_4148497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045440	chr19	+	951	7	FSM	ENSMUSG00000024845.20	ENSMUST00000140267.10	938	7	-7	-6	-7	1	multi-exon	FALSE	canonical	3	568	junction_2	70.8411760364142	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTTGCACTTTCCTGGG	4363	False	NA	NA	False	AATAAA	-22	NA	4175951	4181732	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045450	chr19	+	1061	6	FSM	ENSMUSG00000024845.20	ENSMUST00000130619.11	1615	6	1	553	1	0	multi-exon	FALSE	canonical	3	568	junction_2	76.3952878127964	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACAGTTGCACTTTCCTGG	4372	False	NA	NA	False	AATAAA	-21	NA	4175960	4181731	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181029_4181075_4181227_4181282_4181360
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045466	chr19	+	1898	11	FSM	ENSMUSG00000024835.16	ENSMUST00000008893.9	1888	11	-9	-1	-9	1	multi-exon	TRUE	canonical	3	251	junction_1	114.751906302248	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACCTACTGTTGTGGA	3566	False	NA	19	True	AATAAA	-20	NA	4198608	4204035	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_4198736_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045494	chr19	+	1948	10	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	0	-2	intron_retention	FALSE	canonical	3	402	junction_1	79.8759841223016	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGGTTTGACCTACTGTT	3610	False	NA	14	True	AATAAA	-15	NA	4198652	4204030	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045526	chr19	-	2130	11	FSM	ENSMUSG00000024824.8	ENSMUST00000025740.8	2081	11	-49	0	-23	0	multi-exon	FALSE	canonical	3	334	junction_4	40.0660704337224	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTGTGTTCCCCGTGAC	5949	False	NA	0	True	AATAAA	-15	NA	4251684	4245194	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045551	chr19	-	3697	10	NIC	ENSMUSG00000054611.18	novel	8578	21	NA	NA	-23	-86	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	36.3402983470227	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCGGAACTGTTCTGGGT	4148	False	NA	NA	False	NA	NA	NA	4384052	4367819	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_-_4369310_4370179_4370396_4370925_4371085_4372414_4372579_4374364_4375075_4376836_4376927_4378155_4378288_4378980_4379251_4381213_4381298_4383670
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045586	chr19	-	1440	8	FSM	ENSMUSG00000024889.6	ENSMUST00000025823.6	1425	8	-13	-2	-12	0	multi-exon	FALSE	canonical	3	266	junction_6	48.136286113662	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTCTTGGAACCTTGGG	NA	False	NA	-11	True	ATTAAA	-19	NA	4675681	4672620	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675220_4675324_4675460
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045614	chr19	-	2297	3	NIC	ENSMUSG00000096370.9	novel	2432	3	NA	NA	4	13	combination_of_known_splicesites	FALSE	canonical	3	35	junction_2	17.5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAACGAAGAAGAAAATATAT	7800	False	NA	NA	False	TTTAAA	-15	NA	4861627	4841173	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_-_4842849_4843843_4844038_4861199
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045630	chr19	-	2782	3	NNC	ENSMUSG00000006456.11	novel	3165	3	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	200.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTGTCATTGTCTTGA	7800	False	NA	0	True	AATAAA	-27	NA	4861627	4850949	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_4851834_4852573_4854044_4861199
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045636	chr19	-	3526	2	FSM	ENSMUSG00000006456.11	ENSMUST00000113793.4	3508	2	-18	0	-18	0	multi-exon	FALSE	canonical	3	401	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTGTCATTGTCTTGA	7796	False	NA	0	True	AATAAA	-27	NA	4861631	4850949	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_4854044_4861199
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045648	chr19	+	1976	14	FSM	ENSMUSG00000083282.4	ENSMUST00000119694.3	1980	14	0	4	0	3	multi-exon	FALSE	canonical	3	86	junction_8	8.77530154238379	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGTAAGTGCTT	NA	False	NA	6	True	AATAAA	-17	NA	4905157	4910942	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_4905515_4905725_4905825_4906097_4906183_4906274_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045660	chr19	+	2551	3	FSM	ENSMUSG00000006463.14	ENSMUST00000006632.8	2558	3	5	2	5	0	multi-exon	TRUE	canonical	3	97	junction_1	34	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCATGTCTTTTTGTTTGT	NA	False	NA	20	True	NA	NA	NA	4928704	4935423	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_4929058_4930148_4930427_4933503
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045666	chr19	+	2300	3	FSM	ENSMUSG00000006463.14	ENSMUST00000162134.2	2314	3	14	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	74.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCATGTCTTTTTGTTTGT	NA	False	NA	20	True	NA	NA	NA	4928731	4935423	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_4928834_4930148_4930427_4933503
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045679	chr19	-	2654	18	NNC	ENSMUSG00000063904.5	novel	2683	18	NA	NA	-6	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	199.074762955214	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCAGTGTATGTTTCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	4978281	4957256	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968042_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045695	chr19	+	217	1	Intergenic	novelGene_194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCTAGAAACCATCTAAAATA	NA	False	NA	NA	False	NA	NA	NA	4975021	4975238	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr19_+_4975000_4975200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045709	chr19	+	2230	11	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	23.4795655837156	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCCTGGAGTGTTCACT	4309	False	NA	18	True	ATTAAA	-19	NA	5074138	5081997	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045738	chr19	-	1877	6	FSM	ENSMUSG00000024870.7	ENSMUST00000025804.7	1913	6	36	0	-31	0	multi-exon	FALSE	canonical	3	994	junction_1	78.6628247649422	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGGTGACTGAGTGTGG	1537	False	NA	0	True	AATAAA	-43	NA	5157064	5149232	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_5150601_5150694_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045742	chr19	-	2944	16	NIC	ENSMUSG00000024862.17	novel	2940	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_15	17.0507738501479	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTGTTTTGAGGAGT	NA	False	NA	-1	True	AATAAA	-18	NA	5168326	5157773	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167498_5168149
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045744	chr19	-	2907	16	FSM	ENSMUSG00000024862.17	ENSMUST00000116563.8	3169	16	262	0	0	0	multi-exon	FALSE	canonical	3	42	junction_15	16.0036107036992	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTGTTTTGAGGAGT	NA	False	NA	-1	True	AATAAA	-18	NA	5168326	5157773	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167461_5168149
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045759	chr19	-	3266	21	FSM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	-24	-20	-24	20	multi-exon	TRUE	canonical	3	1448	junction_15	340.757138589935	2651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTAGTGTGTGTGTGTG	3842	False	NA	-5	True	AATAAA	-38	NA	5345507	5323939	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045776	chr19	-	3826	20	NIC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	23	0	intron_retention	FALSE	canonical	3	1448	junction_14	347.691994431407	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3889	False	NA	-25	True	AATAAA	-18	NA	5345460	5323959	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045812	chr19	-	784	3	FSM	ENSMUSG00000024844.16	ENSMUST00000170010.3	758	3	-20	-6	-20	3	multi-exon	FALSE	canonical	3	1351	junction_2	2345.5	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTCTGTGTCAGAGAGC	8966	False	NA	-3	True	AATAAA	-20	NA	5416411	5414662	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_5415187_5415845_5415985_5416290
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045845	chr19	-	2595	20	FSM	ENSMUSG00000039148.6	ENSMUST00000044207.5	5091	20	-37	2533	-37	3	multi-exon	FALSE	canonical	3	368	junction_1	46.7672968579718	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTGTGCTGCTGTCTAA	9003	False	NA	-5	True	AATAAA	-22	NA	5438768	5430083	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_5430164_5430247_5430370_5430465_5430556_5431008_5431145_5431237_5431329_5431693_5431782_5431988_5432100_5432213_5432388_5432742_5432886_5432967_5433102_5433182_5433308_5433647_5433855_5433962_5434106_5434191_5434292_5434397_5434476_5434645_5434752_5434850_5434978_5435490_5435547_5435839_5435898_5438342
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045849	chr19	-	2540	20	NNC	ENSMUSG00000039148.6	novel	5091	20	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	109.406760920795	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTTGTGCTGCTGTC	9061	False	NA	-8	True	AATAAA	-19	NA	5438710	5430086	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_5430164_5430247_5430370_5430465_5430556_5431008_5431145_5431237_5431329_5431693_5431782_5431988_5432100_5432213_5432388_5432742_5432886_5432967_5433102_5433176_5433308_5433647_5433855_5433962_5434106_5434191_5434292_5434397_5434476_5434645_5434752_5434850_5434978_5435490_5435547_5435839_5435898_5438342
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045871	chr19	+	1532	2	FSM	ENSMUSG00000047423.11	ENSMUST00000159759.3	1528	2	0	-4	0	4	multi-exon	FALSE	canonical	3	164	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTCCTGATGGTTATCT	247	False	NA	38	True	AATAAA	-39	NA	5475171	5477345	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_5475337_5475978
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045874	chr19	-	1029	1	FSM	ENSMUSG00000095098.3	ENSMUST00000179549.3	4715	1	320	3366	-70	-3361	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAGCCTGGCCAGCTT	5261	False	NA	-7	True	AATAAA	-17	NA	5507602	5506573	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_5506600_5507600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045877	chr19	+	1224	10	FSM	ENSMUSG00000024911.8	ENSMUST00000225141.2	1209	10	-9	-6	-8	6	multi-exon	FALSE	canonical	3	126	junction_5	12.1837779216647	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTTCCAGGTTGAAG	NA	False	NA	23	True	AATAAA	-23	NA	5510634	5515085	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513333_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045887	chr19	+	1544	11	FSM	ENSMUSG00000024909.16	ENSMUST00000165485.8	1557	11	13	0	-6	0	multi-exon	FALSE	canonical	3	63	junction_1	7.8873316146844	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	False	NA	10	True	AATAAA	-15	NA	5524728	5531881	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_5524803_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045939	chr19	-	1906	12	FSM	ENSMUSG00000024926.11	ENSMUST00000235701.2	1905	12	0	-1	0	0	multi-exon	FALSE	canonical	3	222	junction_9	58.4797768251612	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTATCAGGAGTTCTTAC	3629	False	NA	-5	True	AATAAA	-16	NA	5660076	5653043	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045989	chr19	+	3706	12	NNC	ENSMUSG00000004054.10	novel	2885	11	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	23.4485545555329	31	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAATGTCACCTTTCTTGG	NA	False	NA	10	True	AATAAA	-22	NA	5738763	5752893	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_+_5738802_5739504_5739541_5739716_5741017_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000045998	chr19	+	2455	11	NIC	ENSMUSG00000004054.10	novel	441	3	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	27.36439292219	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAATGTCACCTTTCTTGG	NA	False	NA	10	True	AATAAA	-22	NA	5738771	5752893	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_5738859_5739504_5739541_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046010	chr19	-	2547	5	FSM	ENSMUSG00000118125.2	ENSMUST00000160852.8	2532	5	-14	-1	-14	1	multi-exon	FALSE	canonical	3	87	junction_1	171.430744033852	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGATTGCCTGGTTAATT	NA	False	NA	-1	True	AATAAA	-17	NA	5781755	5778114	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_5778897_5779264_5780741_5781268_5781354_5781471_5781624_5781703
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046045	chr19	-	3180	1	FSM	ENSMUSG00002076852.1	ENSMUST00020181828.1	152	1	-1043	-1985	-1043	1985	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAATTGTCATGGCTGTTA	9999	False	NA	-6	True	AATAAA	-21	NA	5895508	5892328	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_5892300_5895500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046051	chr19	-	2968	11	FSM	ENSMUSG00000024816.13	ENSMUST00000025728.13	4504	11	0	1536	0	-1536	multi-exon	FALSE	canonical	3	167	junction_1	18.6118241986109	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAATGGTTATAATATG	4335	False	NA	-21	True	AATAAA	-18	NA	5925302	5901265	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923365_5924737_5924823_5925118
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046077	chr19	-	2449	18	FSM	ENSMUSG00000024833.16	ENSMUST00000025752.15	2421	18	-28	0	-28	0	multi-exon	FALSE	canonical	3	334	junction_17	37.0964328301216	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAATCTTTTTTTTTTCC	1598	False	NA	0	True	AATAAA	-21	NA	6014258	5990569	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046101	chr19	-	2393	18	FSM	ENSMUSG00000024833.16	ENSMUST00000165143.3	2391	18	27	-29	-6	29	multi-exon	FALSE	canonical	3	24	junction_1	92.2413338358681	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTGACTATGTTGCACC	1653	False	NA	NA	False	NA	NA	NA	6014203	5991105	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_5991581_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046174	chr19	-	2492	10	NNC	ENSMUSG00000024797.15	novel	2675	10	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	48.3584864307863	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTTGCCTGCAGGGG	1023	False	NA	-4	True	AATAAA	-17	NA	6127225	6118020	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_6118406_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6120104_6120468_6121187_6121293_6121516_6121591_6121739_6126392_6126523_6126980
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046179	chr19	-	857	2	FSM	ENSMUSG00000024797.15	ENSMUST00000160590.2	840	2	-17	0	-14	0	multi-exon	FALSE	canonical	3	178	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGGTAACTTTTGTTTC	1001	False	NA	1	True	ATTAAA	-20	NA	6127247	6125932	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_6126523_6126980
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046194	chr19	+	3279	6	FSM	ENSMUSG00000024791.11	ENSMUST00000025704.3	2024	6	18	-1273	18	1273	multi-exon	FALSE	canonical	3	368	junction_5	42.0218990527558	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCTTTACATGGAGGTT	NA	False	NA	NA	False	NA	NA	NA	6135030	6143080	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6140080_6140555_6140677
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046204	chr19	-	1599	8	FSM	ENSMUSG00000024787.15	ENSMUST00000025702.14	1635	8	36	0	36	0	multi-exon	FALSE	canonical	3	79	junction_5	6.49018096662888	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGTCCATTTGCTTATTA	NA	False	NA	1	True	NA	NA	NA	6178298	6169428	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_6169985_6170515_6170774_6171408_6171553_6171812_6171961_6172069_6172186_6173859_6173981_6174182_6174219_6178078
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046217	chr19	-	2728	14	FSM	ENSMUSG00000024777.11	ENSMUST00000025695.10	2742	14	14	0	14	0	multi-exon	TRUE	canonical	3	82	junction_11	13.4199357135648	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGCTTGCTTTATTGAG	NA	False	NA	0	True	AATAAA	-14	NA	6285888	6277794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_6278562_6278971_6279074_6279251_6279380_6280185_6280306_6280415_6280467_6280531_6280586_6280936_6281046_6281145_6281206_6282299_6282431_6282557_6282651_6282796_6282899_6283806_6284004_6284662_6285130_6285541
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046231	chr19	+	3363	5	FSM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	-10	0	-10	0	multi-exon	FALSE	canonical	3	357	junction_1	38.2687862363049	252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCATGCTCCCTTGTCTTT	NA	False	NA	16	True	ATTAAA	-24	NA	6326744	6350126	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_6327409_6331247_6331346_6344243_6344657_6347562_6347728_6348103
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046269	chr19	+	3540	13	FSM	ENSMUSG00000024949.18	ENSMUST00000131252.8	4353	13	-14	827	-14	0	multi-exon	FALSE	canonical	3	714	junction_12	157.964724437663	309	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTTTCTTTTCTTTTAAA	588	False	NA	22	True	AATAAA	-22	NA	6413705	6427233	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6425687
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046324	chr19	+	2858	20	FSM	ENSMUSG00000032648.15	ENSMUST00000035269.15	2874	20	16	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	7.04005162408672	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTCTCTGTTGCAAAATA	NA	False	NA	14	True	AATAAA	-24	NA	6434444	6448489	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_6434752_6435714_6435817_6435895_6435975_6436053_6436158_6436403_6436536_6438092_6438205_6438296_6438380_6438766_6438911_6439189_6439283_6439485_6439633_6439802_6439967_6440360_6440476_6440969_6441072_6441362_6441511_6442708_6442768_6442877_6443020_6443745_6443954_6447607_6447743_6447895_6447963_6448074
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046341	chr19	-	225	1	Intergenic	novelGene_195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACGACCAACATGTCAGAT	NA	False	NA	NA	False	NA	NA	NA	6730054	6729829	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr19_-_6729800_6730100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046362	chr19	-	2229	7	NNC	ENSMUSG00000024955.16	novel	2274	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	35.7289176376161	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGGTGGTCGGTGAGTCAC	9679	False	NA	0	True	AATATA	-17	NA	6899182	6888344	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_6889379_6889722_6889993_6890083_6890252_6891187_6891317_6891465_6891564_6897430_6897768_6898989
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046388	chr19	-	4256	31	FSM	ENSMUSG00000024960.10	ENSMUST00000025912.10	4257	31	4	-3	4	3	multi-exon	FALSE	canonical	3	577	junction_24	50.7714377272191	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACAGTGTAGTTTGGA	4315	False	NA	-5	True	AATAAA	-19	NA	6947178	6931077	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_6931668_6931748_6931836_6932072_6932131_6932208_6932299_6932391_6932469_6932574_6932726_6933081_6933275_6933390_6933427_6933514_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6946914
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046396	chr19	-	4250	32	NNC	ENSMUSG00000024960.10	novel	4257	31	NA	NA	-499	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_31	170.051195082573	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTACAGTGTAGTTT	NA	False	NA	-8	True	AATAAA	-16	NA	6952218	6931080	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_6931668_6931748_6931836_6932072_6932131_6932208_6932299_6932391_6932469_6932574_6932726_6933081_6933275_6933390_6933427_6933514_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6946752_6946882_6952086
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046428	chr19	-	1254	7	FSM	ENSMUSG00000024962.14	ENSMUST00000130048.8	1158	7	-95	-1	-73	1	multi-exon	FALSE	canonical	3	113	junction_2	60.459352736639	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGCTTCTGTCATTGTT	4685	False	NA	0	True	GATAAA	-18	NA	6965092	6959839	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_6960236_6962728_6962864_6963172_6963209_6963388_6963463_6963657_6963855_6964141_6964185_6964719
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046471	chr19	-	2168	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	-59	-1	-59	1	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	661	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGGTCTCCAGTGACTTTC	3704	False	NA	-7	True	AATAAA	-30	NA	7017394	6998068	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046515	chr19	+	2355	13	NIC	ENSMUSG00000024968.15	novel	2823	12	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	300.802676184904	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCTTCCATGTGTGCTG	NA	False	NA	22	True	AATAAA	-17	NA	7244685	7252590	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_7244790_7246215_7246454_7247129_7247187_7247465_7247547_7247918_7247972_7248062_7248225_7248334_7248460_7248557_7248628_7248703_7248920_7250464_7250543_7251197_7251256_7251384_7251615_7251707
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046519	chr19	+	2334	13	NNC	ENSMUSG00000024968.15	novel	2823	12	NA	NA	44	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	407.506126402482	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCTTCCATGTGTGCTG	NA	False	NA	22	True	AATAAA	-17	NA	7244733	7252590	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_+_7244790_7246215_7246454_7247102_7247187_7247465_7247547_7247918_7247972_7248062_7248225_7248334_7248460_7248557_7248628_7248703_7248920_7250464_7250543_7251197_7251256_7251384_7251615_7251707
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046541	chr19	+	2167	1	NIC	ENSMUSG00000024968.15	novel	2823	12	NA	NA	0	301	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGAGCTGTTAGTCCCA	NA	False	NA	NA	False	AAAACA	-13	NA	7245643	7247810	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_7245600_7247800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046571	chr19	-	2791	19	NNC	ENSMUSG00000024969.16	novel	2867	19	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	105.935646083418	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCGGCCACCTTTCCT	3888	False	NA	NA	False	AAGAAA	-39	NA	7319197	7254097	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_7254816_7255406_7255452_7258362_7258621_7259158_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532_7318620_7319131
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046579	chr19	-	3325	19	NNC	ENSMUSG00000024969.16	novel	2660	19	NA	NA	-8	0	intron_retention	FALSE	canonical	0	0	junction_4	113.063799863202	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCGGCCACCTTTCCT	3893	False	NA	NA	False	AAGAAA	-39	NA	7319192	7254097	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_7254816_7255406_7255452_7257350_7257378_7258362_7258621_7259158_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046586	chr19	-	2733	18	NNC	ENSMUSG00000024969.16	novel	3018	18	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	83.0892712064523	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCGGCCACCTTTCCT	3859	False	NA	NA	False	AAGAAA	-39	NA	7319226	7254097	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_7254816_7255406_7255452_7258362_7258621_7259158_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7319131
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046587	chr19	-	3298	18	NNC	ENSMUSG00000024969.16	novel	2874	18	NA	NA	-8	0	intron_retention	FALSE	canonical	0	0	junction_3	87.3120720397554	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCGGCCACCTTTCCT	3893	False	NA	NA	False	AAGAAA	-39	NA	7319192	7254097	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_7254816_7255406_7255452_7258362_7258621_7259158_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046617	chr19	-	1890	6	NNC	ENSMUSG00000024970.6	novel	3152	6	NA	NA	1	0	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_1	121.287097417656	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGTGGGCTATCATT	NA	False	NA	NA	False	AATAAA	-21	NA	7360358	7335050	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_7335815_7351021_7351220_7351386_7351513_7351660_7351811_7351885_7352216_7360036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046622	chr19	-	2008	6	FSM	ENSMUSG00000024970.6	ENSMUST00000025924.4	3152	6	-79	1223	-79	0	multi-exon	FALSE	canonical	3	309	junction_2	10.2293694820355	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGTGGGCTATCATT	NA	False	NA	NA	False	AATAAA	-21	NA	7360438	7335050	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_7335853_7351021_7351220_7351386_7351513_7351660_7351811_7351885_7352216_7360036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046623	chr19	-	2003	5	NIC	ENSMUSG00000024970.6	novel	3152	6	NA	NA	1	0	intron_retention	FALSE	canonical	3	309	junction_2	11.4345966260293	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGTGGGCTATCATT	NA	False	NA	NA	False	AATAAA	-21	NA	7360358	7335050	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_-_7335853_7351021_7351220_7351386_7351513_7351660_7352216_7360036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046645	chr19	-	2844	7	FSM	ENSMUSG00000024758.16	ENSMUST00000088169.7	2762	7	-76	-6	3	6	multi-exon	FALSE	canonical	3	635	junction_1	35.2735343029618	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCAACTTTATTCTTTG	8963	False	NA	-12	True	AATAAA	-23	NA	7460643	7403259	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7460303
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046664	chr19	-	1448	8	FSM	ENSMUSG00000010095.14	ENSMUST00000206598.2	1393	8	-33	-22	-33	22	multi-exon	FALSE	canonical	3	2940	junction_7	103.964868477534	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGACTTTCATCCTTCCT	NA	False	NA	1	True	AATAAA	-24	NA	8690382	8684928	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046667	chr19	-	2668	8	NIC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	4	22	intron_retention	FALSE	canonical	3	2610	junction_7	205.571676759505	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGACTTTCATCCTTCCT	NA	False	NA	1	True	AATAAA	-24	NA	8691239	8684928	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8690268_8690705
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046673	chr19	-	1863	9	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	4	20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1031.99464024771	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGACTTTCATCCTTC	NA	False	NA	-1	True	AATAAA	-22	NA	8691239	8684930	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686595_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046675	chr19	-	2080	10	FSM	ENSMUSG00000010095.14	ENSMUST00000170157.8	2813	10	48	685	48	20	multi-exon	FALSE	canonical	3	190	junction_9	923.220423635268	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGACTTTCATCCTTC	9077	False	NA	-1	True	AATAAA	-22	NA	8700685	8684930	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691117_8700347
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046689	chr19	-	1864	9	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	7	18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1031.99464024771	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTGTGACTTTCATCCT	NA	False	NA	-3	True	AATAAA	-20	NA	8691236	8684932	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686589_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046713	chr19	+	1249	11	FSM	ENSMUSG00000042729.12	ENSMUST00000049424.11	1204	11	-41	-4	-29	4	multi-exon	FALSE	canonical	3	1012	junction_8	78.6635875103596	461	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCTTTTGTGATGGGAGA	934	False	NA	32	True	AATAAA	-25	NA	8713161	8717992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046722	chr19	+	1816	11	FSM	ENSMUSG00000010110.18	ENSMUST00000176381.8	2251	11	8	427	8	0	multi-exon	FALSE	canonical	3	140	junction_1	18.8417090519942	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6557	False	NA	12	True	NA	NA	NA	8718784	8733006	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046726	chr19	+	2120	10	FSM	ENSMUSG00000010110.18	ENSMUST00000073430.14	2112	10	-8	0	-8	0	multi-exon	FALSE	canonical	3	190	junction_5	5.51764845241562	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6931	False	NA	12	True	NA	NA	NA	8719158	8733006	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046737	chr19	+	2341	21	FSM	ENSMUSG00000010097.16	ENSMUST00000010241.14	2326	21	-14	-1	-14	1	multi-exon	FALSE	canonical	3	621	junction_4	71.7857924661976	289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGGCTTGTTTCCCTCAA	8555	False	NA	48	True	GATAAA	-27	NA	8734422	8748287	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8742396_8744160_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046751	chr19	+	759	2	FSM	ENSMUSG00000117924.2	ENSMUST00000010248.4	748	2	-7	-4	-7	4	multi-exon	FALSE	canonical	3	838	junction_1	0	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCCTCTCTCTCATCT	6512	False	NA	NA	False	AATAAA	-42	NA	8748352	8749843	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_8748680_8749411
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046788	chr19	+	196	1	Intergenic	novelGene_196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGAGACACAGACAAAAACA	76	False	NA	NA	False	AAAAAG	-4	NA	8756809	8757005	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr19_+_8756800_8757000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046834	chr19	+	1117	10	FSM	ENSMUSG00000071655.13	ENSMUST00000166407.9	1033	10	-74	-10	-11	2	multi-exon	FALSE	canonical	3	339	junction_1	323.787653323045	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGGCTCCTTCCAGAAC	5838	False	NA	35	True	AATAAA	-23	NA	8848848	8853030	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_8848950_8849034_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046850	chr19	+	2547	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	8	-1749	8	1749	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTTTGTTTTTTTTCGA	NA	False	NA	18	True	NA	NA	NA	8866224	8869994	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046857	chr19	+	720	5	NNC	ENSMUSG00000071653.10	novel	500	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	1620.00408950101	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTGTGGGATGAAGTGCAG	NA	False	NA	27	True	AATAAA	-16	NA	8866257	8868105	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_+_8866329_8866487_8866613_8866996_8867092_8867366_8867465_8867774
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046858	chr19	+	2435	5	NNC	ENSMUSG00000071653.10	novel	500	5	NA	NA	-5	1746	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1396.00770055183	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTTTTGTTTTTTTT	NA	False	NA	15	True	NA	NA	NA	8866257	8869991	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774_8869104_8869179
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046883	chr19	+	3845	24	FSM	ENSMUSG00000071650.7	ENSMUST00000235274.2	3788	24	-57	0	-21	0	multi-exon	FALSE	canonical	3	708	junction_5	142.157557894544	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	1842	False	NA	-56	True	GATAAA	-42	NA	8875413	8894036	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046895	chr19	+	3873	25	NNC	ENSMUSG00000071650.7	novel	3860	25	NA	NA	-15	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	349.033305379141	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	1878	False	NA	-62	True	GATAAA	-36	NA	8875449	8894030	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8885214_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892873_8892988
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046913	chr19	+	3453	22	FSM	ENSMUSG00000071647.6	ENSMUST00000096241.6	3322	22	-131	0	-131	0	multi-exon	FALSE	canonical	3	31	junction_2	12.0183155765295	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGTGCTTTTGTGCG	1784	False	NA	6	True	AATAAA	-14	NA	8906784	8918946	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_8907317_8908162_8908335_8908407_8908669_8908753_8908868_8910605_8910674_8910786_8910911_8911133_8911305_8911450_8911521_8911605_8911717_8912314_8912411_8913667_8913824_8913982_8914125_8914492_8914645_8914725_8914852_8914926_8915059_8915825_8915894_8916391_8916481_8916551_8916650_8916780_8916869_8917942_8918042_8918266_8918398_8918493
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046960	chr19	+	2765	9	FSM	ENSMUSG00000071645.7	ENSMUST00000096239.7	2753	9	-14	2	-14	-2	multi-exon	FALSE	canonical	3	129	junction_7	18.3234822018087	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTAATGTTCTTTTGCAT	1343	False	NA	9	True	AATAAA	-24	NA	8931196	8943572	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707_8940187_8941383_8941494_8941627_8941739_8941924_8942018_8942397
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046970	chr19	+	1450	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	117	297	117	-297	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	960	False	NA	13	True	ATTAAA	-18	NA	8944521	8955546	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000046987	chr19	+	1274	1	FSM	ENSMUSG00000067608.6	ENSMUST00000088040.6	781	1	-142	-351	-142	351	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCAAGTGACCATAGGTAT	NA	False	NA	NA	False	AATAAA	-37	NA	9260601	9261875	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_9260600_9261900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047000	chr19	-	3104	18	NNC	ENSMUSG00000024660.10	novel	3236	18	NA	NA	-15	-60	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	113.37551287829	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAATGACTTTTAGTTTC	NA	False	NA	-26	True	AATAAA	-18	NA	9876868	9849765	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855814_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047008	chr19	+	869	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	55	5	-3	0	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	4924	False	NA	18	True	AATAAA	-16	NA	9960064	9962457	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047012	chr19	+	2390	1	NIC	ENSMUSG00000024661.8	novel	929	4	NA	NA	0	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	4927	False	NA	18	True	AATAAA	-16	NA	9960067	9962457	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_9960100_9962500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047021	chr19	+	1975	9	FSM	ENSMUSG00000024663.21	ENSMUST00000117641.8	2004	9	34	-5	34	-1	multi-exon	FALSE	canonical	3	22	junction_4	8.51377560192891	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGCGGCAGTGGCCTTCA	4002	False	NA	7	True	AATAAA	-22	NA	9995591	10012824	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047028	chr19	-	3245	12	FSM	ENSMUSG00000024665.9	ENSMUST00000025567.9	3150	12	-92	-3	-92	3	multi-exon	TRUE	canonical	3	359	junction_1	25.8738196920081	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTAGTTCAGCAAGATC	9779	False	NA	-1	True	AATAAA	-28	NA	10079202	10040125	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878_10043977_10047635_10047713_10047927_10047989_10059928_10060055_10066065_10066168_10066271_10066470_10069104_10069216_10078586
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047040	chr19	+	3429	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	31	0	-20	0	multi-exon	TRUE	canonical	3	652	junction_7	60.0436480355873	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	18	True	AATAAA	-19	NA	10160282	10174238	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047043	chr19	+	3423	12	NNC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	231.993480957141	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	18	True	AATAAA	-19	NA	10160292	10174238	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163848_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047050	chr19	-	2226	2	FSM	ENSMUSG00000024742.16	ENSMUST00000025651.6	2341	2	121	-6	-4	0	multi-exon	FALSE	canonical	3	832	junction_1	0	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTCTGAATGTTTGAAAA	2151	False	NA	NA	False	AATAAA	-20	NA	10181311	10176495	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_10178462_10181051
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047053	chr19	-	2110	2	FSM	ENSMUSG00000024742.16	ENSMUST00000116542.9	2100	2	-4	-6	-4	0	multi-exon	FALSE	canonical	3	443	junction_1	0	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTCTGAATGTTTGAAAA	2151	False	NA	NA	False	AATAAA	-20	NA	10181311	10176495	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_10178462_10181167
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047107	chr19	+	2849	8	FSM	ENSMUSG00000034445.9	ENSMUST00000237814.2	3130	8	282	-1	0	1	multi-exon	FALSE	canonical	3	46	junction_1	19.4768308196049	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCTCTTTTGTTCAGAC	NA	False	NA	15	True	ATTAAA	-18	NA	10554817	10567194	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047116	chr19	-	2327	18	FSM	ENSMUSG00000034371.10	ENSMUST00000236607.2	2516	18	190	-1	-32	0	multi-exon	FALSE	canonical	3	13	junction_17	13.858404068355	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTTTGTCCCTGTTTACA	9709	False	NA	-23	True	AATAAA	-17	NA	10582828	10569560	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582772
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047152	chr19	+	2137	16	FSM	ENSMUSG00000024735.14	ENSMUST00000025642.14	2134	16	0	-3	0	3	multi-exon	FALSE	canonical	3	125	junction_6	13.7346277707115	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGCTTCTTGTGTCTGTCT	NA	False	NA	18	True	ATTAAA	-24	NA	10872594	10882899	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047159	chr19	+	2181	16	FSM	ENSMUSG00000024735.14	ENSMUST00000179297.3	6035	16	-173	4027	10	0	multi-exon	FALSE	canonical	3	14	junction_3	36.1106940146852	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10872604	10882896	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876289_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047161	chr19	+	2120	16	NNC	ENSMUSG00000024735.14	novel	2134	16	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	39.0238673406701	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10872605	10882896	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880657_10880826_10881001_10881108_10882398
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047163	chr19	+	2120	16	NNC	ENSMUSG00000024735.14	novel	2134	16	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	39.3715068997309	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10872605	10882896	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877760_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047215	chr19	+	4125	20	FSM	ENSMUSG00000046139.9	ENSMUST00000238190.2	3158	20	0	-967	0	-121	multi-exon	FALSE	canonical	3	28	junction_5	81.8323060642279	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCTTTATACCTTTCT	NA	False	NA	7	True	AATAAA	-21	NA	11889806	11922334	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_11889942_11891711_11891824_11897541_11897760_11898168_11898250_11898732_11898928_11899284_11899359_11899830_11899933_11900750_11900841_11901164_11901383_11902500_11902591_11907238_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047230	chr19	-	2156	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	17	444	17	5	multi-exon	TRUE	canonical	3	2829	junction_2	225.154079188008	1194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGTGAATTATTCTGC	NA	False	NA	-9	True	ATTAAA	-25	NA	15902406	15882485	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047246	chr19	-	2576	15	FSM	ENSMUSG00000041491.9	ENSMUST00000047704.8	2548	15	-24	-4	-24	3	multi-exon	FALSE	canonical	3	141	junction_1	15.9123876785558	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTGAGTGATAAAATACAG	151	False	NA	NA	False	AATAAA	-20	NA	15962377	15933133	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_15933768_15936895_15937065_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15951832_15952251_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047270	chr19	+	2482	4	FSM	ENSMUSG00000024712.10	ENSMUST00000025617.4	2482	4	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_3	47.0744091837593	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAATCCTGTATCTGTTT	1324	False	NA	19	True	AATAAA	-34	NA	17371406	17378713	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_17371757_17372561_17372714_17375941_17376045_17376836
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047321	chr19	+	5229	2	Intergenic	novelGene_197	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3428	junction_1	0	434	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAGTAAAGGGGTATTTA	1175	False	NA	NA	False	NA	NA	NA	22699833	22705276	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr19_+_22700550_22700763
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047328	chr19	+	5220	2	Intergenic	novelGene_198	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAGCTGAGTAAAGGGGT	1177	False	NA	NA	False	NA	NA	NA	22699835	22705271	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr19_+_22700543_22700758
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047333	chr19	+	5175	3	Intergenic	novelGene_199	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	120	junction_2	1654	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAGCTGAGTAAAGGGGT	1177	False	NA	NA	False	NA	NA	NA	22699835	22705271	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr19_+_22700550_22700763_22704734_22704780
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047344	chr19	-	1058	1	Intergenic	novelGene_200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTACTCTCCGACTATCT	NA	False	NA	NA	False	NA	NA	NA	22705271	22704213	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr19_-_22704200_22705300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047346	chr19	+	895	2	Fusion	ENSMUSG00000033863.3_ENSMUSG00000044387.6	novel	414	2	NA	NA	-49	2	multi-exon	FALSE	canonical	3	42	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACCCTCCATAGCACAGC	NA	False	NA	NA	False	NA	NA	NA	23112214	23142837	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr19_+_23112319_23142046
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047352	chr19	+	3319	2	FSM	ENSMUSG00000033863.3	ENSMUST00000036884.3	4486	2	-453	1620	-453	1043	multi-exon	FALSE	canonical	3	482	junction_1	0	1367	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATTTGAGGGGAGTCAG	NA	False	NA	NA	False	NA	NA	NA	23118136	23143878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_23119624_23142046
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047362	chr19	+	932	1	FSM	ENSMUSG00000051255.7	ENSMUST00000056396.7	633	1	-27	-272	-27	272	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCGGATCAGAATGCTCAC	NA	False	NA	NA	False	NA	NA	NA	23653184	23654116	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_23653200_23654100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047365	chr19	+	854	2	Genic_Genomic	ENSMUSG00000051255.7	novel	633	1	NA	NA	-18	272	multi-exon	FALSE	canonical	3	409	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCGGATCAGAATGCTCAC	NA	False	NA	NA	False	NA	NA	NA	23653193	23654116	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr19_+_23653644_23653712
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047374	chr19	-	4763	24	NNC	ENSMUSG00000024812.12	novel	4920	24	NA	NA	-16	9	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_23	82.6461699898347	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTATGAATGTTTTTC	NA	False	NA	NA	False	ATTAAA	-25	NA	24202410	24071859	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218_24108838_24109969_24110073_24112213_24112339_24116142_24116197_24171072_24171194_24202210
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047390	chr19	-	2962	15	FSM	ENSMUSG00000024867.15	ENSMUST00000025800.15	2573	15	-389	0	-389	0	multi-exon	FALSE	canonical	3	28	junction_9	5.473498303048	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGTCATACATTGATTC	NA	False	NA	0	True	AATAAA	-16	NA	24533625	24272157	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_24272919_24281395_24281511_24323600_24323746_24327497_24327654_24332481_24332567_24335393_24335443_24335574_24335659_24337303_24337516_24356165_24356466_24359051_24359205_24367707_24367826_24374379_24374511_24416416_24416486_24420965_24421053_24533128
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047404	chr19	+	471	1	Intergenic	novelGene_201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	493	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTGAAAATCCCATGTAAA	5836	False	NA	NA	False	AATAAA	-37	NA	25010494	25010965	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr19_+_25010500_25011000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047420	chr19	+	2454	3	NIC	ENSMUSG00000042372.6	novel	2391	2	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	6	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGTTGATGTCTTTTCT	NA	False	NA	17	True	AATAAA	-13	NA	25587618	25601285	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_25587719_25587937_25588632_25599625
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047444	chr19	-	2505	18	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	26	4	at_least_one_novel_splicesite	TRUE	canonical	3	19	junction_17	358.726852935909	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACCTTTGGTTTAATGTC	NA	False	NA	-13	True	TATAAA	-14	NA	27407194	27367456	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27406767
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047484	chr19	+	676	1	FSM	ENSMUSG00000068466.7	ENSMUST00000084171.7	645	1	-125	94	-125	-94	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGAGGAGGAAGATGACG	NA	False	NA	NA	False	AAAAAG	-33	NA	29137392	29138068	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_29137400_29138100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047510	chr19	-	3837	25	NNC	ENSMUSG00000024827.11	novel	3767	25	NA	NA	-60	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	264.996380347397	911	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCATTTGATTTTACAC	NA	False	NA	-1	True	AATAAA	-22	NA	30152889	30075840	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_30076511_30077236_30077318_30078142_30078316_30080378_30080475_30088068_30088185_30091121_30091264_30092587_30092701_30093798_30093949_30095942_30096069_30102121_30102198_30109071_30109215_30110879_30110922_30111094_30111180_30111589_30111688_30113903_30113985_30114492_30114633_30116674_30116781_30120759_30120857_30122546_30122744_30123017_30123166_30124568_30124647_30128821_30128987_30135913_30136050_30151823_30151903_30152390
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047524	chr19	-	3693	24	NNC	ENSMUSG00000024827.11	novel	3767	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	361.664896229177	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGAATTTCCCATTTGATT	NA	False	NA	-7	True	AATAAA	-16	NA	30152829	30075846	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_30076511_30077236_30077318_30078142_30078316_30080378_30080475_30088068_30088185_30091121_30091264_30092587_30092701_30093798_30093949_30095942_30096069_30102121_30102198_30109071_30109215_30110879_30110922_30111094_30111180_30111589_30111688_30113903_30113985_30114492_30114633_30116674_30116781_30120759_30120857_30122546_30122744_30123017_30123166_30128821_30128987_30135913_30136050_30151823_30151903_30152390
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047557	chr19	-	3369	7	NNC	ENSMUSG00000040451.19	novel	4036	10	NA	NA	-3449	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_6	60.6538447988987	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTGGCTATTATATTGT	4127	False	NA	-4	True	AATAAA	-15	NA	32219675	32100129	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32219462
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047605	chr19	+	927	1	Antisense	novelGene_ENSMUSG00000071573.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAATGAAAAATAGGAACCA	NA	False	NA	NA	False	NA	NA	NA	33369218	33370145	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr19_+_33369200_33370100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047610	chr19	+	2031	11	FSM	ENSMUSG00000024776.19	ENSMUST00000054956.15	2024	11	-12	5	-12	-3	multi-exon	FALSE	canonical	3	23	junction_1	15.5630973780928	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTGTCCGGTTGTCACA	NA	False	NA	NA	False	AATAAA	-16	NA	34169616	34217728	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_34170032_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609_34212735_34213675_34213814_34216175_34216289_34216902_34217003_34217416
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047634	chr19	+	1854	14	NNC	ENSMUSG00000024795.12	novel	5564	32	NA	NA	0	2905	at_least_one_novel_splicesite	FALSE	canonical	3	123	junction_1	59.4778065118042	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAACATTGGAACTTAAAAT	NA	False	NA	NA	False	AATAAA	-28	NA	34899760	34917247	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_+_34899838_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047640	chr19	+	1170	11	FSM	ENSMUSG00000024800.9	ENSMUST00000025714.9	1145	11	-29	4	-14	-4	multi-exon	FALSE	canonical	3	930	junction_4	72.6416547168359	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGGATTTTTAAATTTT	NA	False	NA	NA	False	AATAAA	-22	NA	36061101	36082173	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047653	chr19	+	197	1	Intergenic	novelGene_202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTACCATCTTTTAGCTT	NA	False	NA	NA	False	NA	NA	NA	36446781	36446978	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr19_+_36446800_36447000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047667	chr19	+	1820	6	FSM	ENSMUSG00000023307.15	ENSMUST00000024078.15	1809	6	-16	5	-16	-5	multi-exon	FALSE	canonical	3	653	junction_3	49.1747902893342	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTCATAGTGTACTTTTG	NA	False	NA	20	True	ATTAAA	-28	NA	37184925	37199545	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037_37198205_37198788
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047702	chr19	+	2560	10	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-7	1	combination_of_known_junctions	FALSE	canonical	3	96	junction_2	88.367917758024	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTCTAGTATGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	38043451	38062870	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_38043530_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047738	chr19	-	923	6	FSM	ENSMUSG00000024990.14	ENSMUST00000112335.4	937	6	17	-3	17	2	multi-exon	FALSE	canonical	3	6	junction_5	4.31740662898458	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTATGAGTTGAAGACTT	5226	False	NA	-2	True	ATTAAA	-16	NA	38113259	38105074	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_38105358_38106719_38106933_38112476_38112584_38112743_38112881_38112966_38113096_38113205
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047753	chr19	+	3486	2	NIC	ENSMUSG00000044026.4	novel	3474	3	NA	NA	-189	4	combination_of_known_splicesites	FALSE	canonical	3	41	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCACGACTCGTTTCT	NA	False	NA	39	True	AATAAA	-40	NA	38384238	38394062	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_38384750_38391087
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047766	chr19	+	3097	22	FSM	ENSMUSG00000025001.12	ENSMUST00000025965.12	5868	22	0	2771	0	-2771	multi-exon	TRUE	canonical	3	1554	junction_5	143.18806117019	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCACATTATTTTTTC	NA	False	NA	17	True	AATAAA	-18	NA	38919358	38956724	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157_38932386_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953850_38953928_38956176
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047772	chr19	+	508	3	ISM	ENSMUSG00000025001.12	ENSMUST00000145051.2	689	8	-217	8377	42	-4963	5prime_fragment	TRUE	canonical	3	40	junction_1	856.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTATGTATGATTAACTA	NA	False	NA	6	True	ACTAAA	-23	NA	38919400	38923981	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr19_+_38919663_38919834_38919957_38923857
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047803	chr19	-	2478	1	FSM	ENSMUSG00000096592.2	ENSMUST00000120920.2	522	1	-697	-1259	-697	1259	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTCACTGAGGACACTTT	NA	False	NA	NA	False	AATAAA	-13	NA	40550199	40547721	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_40547700_40550200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047812	chr19	+	2834	1	FSM	ENSMUSG00000094388.2	ENSMUST00000159764.2	522	1	-684	-1628	-684	1628	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGTATCTTATTACTTA	NA	False	NA	NA	False	AATAAA	-27	NA	40610219	40613053	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_40610200_40613100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047834	chr19	+	1710	1	Intergenic	novelGene_203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCTACATACAGATGCCA	NA	False	NA	NA	False	AATAAA	-32	NA	41513702	41515412	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr19_+_41513700_41515400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047841	chr19	-	2141	1	FSM	ENSMUSG00000047604.4	ENSMUST00000059231.4	2161	1	20	0	20	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTTTGTTTTTGTTTGG	NA	False	NA	NA	False	AATAAA	-23	NA	41836551	41834410	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_41834400_41836600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047849	chr19	-	4376	34	FSM	ENSMUSG00000035049.5	ENSMUST00000038677.5	4340	34	-29	-7	-29	7	multi-exon	TRUE	canonical	3	269	junction_16	39.9184430265499	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGCTTGGCCCCTTCC	NA	False	NA	-1	True	AATAAA	-27	NA	41884641	41851282	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_41851752_41853610_41853694_41853959_41854028_41855144_41855212_41857208_41857259_41859248_41859375_41859573_41859744_41859860_41860029_41860171_41860264_41861347_41861506_41862181_41862290_41862674_41862781_41862967_41863049_41863155_41863315_41864973_41865068_41865539_41865608_41865774_41865930_41866222_41866386_41866467_41866533_41868540_41868663_41868797_41868941_41870597_41870713_41871861_41871960_41872151_41872264_41874085_41874178_41874525_41874625_41875238_41875367_41875449_41875589_41878204_41878322_41878507_41878614_41879522_41879600_41880976_41881061_41883586_41883817_41884377
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047850	chr19	-	4374	34	NNC	ENSMUSG00000035049.5	novel	4340	34	NA	NA	-29	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	73.8723118448331	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGCTTGGCCCCTTCC	NA	False	NA	-1	True	AATAAA	-27	NA	41884641	41851282	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_41851752_41853610_41853694_41853959_41854028_41855144_41855212_41857208_41857259_41859248_41859375_41859573_41859744_41859860_41860029_41860171_41860264_41861347_41861506_41862181_41862290_41862674_41862781_41862967_41863049_41863155_41863313_41864973_41865068_41865539_41865608_41865774_41865930_41866222_41866386_41866467_41866533_41868540_41868663_41868797_41868941_41870597_41870713_41871861_41871960_41872151_41872264_41874085_41874178_41874525_41874625_41875238_41875367_41875449_41875589_41878204_41878322_41878507_41878614_41879522_41879600_41880976_41881061_41883586_41883817_41884377
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047888	chr19	+	1912	11	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	3	-4	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	121.95691862293	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATGTAGCTTCTCTGTGC	4132	False	NA	14	True	AATAAA	-20	NA	41921921	41932539	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927158_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047940	chr19	+	2728	12	NIC	ENSMUSG00000018820.14	novel	5611	13	NA	NA	1	12	combination_of_known_junctions	FALSE	canonical	3	125	junction_1	17.7223769463382	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCCTAGTGCTGTTCAG	NA	False	NA	19	True	AATAAA	-26	NA	42159006	42180168	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047961	chr19	-	2123	15	FSM	ENSMUSG00000042401.9	ENSMUST00000048630.8	2618	15	-2	497	0	0	multi-exon	FALSE	canonical	3	19	junction_14	18.8128538342208	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	NA	False	NA	-17	True	AATAAA	-17	NA	42420224	42271970	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42297495_42297631_42307043_42307201_42312150_42312288_42322314_42322512_42402379_42402583_42420048
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000047988	chr19	-	2048	9	FSM	ENSMUSG00000025190.14	ENSMUST00000026196.14	2058	9	14	-4	14	4	multi-exon	FALSE	canonical	3	761	junction_5	49.6934351801121	619	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTGATCCATTCATGAG	8331	False	NA	1	True	NA	NA	NA	43513030	43488186	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048001	chr19	-	1550	4	FSM	ENSMUSG00000040414.9	ENSMUST00000046038.9	1535	4	-15	0	-15	0	multi-exon	FALSE	canonical	3	130	junction_2	77.3146529162199	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTGGGTTTGTCTT	NA	False	NA	-3	True	ATTAAA	-19	NA	43663335	43652239	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_43653083_43654210_43654268_43655353_43655583_43662914
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048010	chr19	-	2947	9	FSM	ENSMUSG00000040018.10	ENSMUST00000045562.6	4798	9	0	1851	0	-1851	multi-exon	FALSE	canonical	3	354	junction_3	36.2782217728488	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGATTTTTGTTTGGGA	NA	False	NA	1	True	AATAAA	-33	NA	43741439	43723543	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048029	chr19	-	3236	12	FSM	ENSMUSG00000025198.17	ENSMUST00000071698.13	3228	12	-7	-1	3	1	multi-exon	TRUE	canonical	3	64	junction_11	39.5783562189201	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTGTTCTATTTTCT	NA	False	NA	-1	True	AATAAA	-20	NA	44058221	44023381	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058027
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048043	chr19	-	3438	21	FSM	ENSMUSG00000025199.17	ENSMUST00000119591.2	3481	21	44	-1	36	0	multi-exon	FALSE	canonical	3	113	junction_2	45.2515193115104	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAATCTCTACTCATTT	NA	False	NA	-1	True	ATTAAA	-15	NA	44095872	44061773	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_44062980_44063869_44063970_44065701_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048044	chr19	-	3499	21	FSM	ENSMUSG00000025199.17	ENSMUST00000026217.11	3502	21	3	0	0	0	multi-exon	FALSE	canonical	3	185	junction_2	31.5901883501824	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAATCTCTACTCATTT	NA	False	NA	-1	True	ATTAAA	-15	NA	44095916	44061773	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_44062980_44063869_44063970_44065684_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048053	chr19	-	2804	14	FSM	ENSMUSG00000025200.8	ENSMUST00000026218.7	3581	14	0	777	0	2	multi-exon	FALSE	canonical	3	133	junction_12	11.4813973542901	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTTTCCACCTGGCCTC	NA	False	NA	-1	True	AATAAA	-22	NA	44124315	44097852	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117636_44117852_44119850_44119953_44120524_44120604_44121438_44121524_44124204
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048064	chr19	-	248	1	FSM	ENSMUSG00000077391.3	ENSMUST00000104203.3	146	1	2	-104	2	104	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTTCATCAAGACTTCAA	4908	False	NA	-5	True	NA	NA	NA	44102561	44102313	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_44102300_44102600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048068	chr19	-	1022	5	NNC	ENSMUSG00000057506.6	novel	885	5	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_4	525.743758878791	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTTTGGTTTTTG	984	False	NA	NA	False	ATTAAA	-18	NA	44134864	44127684	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_44128153_44130562_44130668_44131459_44131580_44134379_44134497_44134652
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048078	chr19	-	2532	12	ISM	ENSMUSG00000037578.5	ENSMUST00000042026.5	3321	15	35281	0	35281	0	3prime_fragment	FALSE	canonical	3	31	junction_9	12.7694107632134	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTTGCATTTCCTTCTG	840	False	NA	-1	True	AATAAA	-17	NA	44145600	44136075	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44142219_44142502_44142685_44142862_44143034_44143886_44144116_44144279_44144505_44145490
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048107	chr19	-	4838	6	FSM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	-6	0	-6	0	multi-exon	FALSE	canonical	3	439	junction_3	163.124001912655	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	7434	False	NA	-5	True	AATAAA	-22	NA	44396154	44382893	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048165	chr19	+	2817	5	FSM	ENSMUSG00000035342.15	ENSMUST00000178087.3	2694	5	-121	-2	-65	2	multi-exon	FALSE	canonical	3	72	junction_1	34.0954542424646	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTGACATCCATCTCT	30	False	NA	NA	False	GATAAA	-16	NA	45006529	45015543	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_45006670_45009825_45010276_45011980_45012644_45013157_45013419_45014240
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048180	chr19	+	2262	15	FSM	ENSMUSG00000025217.16	ENSMUST00000065601.13	2978	15	0	716	0	4	multi-exon	FALSE	canonical	3	261	junction_1	116.411041625118	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTTGCTTTGCCGTTA	NA	False	NA	21	True	TATAAA	-23	NA	45352189	45517736	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_45352326_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048184	chr19	-	2371	9	FSM	ENSMUSG00000025218.7	ENSMUST00000026239.7	2324	9	-47	0	-47	0	multi-exon	FALSE	canonical	3	33	junction_8	11.9973955507018	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	2	True	AATAAA	-19	NA	45549017	45540713	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_45541610_45541947_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048192	chr19	-	2693	8	NIC	ENSMUSG00000025218.7	novel	2324	9	NA	NA	-31	0	intron_retention	FALSE	canonical	3	33	junction_7	11.0176111340908	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	2	True	AATAAA	-19	NA	45549001	45540713	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_-_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048248	chr19	+	204	1	Intergenic	novelGene_204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGGTAGGGGACTGGAA	NA	False	NA	NA	False	NA	NA	NA	45918788	45918992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr19_+_45918800_45919000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048265	chr19	-	2141	11	FSM	ENSMUSG00000025223.16	ENSMUST00000152946.8	2108	11	-29	-4	-29	4	multi-exon	TRUE	canonical	3	192	junction_1	177.433255056655	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGTTCCCCTATTCCCC	6689	False	NA	-26	True	ATTAAA	-25	NA	46033682	46021027	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_46021781_46022476_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46033268
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048275	chr19	-	2296	11	FSM	ENSMUSG00000025223.16	ENSMUST00000056931.14	2295	11	0	-1	0	0	multi-exon	FALSE	canonical	3	31	junction_10	244.379806858095	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTCATGTTCCCCTATT	8088	False	NA	-30	True	ATTAAA	-21	NA	46028060	46021031	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_46021781_46022470_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46027493
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048282	chr19	-	2827	10	NIC	ENSMUSG00000025223.16	novel	2108	11	NA	NA	-23	0	intron_retention	FALSE	canonical	3	657	junction_1	53.8023359904074	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTCATGTTCCCCTATT	6695	False	NA	-30	True	ATTAAA	-21	NA	46033676	46021031	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_-_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46033268
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048315	chr19	+	2376	17	ISM	ENSMUSG00000025224.17	ENSMUST00000177406.8	2755	19	-18	2073	0	-2073	5prime_fragment	FALSE	canonical	3	63	junction_11	12.941575445053	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACATGAATCCATACACTC	9072	False	NA	NA	False	ATTAAA	-13	NA	46140968	46254552	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr19_+_46141232_46151958_46152065_46159095_46159163_46234527_46234660_46240552_46240672_46242425_46242535_46242995_46243057_46244091_46244147_46247542_46247691_46248011_46248236_46249151_46249318_46250059_46250272_46250872_46250972_46253217_46253413_46253616_46253807_46254025_46254167_46254463
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048337	chr19	-	1255	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	336.420298561116	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5829	False	NA	-2	True	AGTAAA	-19	NA	46327092	46318978	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048341	chr19	-	1107	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235485.2	1790	9	-45	728	-5	0	multi-exon	FALSE	canonical	3	133	junction_8	321.93700859019	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5817	False	NA	-2	True	AGTAAA	-19	NA	46327104	46318978	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321138_46327007
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048342	chr19	-	1041	9	FSM	ENSMUSG00000036748.17	ENSMUST00000236980.2	999	9	-36	-6	7	0	multi-exon	FALSE	canonical	3	133	junction_8	339.490035752156	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5829	False	NA	-2	True	AGTAAA	-19	NA	46327092	46318978	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46327007
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048350	chr19	-	1056	9	NIC	ENSMUSG00000036748.17	novel	1050	9	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	390	junction_8	277.077155319597	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5817	False	NA	-2	True	AGTAAA	-19	NA	46327104	46318978	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46327007
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048408	chr19	+	2154	8	NIC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	-12	2	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	79.7222218271745	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTGGGTCTGTGCCGTG	4241	False	NA	15	True	AGTAAA	-15	NA	46345361	46363693	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_46345424_46354749_46354993_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048425	chr19	-	2766	11	FSM	ENSMUSG00000025228.6	ENSMUST00000040270.6	2757	11	-9	0	-8	0	multi-exon	FALSE	canonical	3	273	junction_3	19.222122671547	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGACCTCTTTCTGT	NA	False	NA	-2	True	AATAAA	-19	NA	46384195	46365249	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048522	chr19	-	2160	10	NNC	ENSMUSG00000025050.9	novel	2159	10	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_2	147.016585945974	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAGGTGTGTTGACATA	NA	False	NA	-19	True	AATAAA	-17	NA	47039348	47022055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_-_47023125_47025676_47025760_47028482_47028582_47031204_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048538	chr19	+	3268	11	FSM	ENSMUSG00000025049.7	ENSMUST00000026027.7	3260	11	-8	0	-8	0	multi-exon	FALSE	canonical	3	160	junction_3	39.3161544406367	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTGTACAAATTGAGTA	NA	False	NA	15	True	AATAAA	-27	NA	47056176	47071918	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_47056766_47059419_47059658_47063251_47063568_47064174_47064339_47064435_47064572_47065712_47065834_47067206_47067337_47068979_47069145_47070247_47070426_47070582_47070761_47070865
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048544	chr19	-	471	5	FSM	ENSMUSG00000071528.5	ENSMUST00000237720.2	425	5	-24	-22	-11	0	multi-exon	FALSE	canonical	0	0	junction_1	2533.27548590752	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTGTCTTTATTTACA	NA	False	NA	0	True	AATAAA	-17	NA	47079097	47071902	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_47072009_47073207_47073298_47074393_47074487_47074572_47074669_47079011
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048550	chr19	+	6044	36	FSM	ENSMUSG00000025047.10	ENSMUST00000072141.4	6761	36	-2	719	-2	-105	multi-exon	FALSE	canonical	3	156	junction_7	35.2497097976186	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTGTGTGTAAAAT	NA	False	NA	26	True	NA	NA	NA	47079204	47119585	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_47079307_47081220_47081340_47082189_47082322_47083646_47083815_47085293_47085456_47086559_47086684_47087129_47087312_47089501_47089610_47091005_47091213_47092190_47092316_47092471_47092533_47093094_47093242_47094735_47094988_47095449_47095591_47095992_47096188_47096861_47097033_47097992_47098213_47099399_47099550_47100476_47100593_47101579_47102155_47102993_47103057_47105735_47105842_47107974_47108065_47108231_47108335_47108685_47108864_47112869_47112927_47113483_47113607_47114744_47114868_47115313_47115549_47115689_47115807_47116384_47116532_47116713_47116962_47117580_47117750_47118067_47118222_47118386_47118553_47119077
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048600	chr19	-	2543	21	FSM	ENSMUSG00000025027.19	ENSMUST00000183108.8	4078	21	1539	-4	-34	1	multi-exon	FALSE	canonical	3	790	junction_19	199.189727395767	894	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTGTCTGCCTCTTTC	5025	False	NA	1	True	AATAAA	-18	NA	53027106	52979609	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53026944
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048631	chr19	+	4294	15	FSM	ENSMUSG00000025026.16	ENSMUST00000237430.2	4054	15	-240	0	-22	0	multi-exon	TRUE	canonical	3	178	junction_5	22.1124214791929	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGGTATAATGGGGT	2461	False	NA	8	True	AATAAA	-17	NA	53131164	53235518	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_53131521_53205231_53205447_53215021_53215161_53219610_53219763_53220554_53220636_53221456_53221607_53222003_53222148_53222255_53222355_53223209_53223393_53225024_53225283_53226833_53226954_53227837_53227925_53230934_53231059_53232740_53232837_53233428
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048639	chr19	+	2489	6	FSM	ENSMUSG00000025025.15	ENSMUST00000111737.3	2340	6	-9	-140	-9	1	multi-exon	FALSE	canonical	3	157	junction_1	29.7859027058103	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAGTTGTGTGTTAATGTC	4405	False	NA	19	True	AATAAA	-24	NA	53317834	53361725	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_53318152_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048648	chr19	-	2010	6	FSM	ENSMUSG00000025024.8	ENSMUST00000025997.7	1948	6	-58	-4	-58	-2	multi-exon	FALSE	canonical	3	184	junction_4	26.9102211064867	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTGTTAACAAAGGGGC	NA	False	NA	-4	True	AATAAA	-21	NA	53379067	53367822	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53373028_53377733_53377854_53378846
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048654	chr19	+	2480	4	FSM	ENSMUSG00000034765.7	ENSMUST00000038287.7	2473	4	-15	8	-15	-8	multi-exon	FALSE	canonical	3	31	junction_3	7.25718035235908	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGTGCTTGATCCTGTT	NA	False	NA	71	True	NA	NA	NA	53517524	53530854	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_53518128_53522256_53522406_53525887_53526108_53529346
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048669	chr19	+	2294	12	FSM	ENSMUSG00000024975.14	ENSMUST00000025931.14	2381	12	78	9	2	0	multi-exon	FALSE	canonical	3	114	junction_5	6.73954654285478	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTTTAGTGGGAGTGCA	546	False	NA	13	True	AATAAA	-18	NA	53891807	53918282	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_53891920_53895879_53895987_53897542_53897846_53899358_53899454_53901242_53901357_53908045_53908268_53909648_53909747_53910447_53910563_53914636_53914745_53914965_53915077_53915624_53915765_53917513
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048704	chr19	-	2268	11	FSM	ENSMUSG00000024982.11	ENSMUST00000076891.7	2263	11	0	-5	0	5	multi-exon	FALSE	canonical	3	26	junction_10	157.939355450122	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAGTTTTCACCAAAAAG	7441	False	NA	-21	True	AATAAA	-24	NA	55304462	55286746	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304111
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048710	chr19	+	870	8	FSM	ENSMUSG00000024983.11	ENSMUST00000095950.3	3405	8	-56	2591	0	-2591	multi-exon	FALSE	canonical	3	70	junction_7	16.8219972606327	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCACATGAATCATTCTT	NA	False	NA	NA	False	GATAAA	-38	NA	55304726	55612402	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55612248
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048711	chr19	+	1000	2	NNC	ENSMUSG00000024983.11	novel	1244	8	NA	NA	0	-14078	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTTTCTTGTTAATGTG	NA	False	NA	NA	False	ATTAAA	-18	NA	55304726	55306992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr19_+_55304977_55306242
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048788	chr19	-	3605	19	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	-68	5215	-53	4454	5prime_fragment	FALSE	canonical	0	0	junction_14	313.078644519745	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTCTAGTTTTAAAATT	8686	False	NA	NA	False	NA	NA	NA	60779149	60754769	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr19_-_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048803	chr19	+	2355	9	NIC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	138	junction_1	88.7623230881211	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTGATGTCTTTTCATT	NA	False	NA	NA	False	ATTAAA	-21	NA	60800028	60824673	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr19_+_60800112_60803029_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048820	chr1_GL456212v1_random	+	212	1	Intergenic	novelGene_205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATCTATAAAACAGAAATGC	NA	False	NA	NA	False	NA	NA	NA	29064	29276	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr1_GL456212v1_random_+_29100_29300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048868	chr2	-	2344	9	ISM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	39	6345	-32	777	5prime_fragment	FALSE	canonical	3	947	junction_4	44.2081369772579	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTAGTATTTGTAGGTA	3981	False	NA	NA	False	NA	NA	NA	3513812	3496231	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_-_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048871	chr2	+	505	1	FSM	ENSMUSG00000082580.4	ENSMUST00000122241.2	312	1	-17	-176	-17	176	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGGAAGCAACAATCACTA	1033	False	NA	NA	False	NA	NA	NA	3551776	3552281	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_3551800_3552300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048891	chr2	+	3335	9	FSM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	-71	2055	-71	365	multi-exon	FALSE	canonical	3	382	junction_1	74.2242169039189	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGGACTTGCTTCTATT	4021	False	NA	25	True	AATAAA	-34	NA	4886303	4913313	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048909	chr2	-	202	1	Intergenic	novelGene_206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATGTATCTGGAGGATAT	NA	False	NA	NA	False	AAAACA	-4	NA	4908525	4908323	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_-_4908300_4908500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048939	chr2	-	2002	12	ISM	ENSMUSG00000026672.12	ENSMUST00000027986.5	2411	15	17738	-2	-9003	0	3prime_fragment	FALSE	canonical	3	32	junction_1	36.244349801893	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTATCTGATTTATT	NA	False	NA	0	True	AGTAAA	-17	NA	5051011	5025452	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_-_5026040_5026133_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048941	chr2	-	2541	15	FSM	ENSMUSG00000026672.12	ENSMUST00000027986.5	2411	15	-128	-2	-15	0	multi-exon	FALSE	canonical	3	32	junction_1	40.4028817925511	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTATCTGATTTATT	NA	False	NA	0	True	AGTAAA	-17	NA	5068877	5025452	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_5026040_5026133_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048955	chr2	+	2682	3	FSM	ENSMUSG00000026676.8	ENSMUST00000027988.8	2670	3	-12	0	-12	0	multi-exon	FALSE	canonical	3	30	junction_2	4	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGTGTCTTTGGATCG	4715	False	NA	NA	False	AATAAA	-42	NA	5142574	5235689	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_5143119_5146041_5146217_5233726
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048960	chr2	-	108	1	Intergenic	novelGene_207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAAGAAATTCAATGAAGC	NA	False	NA	NA	False	NA	NA	NA	5384187	5384079	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_-_5384100_5384200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048978	chr2	+	1621	9	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	-7	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	239.550490502524	168	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTGGGGGTTTTTTTGTT	1695	False	NA	NA	False	NA	NA	NA	5849822	5873554	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000048984	chr2	+	1449	10	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	-2	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	320.9755192388	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTTGGGGGTTTTTTT	1934	False	NA	NA	False	NA	NA	NA	5850061	5873551	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_5850197_5852931_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049001	chr2	-	2431	12	FSM	ENSMUSG00000025816.16	ENSMUST00000102981.10	2448	12	26	-9	26	9	multi-exon	TRUE	canonical	3	221	junction_3	37.3630833845388	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTAAGAGTATTTCTGTA	NA	False	NA	-8	True	AATAAA	-19	NA	5900217	5875788	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049014	chr2	-	1992	4	FSM	ENSMUSG00000045319.14	ENSMUST00000114942.9	4398	4	-4	2410	-4	8	multi-exon	FALSE	canonical	3	22	junction_3	5.90668171555645	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTGTTAAATTTTTATAG	NA	False	NA	NA	False	NA	NA	NA	6135026	6104827	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134852
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049039	chr2	-	1102	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	3	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1443.13855498663	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9573	False	NA	-2	True	AATAAA	-19	NA	10085252	10060840	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_10060973_10061575_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049040	chr2	-	1097	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	69	0	3	0	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9573	False	NA	-2	True	AATAAA	-19	NA	10085252	10060840	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049081	chr2	-	3601	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	-3	1	intron_retention	FALSE	canonical	3	88	junction_20	47.1269296687149	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGTACTGTCATTTTTA	NA	False	NA	1	True	ATTAAA	-38	NA	11782396	11747382	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782214
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049082	chr2	-	3573	21	FSM	ENSMUSG00000058594.16	ENSMUST00000071564.14	3567	21	-3	-3	-3	1	multi-exon	FALSE	canonical	3	183	junction_20	31.6521721213569	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGTACTGTCATTTTTA	NA	False	NA	1	True	ATTAAA	-38	NA	11782396	11747382	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049126	chr2	-	3517	8	FSM	ENSMUSG00000003418.12	ENSMUST00000003509.10	7618	8	208	3893	208	2240	multi-exon	FALSE	canonical	3	67	junction_4	4.91146098219174	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTTAAAAGTACACCAGA	NA	False	NA	NA	False	NA	NA	NA	13798667	13659724	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_13662102_13670230_13670324_13673595_13673709_13677293_13677439_13701638_13701726_13728253_13728344_13797564_13797664_13798154
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049178	chr2	+	935	8	FSM	ENSMUSG00000051154.12	ENSMUST00000061158.5	935	8	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_2	22.7909756576714	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTGGAGTTTGTGTG	60	False	NA	37	True	AATAAA	-31	NA	18677233	18681042	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_18677415_18678705_18678818_18678935_18679000_18679091_18679127_18679466_18679528_18679619_18679677_18679760_18679821_18680677
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049190	chr2	+	211	1	Intergenic	novelGene_208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCATTTGGCCTATGTTA	7533	False	NA	NA	False	TTTAAA	-11	NA	19308121	19308332	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_19308100_19308300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049212	chr2	-	1601	1	FSM	ENSMUSG00000083563.2	ENSMUST00000117219.2	1545	1	12	-68	12	68	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATATTAGTAAAATCAA	NA	False	NA	NA	False	NA	NA	NA	22479647	22478046	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_22478000_22479600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049216	chr2	+	1680	11	FSM	ENSMUSG00000026784.15	ENSMUST00000053729.14	1642	11	-38	0	-38	0	multi-exon	FALSE	canonical	3	239	junction_4	19.641792178923	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5570	False	NA	19	True	AATAAA	-21	NA	22785495	22830278	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049230	chr2	-	2931	12	FSM	ENSMUSG00000026779.7	ENSMUST00000028119.7	5590	12	126	2533	-1	-2533	multi-exon	TRUE	canonical	3	112	junction_2	17.5310821963508	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGGGAGTGAGCCGTAAG	NA	False	NA	-23	True	AATAAA	-22	NA	23045910	23008150	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_23008605_23010468_23010571_23010904_23011019_23021691_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049251	chr2	-	4725	27	FSM	ENSMUSG00000036893.18	ENSMUST00000091348.11	4615	27	-24	-86	3	14	multi-exon	TRUE	canonical	3	73	junction_26	45.6963867643122	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATTTTAGAATAAAGTGCA	9593	False	NA	NA	False	AATAAA	-39	NA	24809623	24681140	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777079_24809565
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049280	chr2	+	1641	9	FSM	ENSMUSG00000026975.11	ENSMUST00000028351.9	1666	9	25	0	2	0	multi-exon	FALSE	canonical	3	62	junction_3	22.9945645751338	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852436	24862175	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_24852638_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049283	chr2	+	1547	8	NIC	ENSMUSG00000026975.11	novel	1554	8	NA	NA	8	-1	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	37.5004761874528	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTATGTGTATGCATCTG	NA	False	NA	33	True	ATTAAA	-36	NA	24852442	24862172	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_24852638_24853034_24853169_24855568_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049293	chr2	+	536	1	FSM	ENSMUSG00000084383.2	ENSMUST00000121309.2	483	1	-34	-19	-34	19	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACCAGCACCAGGAAAAAAA	NA	False	NA	NA	False	AATAAA	-2	NA	24875961	24876497	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_24876000_24876500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049300	chr2	-	3284	2	FSM	ENSMUSG00000059555.7	ENSMUST00000081869.7	3255	2	238	-267	111	267	multi-exon	FALSE	canonical	3	13	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTTAATGGTAAATTCAC	8500	False	NA	NA	False	NA	NA	NA	25086660	25082710	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_25085938_25086603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049307	chr2	-	2587	13	FSM	ENSMUSG00000013465.20	ENSMUST00000059849.15	2637	13	50	0	50	0	multi-exon	TRUE	canonical	3	539	junction_7	54.5501807716732	598	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGAGGAATCTGTTTGTC	NA	False	NA	NA	False	AATAAA	-20	NA	25101451	25089723	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049327	chr2	-	1550	4	NNC	ENSMUSG00000036752.5	novel	1598	4	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	639.312651733615	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTCGCCTGTCCAATTC	NA	False	NA	-26	True	ATTAAA	-16	NA	25114669	25112173	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_25113376_25113941_25114057_25114135_25114245_25114545
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049330	chr2	-	1551	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	45	2	-3	-2	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTCGCCTGTCCAATTC	NA	False	NA	-26	True	ATTAAA	-16	NA	25114669	25112173	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049342	chr2	-	2193	2	FSM	ENSMUSG00000036752.5	ENSMUST00000145607.2	831	2	-3	-1359	-3	-4	multi-exon	FALSE	canonical	3	1369	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTCGCCTGTCCAAT	NA	False	NA	-28	True	ATTAAA	-14	NA	25114669	25112175	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_25114245_25114545
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049383	chr2	-	1037	2	FSM	ENSMUSG00000026966.7	ENSMUST00000141470.2	1006	2	16	-47	-6	0	multi-exon	FALSE	canonical	3	843	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGCTAGCTACCA	NA	False	NA	-6	True	AATAAA	-16	NA	25162434	25161050	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_25161594_25161940
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049386	chr2	-	857	3	FSM	ENSMUSG00000026966.7	ENSMUST00000133697.2	845	3	-12	0	-6	0	multi-exon	FALSE	canonical	3	46	junction_2	398.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGCTAGCTACCA	NA	False	NA	-6	True	AATAAA	-16	NA	25162434	25161050	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_25161594_25161940_25162141_25162320
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049418	chr2	+	3749	13	FSM	ENSMUSG00000036646.14	ENSMUST00000042390.5	3755	13	7	-1	7	1	multi-exon	FALSE	canonical	3	302	junction_8	34.4394597647653	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGCAGTGTTACTTTG	3972	False	NA	34	True	ATTAAA	-22	NA	25222747	25242225	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238239_25238582_25238704_25239181_25239380_25239462_25239595_25240373
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049428	chr2	+	3732	13	NNC	ENSMUSG00000036646.14	novel	3755	13	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_11	102.019061399764	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCAGTGTTACTTT	3984	False	NA	33	True	ATTAAA	-21	NA	25222759	25242224	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238239_25238582_25238704_25239181_25239380_25239466_25239595_25240373
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049478	chr2	+	293	1	Intergenic	novelGene_209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATCCAAACTAAAAAGCACC	2110	False	NA	NA	False	NA	NA	NA	25257785	25258078	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_25257800_25258100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049502	chr2	+	2345	9	FSM	ENSMUSG00000015095.13	ENSMUST00000015239.10	2388	9	45	-2	-21	2	multi-exon	FALSE	canonical	3	164	junction_1	35.5176012703561	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATCTAGTCTGTTTGTA	NA	False	NA	18	True	AATAAA	-18	NA	25390806	25395485	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_25390899_25391947_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049517	chr2	+	2141	8	NIC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	82.0069683450306	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	16	True	AATAAA	-16	NA	25390850	25395483	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_25390899_25391947_25392164_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049534	chr2	-	2137	11	FSM	ENSMUSG00000026942.14	ENSMUST00000114234.2	2151	11	22	-8	22	8	multi-exon	FALSE	canonical	3	14	junction_9	38.6141165896619	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTTCATCTGGCTCCT	NA	False	NA	-10	True	ATTAAA	-21	NA	25436900	25408869	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428856_25429097_25436873
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049553	chr2	-	3194	15	FSM	ENSMUSG00000015087.15	ENSMUST00000058137.9	3230	15	40	-4	4	4	multi-exon	FALSE	canonical	3	258	junction_7	28.5093074669466	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGACTCTTTTTCTG	3258	False	NA	-2	True	CATAAA	-19	NA	25498493	25473025	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_25474001_25474114_25474174_25474787_25474957_25475319_25475549_25475635_25475846_25476879_25477031_25477286_25477640_25478620_25478725_25482309_25482416_25482778_25482920_25486444_25486537_25488156_25488210_25491362_25491411_25492432_25492568_25498124
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049570	chr2	-	2097	10	FSM	ENSMUSG00000036352.17	ENSMUST00000036509.14	1852	10	-27	-218	-27	218	multi-exon	FALSE	canonical	3	686	junction_2	68.2632884002073	405	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCTTTCATGGCTACTTC	NA	False	NA	NA	False	NA	NA	NA	25911786	25888336	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_25889080_25895337_25895477_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307_25906429_25911408
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049599	chr2	-	2951	6	FSM	ENSMUSG00000026932.15	ENSMUST00000028300.6	6378	6	-14	3441	-14	2088	multi-exon	FALSE	canonical	3	39	junction_4	3.79473319220206	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGAGACTAGTGTCCCTGT	8885	False	NA	NA	False	NA	NA	NA	26012844	25948987	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_25950486_25951584_25951683_25952203_25952310_25954465_25954631_25979554_25980495_26012700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049615	chr2	-	3904	12	NNC	ENSMUSG00000036327.19	novel	2559	13	NA	NA	137	-2	intron_retention	FALSE	canonical	0	0	junction_5	38.2741308315302	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGTTTCAGTTTTTTGA	NA	False	NA	NA	False	AATAAA	-19	NA	26127400	26099138	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_26101472_26103992_26104182_26107644_26107796_26108620_26108744_26110641_26110772_26110916_26111056_26112232_26112379_26114852_26114944_26115160_26115267_26116249_26116299_26118358_26118460_26127054
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049617	chr2	-	2394	13	NNC	ENSMUSG00000036327.19	novel	2559	13	NA	NA	164	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	46.0660003569757	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGTTGTTTCAGTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	26127373	26099141	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_26099806_26101285_26101472_26103992_26104182_26107644_26107796_26108620_26108744_26110641_26110772_26110916_26111056_26112232_26112379_26114852_26114944_26115160_26115267_26116249_26116299_26118358_26118460_26127054
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049623	chr2	+	211	1	Intergenic	novelGene_210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGGTGAGGTTGTGCACA	NA	False	NA	NA	False	NA	NA	NA	26176896	26177107	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_26176900_26177100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049639	chr2	-	1117	9	ISM	ENSMUSG00000026928.15	ENSMUST00000100303.10	1947	12	2095	11	2095	0	3prime_fragment	FALSE	canonical	3	13	junction_2	6.02987354759617	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTGGTTGGATATGCA	NA	False	NA	NA	False	AATAAA	-17	NA	26247664	26242198	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_-_26242424_26242496_26242574_26242952_26243027_26244368_26244418_26244841_26244884_26245344_26245537_26246769_26246896_26247196_26247341_26247476
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049654	chr2	-	2047	9	FSM	ENSMUSG00000026927.18	ENSMUST00000028293.12	2031	9	-12	-4	0	4	multi-exon	FALSE	canonical	3	146	junction_8	70.8147892392543	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTCTTGTCATTTACTC	NA	False	NA	1	True	AATAAA	-17	NA	26279328	26272809	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26279160
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049701	chr2	+	3138	13	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	434.981704596105	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGCCCCTAGGTGTCT	647	False	NA	21	True	AATAAA	-18	NA	26279353	26287136	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_26279445_26279947_26280151_26280242_26280327_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049711	chr2	-	3345	10	FSM	ENSMUSG00000026925.17	ENSMUST00000145701.8	4147	10	-3	805	0	0	multi-exon	FALSE	canonical	3	30	junction_1	7.99228022593531	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTCTGGCCAAAGAGTG	983	False	NA	3	True	AATAAA	-23	NA	26299215	26287065	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_26287984_26288567_26288705_26289244_26289361_26289424_26289587_26290047_26290156_26290384_26290505_26290897_26291023_26291612_26291711_26292111_26292236_26297778
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049744	chr2	-	2657	5	FSM	ENSMUSG00000036160.14	ENSMUST00000047632.14	2971	5	-17	331	-17	6	multi-exon	FALSE	canonical	3	256	junction_1	26.2154534578367	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTCGTATTTGTTTGTC	NA	False	NA	0	True	NA	NA	NA	26792908	26780777	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792705
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049772	chr2	+	2508	1	FSM	ENSMUSG00000065258.3	ENSMUST00000083324.3	74	1	-458	-1976	-458	1976	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTGACTGCCTTTGGTT	NA	False	NA	-2	True	AATATA	-11	NA	26800814	26803322	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_26800800_26803300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049778	chr2	+	871	8	NNC	ENSMUSG00000062647.17	novel	914	8	NA	NA	-11	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1810.13123889977	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGACTGCCTTTGGTTATT	NA	False	NA	1	True	AATATA	-14	NA	26800817	26803325	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802176_26802377_26802458_26802682_26802814_26802999_26803070_26803176
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049796	chr2	+	1213	6	FSM	ENSMUSG00000014873.16	ENSMUST00000015017.8	1203	6	-6	-4	-6	4	multi-exon	TRUE	canonical	3	245	junction_5	33.4388995034227	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTATCATTGTTTTCT	NA	False	NA	41	True	CATAAA	-36	NA	26806372	26810199	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809738
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049805	chr2	-	2883	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	400	-2	-145	2	multi-exon	TRUE	canonical	3	778	junction_1	38.262252939418	711	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGTGGTCCTATATGGTG	NA	False	NA	0	True	AATAAA	-20	NA	26823540	26810049	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049845	chr2	+	2771	14	NNC	ENSMUSG00000026917.16	novel	2890	14	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	408.12498085758	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTCCATATAAGTTTG	NA	False	NA	33	True	AATAAA	-19	NA	27405208	27426547	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_27405293_27408719_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049866	chr2	+	2091	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	-4	-7	-4	7	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACTTTGAACCCGTACC	NA	False	NA	35	True	NA	NA	NA	28358073	28361197	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049891	chr2	+	240	1	Intergenic	novelGene_211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTAGGGAGCCGGGTGTG	NA	False	NA	NA	False	NA	NA	NA	28495262	28495502	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_28495300_28495500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049901	chr2	+	3297	20	FSM	ENSMUSG00000026806.16	ENSMUST00000113853.3	3271	20	-26	0	-26	0	multi-exon	FALSE	canonical	3	96	junction_10	16.137738156191	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGGACTCAGCAGAGAAA	NA	False	NA	18	True	AATAAA	-19	NA	28730444	28795583	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_28730873_28734849_28735107_28735209_28735286_28736005_28736050_28737452_28737524_28738297_28738363_28744782_28744828_28746206_28746249_28747131_28747197_28748747_28748868_28748999_28749107_28749880_28750090_28750727_28750905_28753727_28753788_28764142_28764194_28765701_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049907	chr2	+	1132	2	ISM	ENSMUSG00000026803.18	ENSMUST00000142786.8	5336	11	-5	21909	-1	-15889	5prime_fragment	FALSE	canonical	3	53	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTCCAAGAAAAAGAAGCACA	NA	False	NA	NA	False	NA	NA	NA	28950272	28955719	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_28950316_28954630
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049918	chr2	+	1263	8	FSM	ENSMUSG00000026799.16	ENSMUST00000028139.11	1254	8	-9	0	-9	0	multi-exon	FALSE	canonical	3	144	junction_3	14.0393034305954	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	NA	False	NA	32	True	AATAAA	-20	NA	29236821	29414805	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_29237060_29239857_29240003_29303399_29303531_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049930	chr2	-	2424	9	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	2	4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	57.2362155894325	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATGTGATGTTTTAATTA	NA	False	NA	-2	True	TATAAA	-27	NA	29677681	29666117	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_29666232_29666386_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049934	chr2	-	2517	7	FSM	ENSMUSG00000039826.14	ENSMUST00000156846.8	3930	7	-9	1422	2	4	multi-exon	FALSE	canonical	3	76	junction_4	39.677869566464	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATGTGATGTTTTAATTA	NA	False	NA	-2	True	TATAAA	-27	NA	29677681	29666117	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049969	chr2	+	2165	5	FSM	ENSMUSG00000069020.10	ENSMUST00000091142.4	2196	5	28	3	9	-3	multi-exon	FALSE	canonical	3	254	junction_1	41.2158949921023	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTTTTGTTGTTGTTGTT	NA	False	NA	11	True	AATAAA	-21	NA	29717381	29735011	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732732_29732782_29733114
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049970	chr2	+	2169	5	NNC	ENSMUSG00000069020.10	novel	2196	5	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	141.749779541275	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTTTTGTTGTTGTTGTT	NA	False	NA	11	True	AATAAA	-21	NA	29717381	29735011	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_29717448_29722703_29722775_29731413_29731496_29732732_29732786_29733114
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000049993	chr2	+	2191	17	NIC	ENSMUSG00000026790.20	novel	403	5	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	114	junction_1	291.410980189491	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	6640	False	NA	13	True	AATAAA	-17	NA	29779243	29812551	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_29779291_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050007	chr2	+	3855	21	FSM	ENSMUSG00000026790.20	ENSMUST00000113756.8	3826	21	-23	-6	-13	5	multi-exon	FALSE	canonical	3	577	junction_4	191.01803579767	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCTTTGATTTCCCTTA	7180	False	NA	19	True	AATAAA	-19	NA	29779783	29821763	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050013	chr2	+	2290	17	NIC	ENSMUSG00000026790.20	novel	2305	17	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	561	junction_4	172.1394783308	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7184	False	NA	13	True	AATAAA	-17	NA	29779787	29812551	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050023	chr2	+	3628	20	NIC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	269.578043114865	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7191	False	NA	14	True	AATAAA	-14	NA	29779794	29821758	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050041	chr2	+	2117	16	NIC	ENSMUSG00000026790.20	novel	2364	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	278.954476572791	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7203	False	NA	13	True	AATAAA	-17	NA	29779806	29812551	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050070	chr2	+	2152	16	FSM	ENSMUSG00000026790.20	ENSMUST00000113767.8	2249	16	97	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	277.041625432393	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7225	False	NA	13	True	AATAAA	-17	NA	29779828	29812551	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050098	chr2	-	1817	9	FSM	ENSMUSG00000039715.9	ENSMUST00000113711.3	1814	9	-8	5	-8	-5	multi-exon	FALSE	canonical	3	156	junction_3	11.9973955507018	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTACCTGAGAGCCCCAAG	NA	False	NA	-5	True	NA	NA	NA	29938901	29921562	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_29921985_29922084_29922243_29922413_29922647_29922761_29922930_29923285_29923396_29923817_29923976_29924774_29924885_29928186_29928439_29938695
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050104	chr2	+	2658	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	171	-5	171	5	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	4506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTCTCCTTGTTTTGTA	NA	False	NA	24	True	AATAAA	-29	NA	29952035	29962594	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050133	chr2	+	2430	1	NIC	ENSMUSG00000054766.14	novel	790	7	NA	NA	246	-5029	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGTTTATGTTGGTTC	NA	False	NA	NA	False	AAAAAG	-5	NA	29952110	29954540	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_29952100_29954500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050177	chr2	-	1243	4	FSM	ENSMUSG00000015335.17	ENSMUST00000137001.2	846	4	-10	-387	9	0	multi-exon	FALSE	canonical	3	619	junction_3	30.9443945740671	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTGGACTCTTTCC	NA	False	NA	-3	True	ATTAAA	-16	NA	29983638	29980955	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_29981846_29981999_29982078_29982416_29982554_29983500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050192	chr2	-	1831	12	FSM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	-1	-25	-1	7	multi-exon	FALSE	canonical	3	299	junction_5	38.9436974393538	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATGCTCACGTGACTGTA	NA	False	NA	-3	True	AATAAA	-40	NA	30068463	30063457	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931_30067978_30068401
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050208	chr2	-	1845	13	FSM	ENSMUSG00000039648.15	ENSMUST00000044038.10	1876	13	31	0	0	0	multi-exon	FALSE	canonical	3	91	junction_12	20.7811011899434	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTTCTCTCTTCCTTT	NA	False	NA	-3	True	AATAAA	-25	NA	30095828	30075135	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30095644
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050209	chr2	-	1710	12	ISM	ENSMUSG00000039648.15	ENSMUST00000113661.10	2057	13	4198	-7	-49	0	3prime_fragment	FALSE	canonical	3	127	junction_6	13.3880420309128	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTTCTCTCTTCCTTT	9487	False	NA	-3	True	AATAAA	-25	NA	30084173	30075135	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050210	chr2	-	2048	14	FSM	ENSMUSG00000039648.15	ENSMUST00000113663.9	2026	14	-15	-7	0	0	multi-exon	FALSE	canonical	3	14	junction_13	49.789616559678	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTTCTCTCTTCCTTT	NA	False	NA	-3	True	AATAAA	-25	NA	30095828	30075135	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30087968_30088172_30095644
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050229	chr2	-	2096	1	FSM	ENSMUSG00000075419.5	ENSMUST00000100219.5	2104	1	-14	22	-14	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTGCTGATATTTAAA	2234	False	NA	2	True	AATAAA	-22	NA	30176360	30174264	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_30174300_30176400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050295	chr2	+	2289	9	NNC	ENSMUSG00000026856.15	novel	2294	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	141.368700124886	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGAGCATACATTACT	NA	False	NA	7	True	AATAAA	-14	NA	30282427	30290539	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_30282525_30283663_30283866_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030_30287160_30287479_30287570_30289153
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050299	chr2	+	2264	7	NIC	ENSMUSG00000026856.15	novel	2294	9	NA	NA	0	-2	intron_retention	FALSE	canonical	3	287	junction_5	28.1706111636459	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGAGCATACATTA	NA	False	NA	5	True	AATAAA	-12	NA	30282427	30290537	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286543_30287030_30287160_30287479_30287570_30289153
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050301	chr2	+	2063	8	NNC	ENSMUSG00000026856.15	novel	2294	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	114.803470046397	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGAGCATACATTACT	NA	False	NA	7	True	AATAAA	-14	NA	30282427	30290539	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286467_30286543_30287030_30287160_30287479_30287570_30289153
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050303	chr2	+	2042	8	NNC	ENSMUSG00000026856.15	novel	2294	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_4	115.826048319831	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGAGCATACATTACT	NA	False	NA	7	True	AATAAA	-14	NA	30282427	30290539	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286488_30286543_30287030_30287160_30287479_30287570_30289153
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050349	chr2	+	2589	10	FSM	ENSMUSG00000039515.12	ENSMUST00000042055.10	2586	10	-2	-1	-2	0	multi-exon	TRUE	canonical	3	440	junction_4	51.3501655905104	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTGAGACATCTTTT	NA	False	NA	18	True	ATTAAA	-21	NA	30306048	30337818	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_30306345_30316410_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30327682_30328240_30328366_30329675_30329777_30333301_30333410_30336388
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050357	chr2	+	2573	10	NNC	ENSMUSG00000039515.12	novel	2586	10	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_7	163.062663104604	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTGTGAGACATCTTT	NA	False	NA	17	True	ATTAAA	-20	NA	30306069	30337817	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_30306345_30316410_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30327682_30328240_30328372_30329675_30329777_30333301_30333410_30336388
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050385	chr2	-	2122	6	FSM	ENSMUSG00000039483.11	ENSMUST00000041726.4	4147	6	2025	0	-17	0	multi-exon	FALSE	canonical	3	80	junction_2	13.3356664625357	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGTCTTTGTATGACA	1707	False	NA	-19	True	ATTAAA	-19	NA	30718320	30713108	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_30714517_30714652_30714740_30715463_30715573_30715666_30715774_30716934_30717111_30718085
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050418	chr2	+	251	1	Intergenic	novelGene_212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGGATAGCCTAAAAGTCA	NA	False	NA	NA	False	NA	NA	NA	30861762	30862013	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_30861800_30862000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050517	chr2	+	1647	9	NNC	ENSMUSG00000039356.16	novel	1686	9	NA	NA	-6	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	306.905421099074	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAATAAAGGGAGGTAGCA	NA	False	NA	NA	False	NA	NA	NA	31560739	31571337	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565915_31566679_31566749_31568462_31568640_31569862_31569992_31570501
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050553	chr2	+	202	1	Intergenic	novelGene_213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGCTCAGTGGTTAAAGG	718	False	NA	NA	False	NA	NA	NA	31966401	31966603	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_31966400_31966600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050569	chr2	+	2901	20	FSM	ENSMUSG00000039254.17	ENSMUST00000036473.16	2918	20	17	0	17	0	multi-exon	FALSE	canonical	3	126	junction_15	17.3977423950124	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATGTTATTTATTGA	NA	False	NA	17	True	AATAAA	-18	NA	32126618	32145017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_32126754_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32137548_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050579	chr2	+	2911	20	NNC	ENSMUSG00000039254.17	novel	2918	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	34.216031945643	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATGTTATTTATTGA	NA	False	NA	17	True	AATAAA	-18	NA	32126683	32145017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_32126829_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32137548_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050592	chr2	+	423	1	FSM	ENSMUSG00000066068.6	ENSMUST00000118269.2	318	1	-36	-69	-36	69	mono-exon	FALSE	NA	NA	NA	NA	NA	918	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATACTGTCTAAGACCAG	NA	False	NA	NA	False	NA	NA	NA	32161820	32162243	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_32161800_32162200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050614	chr2	-	653	2	FSM	ENSMUSG00000039195.5	ENSMUST00000048792.5	680	2	23	4	23	-4	multi-exon	FALSE	canonical	3	268	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCCCCTTCTTCTTTGTG	NA	False	NA	-1	True	ATTAAA	-17	NA	32271927	32269116	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_32269546_32271703
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050693	chr2	+	2170	6	ISM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	2809	-4	-144	0	3prime_fragment	FALSE	canonical	3	200	junction_1	44.5268458348444	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTGAGTGTATTGAAACA	NA	False	NA	17	True	AATAAA	-21	NA	32518257	32525070	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050701	chr2	+	2062	6	FSM	ENSMUSG00000026817.15	ENSMUST00000068271.5	2034	6	-22	-6	-22	0	multi-exon	FALSE	canonical	3	94	junction_1	85.0895998345274	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTGAGTGTATTGAAACA	NA	False	NA	17	True	AATAAA	-21	NA	32519493	32525070	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_32519629_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050716	chr2	+	2953	15	FSM	ENSMUSG00000026814.17	ENSMUST00000167841.8	3403	15	-95	545	-68	6	multi-exon	FALSE	canonical	3	45	junction_1	47.9038684475993	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTCTGGGTTGTATGGGA	487	False	NA	31	True	AATAAA	-19	NA	32536538	32572136	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_32537037_32547530_32547683_32559434_32559576_32561353_32561520_32562229_32562396_32562848_32562970_32563261_32563437_32563603_32563747_32567564_32567703_32567934_32567974_32568467_32568585_32568902_32569155_32570292_32570348_32571207_32571310_32571448
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050725	chr2	-	2290	15	FSM	ENSMUSG00000009566.13	ENSMUST00000028148.11	2273	15	-11	-6	-11	6	multi-exon	FALSE	canonical	3	280	junction_8	41.2442327446381	688	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCTAGCTCCCTCATCA	NA	False	NA	-7	True	AATAAA	-26	NA	32584208	32572614	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577156_32577235_32577424_32577528_32577613_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050753	chr2	-	1880	6	NIC	ENSMUSG00000009555.17	novel	1733	7	NA	NA	10	0	intron_retention	FALSE	canonical	3	1092	junction_4	84.0514128376198	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGCGTTTCCTGTGTTC	NA	False	NA	NA	False	ATTAAA	-25	NA	32602786	32597449	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_32598302_32599478_32599957_32600054_32600222_32600488_32600580_32602042_32602125_32602576
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050773	chr2	+	2611	11	FSM	ENSMUSG00000059013.13	ENSMUST00000113242.5	3107	11	-23	519	-23	-1	multi-exon	FALSE	canonical	1	2	junction_6	3.98622628559895	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCTGTCCCATGAGGCC	1522	False	NA	NA	False	AATAAA	-14	NA	32617694	32645005	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_32617819_32627530_32627571_32634762_32634892_32635846_32636302_32637033_32637159_32639164_32639698_32640963_32641080_32641525_32641698_32642625_32642738_32643000_32643208_32644407
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050790	chr2	-	3573	19	FSM	ENSMUSG00000026797.17	ENSMUST00000050000.16	3892	19	-40	359	-40	0	multi-exon	FALSE	canonical	3	22	junction_3	6.44827472379863	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGGTGCCTGGGCCCAC	5109	False	NA	-23	True	AATAAA	-15	NA	32737297	32677972	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_32679650_32686027_32686183_32688116_32688203_32690591_32690694_32691831_32691942_32692765_32692905_32696080_32696162_32696732_32696799_32698013_32698075_32699112_32699221_32701116_32701248_32702032_32702118_32704890_32705040_32707297_32707402_32708438_32708518_32709845_32709923_32711846_32711929_32713547_32713598_32737066
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050794	chr2	-	189	1	Intergenic	novelGene_214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCCAGAGGTGGTGTATA	NA	False	NA	NA	False	NA	NA	NA	32743908	32743719	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_-_32743700_32743900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050885	chr2	-	3130	17	ISM	ENSMUSG00000026867.20	ENSMUST00000028224.15	5695	26	134	22883	-2	2	5prime_fragment	FALSE	canonical	3	111	junction_9	26.715442046689	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGATGATCTGGGTCCT	5914	False	NA	NA	False	AAAAAG	-1	NA	34644439	34589879	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_-_34589919_34590774_34590863_34594177_34594543_34594647_34594726_34596031_34596152_34596709_34596845_34599123_34599265_34602176_34602351_34605216_34605343_34607327_34607395_34610579_34610741_34615054_34615245_34615390_34615526_34617227_34617315_34618342_34619187_34620474_34620693_34644277
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050903	chr2	+	2535	9	FSM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	121	1016	-4	0	multi-exon	FALSE	canonical	3	1920	junction_1	305.196632312678	774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	False	NA	18	True	ACTAAA	-14	NA	34662102	34666543	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050906	chr2	+	2617	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	-4	0	-4	0	multi-exon	FALSE	canonical	3	2314	junction_3	220.40537791135	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	False	NA	18	True	ACTAAA	-14	NA	34662102	34666543	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050915	chr2	-	1775	8	FSM	ENSMUSG00000070953.14	ENSMUST00000145903.8	2968	8	101	1092	53	569	multi-exon	FALSE	canonical	3	258	junction_7	62.9123134503371	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTGTGGTGGTGCATG	2738	False	NA	NA	False	NA	NA	NA	34689823	34668659	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689762
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050918	chr2	-	1176	8	NIC	ENSMUSG00000070953.14	novel	2968	8	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_6	140.541227882404	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGACTTTTTACAAAAG	2772	False	NA	-22	True	AATAAA	-17	NA	34689789	34669228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687382_34687446_34689762
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050919	chr2	-	1475	8	FSM	ENSMUSG00000070953.14	ENSMUST00000118108.2	1431	8	-24	-20	2	0	multi-exon	FALSE	canonical	3	85	junction_7	117.809081109381	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGACTTTTTACAAAAG	2797	False	NA	-22	True	AATAAA	-17	NA	34689764	34669228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689434
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050945	chr2	-	1931	8	FSM	ENSMUSG00000035949.16	ENSMUST00000113080.9	1923	8	-5	-3	0	0	multi-exon	FALSE	canonical	3	239	junction_7	72.0294724259395	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTTCTTTGAAATTG	9196	False	NA	-3	True	ATTAAA	-15	NA	34716247	34695349	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34713080_34715973_34716083_34716183
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050955	chr2	-	2062	10	FSM	ENSMUSG00000026869.13	ENSMUST00000028225.12	4397	10	-13	2348	-13	20	multi-exon	FALSE	canonical	3	516	junction_4	38.498997902623	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTGTCACTGTTACCA	NA	False	NA	6	True	AATAAA	-34	NA	34760987	34742093	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34756904_34757050_34760761
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050968	chr2	-	1979	10	NNC	ENSMUSG00000026869.13	novel	4397	10	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_6	175.514974212571	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGTTGGTATTCCG	NA	False	NA	-14	True	AATAAA	-14	NA	34760955	34742113	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753548_34755538_34755668_34755993_34756108_34756904_34757050_34760761
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000050981	chr2	+	1508	9	ISM	ENSMUSG00000057110.16	ENSMUST00000028235.11	2734	11	0	3206	0	-3206	5prime_fragment	FALSE	canonical	3	40	junction_6	4.59449398737228	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGTGCAGGTAAACAGAGG	NA	False	NA	NA	False	NA	NA	NA	34999503	35017533	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_34999642_35001566_35001815_35003335_35003467_35006683_35006815_35008066_35008209_35009948_35010136_35012671_35012866_35015987_35016108_35017316
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051013	chr2	+	1265	1	FSM	ENSMUSG00000075391.7	ENSMUST00000120770.2	555	1	-74	-636	-74	636	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTTATTTGTAATTATG	5814	False	NA	NA	False	TATAAA	-27	NA	35230346	35231611	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_35230300_35231600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051044	chr2	+	6298	16	NNC	ENSMUSG00000026883.18	novel	6219	15	NA	NA	-11370	0	intron_retention	FALSE	canonical	3	14	junction_1	70.1929404490857	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGACTTGCCTTTCTTCA	4416	False	NA	11	True	ATTAAA	-21	NA	35500622	35621006	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_35500706_35533899_35534004_35551503_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051055	chr2	-	835	4	FSM	ENSMUSG00000026895.8	ENSMUST00000070112.6	861	4	30	-4	30	4	multi-exon	FALSE	canonical	3	1222	junction_2	59.9184631163235	539	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTTATTATGCTCTAT	NA	False	NA	3	True	ATTAAA	-19	NA	35939388	35926333	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_35926654_35929723_35929890_35934361_35934526_35939203
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051113	chr2	-	1015	8	FSM	ENSMUSG00000026750.7	ENSMUST00000028083.6	1160	8	146	-1	-21	1	multi-exon	FALSE	canonical	3	1531	junction_5	118.933011500129	1084	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGGTTGTAATGTTGGA	2359	False	NA	-17	True	AATAAA	-25	NA	38533953	38478046	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051127	chr2	-	500	4	FSM	ENSMUSG00000062997.7	ENSMUST00000080861.6	946	4	446	0	-56	0	multi-exon	FALSE	canonical	3	27807	junction_3	5721.16085733967	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCATGTTTTACAT	NA	False	NA	-9	True	AATAAA	-19	NA	38895190	38891591	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_38891778_38894118_38894201_38894743_38894881_38895095
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051166	chr2	-	1353	8	FSM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	-11	0	-11	0	multi-exon	FALSE	canonical	3	465	junction_7	76.2190720146573	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186740	50169892	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186654
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051183	chr2	+	2930	1	Intergenic	novelGene_215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTAAAACTTTACTTGCT	NA	False	NA	NA	False	NA	NA	NA	50880813	50883743	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_50880800_50883700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051205	chr2	+	3073	26	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-1	14	at_least_one_novel_splicesite	TRUE	canonical	3	117	junction_16	103.852156453297	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAACTGTCGGCCAAAGT	NA	False	NA	60	True	GATAAA	-10	NA	51962842	51997751	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983578_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051212	chr2	+	1024	1	Genic_Genomic	ENSMUSG00000036202.17	novel	NA	NA	NA	NA	-1	-3151	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGTTTTCGAGGCCAAAAA	NA	False	NA	NA	False	AAAAAG	-12	NA	51962842	51963866	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr2_+_51962800_51963900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051259	chr2	+	3517	17	FSM	ENSMUSG00000026827.13	ENSMUST00000028167.3	5620	17	33	2070	33	796	multi-exon	TRUE	canonical	3	146	junction_2	27.9815089612766	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAAGATAGACATCAGACA	NA	False	NA	NA	False	NA	NA	NA	57128426	57258661	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_57128580_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051322	chr2	+	202	1	Intergenic	novelGene_216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACACCAGATTTCGACTCT	NA	False	NA	NA	False	AAAAAG	-4	NA	60325242	60325444	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_60325200_60325400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051361	chr2	+	3209	8	FSM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	-2	123	-2	-123	multi-exon	FALSE	canonical	3	236	junction_6	22.3332825667003	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTTTTTTAAATGTTCT	NA	False	NA	5	True	AATAAA	-17	NA	62494626	62524330	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_62494804_62502620_62502795_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051364	chr2	+	209	1	Intergenic	novelGene_217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAACTGTCTAAACATGA	NA	False	NA	NA	False	NA	NA	NA	62877601	62877810	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_62877600_62877800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051373	chr2	+	2363	6	FSM	ENSMUSG00000044647.17	ENSMUST00000053910.10	4495	6	-2	2134	-2	-12	multi-exon	FALSE	canonical	2	6	junction_1	3.18747549010185	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGAATCGTTTCTTGTGT	5676	False	NA	1	True	AAGAAA	-7	NA	65676183	65853816	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_65676229_65708308_65708397_65779302_65779474_65832646_65832907_65849783_65850081_65852314
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051379	chr2	-	1382	7	FSM	ENSMUSG00000005233.17	ENSMUST00000005365.15	1352	7	-23	-7	-23	7	multi-exon	FALSE	canonical	3	811	junction_6	34.6121365997536	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTCTCTCTTCAGTATGA	NA	False	NA	-3	True	NA	NA	NA	69036561	69024231	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036407
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051433	chr2	-	906	3	ISM	ENSMUSG00000051730.16	ENSMUST00000135487.2	2090	4	0	2766	0	-2766	5prime_fragment	FALSE	canonical	3	609	junction_2	8.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCTGGATTTTTCCTTGT	6817	False	NA	NA	False	TATAAA	-26	NA	69715948	69710857	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_-_69711293_69711640_69711756_69715592
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051466	chr2	+	2502	14	FSM	ENSMUSG00000041966.19	ENSMUST00000154704.8	7739	14	-9	5246	-9	334	multi-exon	FALSE	canonical	3	168	junction_11	23.2697075602773	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATCAATTCTAGTTTTTC	NA	False	NA	5	True	NA	NA	NA	70886078	70920956	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051469	chr2	+	653	1	Genic_Genomic	ENSMUSG00000041966.19	novel	NA	NA	NA	NA	-9	-21758	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGAAACAATGTACTTTAA	NA	False	NA	NA	False	ACTAAA	-42	NA	70886078	70886731	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr2_+_70886100_70886700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051489	chr2	+	2497	16	FSM	ENSMUSG00000027012.16	ENSMUST00000081710.12	2631	16	134	0	-4	0	multi-exon	FALSE	canonical	3	499	junction_2	40.1836893389456	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCACTTTTACTTTTTGA	NA	False	NA	24	True	AATAAA	-26	NA	71042311	71093647	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051506	chr2	-	2398	17	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5256	-52	at_least_one_novel_splicesite	TRUE	canonical	3	19	junction_15	34.4382940017359	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTCTCCTCCTGATGACT	NA	False	NA	-4	True	AATAAA	-17	NA	71164440	71105085	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71163948_71164065_71164384
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051509	chr2	-	2288	16	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5302	-53	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_15	28.2830141408035	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCCTCCTGATGAC	NA	False	NA	-5	True	AATAAA	-16	NA	71164486	71105086	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71164435
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051522	chr2	+	1460	1	Intergenic	novelGene_218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCATTCTGAAGCATTTC	NA	False	NA	NA	False	AAAAAG	-23	NA	71178305	71179765	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_71178300_71179800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051545	chr2	+	4167	26	FSM	ENSMUSG00000027111.17	ENSMUST00000112101.8	4156	26	-11	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	107.199447759772	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCTTTATAAACATGCAAG	NA	False	NA	NA	False	NA	NA	NA	71617272	71687115	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_71617353_71617427_71617665_71646973_71647099_71648824_71648905_71650342_71650599_71652781_71652914_71655852_71656064_71656733_71656928_71657066_71657156_71658239_71658359_71664039_71664139_71664352_71664415_71668611_71668773_71668921_71669066_71670905_71671022_71671129_71671320_71671410_71671495_71671592_71671673_71671822_71671901_71671987_71672091_71673472_71673647_71676126_71676226_71676316_71676428_71676507_71676607_71679724_71679851_71686197
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051563	chr2	+	2435	9	FSM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	-11	0	-11	0	multi-exon	FALSE	canonical	3	1115	junction_3	87.0351042683353	1775	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTTTATTTTTGTTT	8558	False	NA	NA	False	AATAAA	-16	NA	72306491	72317237	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051584	chr2	+	1640	1	FSM	ENSMUSG00000081957.6	ENSMUST00000120282.2	672	1	-89	-879	-89	879	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTAAATGTTTTTAACTTT	NA	False	NA	NA	False	AAGAAA	-34	NA	72464190	72465830	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_72464200_72465800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051632	chr2	+	210	1	Intergenic	novelGene_219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGGGTATATGTTCAT	NA	False	NA	NA	False	AAGAAA	-2	NA	73668450	73668660	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_73668400_73668700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051646	chr2	-	2854	1	NIC	ENSMUSG00000018770.10	novel	723	5	NA	NA	-9	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73741644	73738790	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_73738800_73741600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051663	chr2	-	748	2	Genic_Genomic	ENSMUSG00000081406.5	novel	750	1	NA	NA	-36	77	multi-exon	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTCAAATGGCACAACAA	NA	False	NA	NA	False	NA	NA	NA	75022202	75021339	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr2_-_75021913_75022027
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051666	chr2	+	859	1	Antisense	novelGene_ENSMUSG00000081406.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACATTTTCTATTTTAACA	NA	False	NA	NA	False	NA	NA	NA	75021339	75022198	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr2_+_75021300_75022200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051679	chr2	+	3042	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111962.8	5150	11	-6	2114	0	1172	multi-exon	FALSE	canonical	3	3726	junction_1	2097.55310779012	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTCCTTTTATTCATA	7475	False	NA	NA	False	ATTAAA	-16	NA	75489604	75497637	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051689	chr2	-	2411	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	65	-1	65	1	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGACTTTTTGAATTTAT	NA	False	NA	2	True	AATAAA	-23	NA	75534920	75505855	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051700	chr2	+	5662	20	FSM	ENSMUSG00000042410.17	ENSMUST00000047232.14	7359	20	-3	1700	-3	-1700	multi-exon	FALSE	canonical	3	643	junction_12	64.0151038271871	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGTGTGGAGCTGTTTTT	484	False	NA	22	True	AATAAA	-33	NA	75662517	75759994	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_75662856_75681837_75681928_75683065_75683157_75684513_75684635_75684874_75684950_75687360_75687433_75689242_75689323_75692277_75692359_75697090_75697217_75698648_75698758_75707814_75707943_75718459_75718512_75722135_75722213_75724388_75724502_75730525_75730596_75733261_75733324_75735202_75735293_75739944_75740045_75741964_75742023_75756265
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051707	chr2	-	2651	1	FSM	ENSMUSG00000075271.5	ENSMUST00000099994.5	3721	1	198	872	198	-872	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTTACTGTTCATAATT	NA	False	NA	-13	True	AATAAA	-18	NA	75812113	75809462	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_75809500_75812100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051712	chr2	-	671	4	FSM	ENSMUSG00000056436.5	ENSMUST00000028430.6	655	4	-16	0	-16	0	multi-exon	FALSE	canonical	3	132	junction_3	45.146674542232	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCGTTATGTTTATGA	NA	False	NA	1	True	AATAAA	-30	NA	76190810	76184285	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_76184581_76186423_76186617_76187916_76187946_76190656
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051718	chr2	+	1909	10	FSM	ENSMUSG00000042369.9	ENSMUST00000046389.5	1898	10	-11	0	-11	0	multi-exon	FALSE	canonical	3	321	junction_1	22.7991769398766	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATGACTTATTTATATGAA	NA	False	NA	55	True	AATAAA	-21	NA	76200316	76214112	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708_76210910_76213798
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051724	chr2	+	2409	10	NNC	ENSMUSG00000042369.9	novel	1898	10	NA	NA	22	5795	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_9	106.437717254369	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTTTACAGTCTTATTA	NA	False	NA	NA	False	AATAAA	-32	NA	76200349	76219907	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708_76210910_76219060
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051743	chr2	+	2226	8	FSM	ENSMUSG00000002733.9	ENSMUST00000111920.2	2534	8	56	252	56	-252	multi-exon	FALSE	canonical	3	204	junction_7	23.0465367711259	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTAGTGCCTGTTGTAT	6562	False	NA	3	True	ATTAAA	-16	NA	76505680	76526920	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_76505979_76510506_76510624_76513073_76513230_76516962_76517100_76517625_76517791_76520788_76520833_76522992_76523109_76525727
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051760	chr2	-	3091	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111819.8	3090	20	-1	0	-1	0	multi-exon	TRUE	canonical	3	78	junction_1	57.3448044097962	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTCTTTTTTTCTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	77776528	77726109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763111_77766936_77767067_77776493
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051789	chr2	-	4491	31	FSM	ENSMUSG00000027002.14	ENSMUST00000028386.12	4469	31	-22	0	-22	0	multi-exon	TRUE	canonical	3	653	junction_15	66.8594213422628	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTCTTTAAAATCTTTG	NA	False	NA	0	True	AATAAA	-25	NA	80411630	80330855	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_80331756_80332568_80332659_80336516_80336627_80337164_80337282_80339055_80339150_80343020_80343102_80343457_80343541_80348238_80348333_80349902_80350001_80350182_80350314_80350715_80350935_80353719_80353852_80354881_80355022_80355902_80356023_80358878_80359012_80360501_80360648_80363988_80364048_80365817_80365900_80368447_80368581_80370462_80370570_80370853_80370951_80371806_80371864_80375333_80375491_80378244_80378294_80379173_80379312_80383480_80383572_80383650_80383794_80384545_80384603_80385041_80385135_80400462_80400574_80411201
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051794	chr2	+	214	1	Intergenic	novelGene_220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAACCCAAACAAAGCAAG	NA	False	NA	NA	False	NA	NA	NA	80352412	80352626	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_80352400_80352600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051808	chr2	+	1680	1	FSM	ENSMUSG00000064193.9	ENSMUST00000138679.2	1302	1	-47	-331	-47	331	mono-exon	FALSE	NA	NA	NA	NA	NA	1459	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTCTAAATTAGAGATA	NA	False	NA	6	True	AATAAA	-26	NA	80667437	80669117	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_80667400_80669100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051825	chr2	-	1340	9	NIC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_8	41.6863286941894	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84307109	84263198	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051861	chr2	-	1896	7	FSM	ENSMUSG00000050043.17	ENSMUST00000111664.8	1926	7	34	-4	-28	4	multi-exon	FALSE	canonical	3	107	junction_5	582.842865235181	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTTTTTCCTTTACT	5263	False	NA	-3	True	AATAAA	-21	NA	84508428	84501655	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506440_84506502_84508194
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051874	chr2	+	2048	5	FSM	ENSMUSG00000027080.7	ENSMUST00000102645.4	2059	5	13	-2	13	2	multi-exon	FALSE	canonical	3	447	junction_3	24.2525771826418	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCTGGAGTCTTCCCTGT	3370	False	NA	14	True	AATAAA	-23	NA	84508758	84518561	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_84509006_84515534_84515792_84515946_84516044_84516534_84516630_84517209
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051900	chr2	+	2591	15	FSM	ENSMUSG00000027075.17	ENSMUST00000028469.14	2539	15	-53	1	-40	-1	multi-exon	FALSE	canonical	3	43	junction_1	14.9196829314671	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTGTATCTGTGACT	NA	False	NA	16	True	AATAAA	-18	NA	84669698	84693929	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_84670026_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051903	chr2	+	2404	15	NIC	ENSMUSG00000027075.17	novel	3089	15	NA	NA	-29	-1	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	18.8209880674936	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTGTATCTGTGACT	NA	False	NA	16	True	AATAAA	-18	NA	84669709	84693929	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_84669850_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051941	chr2	+	2789	17	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	403.11191354728	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	23	True	AATAAA	-19	NA	84867531	84877453	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875929_84876027_84876117_84876596_84876784_84876989
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051961	chr2	+	2736	17	FSM	ENSMUSG00000027067.17	ENSMUST00000168266.8	2721	17	-9	-6	-9	3	multi-exon	FALSE	canonical	3	121	junction_1	374.603436149483	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTTATGTCTCCTTTCC	NA	False	NA	26	True	AATAAA	-22	NA	84867785	84877456	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000051983	chr2	+	769	1	FSM	ENSMUSG00000082908.5	ENSMUST00000119272.2	253	1	-135	-381	-135	381	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTAAGGAGTCTACCTG	NA	False	NA	NA	False	AATAAA	-43	NA	87356353	87357122	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_87356400_87357100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052014	chr2	+	1124	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111467.4	2281	12	-91	1248	4	1	multi-exon	FALSE	canonical	3	421	junction_3	644.761587047671	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	123	False	NA	52	True	NA	NA	NA	90677525	90695736	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052032	chr2	-	949	7	FSM	ENSMUSG00000005510.10	ENSMUST00000005647.4	1046	7	106	-9	-19	7	multi-exon	FALSE	canonical	3	1877	junction_6	40.2105569333339	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGGTGGTTGTTTTTTT	NA	False	NA	-2	True	AATAAA	-25	NA	90735065	90724970	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734927
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052038	chr2	+	2439	4	FSM	ENSMUSG00000005505.13	ENSMUST00000090682.4	2437	4	-2	0	1	0	multi-exon	FALSE	canonical	3	67	junction_2	4.10960933531265	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCTGTGTTGACT	2336	False	NA	NA	False	AATAAA	-42	NA	90735084	90740905	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_90735254_90736009_90736628_90737888_90737996_90739360
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052068	chr2	+	3979	14	NIC	ENSMUSG00000005506.17	novel	4678	14	NA	NA	19	-610	combination_of_known_junctions	FALSE	canonical	3	185	junction_9	174.629345426316	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTACATTTTGGAGACAAA	2397	False	NA	NA	False	AAAAAG	-15	NA	90770821	90849225	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839546_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052111	chr2	-	2379	10	FSM	ENSMUSG00000002105.16	ENSMUST00000073575.12	2469	10	90	0	-29	0	multi-exon	FALSE	canonical	3	29	junction_7	9.55684745788763	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCTTCCACATACTAGG	4257	False	NA	0	True	AATAAA	-15	NA	90900672	90892135	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895250_90895353_90895926_90896046_90896357_90896472_90898775_90899085_90900499
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052123	chr2	+	3712	11	FSM	ENSMUSG00000002103.17	ENSMUST00000239169.2	4652	11	2	938	2	-938	multi-exon	FALSE	canonical	3	45	junction_7	11.5134703716994	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCAAGTTGGTATCATCT	5062	False	NA	NA	False	AAAACA	-5	NA	91033258	91043504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_91033394_91033945_91034042_91034584_91034672_91036100_91036254_91036354_91036454_91036532_91036623_91037061_91037195_91038161_91038245_91038384_91038492_91038605_91038782_91040951
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052149	chr2	-	1602	9	FSM	ENSMUSG00000040591.19	ENSMUST00000102594.11	1977	9	-38	413	0	1	multi-exon	TRUE	canonical	3	72	junction_5	19.7673974007708	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGAGTCTAAAGCCAGT	NA	False	NA	-6	True	AATAAA	-19	NA	91275025	91108587	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_91109303_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91252210_91252314_91274913
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052158	chr2	+	177	1	Intergenic	novelGene_221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAACAGATTGTTAAC	NA	False	NA	NA	False	NA	NA	NA	91249980	91250157	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_91250000_91250200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052168	chr2	-	3481	5	FSM	ENSMUSG00000075040.10	ENSMUST00000099714.10	3469	5	-12	0	0	0	multi-exon	FALSE	canonical	3	3	junction_4	8.1967981553775	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTGTGGCCACTTGCAT	NA	False	NA	NA	False	NA	NA	NA	91480136	91474013	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_91476819_91477940_91478192_91478360_91478423_91479495_91479771_91480048
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052175	chr2	+	2806	13	FSM	ENSMUSG00000027247.17	ENSMUST00000111331.9	2883	13	76	1	-28	-1	multi-exon	FALSE	canonical	3	77	junction_1	81.5357368819887	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATTTGGCTGTTTAGGAA	NA	False	NA	NA	False	AATAAA	-18	NA	91480538	91502670	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_91480598_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052186	chr2	+	2857	14	NNC	ENSMUSG00000027247.17	novel	3201	14	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	87.3500066894048	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATTTGGCTGTTTAGGAA	NA	False	NA	NA	False	AATAAA	-18	NA	91480562	91502670	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_91480598_91482093_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052193	chr2	+	2869	14	NNC	ENSMUSG00000027247.17	novel	2866	14	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	98.2376661635161	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATTTGGCTGTTTAGGAA	NA	False	NA	NA	False	AATAAA	-18	NA	91480565	91502670	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_91480598_91482108_91482169_91484387_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052237	chr2	+	2187	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	19	15	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	37.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTACTTCTGGACTGCTC	3392	False	NA	NA	False	NA	NA	NA	91541216	91551905	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_91541411_91542424_91543211_91550698
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052239	chr2	+	2373	3	FSM	ENSMUSG00000027243.9	ENSMUST00000090608.6	2308	3	-50	-15	19	15	multi-exon	FALSE	canonical	3	50	junction_1	26	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTACTTCTGGACTGCTC	3392	False	NA	NA	False	NA	NA	NA	91541216	91551905	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_91541597_91542424_91543211_91550698
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052264	chr2	-	729	5	NNC	ENSMUSG00000027239.15	novel	773	5	NA	NA	-35	7	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_3	1066.58860391437	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTCTTTTTTAATATATAA	NA	False	NA	NA	False	AATAAA	-26	NA	91762079	91760165	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_91760461_91761162_91761325_91761440_91761595_91761716_91761794_91762038
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052267	chr2	-	806	5	FSM	ENSMUSG00000027239.15	ENSMUST00000111309.8	771	5	-51	16	-40	7	multi-exon	FALSE	canonical	3	95	junction_4	1107.84859073792	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTCTTTTTTAATATATAA	NA	False	NA	NA	False	AATAAA	-26	NA	91762084	91760165	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761971
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052286	chr2	-	3509	31	FSM	ENSMUSG00000040479.13	ENSMUST00000028667.10	3584	31	78	-3	78	1	multi-exon	FALSE	canonical	3	212	junction_9	28.4788615565222	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTTCTTTTTTTCTTG	NA	False	NA	-2	True	AGTAAA	-19	NA	91793924	91763167	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767117_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105_91775215_91793630
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052302	chr2	+	191	1	Intergenic	novelGene_222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTATTTAGTTATTTCAT	1442	False	NA	NA	False	NA	NA	NA	91965316	91965507	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_91965300_91965500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052308	chr2	-	2462	15	FSM	ENSMUSG00000040434.17	ENSMUST00000068586.13	2445	15	-17	0	-17	0	multi-exon	FALSE	canonical	0	0	junction_10	34.8762389144289	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGAGTGTTTTGTCTGT	NA	False	NA	0	True	NA	NA	NA	92201419	92195390	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052335	chr2	-	3969	12	FSM	ENSMUSG00000068742.12	ENSMUST00000090559.12	3976	12	7	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	10.1019595513375	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTTGTGTAATCTATCT	NA	False	NA	NA	False	AGTAAA	-2	NA	92264381	92233990	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_92236166_92241970_92242113_92242958_92243052_92243293_92243497_92243611_92243764_92243980_92244293_92246498_92246640_92252506_92252596_92253222_92253408_92254889_92255033_92257246_92257356_92264156
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052353	chr2	+	2669	8	FSM	ENSMUSG00000068735.15	ENSMUST00000111266.8	2703	8	32	2	-4	0	multi-exon	FALSE	canonical	3	75	junction_2	82.3119997699148	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCGTGGTGTCCTGTTTT	NA	False	NA	18	True	NA	NA	NA	93017924	93032102	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_93018093_93027241_93027324_93027953_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052359	chr2	-	1319	10	FSM	ENSMUSG00000027217.14	ENSMUST00000111265.9	3751	10	-33	2465	-15	22	multi-exon	FALSE	canonical	3	49	junction_2	5.53774924194538	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGACATGAAGGGGCCTC	NA	False	NA	NA	False	NA	NA	NA	93164865	93034569	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_93034768_93036044_93036129_93040138_93040322_93041168_93041268_93042162_93042238_93050363_93050559_93053056_93053130_93054841_93054924_93142291_93142373_93164616
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052394	chr2	-	3041	15	NIC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-235	0	intron_retention	FALSE	canonical	1	2	junction_14	23.4539279161056	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	-1	True	AATAAA	-22	NA	93699737	93685706	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93698783
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052395	chr2	-	2369	15	NNC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-61390	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_14	11.1785143768512	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	-1	True	AATAAA	-22	NA	93760892	93685706	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93760610
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052421	chr2	-	1907	11	FSM	ENSMUSG00000027195.11	ENSMUST00000028619.5	1902	11	-5	0	-5	0	multi-exon	TRUE	canonical	3	670	junction_5	45.0653969249135	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATTTTTGATAGTGGAA	NA	False	NA	NA	False	AATAAA	-31	NA	93988314	93863033	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052429	chr2	-	4586	25	NNC	ENSMUSG00000027194.17	novel	4590	25	NA	NA	-1	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_13	55.9917528649433	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTGGTGTAGTTTTTCT	NA	False	NA	-1	True	AATAAA	-22	NA	94237025	94131110	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_94132213_94133889_94134034_94135288_94135409_94153433_94153518_94154706_94154867_94157042_94157164_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194914_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052439	chr2	-	3712	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	-16	-45	at_least_one_novel_splicesite	FALSE	canonical	3	565	junction_1	211.688282609319	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTCTTAATGTGTTA	NA	False	NA	-1	True	AATAAA	-19	NA	94268497	94242071	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_94244132_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052450	chr2	-	972	7	FSM	ENSMUSG00000027165.17	ENSMUST00000111231.10	2273	7	-41	1342	-22	1	multi-exon	FALSE	canonical	3	119	junction_5	14.4299072146089	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCTCTGTGGAAATGTAC	NA	False	NA	-19	True	AATAAA	-16	NA	101459376	101392467	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_101392700_101406356_101406497_101413865_101413933_101415588_101415661_101416656_101416815_101440868_101441021_101459225
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052463	chr2	+	1195	6	FSM	ENSMUSG00000027163.14	ENSMUST00000028584.8	1191	6	-3	-1	-3	1	multi-exon	FALSE	canonical	3	160	junction_2	9.72830920561225	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCTGGTCGTGGTTCTTT	NA	False	NA	30	True	AATAAA	-26	NA	101716594	101731992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_101716665_101725479_101725606_101727384_101727525_101729212_101729248_101730213_101730318_101731272
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052472	chr2	-	2518	1	FSM	ENSMUSG00000075012.5	ENSMUST00000099678.5	3134	1	616	0	616	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGAGGTTTGATTTGAT	NA	False	NA	NA	False	AATAAA	-26	NA	102282228	102279710	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_102279700_102282200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052487	chr2	-	2494	13	FSM	ENSMUSG00000027187.11	ENSMUST00000028610.10	2613	13	-26	145	-26	-145	multi-exon	FALSE	canonical	3	472	junction_10	47.7368364636321	353	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTGCTTTCAGCTCTG	NA	False	NA	0	True	AATAAA	-24	NA	103315531	103284338	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052511	chr2	-	4253	18	FSM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	-6	-178	-6	178	multi-exon	FALSE	canonical	3	1559	junction_1	126.714184008996	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCCCTAGATGGTGTGTT	NA	False	NA	NA	False	GATAAA	-20	NA	103627455	103595184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052519	chr2	-	4110	19	FSM	ENSMUSG00000027184.15	ENSMUST00000028607.13	6169	19	-11	2070	-11	7	multi-exon	FALSE	canonical	3	761	junction_18	276.654863648277	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGTGGTTATGGTACAT	NA	False	NA	-4	True	AATAAA	-24	NA	103628005	103595355	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627286_103627807
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052551	chr2	+	208	1	Intergenic	novelGene_223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAGGAAGTGTGAGAAGG	5103	False	NA	NA	False	NA	NA	NA	103611537	103611745	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_103611500_103611700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052554	chr2	+	2918	11	FSM	ENSMUSG00000027180.13	ENSMUST00000028603.10	4740	11	78	1744	-45	-1507	multi-exon	FALSE	canonical	3	178	junction_10	68.8773547691838	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACCATGGCTACTGCT	NA	False	NA	9	True	ATTAAA	-22	NA	103858143	103891841	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103890226
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052570	chr2	+	585	5	FSM	ENSMUSG00000068686.13	ENSMUST00000111131.9	555	5	-1	-29	-1	2	multi-exon	FALSE	canonical	2	5	junction_4	30.2933573576783	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGTCTTGGCTACATT	NA	False	NA	NA	False	NA	NA	NA	103900192	103921534	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103920473_103920620_103921348
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052588	chr2	+	2852	1	NIC	ENSMUSG00000086454.8	novel	770	3	NA	NA	0	-6020	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTTAAATAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	104389523	104392375	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_104389500_104392400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052590	chr2	+	1862	2	FSM	ENSMUSG00000086454.8	ENSMUST00000127237.2	707	2	-280	-875	0	93	multi-exon	FALSE	canonical	3	577	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_104390321_104398205
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052599	chr2	+	1418	3	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-2	-7110	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	77	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	104389526	104391285	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_104389830_104390068_104390321_104390422
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052646	chr2	-	1594	10	FSM	ENSMUSG00000027167.12	ENSMUST00000122965.8	3048	10	42	1412	-39	-1412	multi-exon	FALSE	canonical	3	175	junction_4	20.3548762623191	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTGCCTTAGAGTTG	NA	False	NA	NA	False	AATAAA	-21	NA	105734867	105532783	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_105533207_105622560_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303_105696426_105727246_105727283_105734613
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052664	chr2	-	3221	5	FSM	ENSMUSG00000027122.16	ENSMUST00000028536.13	3337	5	27	89	0	-89	multi-exon	FALSE	canonical	3	150	junction_1	43.6863823176056	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGCAGGCTTACTGTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	106804742	106792960	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804616
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052676	chr2	-	1882	6	FSM	ENSMUSG00000057234.10	ENSMUST00000081631.10	1894	6	10	2	0	1	multi-exon	FALSE	canonical	3	30	junction_4	7.25534285888682	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATTTATTTATTTT	NA	False	NA	NA	False	AATAAA	-18	NA	109108625	108922643	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109108537
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052691	chr2	+	194	1	Intergenic	novelGene_224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTCTGTGGGGGCATTTT	NA	False	NA	NA	False	NA	NA	NA	109591423	109591617	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_109591400_109591600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052699	chr2	+	759	4	FSM	ENSMUSG00000027162.8	ENSMUST00000151163.2	746	4	-13	0	4	0	multi-exon	FALSE	canonical	3	366	junction_1	18.4932420089069	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTTGAGAGAATCCCAGG	NA	False	NA	NA	False	NA	NA	NA	109721201	109727083	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052712	chr2	+	214	1	Intergenic	novelGene_225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAAAGTATTAAGGTAGCC	NA	False	NA	NA	False	NA	NA	NA	111927804	111928018	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_111927800_111928000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052773	chr2	+	2600	11	FSM	ENSMUSG00000040282.14	ENSMUST00000110918.3	2735	11	-39	174	-22	-174	multi-exon	FALSE	canonical	3	283	junction_9	22.3015694514983	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTACCAGTTTGGTTTG	NA	False	NA	13	True	ATTAAA	-22	NA	115412174	115609075	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052779	chr2	+	461	4	ISM	ENSMUSG00000027349.6	ENSMUST00000028825.5	1861	8	-22	11308	-22	-9	5prime_fragment	FALSE	canonical	2	2	junction_2	0.471404520791032	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCTCAGTTAGATAAAAATA	NA	False	NA	NA	False	CATAAA	-3	NA	117080197	117090713	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_117080320_117088114_117088261_117089701_117089837_117090655
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052818	chr2	+	3623	23	NNC	ENSMUSG00000040084.10	novel	3668	23	NA	NA	43	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_14	136.677426842418	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	15	True	AATAAA	-16	NA	118428734	118472072	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457441_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052841	chr2	+	3630	12	FSM	ENSMUSG00000027332.12	ENSMUST00000028807.6	3665	12	30	5	30	-5	multi-exon	FALSE	canonical	3	194	junction_8	15.0382432594562	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGTCTGAAAAGTGGATG	NA	False	NA	NA	False	AATAAA	-15	NA	118692464	118713385	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708141_118708247_118708355_118708429_118710933
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052857	chr2	+	2057	1	FSM	ENSMUSG00000074916.6	ENSMUST00000099546.6	2090	1	33	0	15	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAACTCTGTAATTCCC	9745	False	NA	8	True	AATAAA	-19	NA	118757009	118759066	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_118757000_118759100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052872	chr2	+	1555	8	FSM	ENSMUSG00000027326.14	ENSMUST00000152380.8	1573	8	28	-10	0	10	multi-exon	FALSE	canonical	3	17	junction_1	17.907927784951	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAGCCATACCAATATTT	7239	False	NA	NA	False	AATAAA	-38	NA	118877627	118899762	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_118877705_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052875	chr2	+	1558	8	NIC	ENSMUSG00000027326.14	novel	5527	8	NA	NA	0	10	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	17.5963818173289	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAGCCATACCAATATTT	7239	False	NA	NA	False	AATAAA	-38	NA	118877627	118899762	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_118877708_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052877	chr2	+	1892	8	FSM	ENSMUSG00000027326.14	ENSMUST00000028799.12	5527	8	-3	3638	0	10	multi-exon	FALSE	canonical	3	41	junction_1	11.0822527732683	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAGCCATACCAATATTT	7239	False	NA	NA	False	AATAAA	-38	NA	118877627	118899762	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_118878042_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052881	chr2	+	2346	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	-195	1217	-181	865	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGGAAGAAAGCTCAAAAG	NA	False	NA	10	True	ATTAAA	-17	NA	118943092	118966554	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052913	chr2	+	1654	11	NNC	ENSMUSG00000068580.12	novel	2008	11	NA	NA	-19	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	32.466752224391	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGATGTTTTTTCTGTCC	270	False	NA	9	True	NA	NA	NA	119039473	119047531	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_119039669_119040962_119041085_119041261_119041313_119041661_119041781_119041878_119042025_119042386_119042496_119045314_119045522_119045934_119046009_119046689_119046789_119046912_119047023_119047109
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052929	chr2	+	2275	10	NNC	ENSMUSG00000027315.14	novel	2273	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	103.024029319785	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTTTGTTGAGCTC	NA	False	NA	13	True	AATAAA	-1	NA	119067840	119079995	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_119067954_119068181_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076812_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052961	chr2	+	1614	3	FSM	ENSMUSG00000027313.4	ENSMUST00000028780.4	1637	3	-32	55	-32	-55	multi-exon	FALSE	canonical	3	568	junction_2	33	494	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTTTGTCTCTGTACAG	7120	False	NA	26	True	CATAAA	-26	NA	119181677	119184807	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_119182118_119182837_119182874_119183669
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052971	chr2	+	2596	7	FSM	ENSMUSG00000014077.14	ENSMUST00000014221.13	2609	7	10	3	10	-3	multi-exon	FALSE	canonical	3	147	junction_2	25.1197133741609	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTGGTTGAGTTTTACC	NA	False	NA	NA	False	AATAAA	-22	NA	119378187	119417505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_119378399_119391211_119391285_119397130_119397212_119402248_119402377_119411175_119411238_119415010_119415134_119415587
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000052977	chr2	+	1546	3	FSM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	-2	6756	-2	0	multi-exon	FALSE	canonical	3	345	junction_2	41.5	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTTGGACAGATTTT	NA	False	NA	NA	False	TATAAA	-29	NA	119424781	119431227	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_119424916_119426739_119426993_119430068
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053000	chr2	+	2052	10	FSM	ENSMUSG00000027306.16	ENSMUST00000028771.8	3526	10	7	1467	-5	-383	multi-exon	FALSE	canonical	3	97	junction_4	379.300265433633	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTTCATTGTTTTAAGCG	NA	False	NA	12	True	AATAAA	-15	NA	119449204	119480258	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053053	chr2	-	4733	25	FSM	ENSMUSG00000034032.16	ENSMUST00000048493.12	4744	25	9	2	0	1	multi-exon	FALSE	canonical	3	120	junction_24	70.0848691865005	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCTGGACTGTTTTGTCA	473	False	NA	-4	True	AATAAA	-18	NA	119618009	119594442	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053126	chr2	-	3427	6	FSM	ENSMUSG00000027293.14	ENSMUST00000028755.8	3730	6	0	303	0	-303	multi-exon	FALSE	canonical	3	216	junction_2	18.4217263034711	243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTGTCTCTAAAATGCGT	NA	False	NA	0	True	AATATA	-22	NA	119985087	119919958	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_119922166_119927443_119927609_119932500_119932914_119958072_119958171_119967379_119967557_119984720
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053181	chr2	-	1966	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102497.10	1962	6	-4	0	-4	0	multi-exon	FALSE	canonical	3	64	junction_5	44.5394207416307	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120439840	120434718	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439595
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053183	chr2	-	1800	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102499.8	1961	6	161	0	-4	0	multi-exon	FALSE	canonical	3	29	junction_5	57.8321709777525	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120439840	120434718	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439761
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053220	chr2	-	2170	1	FSM	ENSMUSG00000074890.5	ENSMUST00000110674.4	3056	1	-32	918	-32	-918	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGGGTGAATTTGTTGT	NA	False	NA	1	True	AATAAA	-24	NA	120971166	120968996	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_120969000_120971200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053239	chr2	+	2937	19	FSM	ENSMUSG00000027263.13	ENSMUST00000138601.8	2915	19	-21	-1	20	0	multi-exon	FALSE	canonical	3	47	junction_18	57.833947056195	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTGGCCTTGTAGAACTA	NA	False	NA	3	True	AATAAA	-15	NA	121001668	121029251	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215_121027352_121028644
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053244	chr2	+	4227	18	FSM	ENSMUSG00000027263.13	ENSMUST00000110658.8	4250	18	23	0	-18	0	multi-exon	FALSE	canonical	3	119	junction_12	41.5047418810901	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTGGCCTTGTAGAACTA	NA	False	NA	3	True	AATAAA	-15	NA	121001671	121029251	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053276	chr2	+	1970	13	FSM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	100	700	-8	-700	multi-exon	FALSE	canonical	3	3731	junction_4	277.160252481404	1532	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTTTCCCCTCATGGGA	NA	False	NA	12	True	AATAAA	-21	NA	121244355	121268468	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053314	chr2	-	2782	7	FSM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	7	1409	7	-1409	multi-exon	FALSE	canonical	3	409	junction_6	26.8747093007534	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACAAGTGTGGTTGAGCA	NA	False	NA	25	True	NA	NA	NA	121337139	121323800	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053331	chr2	-	1962	13	ISM	ENSMUSG00000027238.18	ENSMUST00000110593.9	3950	15	173343	2778	-5332	0	internal_fragment	FALSE	canonical	2	7	junction_6	7.6061926524817	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGATGATTGCAGTAGTG	NA	False	NA	NA	False	AATAAA	-18	NA	121422246	121378787	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_-_121379714_121383818_121383926_121384745_121384815_121386050_121386126_121387797_121387890_121388304_121388369_121393365_121393455_121399373_121399462_121404025_121404150_121406802_121406901_121416386_121416466_121416909_121416953_121422138
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053337	chr2	+	793	4	ISM	ENSMUSG00000060227.16	ENSMUST00000135416.8	928	5	-172	3084	-12	2914	5prime_fragment	FALSE	canonical	3	196	junction_3	27.7168220079832	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCAGATCAGTTTTTGCA	NA	False	NA	NA	False	ATTAAA	-4	NA	121697438	121733603	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053387	chr2	-	1788	6	FSM	ENSMUSG00000033256.15	ENSMUST00000110531.9	1557	6	-230	-1	-11	0	multi-exon	TRUE	canonical	3	69	junction_2	30.854497241083	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCCGAGCATCCACTCGC	NA	False	NA	-10	True	TATAAA	-39	NA	122199629	122179372	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_122180021_122184245_122184366_122184509_122184679_122187563_122187771_122189928_122190071_122199127
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053407	chr2	-	2907	14	NNC	ENSMUSG00000027201.17	novel	2942	16	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	192.845739620923	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCTTACTTGTTGCTTT	NA	False	NA	-8	True	NA	NA	NA	124965558	124929660	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_124930958_124937627_124937680_124937831_124938041_124939896_124939996_124940369_124940439_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124957348_124957411_124958584_124958794_124965304
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053408	chr2	-	2981	15	NNC	ENSMUSG00000027201.17	novel	2999	16	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	185.119500841583	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCTTACTTGTTGCTTT	NA	False	NA	-8	True	NA	NA	NA	124965560	124929660	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_124930958_124937627_124937680_124937831_124938041_124939482_124939555_124939896_124939996_124940369_124940439_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124957348_124957411_124958584_124958794_124965304
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053482	chr2	+	215	1	Intergenic	novelGene_226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGATCAGATTCTGACGA	NA	False	NA	NA	False	NA	NA	NA	126431354	126431569	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_126431400_126431600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053486	chr2	-	2690	9	FSM	ENSMUSG00000027361.16	ENSMUST00000110425.9	4153	9	-1	1464	-1	7	multi-exon	FALSE	canonical	3	222	junction_1	62.4468524026632	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGACTCATGTTTTGACT	NA	False	NA	-3	True	ATTAAA	-21	NA	126517489	126470825	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_126472303_126481148_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053521	chr2	-	2064	16	ISM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	-6	37692	-6	11	5prime_fragment	FALSE	canonical	3	201	junction_10	20.8373596109381	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAACCAAAGATGAAATTGTA	NA	False	NA	NA	False	AAGAAA	-2	NA	126718156	126671176	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_-_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053528	chr2	+	1135	8	FSM	ENSMUSG00000001999.16	ENSMUST00000002064.15	1160	8	25	0	-1	0	multi-exon	FALSE	canonical	3	72	junction_1	50.5988626152721	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAATAGTGTTGATGACT	2236	False	NA	NA	False	AATAAA	-20	NA	126912611	126939004	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053572	chr2	+	3142	8	FSM	ENSMUSG00000027367.17	ENSMUST00000110375.9	3116	8	-20	-6	-9	6	multi-exon	FALSE	canonical	3	326	junction_5	27.592515992122	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTTCATTTCTGGCCAC	NA	False	NA	15	True	AATAAA	-22	NA	127112128	127140858	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_127112801_127126014_127126224_127126451_127126502_127132691_127132803_127132877_127132961_127134070_127134171_127137403_127137489_127139026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053593	chr2	+	2648	22	FSM	ENSMUSG00000046338.5	ENSMUST00000062211.4	2628	22	-20	0	-20	0	multi-exon	TRUE	canonical	3	16	junction_1	53.4925768898164	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	4981	False	NA	14	True	AATAAA	-25	NA	127267098	127278012	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053622	chr2	-	2771	5	FSM	ENSMUSG00000034800.16	ENSMUST00000077422.12	2765	5	1	-7	1	0	multi-exon	FALSE	canonical	3	15	junction_4	7.11951543294907	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAGTGTCTCTATTCA	NA	False	NA	-19	True	NA	NA	NA	127426596	127417452	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127426549
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053647	chr2	-	2292	20	FSM	ENSMUSG00000027378.17	ENSMUST00000110357.2	2296	20	6	-2	6	0	multi-exon	TRUE	canonical	3	41	junction_11	13.7437973922422	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGTTATATCTAAATTTT	2797	False	NA	2	True	AATAAA	-18	NA	127630811	127582653	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608039_127610090_127610179_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053649	chr2	-	2289	20	NNC	ENSMUSG00000027378.17	novel	2296	20	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_12	17.789940822269	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGTTATATCTAAATTTT	2797	False	NA	2	True	AATAAA	-18	NA	127630811	127582653	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608039_127610090_127610176_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053651	chr2	-	2295	20	FSM	ENSMUSG00000027378.17	ENSMUST00000028857.14	2260	20	-37	2	6	0	multi-exon	FALSE	canonical	3	19	junction_11	16.3928570350886	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGTTATATCTAAATTTT	2797	False	NA	2	True	AATAAA	-18	NA	127630811	127582653	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608042_127610090_127610179_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053667	chr2	-	3433	25	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	-5	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_18	144.978350874268	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGTTGTTCTAAATACTC	NA	False	NA	1	True	AATAAA	-24	NA	127673790	127643035	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663777_127663857_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053684	chr2	-	6360	48	FSM	ENSMUSG00000014355.11	ENSMUST00000014499.10	8942	48	-15	2597	-15	-2597	multi-exon	FALSE	canonical	3	297	junction_42	39.2671319365267	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTGCTTTGGACTTCAG	NA	False	NA	1	True	AATAAA	-26	NA	128529326	128454620	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_128454984_128457289_128457425_128459473_128459673_128461173_128461270_128461813_128461901_128464292_128464432_128465415_128465484_128465797_128465876_128466777_128466896_128469040_128469128_128470416_128470611_128471436_128471491_128471599_128471691_128472147_128472225_128474517_128474593_128475256_128475336_128476352_128476436_128476557_128476693_128479027_128479120_128483261_128483497_128484365_128484638_128487053_128487173_128490224_128490440_128492115_128492295_128494615_128494687_128494771_128494809_128495086_128495166_128499045_128499195_128500167_128500260_128501656_128501926_128502724_128502800_128505794_128505983_128507367_128507429_128508484_128508626_128510844_128510980_128511569_128511636_128511742_128511834_128513981_128514078_128516470_128516681_128517590_128517812_128518021_128518168_128520130_128520205_128521439_128521523_128522028_128522130_128522313_128522366_128526421_128526584_128527743_128527981_128529072
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053698	chr2	+	2042	7	FSM	ENSMUSG00000027394.14	ENSMUST00000035812.14	4567	7	-9	2534	-9	-2534	multi-exon	FALSE	canonical	3	70	junction_4	11.1118055338555	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATCTTACTTTACTTA	NA	False	NA	NA	False	AAAACA	-13	NA	128907852	128935669	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_128908224_128910774_128910854_128917775_128918009_128923129_128923266_128923893_128924164_128930913_128931058_128934860
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053723	chr2	+	3371	11	FSM	ENSMUSG00000027397.15	ENSMUST00000028880.10	3316	11	-56	1	-56	-1	multi-exon	FALSE	canonical	3	202	junction_5	146.125973050652	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTTGTGCTTTTTGTT	NA	False	NA	21	True	AATAAA	-23	NA	129040627	129053535	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053729	chr2	+	3337	12	NNC	ENSMUSG00000027397.15	novel	3316	11	NA	NA	0	-1	intron_retention	FALSE	canonical	2	9	junction_6	191.197833591932	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTTGTGCTTTTTGTT	NA	False	NA	21	True	AATAAA	-23	NA	129040720	129053535	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129046165_129046225_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053744	chr2	-	3108	9	NNC	ENSMUSG00000048327.7	novel	3137	9	NA	NA	25	-1	at_least_one_novel_splicesite	TRUE	canonical	3	74	junction_2	84.1037305950218	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCTGCCTGTTGTTCTCT	NA	False	NA	-1	True	AATAAA	-19	NA	129139107	129110130	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_129111184_129112494_129112679_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053759	chr2	+	4065	8	FSM	ENSMUSG00000037902.19	ENSMUST00000103202.10	3982	8	-83	0	-73	0	multi-exon	FALSE	canonical	3	97	junction_1	10.6215030259663	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGGGGGTGTTCCATT	NA	False	NA	NA	False	AATAAA	-20	NA	129435041	129474148	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469906_129471846
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053780	chr2	-	1103	7	FSM	ENSMUSG00000027404.17	ENSMUST00000103199.9	1161	7	50	8	-19	-8	multi-exon	TRUE	canonical	3	3295	junction_4	264.518850409989	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTGATATATTCATTTG	NA	False	NA	-19	True	AATAAA	-20	NA	130021273	130013562	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053783	chr2	-	831	6	NNC	ENSMUSG00000027404.17	novel	1161	7	NA	NA	1968	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1478.48268167064	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTATACATACAGTTGAT	NA	False	NA	-30	True	AATAAA	-9	NA	130019087	130013573	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_130013722_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053790	chr2	+	1895	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	-20	2	-20	-1	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTATTTTGTTTAT	NA	False	NA	29	True	AATAAA	-18	NA	130116329	130121231	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053803	chr2	+	2342	12	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	433	junction_11	590.287953263994	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	26	True	AATAAA	-15	NA	130116363	130121228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053813	chr2	+	2423	11	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	433	junction_10	614.848566721921	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	26	True	AATAAA	-15	NA	130116365	130121228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053829	chr2	+	2678	8	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	1993	junction_1	211.243548385966	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	25	True	AATAAA	-14	NA	130116365	130121227	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130119891_130120075_130120211_130120816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053834	chr2	+	2799	8	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	12	intron_retention	FALSE	canonical	3	1993	junction_1	222.057723696027	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCCAAGGAGGAGTTGGC	NA	False	NA	NA	False	AAAAAG	-4	NA	130116365	130120915	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119891_130120075
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053849	chr2	+	1858	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	703.559944170589	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTATGTGTGTATTTTG	NA	False	NA	24	True	AATAAA	-13	NA	130116365	130121226	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119895_130120075_130120211_130120816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053850	chr2	+	1849	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	706.512316164808	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTATGTGTGTATTTTG	NA	False	NA	24	True	AATAAA	-13	NA	130116365	130121226	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120206_130120816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053856	chr2	+	1939	11	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	1876	junction_8	241.9110580358	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	26	True	AATAAA	-15	NA	130116365	130121228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053864	chr2	+	2460	11	ISM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	7	0	-1	intron_retention	FALSE	canonical	3	1876	junction_9	242.391501501187	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTATGTGTGTATTTTG	NA	False	NA	24	True	AATAAA	-13	NA	130116365	130121226	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053865	chr2	+	1975	13	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	83	junction_12	803.725630354594	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	26	True	AATAAA	-15	NA	130116365	130121228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120452_130120816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053880	chr2	+	1856	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	703.559944170589	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTATGTGTGTATTTTG	NA	False	NA	24	True	AATAAA	-13	NA	130116365	130121226	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119897_130120079_130120211_130120816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053950	chr2	+	3235	21	FSM	ENSMUSG00000027303.19	ENSMUST00000028769.14	5325	21	-8	2098	-8	3	multi-exon	FALSE	canonical	3	182	junction_14	22.4438744427071	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCGGTCCCTTTGTCTTGG	NA	False	NA	15	True	AATAAA	-23	NA	130292189	130395946	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_130292479_130345393_130345473_130345913_130346256_130359650_130359736_130360869_130360944_130361291_130361429_130374008_130374100_130375003_130375081_130377242_130377280_130379471_130379570_130381554_130381675_130382402_130382570_130383214_130383351_130384226_130384377_130385989_130386084_130386340_130386418_130386868_130387004_130391404_130391531_130391610_130391763_130394116_130394253_130395313
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053957	chr2	+	1061	3	FSM	ENSMUSG00000037740.9	ENSMUST00000046149.9	1057	3	-4	0	-4	0	multi-exon	FALSE	canonical	3	543	junction_1	21	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCCATTTACTGGCT	381	False	NA	14	True	NA	NA	NA	130405657	130407314	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_130405911_130406000_130406352_130406857
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000053964	chr2	-	3007	7	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	-2	-873	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_5	32.7078821624934	58	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTGCCTATTGGCTTGA	NA	False	NA	NA	False	ATTAAA	-22	NA	130471960	130432794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130470408_130470556_130471835
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054007	chr2	-	3047	20	NIC	ENSMUSG00000074796.11	novel	3196	21	NA	NA	-7	2	combination_of_known_junctions	FALSE	canonical	3	23	junction_19	27.8455375458768	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTCGCCCTCCCTGGTA	NA	False	NA	1	True	AATAAA	-24	NA	130539396	130526030	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130539278
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054009	chr2	-	3153	21	FSM	ENSMUSG00000074796.11	ENSMUST00000099362.11	3196	21	43	0	-7	0	multi-exon	FALSE	canonical	3	76	junction_7	21.856063231973	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCAGTCGCCCTCCCTGG	NA	False	NA	-1	True	AATAAA	-22	NA	130539396	130526032	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130538567_130538676_130539278
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054030	chr2	-	1324	6	FSM	ENSMUSG00000027327.17	ENSMUST00000103188.10	1241	6	-68	-15	-7	14	multi-exon	FALSE	canonical	3	656	junction_1	33.1336686770421	461	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGGGGTTTTTTGTTCTCT	NA	False	NA	0	True	AATAAA	-29	NA	131002008	130988229	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995513_130995631_131001872
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054043	chr2	+	3014	15	FSM	ENSMUSG00000027330.17	ENSMUST00000079857.9	3004	15	-10	0	-1	0	multi-exon	FALSE	canonical	3	36	junction_6	17.0899481137484	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTGTTTGTTATGCAGA	NA	False	NA	NA	False	AATAAA	-18	NA	131028867	131040417	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033687_131034476_131034609_131034987_131035069_131035158_131035333_131035514_131035608_131036034_131036098_131036258_131036358_131036545_131036680_131038896_131039009_131039148
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054059	chr2	+	2876	7	FSM	ENSMUSG00000037523.14	ENSMUST00000041362.12	2867	7	-9	0	-5	0	multi-exon	FALSE	canonical	3	174	junction_4	7.24377127070024	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGAGTTCCAAATTTC	7255	False	NA	14	True	ATTAAA	-19	NA	131075977	131089945	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_131076048_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054066	chr2	+	3078	7	FSM	ENSMUSG00000037523.14	ENSMUST00000110199.3	3057	7	-21	0	17	0	multi-exon	FALSE	canonical	3	32	junction_1	57.107111835762	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGAGTTCCAAATTTC	7281	False	NA	14	True	ATTAAA	-19	NA	131076003	131089945	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_131076276_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054209	chr2	-	3497	4	ISM	ENSMUSG00000043110.3	ENSMUST00000049787.3	3715	5	900	196	900	-196	3prime_fragment	FALSE	canonical	3	9	junction_1	2.86744175568088	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAGAAAGTTACAAAG	NA	False	NA	NA	False	NA	NA	NA	132721911	132710420	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_-_132712824_132713946_132714079_132719932_132720138_132721154
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054217	chr2	+	395	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	286.975415129744	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488442	135493987	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493733
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054219	chr2	+	560	6	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	272.795454507585	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488442	135493987	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135492537_135492672_135493417_135493482_135493766
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054220	chr2	+	356	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	189.342722771874	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488442	135493987	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_135488469_135490846_135490892_135493417_135493482_135493766
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054221	chr2	+	445	5	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	294.88217986172	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488442	135493987	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_135488469_135490827_135490892_135491052_135491123_135493417_135493482_135493766
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054222	chr2	+	426	5	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	251.746400172872	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488442	135493987	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493417_135493482_135493766
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054243	chr2	-	2964	6	FSM	ENSMUSG00000027274.17	ENSMUST00000110089.9	3178	6	214	0	-21	0	multi-exon	FALSE	canonical	3	83	junction_3	119.159389055164	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTATACAATCCTTACTA	NA	False	NA	0	True	AATAAA	-20	NA	136733095	136715699	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136732962
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054274	chr2	+	1098	4	FSM	ENSMUSG00000068205.15	ENSMUST00000110062.8	3554	4	0	2456	0	0	multi-exon	FALSE	canonical	3	66	junction_3	7.40870359029762	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGATTCCTGTTTATGCT	NA	False	NA	NA	False	AATAAA	-17	NA	140237349	140262415	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_140237642_140242781_140242899_140260736_140260835_140261824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054279	chr2	-	2872	3	FSM	ENSMUSG00000051379.13	ENSMUST00000110057.3	3977	3	0	1105	0	22	multi-exon	FALSE	canonical	3	47	junction_1	10.5	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGGCTGGATGACAAAATA	NA	False	NA	NA	False	AATACA	-27	NA	140513389	140501222	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_140503672_140505180_140505380_140513165
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054292	chr2	+	208	1	Intergenic	novelGene_227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACTTGGAGTCCTCAATT	NA	False	NA	NA	False	NA	NA	NA	142955552	142955760	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_142955600_142955800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054312	chr2	+	458	2	Antisense	novelGene_ENSMUSG00000074758.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	283	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTTAGCTCCGTTTCTT	1069	False	NA	NA	False	NA	NA	NA	143991091	143998269	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr2_+_143991331_143998050
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054339	chr2	+	2063	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110028.8	2308	5	245	0	8	0	multi-exon	FALSE	canonical	3	74	junction_1	188.862383761299	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTCTTTCAGTGGACC	NA	False	NA	14	True	AATAAA	-16	NA	144112827	144122436	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_144112935_144113834_144114405_144118234_144118452_144120913_144121047_144121400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054381	chr2	-	2148	5	FSM	ENSMUSG00000027428.10	ENSMUST00000028915.6	2170	5	22	0	22	0	multi-exon	FALSE	canonical	3	248	junction_1	20.0873094266007	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTGACTGCTGTGGTGC	NA	False	NA	-9	True	AATAAA	-20	NA	144392767	144384184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_144385930_144386293_144386380_144389913_144390020_144391023_144391067_144392599
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054386	chr2	+	2772	20	NIC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	371	junction_1	64.9806278398403	224	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144398164	144432669	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_144398245_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054395	chr2	+	2766	20	NNC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	145.919968198714	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGCAGATTTTGTCTCA	NA	False	NA	NA	False	AATAAA	-33	NA	144398170	144432665	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_144398245_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408924_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054416	chr2	+	1144	6	FSM	ENSMUSG00000002728.15	ENSMUST00000110000.8	1142	6	-2	0	-2	0	multi-exon	FALSE	canonical	3	961	junction_2	184.608775522725	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	31	True	TATAAA	-16	NA	145745158	145758345	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757453_145757600_145757723
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054432	chr2	-	224	1	Intergenic	novelGene_228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGATGGTGACTTTAGC	NA	False	NA	NA	False	NA	NA	NA	146047394	146047170	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_-_146047200_146047400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054435	chr2	+	2177	14	FSM	ENSMUSG00000074749.11	ENSMUST00000099278.9	2183	14	6	0	6	0	multi-exon	FALSE	canonical	3	86	junction_6	16.1728825562271	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTCACTGTAATTAGGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	146697789	146812017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_146697964_146703039_146703103_146705626_146705790_146712685_146712767_146730940_146731587_146732900_146733205_146777722_146777805_146783929_146784096_146784836_146784900_146792442_146792509_146794897_146794985_146798119_146798217_146811463_146811508_146811876
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054441	chr2	+	3420	30	FSM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	16	-2	16	2	multi-exon	TRUE	canonical	3	956	junction_9	74.1082057489866	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCTGGTGTCTGATT	NA	False	NA	12	True	AATAAA	-24	NA	146854931	146919922	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054461	chr2	+	994	2	FSM	ENSMUSG00000036992.11	ENSMUST00000047177.4	956	2	-26	-12	-1	12	multi-exon	FALSE	canonical	3	586	junction_1	0	413	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGAGAAGGGTGGAGGAG	NA	False	NA	27	True	AATAAA	-31	NA	148514519	148517959	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_148514756_148517201
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054480	chr2	-	822	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	44	-6	44	6	multi-exon	FALSE	canonical	3	2071	junction_1	68	832	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGTTTCTGTCTCAGG	NA	False	NA	0	True	ATTAAA	-26	NA	148717452	148713635	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_148713964_148714736_148714851_148717072
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054491	chr2	-	2228	9	NNC	ENSMUSG00000033096.8	novel	2235	9	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	29.6479341607472	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGCTGATTATTACT	1010	False	NA	NA	False	AATAAA	-15	NA	150450476	150424999	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_150426109_150427682_150427876_150428300_150428436_150428907_150429087_150430822_150430940_150431952_150432046_150436221_150436338_150442163_150442281_150450307
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054520	chr2	+	2507	14	NNC	ENSMUSG00000033068.17	novel	2540	14	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	38.7806759662898	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTTGCCTCATTAGTG	NA	False	NA	12	True	AATAAA	-17	NA	150590991	150613595	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_150591154_150594932_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485_150605566_150606034_150606100_150607369_150607472_150608878_150609017_150610784_150610842_150612211_150612325_150612548
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054533	chr2	+	3880	20	NNC	ENSMUSG00000033059.8	novel	3909	20	NA	NA	23	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	36.89657627369	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGGTCACTGTGGTATC	NA	False	NA	13	True	ATTAAA	-13	NA	150628677	150673668	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_150629031_150643457_150643560_150648112_150648192_150650716_150650821_150653173_150653306_150655310_150655423_150655840_150655924_150656905_150657054_150657537_150657631_150658669_150658817_150659557_150659722_150660765_150660881_150661793_150661896_150662654_150662803_150665895_150665955_150668248_150668391_150669024_150669233_150670363_150670499_150671547_150671615_150672281
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054543	chr2	+	1127	7	FSM	ENSMUSG00000027454.11	ENSMUST00000028948.5	1087	7	-34	-6	-34	6	multi-exon	FALSE	canonical	3	394	junction_1	28.3058690419888	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTGGTAGCTTATCTTT	2388	False	NA	29	True	AATAAA	-36	NA	150751479	150773206	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801_150767919_150769961_150770037_150772760
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054554	chr2	-	2316	13	ISM	ENSMUSG00000068115.14	ENSMUST00000109896.8	5093	24	13	23561	-9	479	5prime_fragment	FALSE	canonical	3	46	junction_10	8.16836716989523	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTATTAGTCAGCTCTTG	7576	False	NA	NA	False	ATTAAA	-15	NA	150851305	150799999	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_-_150800557_150800670_150800782_150801687_150801863_150805274_150805416_150806053_150806191_150807997_150808163_150811899_150812053_150812943_150813135_150816023_150816091_150817709_150817883_150821352_150821450_150821917_150822112_150851150
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054618	chr2	+	2598	2	FSM	ENSMUSG00000032802.9	ENSMUST00000041500.8	2812	2	206	8	206	-8	multi-exon	FALSE	canonical	3	134	junction_1	0	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCCTTAGCCCAACAGTTT	NA	False	NA	23	True	NA	NA	NA	151947649	151953288	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_151947868_151950908
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054622	chr2	+	991	2	FSM	ENSMUSG00000068079.6	ENSMUST00000089112.6	980	2	-11	0	-11	0	multi-exon	FALSE	canonical	3	131	junction_1	0	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTGTATCCTGGCTAAG	7078	False	NA	NA	False	AATAAA	-17	NA	151985469	151991017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_151986059_151990615
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054641	chr2	+	2577	1	ISM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	52432	5	52358	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTCCATGCAGCCTG	NA	False	NA	14	True	AATAAA	-15	NA	152121190	152123767	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_152121200_152123800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054647	chr2	+	3389	8	FSM	ENSMUSG00000027465.14	ENSMUST00000028963.14	3386	8	-4	1	-4	-1	multi-exon	FALSE	canonical	3	150	junction_1	23.7366503835013	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTTTGTATCATCG	NA	False	NA	27	True	AATAAA	-22	NA	152135743	152155915	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_152135961_152144071_152144258_152146865_152146947_152149908_152150096_152150249_152150352_152152305_152152448_152153236_152153425_152153629
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054669	chr2	-	2228	11	NIC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	58	junction_5	166.375148384607	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174337	152158253	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054673	chr2	-	2271	13	FSM	ENSMUSG00000027466.16	ENSMUST00000028964.14	2252	13	-19	0	-19	0	multi-exon	FALSE	canonical	3	72	junction_12	150.053231295505	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174592	152158253	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953_152174043_152174415
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054674	chr2	-	2384	12	NNC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_11	165.622841479775	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174335	152158253	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173022_152173953
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054689	chr2	-	3286	11	NIC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	1	-3	intron_retention	FALSE	canonical	3	483	junction_1	60.3850974993003	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGGAAAGGTGTCATGCT	NA	False	NA	-15	True	ATTAAA	-13	NA	152174303	152158256	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054703	chr2	-	2096	4	FSM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	-66	-4	-66	4	multi-exon	FALSE	canonical	3	926	junction_3	7.71722460186015	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGACTTTCTCTTCTT	NA	False	NA	0	True	AATAAA	-33	NA	152186018	152179337	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_152180608_152181634_152181928_152184956_152185248_152185776
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054709	chr2	-	1951	4	NIC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_3	423.359841689733	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	-4	True	AATAAA	-29	NA	152185921	152179341	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_152180608_152181634_152181928_152184956_152185204_152185776
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054730	chr2	+	1579	12	FSM	ENSMUSG00000019188.17	ENSMUST00000125366.8	5204	12	7	3618	7	16	multi-exon	FALSE	canonical	3	117	junction_7	14.82905345753	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCCTAGTGTTTCGTG	NA	False	NA	37	True	NA	NA	NA	152511387	152546972	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152546541
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054743	chr2	+	935	2	NNC	ENSMUSG00000042745.10	novel	934	2	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCTGTGACTTCTTGGA	4426	False	NA	13	True	ATTAAA	-17	NA	152578174	152579330	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_152578671_152578891
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054748	chr2	-	2412	3	FSM	ENSMUSG00000007659.19	ENSMUST00000007803.12	2417	3	10	-5	-8	5	multi-exon	FALSE	canonical	3	148	junction_2	89.5	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGCTCTGCGCCGCAT	NA	False	NA	0	True	AATAAA	-27	NA	152673638	152622582	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_152624203_152671346_152672023_152673522
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054773	chr2	+	4165	18	FSM	ENSMUSG00000027469.17	ENSMUST00000109816.8	3483	18	-11	-671	3	4	multi-exon	FALSE	canonical	3	597	junction_2	86.1429969118501	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTGTC	2697	False	NA	17	True	NA	NA	NA	152689886	152737245	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054775	chr2	+	2856	18	FSM	ENSMUSG00000027469.17	ENSMUST00000178997.8	4161	18	3	1302	3	-635	multi-exon	FALSE	canonical	3	176	junction_2	164.31464036434	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGTTTCAGTCACAGT	2697	False	NA	18	True	AATAAA	-17	NA	152689886	152735939	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_152690030_152696840_152696923_152709106_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054820	chr2	+	2079	13	FSM	ENSMUSG00000003283.16	ENSMUST00000189688.2	2090	13	8	3	8	-3	multi-exon	FALSE	canonical	3	76	junction_9	8.17346655682615	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAAGGGTCAGCTTCTCTG	NA	False	NA	14	True	AATAAA	-24	NA	152950395	152993356	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_152950675_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054856	chr2	-	1319	9	FSM	ENSMUSG00000056941.18	ENSMUST00000071852.10	3210	9	-2	1893	-2	8	multi-exon	FALSE	canonical	3	166	junction_3	11.9373363863133	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCTGAATCCACAAAATGT	NA	False	NA	-11	True	ATTAAA	-25	NA	153474703	153460745	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054861	chr2	+	3253	23	FSM	ENSMUSG00000027478.16	ENSMUST00000072997.10	4208	23	0	955	0	-541	multi-exon	FALSE	canonical	3	33	junction_15	25.158013034314	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAACAGCTCTCTTAGTA	NA	False	NA	NA	False	NA	NA	NA	153491369	153528695	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054863	chr2	+	3067	21	NIC	ENSMUSG00000027478.16	novel	4208	23	NA	NA	0	-541	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	20.6421898063166	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAACAGCTCTCTTAGTA	NA	False	NA	NA	False	NA	NA	NA	153491369	153528695	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517645_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054888	chr2	+	1043	1	FSM	ENSMUSG00000083097.4	ENSMUST00000118786.2	435	1	-118	-490	-118	490	mono-exon	FALSE	NA	NA	NA	NA	NA	279	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATGACCAAGATAACTAT	NA	False	NA	NA	False	NA	NA	NA	153667972	153669015	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_153668000_153669000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054896	chr2	-	1986	14	FSM	ENSMUSG00000027487.12	ENSMUST00000028990.10	1970	14	-10	-6	2	0	multi-exon	FALSE	canonical	3	80	junction_3	9.02265393460642	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTGTCTACTTTTTTCA	5670	False	NA	-9	True	AATAAA	-18	NA	154214649	154177299	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054904	chr2	-	2141	8	FSM	ENSMUSG00000027488.13	ENSMUST00000109728.8	2131	8	-10	0	-10	0	multi-exon	FALSE	canonical	3	100	junction_7	15.9808558939138	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTGTGGTTTGTGTC	NA	False	NA	1	True	AATAAA	-30	NA	154250029	154218232	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_154218829_154218926_154219115_154219927_154220125_154222593_154222725_154222830_154223039_154225699_154225905_154245641_154245828_154249599
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054910	chr2	-	1999	9	NNC	ENSMUSG00000027488.13	novel	2131	8	NA	NA	-13215	-8	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	53.6328665558722	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGCATCATGTCTGTGG	NA	False	NA	-7	True	AATAAA	-22	NA	154263234	154218240	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_154218829_154218926_154219115_154219927_154220125_154222593_154222725_154222830_154223039_154225699_154225905_154245641_154245828_154254470_154254644_154263111
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054940	chr2	-	2357	1	NIC	ENSMUSG00000027490.18	novel	2732	7	NA	NA	38	-7864	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTCATTTTAAAAAGAAAAT	9540	False	NA	NA	False	NA	NA	NA	154411774	154409417	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_154409400_154411800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054944	chr2	-	1522	4	FSM	ENSMUSG00000000876.12	ENSMUST00000000896.11	2789	4	-1	1268	-1	-1268	multi-exon	FALSE	canonical	3	158	junction_1	13.4246870437348	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGGCAGTAGGGTTGT	NA	False	NA	NA	False	NA	NA	NA	154445629	154428945	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_154430013_154434084_154434284_154438121_154438185_154445436
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054950	chr2	+	210	1	Intergenic	novelGene_229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTATCCTATAACTTGT	NA	False	NA	NA	False	TTTAAA	-1	NA	154520609	154520819	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_154520600_154520800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054979	chr2	+	1604	10	NIC	ENSMUSG00000027593.16	novel	1802	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	61.1460506179495	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	False	NA	6	True	AATAAA	-16	NA	154633271	154709164	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_154633469_154636318_154636388_154662926_154663010_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000054986	chr2	+	1452	8	FSM	ENSMUSG00000027593.16	ENSMUST00000109701.10	1709	8	256	1	0	0	multi-exon	FALSE	canonical	3	70	junction_1	30.0557305480255	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	False	NA	6	True	AATAAA	-16	NA	154633271	154709164	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055017	chr2	+	215	1	Intergenic	novelGene_230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCCATGTGGGAAGATAA	NA	False	NA	NA	False	NA	NA	NA	154782717	154782932	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_154782700_154782900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055028	chr2	-	2098	11	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-9	-419	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	457.521627904081	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTTGGCTCTATTAAAA	NA	False	NA	-59	True	GATAAA	-22	NA	154916376	154901648	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907337_154907404_154907507_154907607_154909242_154909319_154910747_154910939_154916284
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055037	chr2	+	5159	25	FSM	ENSMUSG00000027598.17	ENSMUST00000029126.15	5159	25	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	21.5151351765836	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGCCTTTTCGTCTGCT	NA	False	NA	57	True	AATAAA	-17	NA	154975428	155068775	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_154975506_154980115_154980193_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055050	chr2	+	815	3	FSM	ENSMUSG00000027602.10	ENSMUST00000154596.2	826	3	15	-4	15	-1	multi-exon	FALSE	canonical	3	438	junction_2	23	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCCTCCAGCTGCTTG	NA	False	NA	10	True	AATAAA	-22	NA	155118823	155119992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_155118934_155119017_155119125_155119394
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055085	chr2	-	1968	13	FSM	ENSMUSG00000027610.18	ENSMUST00000079691.13	1963	13	-2	-3	-2	3	multi-exon	FALSE	canonical	3	779	junction_12	109.121491925285	1233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTGTTTCATGTACCAA	8348	False	NA	1	True	AATAAA	-22	NA	155434732	155405097	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055092	chr2	-	1830	13	NNC	ENSMUSG00000027610.18	novel	1963	13	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_11	291.088283668184	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTCATTGTTTCATGTAC	8443	False	NA	-2	True	AATAAA	-19	NA	155434637	155405100	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423914_155429361_155429497_155434613
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055156	chr2	-	2421	10	FSM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	245	-33	-5	6	multi-exon	FALSE	canonical	3	315	junction_1	57.3294572333165	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGAATGGATGGAAAAATT	NA	False	NA	-25	True	AATAAA	-26	NA	155771985	155688807	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055174	chr2	+	1371	13	FSM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	6	0	6	0	multi-exon	FALSE	canonical	3	758	junction_4	74.7846445171437	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	16	True	AATAAA	-19	NA	155849970	155860199	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055181	chr2	-	3467	16	FSM	ENSMUSG00000074643.13	ENSMUST00000109607.10	3441	16	-21	-5	-1	2	multi-exon	FALSE	canonical	3	257	junction_15	28.8510350286124	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCGCTCTTGTTGTGTTT	NA	False	NA	2	True	AATAAA	-23	NA	155953880	155913759	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155953705
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055187	chr2	-	3520	17	FSM	ENSMUSG00000074643.13	ENSMUST00000109608.9	3492	17	-22	-6	0	1	multi-exon	FALSE	canonical	3	55	junction_15	81.3740399328926	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCCGCTCTTGTTGTGTT	NA	False	NA	1	True	AATAAA	-22	NA	155953885	155913760	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945318_155953705
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055189	chr2	-	3552	17	NIC	ENSMUSG00000074643.13	novel	3492	17	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	55	junction_15	70.9506595723394	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCCGCTCTTGTTGTGTT	NA	False	NA	1	True	AATAAA	-22	NA	155953885	155913760	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945350_155953705
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055206	chr2	-	2059	13	FSM	ENSMUSG00000027618.18	ENSMUST00000029147.16	2051	13	-5	-3	-5	3	multi-exon	TRUE	canonical	3	228	junction_1	23.0952135493242	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTTTTGAGCATC	3101	False	NA	1	True	AATAAA	-20	NA	155986111	155965555	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055217	chr2	-	843	7	NNC	ENSMUSG00000027618.18	novel	1649	4	NA	NA	0	6406	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	101.365674663566	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATCGGGCACCAAAATG	3106	False	NA	NA	False	NA	NA	NA	155986106	155974020	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_155974157_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055230	chr2	-	2841	18	FSM	ENSMUSG00000027620.17	ENSMUST00000155837.8	2120	18	-20	-701	0	0	multi-exon	FALSE	canonical	3	383	junction_15	717.627699835322	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022116	155989158	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055231	chr2	-	2748	17	FSM	ENSMUSG00000027620.17	ENSMUST00000029149.13	2711	17	-27	-10	2	0	multi-exon	FALSE	canonical	3	1090	junction_5	453.136943808105	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022114	155989158	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055258	chr2	-	1038	2	FSM	ENSMUSG00000027620.17	ENSMUST00000128243.2	1008	2	24	-54	-4	54	multi-exon	FALSE	canonical	3	2349	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAGACAGTATCACAGCT	NA	False	NA	22	True	NA	NA	NA	156022108	156020424	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_156021161_156021806
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055261	chr2	+	1793	11	ISM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	55	17397	-37	27	5prime_fragment	FALSE	canonical	3	289	junction_1	26.5510828404417	322	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGCCTGGTATTTTCCAT	NA	False	NA	NA	False	NA	NA	NA	156038616	156134475	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055286	chr2	+	3552	21	NIC	ENSMUSG00000027624.21	novel	6251	22	NA	NA	-7	866	combination_of_known_junctions	FALSE	canonical	3	98	junction_12	20.7663188841932	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCTGACTGTGATTGATG	7773	False	NA	31	True	AATAAA	-41	NA	156262960	156382772	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055296	chr2	+	2639	4	FSM	ENSMUSG00000027628.11	ENSMUST00000029158.4	3427	4	-25	813	-13	3	multi-exon	FALSE	canonical	3	133	junction_3	2.16024689946929	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGTGTGAGTCTCTTA	NA	False	NA	10	True	ATTAAA	-21	NA	156389490	156410079	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_156389804_156392568_156393370_156397746_156397977_156408784
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055304	chr2	+	2362	4	NNC	ENSMUSG00000027628.11	novel	3427	4	NA	NA	4	2	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	61.0482504981829	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCCTGTGTGAGTCTCTT	NA	False	NA	9	True	ATTAAA	-20	NA	156389507	156410078	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_156389545_156392568_156393370_156397746_156397977_156408784
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055311	chr2	+	2757	5	NNC	ENSMUSG00000027628.11	novel	2766	5	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	64.1190299365173	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCCTGTGTGAGTCTCTT	NA	False	NA	9	True	ATTAAA	-20	NA	156389518	156410078	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_156389804_156391804_156391952_156392568_156393370_156397746_156397977_156408784
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055328	chr2	+	2411	7	FSM	ENSMUSG00000061689.16	ENSMUST00000099145.6	3402	7	-415	1406	7	2	multi-exon	FALSE	canonical	3	22	junction_1	125.628309796089	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAGCGTTTCTCACCCTT	NA	False	NA	13	True	ATTAAA	-16	NA	156562996	156604877	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_156564023_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055338	chr2	-	3292	4	FSM	ENSMUSG00000087179.9	ENSMUST00000137463.8	874	4	-75	-2343	-3	2343	multi-exon	FALSE	canonical	3	47	junction_3	57.393379409127	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTTTCGTGTTTCCT	NA	False	NA	1	True	NA	NA	NA	156681815	156672625	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_156675347_156679742_156679834_156680337_156680457_156681454
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055355	chr2	+	2869	3	FSM	ENSMUSG00000062175.14	ENSMUST00000081335.13	2900	3	36	-5	36	5	multi-exon	FALSE	canonical	3	217	junction_2	7.5	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTGTTTCTTTTTC	NA	False	NA	NA	False	AATAAA	-40	NA	156681962	156697495	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_156682159_156686075_156686302_156695048
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055375	chr2	+	953	3	FSM	ENSMUSG00000027637.4	ENSMUST00000152551.2	765	3	-23	-165	-12	0	multi-exon	FALSE	canonical	3	93	junction_1	636.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGCATGCCTGGTA	4630	False	NA	14	True	AATAAA	-18	NA	156705035	156715483	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_156705338_156714257_156714388_156714962
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055380	chr2	+	602	1	FSM	ENSMUSG00000083831.2	ENSMUST00000117790.2	544	1	25	-83	25	83	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAGAGAGAGAGAGAGAGA	439	False	NA	17	True	AATAAA	-14	NA	156731408	156732010	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_156731400_156732000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055390	chr2	-	4088	11	FSM	ENSMUSG00000027635.16_ENSMUSG00000082163.3	ENSMUST00000103129.9	2080	11	-2	-2006	-2	914	multi-exon	FALSE	canonical	3	138	junction_10	28.450131809888	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGCCTTCATTCAGATT	8132	False	NA	NA	False	AATAAA	-16	NA	156848997	156835178	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848894
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055401	chr2	-	2011	16	FSM	ENSMUSG00000027639.17	ENSMUST00000057725.10	3926	16	54	1861	-5	7	multi-exon	FALSE	canonical	3	122	junction_1	26.3435423248701	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCGGTTAGTTCTTTT	NA	False	NA	2	True	AGTAAA	-25	NA	156977131	156941313	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_156941424_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055466	chr2	+	1089	3	NNC	ENSMUSG00000063019.6	novel	1107	3	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	230.5	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGTGTTGCTACTG	5232	False	NA	30	True	AATAAA	-17	NA	157209528	157238683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_157209561_157220971_157221175_157237829
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055472	chr2	+	3808	14	NNC	ENSMUSG00000027646.16	novel	3813	14	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	38.3334791181517	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTCAGCAGTTTATTG	NA	False	NA	10	True	ATTAAA	-16	NA	157260354	157313758	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_157260416_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055481	chr2	+	4005	15	NNC	ENSMUSG00000027646.16	novel	3586	12	NA	NA	2217	1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	44.3039133112852	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTCAGCAGTTTATTGG	NA	False	NA	11	True	ATTAAA	-17	NA	157262580	157313759	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_157262723_157263520_157263636_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055530	chr2	+	1114	1	FSM	ENSMUSG00000062846.8	ENSMUST00000121302.2	477	1	-84	-553	-84	553	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGTGTGTGTGTGTGTG	5914	False	NA	NA	False	TATAAA	-42	NA	157743371	157744485	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_157743400_157744500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055537	chr2	-	3813	8	FSM	ENSMUSG00000027650.13	ENSMUST00000029179.11	3830	8	17	0	17	0	multi-exon	FALSE	canonical	3	173	junction_3	12.5746749055231	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGAGAGATTTATTTCT	NA	False	NA	-8	True	NA	NA	NA	157870336	157823722	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_157824381_157834887_157834976_157835273_157835479_157837300_157837442_157838996_157839146_157842539_157842729_157848938_157851279_157870293
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055555	chr2	-	3595	13	FSM	ENSMUSG00000037820.16	ENSMUST00000103122.10	3596	13	5	-4	5	4	multi-exon	FALSE	canonical	3	151	junction_8	19.1534374634598	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCCTTGTCCTTTGGGA	8811	False	NA	NA	False	AATAAA	-26	NA	157988351	157958317	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_157959872_157960766_157960904_157962044_157962206_157966040_157966311_157969031_157969275_157970558_157970663_157971242_157971379_157973250_157973429_157974348_157974478_157976170_157976290_157980626_157980870_157984914_157985095_157988210
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055602	chr2	+	2270	4	FSM	ENSMUSG00000027654.3	ENSMUST00000029183.3	2266	4	-4	0	-4	0	multi-exon	FALSE	canonical	3	282	junction_3	16.3571255285137	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGATTCTTTTTGTT	402	False	NA	8	True	AATAAA	-16	NA	158610008	158628557	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_158610508_158621764_158621933_158625052_158625178_158627079
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055659	chr2	+	2146	13	FSM	ENSMUSG00000017858.13	ENSMUST00000018002.13	2248	13	102	0	-35	0	multi-exon	FALSE	canonical	3	222	junction_1	53.5787971122906	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859375	162888061	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055668	chr2	+	2217	13	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	92.6614207148201	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859427	162888061	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_162859577_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055687	chr2	+	3715	14	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-109	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	809.068256568618	59	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	26	True	NA	NA	NA	162896497	162926608	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_162896724_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055797	chr2	-	920	2	Genic_Genomic	ENSMUSG00000070708.6	novel	822	1	NA	NA	-1786	3	multi-exon	FALSE	canonical	3	698	junction_1	0	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGCTGTGCTGGTTGTTTT	883	False	NA	0	True	AATAAA	-20	NA	162931561	162928950	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr2_-_162929768_162931458
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055839	chr2	-	1925	7	FSM	ENSMUSG00000018322.11	ENSMUST00000109384.10	1923	7	0	-2	0	2	multi-exon	FALSE	canonical	3	532	junction_3	35.0606617165164	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCTCTGACGCATTTGT	5881	False	NA	-3	True	ATTAAA	-18	NA	163913089	163895457	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912832
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055857	chr2	-	2450	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	8	0	-8	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCAGCCTGTCAGTTT	NA	False	NA	39	True	AATAAA	-16	NA	164285106	164266174	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055873	chr2	+	2557	12	FSM	ENSMUSG00000017721.16	ENSMUST00000103101.11	2562	12	6	-1	6	1	multi-exon	TRUE	canonical	3	37	junction_9	44.392501786631	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTTGCTTCCTTCCTAAG	5118	False	NA	8	True	AATAAA	-17	NA	164339445	164350222	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055923	chr2	+	1002	6	FSM	ENSMUSG00000001403.14	ENSMUST00000088248.13	967	6	-35	0	-35	0	multi-exon	FALSE	canonical	3	1606	junction_1	43.6458474542539	1689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	AATAAA	-25	NA	164611782	164614827	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_164612001_164612286_164612315_164613212_164613300_164613773_164613979_164614086_164614147_164614423
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055931	chr2	+	938	5	NNC	ENSMUSG00000001403.14	novel	967	6	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	715.889787257787	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	AATAAA	-25	NA	164611848	164614827	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_164612005_164613186_164613300_164613773_164613979_164614086_164614147_164614423
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055937	chr2	-	1152	6	FSM	ENSMUSG00000017307.17	ENSMUST00000103094.11	1152	6	0	0	0	0	multi-exon	TRUE	canonical	3	284	junction_4	26.9250812440743	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8166	False	NA	-1	True	AATAAA	-19	NA	164646802	164634687	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055943	chr2	+	2708	2	FSM	ENSMUSG00000045822.5	ENSMUST00000052107.5	2708	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTGTTTTTTGAGACG	3063	False	NA	22	True	AATAAA	-22	NA	164647017	164664050	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_164647352_164661676
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055953	chr2	+	2425	2	FSM	ENSMUSG00000017764.3	ENSMUST00000017908.3	2705	2	281	-1	-46	1	multi-exon	FALSE	canonical	3	571	junction_1	0	407	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGTCTTGTCTGGTTTAT	8808	False	NA	17	True	AATAAA	-20	NA	164664886	164668792	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_164665121_164666601
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055964	chr2	+	1856	15	ISM	ENSMUSG00000017760.17	ENSMUST00000103092.9	3646	16	870	1447	-36	-434	3prime_fragment	FALSE	canonical	3	800	junction_1	78.7051135439063	516	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTCTTCTCTGTGGCAC	NA	False	NA	19	True	ATTAAA	-19	NA	164675690	164681505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055968	chr2	+	1910	14	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-2	-435	intron_retention	FALSE	canonical	3	800	junction_1	81.5756809102831	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	18	True	ATTAAA	-18	NA	164675724	164681504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055973	chr2	+	1814	15	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-1	-435	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	272.62244955249	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	18	True	ATTAAA	-18	NA	164675725	164681504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679411_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055980	chr2	+	1862	15	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	0	-435	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	269.468751738055	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	18	True	ATTAAA	-18	NA	164675766	164681504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_164675854_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055983	chr2	+	1958	14	ISM	ENSMUSG00000017760.17	ENSMUST00000103093.10	2534	15	974	435	0	-435	3prime_fragment	FALSE	canonical	3	937	junction_10	54.6384566651142	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	18	True	ATTAAA	-18	NA	164675766	164681504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000055990	chr2	+	2069	13	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	0	-435	intron_retention	FALSE	canonical	3	937	junction_9	56.2506790082474	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	18	True	ATTAAA	-18	NA	164675766	164681504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056001	chr2	-	2180	16	FSM	ENSMUSG00000017754.14	ENSMUST00000059954.14	1809	16	-371	0	-371	0	multi-exon	FALSE	canonical	3	278	junction_15	32.6696597268271	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164700002	164681437	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056033	chr2	+	2694	17	FSM	ENSMUSG00000039849.7	ENSMUST00000041643.5	5780	17	11	3075	11	-3075	multi-exon	FALSE	canonical	3	171	junction_4	60.7051017213545	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGAGGGTCTTGGGGCGG	5960	False	NA	19	True	AATACA	-17	NA	164721287	164733299	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_164721410_164724694_164724865_164725996_164726140_164726224_164726350_164727278_164727417_164727595_164727724_164727827_164727983_164728414_164728563_164728643_164728728_164728978_164729079_164730270_164730434_164731013_164731187_164731305_164731393_164731473_164731659_164732334_164732429_164732518_164732695_164732796
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056055	chr2	-	3141	8	FSM	ENSMUSG00000039804.16	ENSMUST00000040381.15	3179	8	38	0	0	0	multi-exon	TRUE	canonical	3	73	junction_1	19.1790702249582	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGCTAATCTTTCTTGG	3020	False	NA	-6	True	ATTAAA	-15	NA	164876749	164842276	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_164844092_164844558_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755_164855083_164865065_164865133_164876602
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056081	chr2	-	1980	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109300.9	2008	10	31	-3	0	3	multi-exon	TRUE	canonical	3	110	junction_9	47.7596864973064	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTGGAGACTACCAGTG	5691	False	NA	-31	True	AATAAA	-21	NA	165129758	165118470	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125524_165129703
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056096	chr2	-	3460	21	NNC	ENSMUSG00000017670.17	novel	3466	21	NA	NA	10	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	100.433510343909	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTCCTATCCACACCTC	NA	False	NA	-15	True	AATAAA	-17	NA	165168389	165131072	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_165132482_165134024_165134103_165136160_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138756_165138898_165139266_165139376_165139460_165139566_165140128_165140258_165140535_165140663_165143860_165143912_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056125	chr2	-	3070	20	NIC	ENSMUSG00000039671.19	novel	5093	23	NA	NA	33	-7	combination_of_known_splicesites	FALSE	canonical	3	102	junction_8	165.186623243575	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGTTTTATATATATACA	NA	False	NA	NA	False	TATAAA	-18	NA	165740903	165627208	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056132	chr2	+	3226	2	Antisense	novelGene_ENSMUSG00000039671.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_1	0	28	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGAAAAGGCCCATCAAAG	NA	False	NA	NA	False	AAAACA	-11	NA	165652161	165660331	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr2_+_165652330_165657273
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056140	chr2	+	1199	1	Intergenic	novelGene_231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGCTATCCATCACCAAA	NA	False	NA	NA	False	NA	NA	NA	165652161	165653360	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_165652200_165653400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056160	chr2	-	2271	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-29	-1	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_1	173.946415231533	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTGCTCTCTTGTTCCG	NA	False	NA	-21	True	AATAAA	-21	NA	165726597	165669102	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165726527
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056166	chr2	-	2341	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	33	-4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	166.859667865936	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCTTTGCTCTCTTGTT	NA	False	NA	-24	True	AATAAA	-18	NA	165740903	165669105	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056175	chr2	+	5777	23	FSM	ENSMUSG00000027678.18	ENSMUST00000109252.8	5757	23	-22	2	-22	-2	multi-exon	FALSE	canonical	3	143	junction_19	38.1274504699546	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTAGCCCACTCATCATTT	NA	False	NA	14	True	ATTAAA	-20	NA	165834533	165913388	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910251_165910469_165911124_165911300_165911730_165911873_165912051
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056181	chr2	+	5763	23	FSM	ENSMUSG00000027678.18	ENSMUST00000088095.6	7531	23	-6	1774	-5	-2	multi-exon	FALSE	canonical	3	140	junction_19	38.5042929880864	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTAGCCCACTCATCATTT	NA	False	NA	14	True	ATTAAA	-20	NA	165834550	165913388	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910248_165910469_165911124_165911300_165911730_165911873_165912051
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056190	chr2	-	3806	21	NNC	ENSMUSG00000006800.15	novel	4580	21	NA	NA	-44	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	203.951336107416	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGGACTTTTTTGCTCT	NA	False	NA	-7	True	NA	NA	NA	165997627	165915830	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165997418
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056191	chr2	-	3834	21	FSM	ENSMUSG00000006800.15	ENSMUST00000088086.4	3927	21	102	-9	102	3	multi-exon	FALSE	canonical	3	542	junction_20	98.8976617519343	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGGACTTTTTTGCTCT	NA	False	NA	-7	True	NA	NA	NA	165997103	165915830	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165996866
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056243	chr2	+	1602	2	FSM	ENSMUSG00000042854.10	ENSMUST00000151826.2	4426	2	9	2815	9	775	multi-exon	FALSE	canonical	3	131	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTTAATATTTATTTT	NA	False	NA	NA	False	NA	NA	NA	166635695	166638610	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_166635989_166637301
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056249	chr2	+	5947	39	FSM	ENSMUSG00000074582.11	ENSMUST00000099078.10	8770	39	-51	2874	-51	-2874	multi-exon	TRUE	canonical	3	156	junction_4	19.7687636593819	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAAGTGCGCGGTGTTTTG	NA	False	NA	13	True	AATAAA	-25	NA	166647456	166737098	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_166647756_166668846_166668878_166669461_166669586_166676390_166676538_166677532_166677713_166678121_166678378_166684604_166684674_166687369_166687522_166690786_166690918_166692962_166693198_166693874_166693975_166695174_166695315_166696824_166696934_166698326_166698511_166701182_166701295_166701705_166701912_166702233_166702319_166702444_166702617_166703503_166703656_166705476_166705606_166706612_166706772_166707599_166707748_166708831_166708932_166709065_166709107_166709207_166709378_166710811_166710964_166712129_166712303_166713378_166713540_166715495_166715627_166715782_166715913_166718412_166718549_166720190_166720330_166720437_166720493_166723091_166723207_166727698_166727830_166732188_166732358_166733686_166733826_166735420_166735539_166736531
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056254	chr2	+	3668	25	FSM	ENSMUSG00000002718.15	ENSMUST00000002790.14	3641	25	-27	0	-8	0	multi-exon	FALSE	canonical	3	726	junction_12	67.9214722226255	449	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTTTTTATTGTTTTC	NA	False	NA	37	True	CATAAA	-33	NA	166747951	166788309	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056276	chr2	+	2673	21	FSM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	44	-3	44	3	multi-exon	FALSE	canonical	3	666	junction_12	71.8993045863449	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTTGTCTGTGAATCTG	NA	False	NA	NA	False	NA	NA	NA	166857156	166876870	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056282	chr2	+	2215	8	FSM	ENSMUSG00000017999.17	ENSMUST00000150571.2	2151	8	-64	0	53	0	multi-exon	FALSE	canonical	3	722	junction_7	28.1497453499193	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATAGTATTATTTCCCAT	NA	False	NA	NA	False	NA	NA	NA	166857165	166867733	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056323	chr2	-	4179	9	FSM	ENSMUSG00000017929.14	ENSMUST00000109221.9	4210	9	31	0	31	0	multi-exon	FALSE	canonical	3	218	junction_3	15.1244834622542	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGTAGTCGTCTCTCTG	NA	False	NA	-1	True	AGTAAA	-23	NA	167191072	167140363	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_167143404_167143929_167144032_167146915_167147039_167147579_167147768_167148510_167148628_167149463_167149589_167151142_167151257_167155006_167155142_167190837
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056337	chr2	+	2210	6	FSM	ENSMUSG00000006418.18	ENSMUST00000078050.7	2502	6	292	0	-65	0	multi-exon	FALSE	canonical	3	578	junction_2	31.1088411870323	484	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCAATGTTTTCATTTAA	NA	False	NA	24	True	AATAAA	-25	NA	167345300	167358093	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056366	chr2	-	1844	5	FSM	ENSMUSG00000078923.11	ENSMUST00000151365.8	924	5	1	-921	1	-1	multi-exon	FALSE	canonical	3	48	junction_4	1117.10764924424	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCGGTGGTTTTATTTTA	9427	False	NA	NA	False	AATAAA	-21	NA	167473906	167449764	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167471089_167471209_167473859
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056391	chr2	+	3442	3	FSM	ENSMUSG00000044641.8	ENSMUST00000052125.7	3399	3	-43	0	-43	0	multi-exon	FALSE	canonical	3	144	junction_1	5.5	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTGTTTGAAATTACA	NA	False	NA	NA	False	AATAAA	-22	NA	167922880	167943123	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_167923280_167929261_167929485_167940303
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056407	chr2	+	1981	1	FSM	ENSMUSG00000074576.5	ENSMUST00000099071.5	1973	1	-10	2	-10	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATTGAGTCTTAATTCTA	NA	False	NA	NA	False	TTTAAA	-3	NA	168072531	168074512	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_168072500_168074500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056459	chr2	-	2028	5	NIC	ENSMUSG00000027551.16	novel	2848	9	NA	NA	40	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	9.69535971483266	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGTGAGCGTCATTTCC	NA	False	NA	NA	False	AATAAA	-22	NA	168754513	168735250	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_-_168736454_168741704_168741957_168748003_168748067_168748759_168748910_168754153
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056467	chr2	-	2730	6	FSM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	-292	0	23	0	multi-exon	FALSE	canonical	3	382	junction_1	95.1075181045116	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTGTATTGTATAGTTT	NA	False	NA	0	True	AATAAA	-29	NA	168797484	168767280	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056478	chr2	+	199	1	Antisense	novelGene_ENSMUSG00000027551.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAACCTGGCTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	168792879	168793078	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr2_+_168792900_168793100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056486	chr2	+	2370	1	Intergenic	novelGene_232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCCAGACCGGTGCTGCT	NA	False	NA	NA	False	AAAAAG	-45	NA	168847934	168850304	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_168847900_168850300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056496	chr2	+	1108	1	FSM	ENSMUSG00000084013.2	ENSMUST00000118388.2	846	1	-73	-189	-73	189	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCAGCTGGGTGGTTGTTG	NA	False	NA	NA	False	AATAAA	-36	NA	170126881	170127989	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_170126900_170128000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056518	chr2	-	1860	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	0	2	0	-2	multi-exon	FALSE	canonical	3	1025	junction_8	140.198965759381	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACGTGGGTAATCATTT	NA	False	NA	-4	True	AATATA	-20	NA	172212455	172198111	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056559	chr2	+	2657	7	NNC	ENSMUSG00000028640.12	novel	2838	7	NA	NA	-3914	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	238.451078141129	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTCTGACCCTTTTT	NA	False	NA	25	True	AATAAA	-27	NA	172387598	172400542	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_172387708_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056566	chr2	+	2844	7	FSM	ENSMUSG00000028640.12	ENSMUST00000030391.9	2838	7	-6	0	-6	0	multi-exon	FALSE	canonical	3	551	junction_1	51.676611946046	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTCTGACCCTTTTT	NA	False	NA	25	True	AATAAA	-27	NA	172391506	172400542	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_172391803_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056572	chr2	+	1651	7	NNC	ENSMUSG00000028640.12	novel	2838	7	NA	NA	67	-210	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_6	217.157904658236	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTAAATCCGTTCCCT	NA	False	NA	NA	False	ATTAAA	-19	NA	172391579	172399536	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_172391803_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399124
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056579	chr2	+	655	1	NIC	ENSMUSG00000028640.12	novel	2838	7	NA	NA	67	-3204	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCAAACAACTGCAACCTG	NA	False	NA	NA	False	NA	NA	NA	172391579	172392234	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_172391600_172392200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056615	chr2	+	1727	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173878.8	936	4	30	-821	16	0	multi-exon	FALSE	canonical	0	0	junction_1	369.719713657071	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGTTTGAGGTTTTTCTC	NA	False	NA	NA	False	AATAAA	-23	NA	172863721	172876527	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_172864041_172864584_172864709_172865119_172865175_172875298
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056620	chr2	+	1886	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173720.2	620	4	-182	-1084	16	0	multi-exon	FALSE	canonical	3	8	junction_1	365.954763446097	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGTTTGAGGTTTTTCTC	NA	False	NA	NA	False	AATAAA	-23	NA	172863721	172876527	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_172864200_172864584_172864709_172865119_172865175_172875298
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056622	chr2	+	1974	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173997.2	440	4	-509	-1025	16	0	multi-exon	FALSE	canonical	2	17	junction_1	361.719351001421	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGTTTGAGGTTTTTCTC	NA	False	NA	NA	False	AATAAA	-23	NA	172863721	172876527	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_172864288_172864584_172864709_172865119_172865175_172875298
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056625	chr2	+	2271	3	FSM	ENSMUSG00000027510.18	ENSMUST00000155512.8	2281	3	16	-6	16	0	multi-exon	FALSE	canonical	3	757	junction_2	26	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGTTTGAGGTTTTTCTC	NA	False	NA	NA	False	AATAAA	-23	NA	172863721	172876527	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_172864709_172865119_172865175_172875298
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056635	chr2	+	1947	7	FSM	ENSMUSG00000027519.11	ENSMUST00000029024.10	7155	7	51	5157	-45	1032	multi-exon	FALSE	canonical	3	160	junction_6	19.3512847692917	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGACTAGTCCTTCCTGC	NA	False	NA	8	True	AATAAA	-21	NA	173501603	173543979	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_173501935_173503224_173503305_173529939_173530022_173536902_173536975_173537051_173537159_173537682_173537793_173542814
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056647	chr2	+	2004	6	FSM	ENSMUSG00000054455.6	ENSMUST00000067530.6	7032	6	49	4979	49	1235	multi-exon	FALSE	canonical	3	50	junction_2	5.74804314527997	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTCATTTTGTCACAT	NA	False	NA	21	True	AATAAA	-18	NA	173579352	173621153	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_173579544_173603909_173604063_173613313_173613418_173616186_173616268_173617904_173618082_173619855
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056652	chr2	+	2121	12	FSM	ENSMUSG00000039263.17	ENSMUST00000044415.16	2467	12	-21	367	-21	1	multi-exon	FALSE	canonical	3	214	junction_9	24.2330284822489	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCCGCTCACTTTTT	NA	False	NA	9	True	ATTAAA	-18	NA	173952120	173964496	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_173952366_173952869_173953056_173953406_173953578_173955689_173955780_173956189_173956272_173957843_173957987_173961185_173961264_173962019_173962121_173962336_173962461_173962740_173962918_173963271_173963383_173963883
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056667	chr2	-	628	1	FSM	ENSMUSG00000065521.3	ENSMUST00000083587.3	79	1	68	-617	68	617	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGTTTGGTGTTGTTCTC	NA	False	NA	NA	False	AATAAA	-13	NA	174108850	174108222	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_174108200_174108800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056670	chr2	+	1574	12	ISM	ENSMUSG00000027523.21	ENSMUST00000109096.9	2465	13	986	0	50	0	3prime_fragment	FALSE	canonical	3	9	junction_1	249.01252914145	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	6244	False	NA	15	True	AATAAA	-19	NA	174127098	174188537	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_174127271_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056672	chr2	-	1534	4	Antisense	novelGene_ENSMUSG00000027523.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	3.2659863237109	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCATGCCCTCTAGATTG	525	False	NA	NA	False	NA	NA	NA	174169180	174163257	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr2_-_174163991_174165456_174165759_174167686_174167944_174168938
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056677	chr2	+	2083	12	FSM	ENSMUSG00000027523.21	ENSMUST00000109087.8	1716	12	-335	-32	-252	0	multi-exon	FALSE	canonical	3	678	junction_2	91.1435159288239	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	15	True	AATAAA	-19	NA	174171546	174188537	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_174172228_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056688	chr2	+	2274	15	FSM	ENSMUSG00000016253.13	ENSMUST00000109075.8	2279	15	8	-3	8	3	multi-exon	FALSE	canonical	3	502	junction_12	51.3083913254758	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTACTCATTTCTTAAG	NA	False	NA	43	True	AATAAA	-24	NA	174257604	174269298	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056698	chr2	+	2245	15	NNC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-18	1	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	148.36931650996	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATTTTACTCATTTCTTA	NA	False	NA	41	True	AATAAA	-22	NA	174257625	174269296	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_174257750_174261825_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056710	chr2	+	2877	13	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	502	junction_10	48.356890810813	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGATATTTTACTCATTT	NA	False	NA	37	True	AATAAA	-18	NA	174257642	174269292	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056744	chr2	+	1336	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-93	1179	-15	457	5prime_fragment	FALSE	canonical	3	436	junction_1	382.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174852018	174859862	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_174852115_174858430_174858558_174858749
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056827	chr2	-	1365	3	FSM	ENSMUSG00000078861.9	ENSMUST00000108923.2	1372	3	7	0	7	0	multi-exon	FALSE	canonical	3	51	junction_1	29	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAATTTTAAAAGAATTCA	NA	False	NA	-14	True	NA	NA	NA	177720262	177710282	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_177711409_177711615_177711743_177720150
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056830	chr2	+	1510	1	FSM	ENSMUSG00000061897.6	ENSMUST00000118761.2	456	1	-9	-1045	-9	1045	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAATGTTCCCAATTAC	NA	False	NA	NA	False	ATTAAA	-41	NA	178819208	178820718	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_178819200_178820700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056834	chr2	+	720	3	FSM	ENSMUSG00000039138.2	ENSMUST00000041998.2	737	3	18	-1	18	1	multi-exon	FALSE	canonical	3	53	junction_2	6	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTGGTAATGACCCTT	NA	False	NA	8	True	AATAAA	-23	NA	179056746	179058676	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_179056894_179057552_179057714_179058264
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056839	chr2	+	1041	4	ISM	ENSMUSG00000000305.13	ENSMUST00000108911.2	1208	6	337630	0	3089	0	3prime_fragment	FALSE	canonical	3	23	junction_2	3.09120616516523	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGGCTTGTTCTCCGAC	7091	False	NA	NA	False	NA	NA	NA	179422044	179489497	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_179422274_179439250_179439422_179484761_179484918_179489012
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056841	chr2	+	2857	14	ISM	ENSMUSG00000000305.13	ENSMUST00000000314.13	6388	16	337821	3173	3089	51	3prime_fragment	FALSE	canonical	3	15	junction_11	4.62690868979156	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTTTGGTACATGACAGA	7091	False	NA	NA	False	NA	NA	NA	179422044	179537993	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr2_+_179422274_179439250_179439422_179484761_179484918_179489012_179489158_179501909_179502083_179515864_179516003_179523602_179523789_179527646_179527901_179528512_179528656_179530881_179531116_179532535_179532770_179534984_179535125_179535820_179535986_179537504
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056854	chr2	+	2709	10	NIC	ENSMUSG00000039108.15	novel	2566	9	NA	NA	-54	0	combination_of_known_junctions	TRUE	canonical	3	24	junction_3	16.1176232049821	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTGTCCGTCACCTGT	NA	False	NA	19	True	AATAAA	-20	NA	179666725	179677258	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_179667106_179668427_179668592_179669692_179669829_179670750_179670868_179673153_179673322_179673586_179673665_179673853_179674016_179674293_179674445_179675478_179675664_179676090
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056889	chr2	+	1557	9	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_3	58.60873974929	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGATGTGTCTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	179712386	179727693	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_179712409_179713586_179713680_179714932_179715027_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056908	chr2	-	194	1	Intergenic	novelGene_233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGGCTGGTGAGATGGC	NA	False	NA	NA	False	NA	NA	NA	179718955	179718761	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_-_179718800_179719000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056916	chr2	+	2797	14	FSM	ENSMUSG00000039050.9	ENSMUST00000040668.9	2805	14	10	-2	10	2	multi-exon	TRUE	canonical	3	166	junction_6	20.3809866146027	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGGTTGAAGGTTTGATT	NA	False	NA	12	True	ATTAAA	-18	NA	179761108	179804475	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_179761263_179778771_179778906_179780005_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821_179800913_179803281
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056960	chr2	+	3002	12	FSM	ENSMUSG00000038963.16	ENSMUST00000038259.13	3010	12	-6	14	-6	1	multi-exon	FALSE	canonical	3	51	junction_3	7.21568539381252	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCTTGTGTGATGTTTTA	NA	False	NA	11	True	AATATA	-20	NA	180098031	180116646	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_180098167_180105733_180106622_180107389_180107481_180108850_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114453_180114627_180114895_180114961_180115306_180115456_180115896
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056972	chr2	+	1514	5	FSM	ENSMUSG00000027569.16	ENSMUST00000029085.9	1510	5	13	-17	-1	0	multi-exon	TRUE	canonical	3	47	junction_3	10.4253297309965	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCTTGGAAGTTGTATG	NA	False	NA	NA	False	ATTAAA	-20	NA	180224517	180228097	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_180224749_180225193_180225316_180226198_180226281_180226589_180226665_180227093
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056978	chr2	+	2274	7	FSM	ENSMUSG00000049401.11	ENSMUST00000029087.4	2449	7	174	1	-43	-1	multi-exon	FALSE	canonical	3	62	junction_6	11.4370256428652	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGCCGTGTTCTGTTT	NA	False	NA	21	True	AATAAA	-21	NA	180231211	180237628	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000056983	chr2	+	2193	8	NNC	ENSMUSG00000049401.11	novel	2449	7	NA	NA	-20	-5	at_least_one_novel_splicesite	TRUE	canonical	3	58	junction_7	13.998542198153	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTGGCCGTGTTCT	NA	False	NA	17	True	AATAAA	-17	NA	180231234	180237624	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000_180236947_180237000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057004	chr2	+	2238	1	Intergenic	novelGene_234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCTGAAAGCTCTTT	NA	False	NA	22	True	AGTAAA	-23	NA	180361154	180363392	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr2_+_180361200_180363400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057060	chr2	+	777	4	FSM	ENSMUSG00000016344.15	ENSMUST00000146089.8	750	4	-25	-2	-14	2	multi-exon	TRUE	canonical	3	258	junction_1	285.921123544395	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGTATGTTTGAAACAT	3411	False	NA	3	True	AATAAA	-19	NA	180829114	180830299	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_180829248_180829457_180829680_180829796_180829894_180829974
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057083	chr2	+	4439	34	FSM	ENSMUSG00000038685.19	ENSMUST00000054622.15	4401	34	-38	0	-15	0	multi-exon	FALSE	canonical	3	57	junction_31	50.0269348938753	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961516	180998409	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057106	chr2	-	1758	8	FSM	ENSMUSG00000038671.16	ENSMUST00000127988.8	2447	8	32	657	-11	-605	multi-exon	FALSE	canonical	3	258	junction_2	23.8627025172878	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTAGATGGTGGTTCCC	6108	False	NA	-6	True	AATAAA	-27	NA	181007165	181000282	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057117	chr2	+	4483	10	NIC	ENSMUSG00000027582.17	novel	3666	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	53	junction_7	40.6748625620843	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGGCTCTTGGTTGCTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	181007197	181025421	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167_181024108_181024279_181024338_181024408_181024497_181024591_181024954_181025050
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057182	chr2	+	3043	21	FSM	ENSMUSG00000002455.15	ENSMUST00000002529.7	3054	21	13	-2	13	2	multi-exon	FALSE	canonical	3	340	junction_3	47.7921280128851	577	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGGCTTGGGCCTCACT	2507	False	NA	30	True	ATTAAA	-18	NA	181243124	181297455	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296756_181297214
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057215	chr3	+	3251	9	FSM	ENSMUSG00000043542.13	ENSMUST00000051064.9	3292	9	-32	73	-32	-73	multi-exon	FALSE	canonical	3	121	junction_7	36.9256008752735	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGCTTGTTATGTTTAT	NA	False	NA	-63	True	AATAAA	-16	NA	7568510	7618823	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7593644_7593745_7604135_7604244_7616442
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057254	chr3	+	719	4	FSM	ENSMUSG00000027533.11	ENSMUST00000029046.9	987	4	0	268	0	4	multi-exon	FALSE	canonical	3	202	junction_1	88.411914732499	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATATGTGTGTGGGTTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	10077607	10081399	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_10077779_10080030_10080204_10080531_10080634_10081126
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057259	chr3	+	196	1	Intergenic	novelGene_235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGTTGACTCTTAGAGTA	NA	False	NA	NA	False	NA	NA	NA	10285388	10285584	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_10285400_10285600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057270	chr3	-	1609	8	FSM	ENSMUSG00000039795.15	ENSMUST00000037839.12	1610	8	1	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	173.164190104923	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTGCATTTGATCTATAA	NA	False	NA	-1	True	AATAAA	-45	NA	10416376	10405012	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416301
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057276	chr3	-	1874	7	NIC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	0	-23	intron_retention	FALSE	canonical	3	120	junction_5	243.390404266251	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTCCTGTAACAAAGCGA	NA	False	NA	-26	True	AATAAA	-20	NA	10416376	10405037	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411298_10412224_10412472_10413569_10413613_10416301
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057284	chr3	+	280	1	Intergenic	novelGene_236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGCTCTCCATTTCTAG	NA	False	NA	NA	False	AATAAA	-27	NA	10418042	10418322	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_10418000_10418300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057307	chr3	-	864	2	FSM	ENSMUSG00000078784.9	ENSMUST00000190064.2	508	2	-13	-343	-2	343	multi-exon	FALSE	canonical	3	4849	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGATTAAGTAGATCATAC	NA	False	NA	NA	False	NA	NA	NA	14676316	14673900	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_14674718_14676269
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057314	chr3	+	1774	7	FSM	ENSMUSG00000027562.13	ENSMUST00000029078.9	1788	7	14	0	14	0	multi-exon	FALSE	canonical	3	122	junction_4	9.4339811320566	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGTGCCTGATTGTCT	NA	False	NA	11	True	AATAAA	-14	NA	14951501	14965830	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057318	chr3	+	1451	1	Intergenic	novelGene_237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGCACAGGCATGGAACT	NA	False	NA	NA	False	AATAAA	-42	NA	15685326	15686777	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_15685300_15686800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057325	chr3	-	2945	7	FSM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	-14	742	-14	-742	multi-exon	TRUE	canonical	3	251	junction_6	16.1761140780679	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTTATTGTATTTTTAAA	NA	False	NA	-6	True	AATAAA	-20	NA	19217243	19186307	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057329	chr3	-	1645	7	NNC	ENSMUSG00000027599.10	novel	3673	7	NA	NA	-11	-2021	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	91.40280204798	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTCTACAAAAAGCTGTACA	NA	False	NA	NA	False	AAAAAG	-13	NA	19217240	19187586	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_19188370_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057374	chr3	-	1950	1	FSM	ENSMUSG00000069083.5	ENSMUST00000091289.5	1590	1	-128	-232	-128	232	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAAAGTTCCATTCTTTA	NA	False	NA	NA	False	AATAAA	-1	NA	25266897	25264947	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_25264900_25266900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057387	chr3	-	4123	25	NNC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	161.977278927907	130	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTATGTGTCCTGTCAT	1808	False	NA	NA	False	AATAAA	-20	NA	27208029	27151370	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193158_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057397	chr3	-	4083	25	NNC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	215.218622696911	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTATGTGTCCTGTCA	1852	False	NA	NA	False	AATAAA	-19	NA	27207985	27151371	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193158_27193279_27193675_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057425	chr3	+	531	4	FSM	ENSMUSG00000039221.11	ENSMUST00000194649.2	525	4	-6	0	-6	0	multi-exon	FALSE	canonical	3	3779	junction_1	1855.270390596	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGGTTCATCAGTGTGT	NA	False	NA	19	True	AATAAA	-24	NA	28859611	28861573	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_28859693_28860651_28860742_28860885_28861008_28861335
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057434	chr3	+	552	4	FSM	ENSMUSG00000039221.11	ENSMUST00000193168.2	552	4	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_2	3246.42750659175	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859658	28861571	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_28859693_28860648_28860742_28860818_28861008_28861335
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057443	chr3	-	229	1	Intergenic	novelGene_238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGGCAGAGAAAGGCAGG	NA	False	NA	NA	False	NA	NA	NA	29040602	29040373	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_-_29040400_29040600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057455	chr3	+	197	1	Intergenic	novelGene_239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCCCCTTCCTTAGATC	NA	False	NA	4	True	NA	NA	NA	30676588	30676785	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_30676600_30676800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057500	chr3	+	4721	18	FSM	ENSMUSG00000037643.15	ENSMUST00000108249.9	4708	18	-13	0	-13	0	multi-exon	FALSE	canonical	3	904	junction_14	67.823095759034	409	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGTTCGTGGTGGCGCACG	NA	False	NA	NA	False	NA	NA	NA	31049882	31107108	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_31050235_31072698_31072821_31079278_31079369_31080401_31080453_31083634_31083721_31085232_31085374_31087326_31087379_31088647_31088707_31091994_31092172_31092598_31092697_31093177_31093265_31093516_31093653_31095590_31095679_31097839_31097966_31099030_31099111_31100621_31100712_31101120_31101237_31104338
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057510	chr3	+	191	1	Intergenic	novelGene_240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATATAACACTTTGACCTG	NA	False	NA	NA	False	NA	NA	NA	31088783	31088974	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_31088800_31089000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057552	chr3	+	1852	14	FSM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	163	-5	-95	5	multi-exon	FALSE	canonical	3	1234	junction_9	101.670310666418	320	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATTTGTCTGTGTGACT	NA	False	NA	28	True	AATAAA	-25	NA	32762818	32781127	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057597	chr3	+	3069	15	ISM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	-18	3583	-8	-3575	5prime_fragment	FALSE	canonical	3	1060	junction_7	79.2243005391551	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGCATTCTTTCCAAAA	4841	False	NA	11	True	AATAAA	-20	NA	34074238	34119911	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057618	chr3	+	581	1	ISM	ENSMUSG00000027680.16	ENSMUST00000200392.5	3014	16	49285	349	22761	-349	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGATTTTTAACTTTCT	NA	False	NA	11	True	AATAAA	-15	NA	34123541	34124122	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_+_34123500_34124100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057626	chr3	+	2469	1	FSM	ENSMUSG00000074637.8	ENSMUST00000099151.6	2057	1	-412	0	-412	0	mono-exon	FALSE	NA	NA	NA	NA	NA	286	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGCCTGAGTCTTTCATT	4195	False	NA	19	True	AATAAA	-24	NA	34704141	34706610	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_34704100_34706600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057634	chr3	+	4911	30	NNC	ENSMUSG00000037400.18	novel	4868	30	NA	NA	-11	0	intron_retention	FALSE	canonical	0	0	junction_18	90.3157363007322	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTTGTTGCATGTTATC	NA	False	NA	11	True	AATAAA	-17	NA	35808243	35910425	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_35808560_35832173_35832291_35836660_35836751_35838655_35838737_35842235_35842344_35842574_35842704_35843706_35843811_35849907_35849956_35852742_35852808_35854632_35854715_35859882_35860034_35860916_35861115_35863505_35863746_35864269_35864446_35864794_35864864_35866211_35866286_35866361_35866466_35868192_35868379_35874057_35874262_35881093_35881248_35882749_35882853_35885514_35885661_35887069_35887130_35888443_35888572_35889387_35889527_35891107_35891174_35891634_35891739_35893197_35893364_35903582_35903714_35909253
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057648	chr3	-	2992	19	FSM	ENSMUSG00000027709.10	ENSMUST00000029259.10	2455	19	0	-537	0	16	multi-exon	FALSE	canonical	3	210	junction_8	26.6884748788316	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGCCGTGGCCTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	36054827	36013444	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057656	chr3	+	2979	18	FSM	ENSMUSG00000027710.15	ENSMUST00000011492.15	3930	18	21	930	21	551	multi-exon	FALSE	canonical	3	170	junction_2	13.4755962948483	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTTGGGAGGGGGTT	NA	False	NA	NA	False	NA	NA	NA	36120148	36146072	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_36120420_36123858_36123953_36127655_36127758_36128498_36128606_36129391_36129493_36130124_36130204_36130870_36131046_36132586_36132661_36134369_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141868_36141949_36142636_36142764_36142963_36143042_36143480_36143610_36144230_36144304_36144979
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057682	chr3	+	2453	2	FSM	ENSMUSG00000051444.10	ENSMUST00000057975.8	2433	2	-20	0	-20	0	multi-exon	FALSE	canonical	3	15	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGCCATTCTGTTTTTT	1231	False	NA	7	True	AATAAA	-19	NA	37366682	37375599	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_37366735_37373198
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057715	chr3	+	519	1	FSM	ENSMUSG00000100755.2	ENSMUST00000116115.3	425	1	-30	-64	-30	64	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGTGGAATAGGATTG	7634	False	NA	NA	False	AATAAA	-30	NA	37768858	37769377	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_37768900_37769400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057718	chr3	+	360	2	Genic_Genomic	ENSMUSG00000100755.2	novel	425	1	NA	NA	-29	64	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGTGGAATAGGATTG	7635	False	NA	NA	False	AATAAA	-30	NA	37768859	37769377	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr3_+_37768897_37769054
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057745	chr3	-	1213	4	Fusion	ENSMUSG00000105260.2_ENSMUSG00000097639.3	novel	504	2	NA	NA	-1	2	multi-exon	FALSE	canonical	3	17	junction_1	26.5455583227527	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCTCTCCTTCGTGTTT	NA	False	NA	-8	True	AGTAAA	-18	NA	41447628	41432009	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr3_-_41432596_41436231_41436380_41436506_41436880_41447522
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057750	chr3	-	552	2	NNC	ENSMUSG00000097639.3	novel	986	2	NA	NA	0	-1438	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAGGACTCTTAACTGTGC	NA	False	NA	NA	False	TTTAAA	-5	NA	41447627	41439896	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_41440396_41447574
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057772	chr3	+	2840	11	NIC	ENSMUSG00000025764.15	novel	5481	11	NA	NA	1	202	combination_of_known_junctions	FALSE	canonical	3	36	junction_4	226.907668446882	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAAATGAAGTAACTTT	NA	False	NA	NA	False	TATAAA	-8	NA	41510166	41568695	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548237_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057785	chr3	+	3188	11	NNC	ENSMUSG00000025764.15	novel	4790	11	NA	NA	83	202	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	239.871632336965	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAAATGAAGTAACTTT	NA	False	NA	NA	False	TATAAA	-8	NA	41519437	41568695	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_41519838_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057815	chr3	+	193	1	Intergenic	novelGene_241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCCAGGGTCAGGGGGAA	NA	False	NA	NA	False	NA	NA	NA	51251813	51252006	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_51251800_51252000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057819	chr3	+	199	1	Intergenic	novelGene_242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTCACAGTTGGACTTA	NA	False	NA	NA	False	NA	NA	NA	51287984	51288183	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_51288000_51288200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057848	chr3	+	197	1	Intergenic	novelGene_243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTAAAAACATTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	51509819	51510016	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_51509800_51510000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057855	chr3	+	2563	3	FSM	ENSMUSG00000044167.7	ENSMUST00000053764.7	8665	3	-3	6105	-3	-6105	multi-exon	FALSE	canonical	3	61	junction_1	0	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTCCTTTCCTCAGACT	NA	False	NA	NA	False	NA	NA	NA	52175753	52254537	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_52176844_52252459_52253812_52254416
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057859	chr3	-	2923	19	FSM	ENSMUSG00000027742.14	ENSMUST00000036665.10	3182	19	12	247	-7	0	multi-exon	TRUE	canonical	3	106	junction_7	14.5610676585896	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTTGTAGTATTTTTATA	NA	False	NA	-1	True	ATTAAA	-18	NA	52924646	52889542	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_52890613_52893821_52893902_52896530_52896585_52897379_52897488_52900175_52900344_52900860_52900993_52903428_52903547_52905677_52905770_52907901_52907967_52909666_52909759_52909833_52909963_52914666_52914761_52916473_52916545_52916893_52916977_52917996_52918109_52920326_52920386_52921235_52921308_52922889_52923034_52924466
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057867	chr3	-	450	2	Antisense	novelGene_ENSMUSG00000048332.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	19	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	53026128	53020956	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr3_-_53021169_53025890
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057880	chr3	+	1529	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	-24	-17	-24	17	mono-exon	FALSE	NA	NA	NA	NA	NA	236	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCAACATGCTTAGTCAT	5416	False	NA	NA	False	NA	NA	NA	54388834	54390363	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_54388800_54390400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057885	chr3	+	2880	27	FSM	ENSMUSG00000027751.14	ENSMUST00000197502.5	2751	27	-2	-127	-2	0	multi-exon	FALSE	canonical	3	259	junction_20	89.4210256174979	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600225	54636184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057894	chr3	+	2835	27	NIC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_23	119.269081933775	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600234	54636184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629977_54630062_54633390_54633497_54634989_54635118_54635764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057895	chr3	+	3111	27	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_6	104.992335589529	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600234	54636184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057931	chr3	+	2851	27	NIC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	134.487197208574	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCGTGGTGTCTGTTCATT	NA	False	NA	34	True	TATAAA	-45	NA	54600278	54636183	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_+_54600303_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057939	chr3	+	3063	27	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_1	142.137304440493	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600278	54636184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_54600316_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629977_54630062_54633390_54633497_54634989_54635118_54635764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057940	chr3	+	3102	27	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_1	128.485425001709	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600278	54636184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_54600316_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057942	chr3	+	3099	27	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_1	119.346079476414	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600278	54636184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_54600316_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057946	chr3	+	2829	27	NIC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	147.45030252928	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600278	54636184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_+_54600316_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629977_54630062_54633390_54633497_54634989_54635118_54635764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057948	chr3	+	2826	27	NIC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	139.954599570105	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600278	54636184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_+_54600316_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629977_54630062_54633390_54633497_54634989_54635118_54635764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057949	chr3	+	2862	27	NIC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	116.599933013266	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600278	54636184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_+_54600316_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057968	chr3	+	2967	26	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	127.207521790183	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600278	54636184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_54600524_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000057969	chr3	+	2964	26	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	117.502789754116	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600278	54636184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_54600524_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058030	chr3	+	2345	11	NNC	ENSMUSG00000027794.5	novel	2364	11	NA	NA	11	-3	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	76.3681216215248	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAGTGTGCAAGGAATCT	NA	False	NA	17	True	AATAAA	-19	NA	55089459	55117375	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_55089536_55096546_55096757_55097730_55097793_55097874_55097980_55099659_55099757_55102493_55102605_55104147_55104296_55104418_55104508_55111754_55111877_55115013_55115271_55116307
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058033	chr3	-	1913	7	FSM	ENSMUSG00000027803.15	ENSMUST00000029380.14	4697	7	-19	2803	-19	-2670	multi-exon	TRUE	canonical	3	192	junction_3	19.06494747494	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTGTATAGATAGTAATT	NA	False	NA	NA	False	TTTAAA	-33	NA	57483268	57365872	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_57366532_57369939_57370053_57370863_57370986_57384777_57384978_57409152_57409290_57482243_57482679_57483021
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058057	chr3	+	4659	3	FSM	ENSMUSG00000027806.10	ENSMUST00000199164.2	4659	3	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	10.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGGCTCTATATGTGTT	NA	False	NA	18	True	ATTAAA	-18	NA	58322140	58369141	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_58325035_58366751_58366804_58367428
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058061	chr3	-	2460	3	FSM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	-1	2152	-1	-2152	multi-exon	FALSE	canonical	3	847	junction_1	36.5	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTGCAGAGTTTTTAT	NA	False	NA	18	True	AATAAA	-36	NA	58433314	58429389	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_58431290_58432503_58432580_58432830
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058090	chr3	+	1834	1	Genic_Genomic	ENSMUSG00000075700.11	novel	NA	NA	NA	NA	14604	2	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGCTTTGTGAAAATGAT	NA	False	NA	17	True	AATAAA	-20	NA	58498722	58500556	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr3_+_58498700_58500600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058100	chr3	+	1739	2	FSM	ENSMUSG00000027694.10	ENSMUST00000193411.2	182	2	-14	-1543	-14	1270	multi-exon	FALSE	canonical	3	1840	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGAGACTACTTCTTCTT	NA	False	NA	NA	False	AATAAA	-35	NA	60784420	60786278	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_60784468_60784586
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058125	chr3	-	1564	5	NNC	ENSMUSG00000048581.13	novel	1640	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	21.2294017814916	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTTCTGAGATCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	63836813	63822104	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_63823160_63827617_63827783_63832754_63832903_63834684_63834745_63836677
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058132	chr3	-	3002	6	FSM	ENSMUSG00000027822.17	ENSMUST00000029402.15	3150	6	148	0	46	0	multi-exon	FALSE	canonical	3	46	junction_5	11.3666177907063	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAAGCTGTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-24	NA	63872041	63849750	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_63850838_63851986_63852203_63854989_63855108_63855492_63855678_63861234_63861426_63870836
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058142	chr3	-	2954	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	3	0	3	0	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTTTCTGTAATTCT	2719	False	NA	-1	True	ATTAAA	-20	NA	65300041	65287075	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058192	chr3	+	2981	16	FSM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	30	0	30	0	multi-exon	TRUE	canonical	3	661	junction_4	69.2886394407882	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAGGATAAATGACTGC	NA	False	NA	19	True	AATAAA	-20	NA	67490103	67511570	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058196	chr3	+	2054	8	FSM	ENSMUSG00000027777.16	ENSMUST00000182532.8	2059	8	-15	20	-15	-2	multi-exon	FALSE	canonical	3	12	junction_1	163.233149894529	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACGTCCTTTTGCTCAC	NA	False	NA	19	True	AATAAA	-21	NA	68375500	68533794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_68375563_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058241	chr3	-	2987	3	NNC	ENSMUSG00000034317.15	novel	2939	3	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	297.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGACATAGTTTTCTTA	NA	False	NA	-6	True	AATAAA	-26	NA	68952071	68942620	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_68945342_68951100_68951176_68951880
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058244	chr3	-	3739	17	FSM	ENSMUSG00000027782.11	ENSMUST00000194558.6	3726	17	-13	0	8	0	multi-exon	FALSE	canonical	3	213	junction_6	26.0353575690829	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTGTGGTGTGTGGAT	NA	False	NA	-1	True	AATAAA	-33	NA	69034438	68979553	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_68981521_68984082_68984178_68986709_68986873_68988491_68988564_68991382_68991488_68993019_68993149_68994789_68994922_68997108_68997154_68997240_68997411_69000142_69000230_69001985_69002072_69002852_69002949_69008384_69008438_69008534_69008565_69008673_69008764_69009536_69009582_69034064
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058255	chr3	-	188	1	Intergenic	novelGene_244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGCCCTTCCCTATAAAA	NA	False	NA	NA	False	NA	NA	NA	69606423	69606235	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_-_69606200_69606400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058265	chr3	-	375	2	NNC	ENSMUSG00000103396.2	novel	223	2	NA	NA	7	162	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAACCACTAATGATACAG	NA	False	NA	NA	False	AATAAA	-43	NA	71372995	71372399	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_71372621_71372841
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058281	chr3	-	351	1	Genic_Genomic	ENSMUSG00000099370.2	novel	NA	NA	NA	NA	-24	-7565	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATACCGGAGAAGGTGTG	NA	False	NA	NA	False	NA	NA	NA	75563062	75562711	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr3_-_75562700_75563100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058283	chr3	+	199	1	Intergenic	novelGene_245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCCAAGCTTCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	76831800	76831999	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_76831800_76832000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058286	chr3	+	196	1	Intergenic	novelGene_246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTAGAGCTAATTGGACA	NA	False	NA	NA	False	NA	NA	NA	79320219	79320415	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_79320200_79320400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058301	chr3	-	2379	13	FSM	ENSMUSG00000027809.15	ENSMUST00000029386.14	2377	13	-16	14	-16	1	multi-exon	FALSE	canonical	3	73	junction_10	10.8790701195767	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCATTTATTTATTTAC	3568	False	NA	-14	True	AATAAA	-16	NA	79536186	79511108	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_79511473_79512211_79512434_79512936_79513120_79517105_79517275_79519218_79519363_79520928_79521070_79522306_79522454_79523230_79523309_79525613_79525733_79526145_79526228_79530044_79530275_79530847_79530986_79535824
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058309	chr3	+	1965	2	FSM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	5	0	5	0	multi-exon	FALSE	canonical	3	150	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGTTTCTTTAGACTCA	4374	False	NA	NA	False	AATAAA	-14	NA	79536390	79540127	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_79536664_79538435
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058338	chr3	+	209	1	Intergenic	novelGene_247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAAAACTGTGAGTTAGTG	NA	False	NA	NA	False	NA	NA	NA	83737582	83737791	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_83737600_83737800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058372	chr3	+	1869	4	ISM	ENSMUSG00000028086.16	ENSMUST00000151410.2	4348	13	-886	73603	-676	575	5prime_fragment	FALSE	canonical	3	30	junction_3	8.17856276425687	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTACCTTTAGTCCCCT	NA	False	NA	NA	False	NA	NA	NA	84721898	84811386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_+_84723077_84771270_84771319_84771443_84771508_84810807
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058384	chr3	+	2019	13	FSM	ENSMUSG00000028085.13	ENSMUST00000127348.8	3469	13	-8	1458	-8	6	multi-exon	FALSE	canonical	3	140	junction_6	19.0283049399806	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCCGTGGGTGCTTTGTA	NA	False	NA	15	True	AATAAA	-19	NA	85481417	85561471	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587_85559723_85561030
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058389	chr3	+	485	1	FSM	ENSMUSG00000044330.9	ENSMUST00000054148.9	288	1	-76	-121	-76	121	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCCAAGCTAATCACCAACA	NA	False	NA	NA	False	AATAAA	-45	NA	85823013	85823498	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_85823000_85823500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058393	chr3	+	206	1	Intergenic	novelGene_248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATAACTTGCTGGTCTTAC	7330	False	NA	NA	False	NA	NA	NA	86024568	86024774	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_86024600_86024800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058412	chr3	-	3536	16	FSM	ENSMUSG00000028078.15	ENSMUST00000195561.6	3486	16	-44	-6	0	0	multi-exon	FALSE	canonical	3	155	junction_11	36.9688156874593	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGGGTGGGTGAAATT	NA	False	NA	-3	True	AATAAA	-20	NA	86827686	86693459	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_86694720_86699301_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058434	chr3	-	1870	5	ISM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	362	0	-125	0	3prime_fragment	FALSE	canonical	3	57	junction_4	12.9687123493429	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCAGAGGTTTTACTT	NA	False	NA	NA	False	AATAAA	-20	NA	86906386	86903140	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058442	chr3	-	3385	16	FSM	ENSMUSG00000041734.16	ENSMUST00000159976.8	7236	16	172	3679	22	2356	multi-exon	FALSE	canonical	3	15	junction_15	12.9144191593049	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTAGGGGTTTCCCCCAC	NA	False	NA	NA	False	AATAAA	-20	NA	87081835	86989578	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_86990928_86991173_86991252_86992111_86992252_86992388_86992497_86993688_86993888_86995472_86995574_86995665_86995793_86996457_86996586_86996788_86996938_86997102_86997209_86997764_86997916_86999411_86999570_87002943_87003094_87005048_87005214_87048283_87048427_87081702
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058456	chr3	+	206	1	Intergenic	novelGene_249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCACAGCGGGGCTGGAGA	NA	False	NA	NA	False	NA	NA	NA	87789286	87789492	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_87789300_87789500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058462	chr3	+	2274	6	FSM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	-29	0	-29	0	multi-exon	FALSE	canonical	3	2720	junction_5	175.133549041867	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACTAATTCTTTTCAA	NA	False	NA	25	True	AATAAA	-21	NA	87813598	87823439	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_87814022_87820397_87820475_87820619_87820759_87821358_87821545_87821779_87821998_87822208
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058470	chr3	+	641	1	ISM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	9171	0	1531	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACTAATTCTTTTCAA	NA	False	NA	25	True	AATAAA	-21	NA	87822798	87823439	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_+_87822800_87823400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058471	chr3	+	1235	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	-14	5	-14	5	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAGTCTTAAAAGCTTTA	NA	False	NA	21	True	AATAAA	-23	NA	87826798	87830974	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058487	chr3	-	2157	7	FSM	ENSMUSG00000004896.17	ENSMUST00000159091.9	3197	7	-17	1057	0	0	multi-exon	FALSE	canonical	3	63	junction_5	23.5849528301415	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGTAATTTTTATTTC	9443	False	NA	-22	True	TATAAA	-27	NA	87837451	87830964	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058499	chr3	+	2992	4	FSM	ENSMUSG00000048039.9	ENSMUST00000055984.7	2893	4	-97	-2	-97	2	multi-exon	FALSE	canonical	3	350	junction_2	9.0921211313239	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGTATGTGTGTGCTT	NA	False	NA	33	True	NA	NA	NA	87837523	87847995	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_87837919_87838637_87839583_87845880_87846082_87846544
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058513	chr3	+	902	4	FSM	ENSMUSG00000004885.6	ENSMUST00000005019.6	931	4	29	0	29	0	multi-exon	FALSE	canonical	3	31	junction_1	3.29983164553722	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCTGTGGCTCCCTGAG	8860	False	NA	8	True	ATTAAA	-19	NA	87856001	87860683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_87856218_87859421_87859601_87859784_87859902_87860293
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058529	chr3	-	817	5	NIC	ENSMUSG00000028070.8	novel	908	6	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	382.924519324631	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965825	87963826	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_-_87964084_87964292_87964441_87965227_87965339_87965436_87965546_87965633
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058530	chr3	-	783	5	NIC	ENSMUSG00000028070.8	novel	908	6	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	75	junction_1	350.462908165757	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965825	87963826	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_-_87964084_87965030_87965145_87965227_87965339_87965436_87965546_87965633
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058540	chr3	+	5731	38	NNC	ENSMUSG00000028068.15	novel	5756	38	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_28	43.5551253107223	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGCGTTGTTGCTATAG	NA	False	NA	19	True	AATAAA	-20	NA	87989306	88028355	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_87989400_87991237_87991326_87993456_87993614_87994584_87994663_87996200_87996278_87996967_87997036_87997123_87997238_87997444_87997624_87998042_87998122_87998777_87998942_87999718_87999807_88001890_88002055_88004208_88004367_88005624_88005747_88006163_88006328_88007932_88008024_88008734_88008903_88008984_88009125_88009203_88009375_88011366_88011451_88011607_88011680_88011772_88011843_88014818_88015028_88015667_88015821_88016113_88016278_88016578_88016804_88017301_88017443_88019610_88019700_88019904_88020138_88020406_88020540_88020653_88020757_88021230_88021358_88022210_88022299_88023210_88023424_88024086_88024254_88024505_88024608_88024982_88025092_88027469
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058598	chr3	+	4461	22	FSM	ENSMUSG00000001415.11	ENSMUST00000001451.11	4448	22	-12	-1	-12	1	multi-exon	FALSE	canonical	3	253	junction_5	44.0686436309756	309	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTGCTGTGTCTTCTG	NA	False	NA	14	True	AATAAA	-21	NA	88243554	88269646	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058632	chr3	-	688	5	NNC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	6.26498204307083	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGGCTGGAGTCTGTC	7128	False	NA	NA	False	AATAAA	-15	NA	88280050	88275926	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88279858
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058643	chr3	-	3436	4	FSM	ENSMUSG00000050144.14	ENSMUST00000193433.6	3429	4	-4	-3	0	3	multi-exon	FALSE	canonical	0	0	junction_3	28.7672653471886	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCTTTTGGGTTTTGT	4093	False	NA	0	True	ATTAAA	-22	NA	88332419	88317801	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332152
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058652	chr3	-	2348	4	FSM	ENSMUSG00000050144.14	ENSMUST00000195657.6	3504	4	0	1156	0	-1156	multi-exon	FALSE	canonical	3	7	junction_3	25.4689353265241	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGTCAGGAAGGCACCCA	4093	False	NA	NA	False	NA	NA	NA	88332419	88318961	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332080
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058661	chr3	-	1976	5	FSM	ENSMUSG00000028064.18	ENSMUST00000156108.8	2108	5	135	-3	135	0	multi-exon	TRUE	canonical	3	30	junction_4	4.71036092035419	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTATGGCGTGCTGTGCTG	NA	False	NA	NA	False	ATTAAA	-23	NA	88348311	88343265	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058678	chr3	-	615	4	FSM	ENSMUSG00000028062.16	ENSMUST00000029698.15	668	4	54	-1	54	1	multi-exon	FALSE	canonical	3	2467	junction_3	160.918889161244	486	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCACCTGCTTTCT	1031	False	NA	-5	True	AATAAA	-15	NA	88460277	88457124	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460102
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058712	chr3	+	1367	8	NIC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	-75	1	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	2280.3080618949	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGTCTTGCGTCAAC	NA	False	NA	16	True	AATAAA	-18	NA	88483107	88495727	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_+_88483288_88483806_88483911_88484401_88484504_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058723	chr3	+	1145	7	NIC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	-22	-3	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	2189.39274305304	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	NA	False	NA	12	True	AATAAA	-14	NA	88483223	88495723	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_+_88483288_88483806_88483911_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058759	chr3	+	4289	22	FSM	ENSMUSG00000028059.17	ENSMUST00000029694.14	4300	22	11	0	-8	0	multi-exon	FALSE	canonical	3	163	junction_1	44.2621032808889	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGGAAATGAAGCGCCGT	NA	False	NA	15	True	ATTAAA	-17	NA	88528423	88555359	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_88528629_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058773	chr3	+	3007	14	FSM	ENSMUSG00000028060.15	ENSMUST00000029696.11	2981	14	-17	-9	-17	9	multi-exon	FALSE	canonical	3	322	junction_11	33.2047619027415	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCATTGTTGTTTTTTTG	-9	True	NA	25	True	AATAAA	-25	NA	88593092	88620240	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617136_88617250_88618067_88618160_88618936
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058797	chr3	+	842	4	NIC	ENSMUSG00000054199.19	novel	7587	33	NA	NA	-10	8233	combination_of_known_junctions	FALSE	canonical	3	78	junction_3	45.1540572804802	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTACTAAGAGGAAACGAGA	NA	False	NA	NA	False	GATAAA	-19	NA	88742524	88761955	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_+_88742597_88744296_88744828_88753694_88753887_88761908
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058807	chr3	-	1840	14	FSM	ENSMUSG00000068922.15	ENSMUST00000126245.2	1875	14	39	-4	-29	4	multi-exon	FALSE	canonical	3	676	junction_13	37.3331396162909	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCATTTGTACATTTAAAAA	NA	False	NA	-3	True	NA	NA	NA	88821267	88816917	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058812	chr3	-	1781	14	NNC	ENSMUSG00000068922.15	novel	1875	14	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	3	215	junction_1	142.181149559078	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTAGGGACCTGTTACA	NA	False	NA	-30	True	AATAAA	-21	NA	88821238	88816944	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_88817215_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058863	chr3	-	2104	10	ISM	ENSMUSG00000059743.13	ENSMUST00000196709.5	1382	11	3	0	3	0	intron_retention	FALSE	canonical	3	144	junction_9	697.876461528511	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009192	89000894	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89008227
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058880	chr3	+	2156	13	FSM	ENSMUSG00000068917.13	ENSMUST00000121931.8	2112	13	-37	-7	8	7	multi-exon	FALSE	canonical	3	250	junction_3	89.4627094877463	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCCCTGGAATTTGAGGT	NA	False	NA	25	True	AATAAA	-26	NA	89072109	89084235	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058893	chr3	+	2046	12	FSM	ENSMUSG00000068917.13	ENSMUST00000128318.8	1885	12	-164	3	-2	-1	multi-exon	FALSE	canonical	3	39	junction_3	144.088987655672	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCCCCCCCAATCCCTGG	NA	False	NA	15	True	AATAAA	-16	NA	89072121	89084225	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_89072414_89074341_89074512_89076001_89076231_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058939	chr3	+	576	5	FSM	ENSMUSG00000042747.13	ENSMUST00000040888.12	1172	5	418	178	-50	6	multi-exon	FALSE	canonical	3	1428	junction_1	178.055293378209	439	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGAACTGTGACAGTT	7541	False	NA	26	True	AATAAA	-20	NA	89153690	89157035	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_89153823_89154084_89154240_89154371_89154436_89156380_89156448_89156877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058953	chr3	+	353	1	FSM	ENSMUSG00000042737.10	ENSMUST00000137975.2	441	1	88	0	88	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGTAGTTTTGAGTAT	6952	False	NA	19	True	ATTAAA	-20	NA	89174033	89174386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_89174000_89174400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058967	chr3	-	2326	5	FSM	ENSMUSG00000028039.12	ENSMUST00000029673.10	2363	5	37	0	37	0	multi-exon	FALSE	canonical	3	176	junction_1	13.4047566184545	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAATGTCTCTTAACTGT	9226	False	NA	NA	False	NA	NA	NA	89230235	89221205	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_89222875_89223114_89223193_89223376_89223443_89223769_89224060_89230012
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058989	chr3	-	2900	22	FSM	ENSMUSG00000028041.18	ENSMUST00000107448.9	2893	22	-11	4	-4	0	multi-exon	TRUE	canonical	3	22	junction_3	33.3036602620203	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGCTCCTGGAAGCT	NA	False	NA	-15	True	AATAAA	-16	NA	89257307	89246950	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_89247261_89247361_89247487_89247707_89247780_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000058996	chr3	-	1060	6	FSM	ENSMUSG00000028041.18	ENSMUST00000155295.8	1034	6	-25	-1	-3	1	multi-exon	FALSE	canonical	3	122	junction_5	16.0549057923116	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGGTTTTGATTTGCTT	NA	False	NA	NA	False	ATTAAA	-25	NA	89257292	89253833	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059019	chr3	-	1824	8	FSM	ENSMUSG00000042642.14	ENSMUST00000107426.8	2238	8	-1	415	0	-415	multi-exon	FALSE	canonical	3	53	junction_7	99.0019583397321	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3737	False	NA	-15	True	AGTAAA	-18	NA	89319177	89310388	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319052
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059021	chr3	-	1770	8	NIC	ENSMUSG00000042642.14	novel	2238	8	NA	NA	-18	-415	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	105.155666921542	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3719	False	NA	-15	True	AGTAAA	-18	NA	89319195	89310388	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319124
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059054	chr3	+	2988	12	NIC	ENSMUSG00000042626.14	novel	3154	13	NA	NA	0	2	combination_of_known_junctions	TRUE	canonical	3	123	junction_1	129.584906273394	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCTGGAAAGTCTGATT	NA	False	NA	34	True	ATTAAA	-31	NA	89325857	89337336	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_+_89326017_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059073	chr3	+	3558	12	NNC	ENSMUSG00000042626.14	novel	2617	12	NA	NA	-7	2	intron_retention	TRUE	canonical	0	0	junction_2	162.57600892409	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCTGGAAAGTCTGATT	NA	False	NA	34	True	ATTAAA	-31	NA	89328927	89337336	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_89329653_89330232_89330308_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059084	chr3	+	3108	13	NNC	ENSMUSG00000042626.14	novel	2617	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	205.533790138967	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89328934	89337322	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_89329056_89329484_89329653_89330232_89330308_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059159	chr3	-	1163	7	FSM	ENSMUSG00000027944.14	ENSMUST00000079724.9	1139	7	-24	0	-24	0	multi-exon	FALSE	canonical	3	1573	junction_5	145.593040126695	423	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGTTTTGTCAAGGTC	7166	False	NA	NA	False	AATAAA	-26	NA	89906028	89902752	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905834
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059236	chr3	-	575	4	FSM	ENSMUSG00000090733.7	ENSMUST00000200305.2	546	4	-25	-4	0	0	multi-exon	TRUE	canonical	3	63	junction_3	8789.54951443285	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120955	90119973	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120687
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059313	chr3	-	2091	2	FSM	ENSMUSG00000001018.16	ENSMUST00000107352.2	1843	2	-585	337	11	7	multi-exon	FALSE	canonical	3	714	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATTATGGTTTCA	NA	False	NA	-19	True	AATAAA	-30	NA	90398320	90395669	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_90396901_90397460
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059324	chr3	-	3290	5	FSM	ENSMUSG00000001017.16	ENSMUST00000001043.14	3257	5	-33	0	1	0	multi-exon	TRUE	canonical	3	892	junction_3	258.017804618208	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90416791	90406262	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90414934_90416497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059325	chr3	-	2006	6	NIC	ENSMUSG00000001017.16	novel	2012	6	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	677	junction_3	303.893007487833	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90416793	90406262	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_-_90407415_90409422_90409561_90410402_90410587_90413414_90413569_90414851_90414934_90416497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059326	chr3	-	2009	6	FSM	ENSMUSG00000001017.16	ENSMUST00000049937.13	2012	6	12	-9	-1	0	multi-exon	FALSE	canonical	3	892	junction_3	230.9202459725	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90416793	90406262	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90413569_90414851_90414934_90416497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059340	chr3	-	1864	5	FSM	ENSMUSG00000001017.16	ENSMUST00000107346.8	1321	5	-10	-533	1	-3	multi-exon	FALSE	canonical	3	97	junction_1	566.644233624591	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAACCCAGGCTTTCTGTT	NA	False	NA	-6	True	NA	NA	NA	90416791	90406267	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_90407415_90410402_90410590_90413414_90413569_90414851_90414934_90416497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059351	chr3	+	436	2	ISM	ENSMUSG00000042312.11	ENSMUST00000048138.8	715	4	1401	0	1401	0	3prime_fragment	FALSE	canonical	3	396	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90423142	90431888	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_+_90423350_90431659
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059367	chr3	+	196	1	Intergenic	novelGene_250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAATAAGACATTAAATG	NA	False	NA	NA	False	NA	NA	NA	93869019	93869215	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_93869000_93869200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059425	chr3	+	4129	10	FSM	ENSMUSG00000005774.13	ENSMUST00000137088.8	4333	10	0	204	0	8	multi-exon	FALSE	canonical	3	32	junction_7	4.21637021355784	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTTTCTTTGTGGACAT	NA	False	NA	12	True	NA	NA	NA	94861418	94868668	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_94861563_94862325_94862458_94862662_94862697_94863056_94863140_94863582_94863703_94863797_94863918_94864031_94864114_94864407_94864610_94865092_94865197_94865560
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059434	chr3	-	4803	9	NIC	ENSMUSG00000019338.14	novel	4632	9	NA	NA	-32	26	combination_of_known_junctions	FALSE	canonical	3	70	junction_8	23.3422230089595	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTTCCCTGGATGTGAG	NA	False	NA	NA	False	NA	NA	NA	94922791	94913874	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94922630
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059449	chr3	-	1321	10	FSM	ENSMUSG00000005625.16	ENSMUST00000071664.12	1276	10	-36	-9	26	6	multi-exon	FALSE	canonical	3	876	junction_3	370.873576676127	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGATAGCTTTGCACACA	NA	False	NA	-4	True	AATAAA	-31	NA	94949899	94939998	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059454	chr3	-	1284	10	NNC	ENSMUSG00000005625.16	novel	1332	10	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	675.678936101576	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTCAAATAGTGATAGCT	NA	False	NA	-13	True	AATAAA	-22	NA	94949883	94940007	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_94940293_94940792_94940858_94940943_94941076_94941228_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059467	chr3	-	2596	15	FSM	ENSMUSG00000028126.17	ENSMUST00000107236.9	3618	15	-14	1036	-14	-997	multi-exon	FALSE	canonical	3	17	junction_14	9.68798961896341	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCACACAATGTAAATTTGA	1239	False	NA	NA	False	NA	NA	NA	95014200	94966876	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122_94973172_94974692_94974777_94975371_94975578_94978022_94978323_94979200_94979354_94979713_94979832_94981303_94981435_94985412_94985494_94990101_94990137_95013686
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059482	chr3	+	2282	5	ISM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	29	117	9	-117	intron_retention	FALSE	canonical	0	0	junction_1	386.814797416024	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTCTGATGTGTAAGGT	2589	False	NA	46	True	AATAAA	-14	NA	95018361	95030245	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059526	chr3	-	2889	8	FSM	ENSMUSG00000015711.9	ENSMUST00000015855.8	3140	8	251	0	251	0	multi-exon	FALSE	canonical	3	150	junction_5	23.7538396466589	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTGTTTCTTTTTAAAA	4601	False	NA	NA	False	ATTAAA	-19	NA	95189136	95160984	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_95162739_95165337_95165497_95166550_95166646_95169521_95169681_95170902_95171088_95172728_95172932_95175541_95175635_95188895
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059585	chr3	+	195	1	Intergenic	novelGene_251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAACAAGTCAGTCAACAT	NA	False	NA	NA	False	NA	NA	NA	95259143	95259338	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_95259100_95259300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059591	chr3	+	4360	22	NNC	ENSMUSG00000015522.19	novel	2699	22	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_11	68.3085569816557	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTGTGTTGTGTGATA	NA	False	NA	NA	False	TATAAA	-1	NA	95341714	95404551	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391164_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059599	chr3	+	4310	21	NNC	ENSMUSG00000015522.19	novel	4325	21	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	84.8418970792143	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTGTGTTGTGTGATA	NA	False	NA	NA	False	TATAAA	-1	NA	95341719	95404551	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391164_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059614	chr3	+	2791	5	FSM	ENSMUSG00000046519.16	ENSMUST00000177390.8	2836	5	45	0	-2	0	multi-exon	FALSE	canonical	3	50	junction_3	6.87386354243376	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTTCTCTCTGTACAT	NA	False	NA	4	True	AATAAA	-15	NA	95496289	95526553	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_95496446_95499027_95499217_95515216_95515349_95516982_95517098_95524354
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059629	chr3	+	3502	3	FSM	ENSMUSG00000038612.17	ENSMUST00000037947.15	3418	3	-77	-7	-77	7	multi-exon	FALSE	canonical	3	754	junction_2	15.5	1047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGGTATGGGTCTTTTC	6340	False	NA	21	True	AATAAA	-21	NA	95566021	95570494	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_95566799_95567071_95567320_95568017
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059635	chr3	+	4163	2	ISM	ENSMUSG00000038612.17	ENSMUST00000037947.15	3418	3	-44	-3	-44	3	intron_retention	FALSE	canonical	3	785	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGTGTGGTATGGGTCT	6373	False	NA	17	True	AATAAA	-17	NA	95566054	95570490	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_+_95566799_95567071
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059651	chr3	-	2438	18	FSM	ENSMUSG00000028107.15	ENSMUST00000029752.15	2400	18	-35	-3	-23	3	multi-exon	TRUE	canonical	1	178	junction_5	104.738626737206	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCCTTCATCTGAGTC	NA	False	NA	-16	True	AATAAA	-19	NA	95662218	95647284	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059656	chr3	-	2205	17	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	1	166	junction_16	126.775253278193	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	-17	True	AATAAA	-18	NA	95662183	95647285	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95662069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059660	chr3	-	2426	18	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_14	178.319956596045	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	-17	True	AATAAA	-18	NA	95662183	95647285	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658149_95658292_95658817_95658943_95660318_95660443_95661630_95661828_95662069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059662	chr3	-	2284	17	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	1	21	junction_13	152.583161239208	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	-17	True	AATAAA	-18	NA	95662183	95647285	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658817_95658943_95660318_95660443_95661630_95661828_95662069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059671	chr3	-	2177	16	FSM	ENSMUSG00000028107.15	ENSMUST00000163530.8	2157	16	-18	-2	-6	2	multi-exon	FALSE	canonical	1	51	junction_13	151.691997884602	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	-17	True	AATAAA	-18	NA	95662201	95647285	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95660318_95660443_95661630_95661828_95662069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059674	chr3	-	2498	17	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	2	intron_retention	FALSE	canonical	1	19	junction_13	152.949223089723	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	-17	True	AATAAA	-18	NA	95662183	95647285	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658292_95658817_95658943_95660318_95660443_95661630_95661828_95662069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059679	chr3	-	3024	16	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	2	intron_retention	FALSE	canonical	1	178	junction_5	103.251279249541	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	-17	True	AATAAA	-18	NA	95662183	95647285	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658943_95660318_95660443_95661630_95661828_95662069
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059701	chr3	-	2443	16	FSM	ENSMUSG00000015748.14	ENSMUST00000015892.14	2933	16	0	490	0	4	multi-exon	FALSE	canonical	3	400	junction_5	22.8428447343048	286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATATTTTTCATATGGT	NA	False	NA	-30	True	ATTAAA	-20	NA	95763197	95737925	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059732	chr3	-	755	6	FSM	ENSMUSG00000038543.14	ENSMUST00000090476.10	809	6	50	4	0	0	multi-exon	FALSE	canonical	3	27	junction_2	2.22710574513201	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTTGCCTACTTCTTA	NA	False	NA	NA	False	NA	NA	NA	95799267	95791269	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_95791550_95792281_95792384_95795452_95795609_95796168_95796228_95797034_95797122_95799196
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059738	chr3	+	2087	6	FSM	ENSMUSG00000015750.16	ENSMUST00000015894.12	2863	6	-43	819	-43	24	multi-exon	FALSE	canonical	3	313	junction_4	15.0651916682132	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGACTTGGCTTTAAGAG	NA	False	NA	4	True	AATAAA	-19	NA	95801237	95804781	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059749	chr3	+	3286	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	-8	-4	-8	4	multi-exon	FALSE	canonical	3	1451	junction_5	106.857641540301	436	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGTGTGTGATTGTTCA	NA	False	NA	109	True	AATAAA	-26	NA	95836549	95854706	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059769	chr3	+	193	1	Intergenic	novelGene_252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTGAGGGTAGTGGGT	2058	False	NA	NA	False	NA	NA	NA	95984870	95985063	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_95984900_95985100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059772	chr3	+	1734	6	FSM	ENSMUSG00000068856.4	ENSMUST00000076372.5	1915	6	179	2	-36	-2	multi-exon	FALSE	canonical	3	1297	junction_3	204.272758829953	739	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAGAGTGATGGGCACAG	NA	False	NA	NA	False	AATAAA	-19	NA	96079826	96084878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_96079924_96080286_96080416_96080856_96081400_96081638_96081846_96083950_96084125_96084294
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059789	chr3	-	461	1	FSM	ENSMUSG00000068855.4	ENSMUST00000090782.4	520	1	-14	73	-14	-73	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTTTTTAGAGCCACCA	NA	False	NA	-19	True	NA	NA	NA	96128210	96127749	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_96127700_96128200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059794	chr3	+	476	1	FSM	ENSMUSG00000074403.3	ENSMUST00000098843.3	488	1	26	-14	26	14	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTGTCGATGAAAGTAGCT	2006	False	NA	NA	False	NA	NA	NA	96175995	96176471	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_96176000_96176500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059797	chr3	+	215	1	Intergenic	novelGene_253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAATGGAATCTACCTAA	1785	False	NA	NA	False	NA	NA	NA	96249637	96249852	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_96249600_96249900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059800	chr3	-	401	1	FSM	ENSMUSG00000118406.2	ENSMUST00000238714.2	397	1	0	-4	0	4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCGCTGGGGAAATGCCC	NA	False	NA	NA	False	NA	NA	NA	96322149	96321748	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_96321700_96322100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059802	chr3	+	401	1	FSM	ENSMUSG00000119774.1	ENSMUST00000083839.3	166	1	0	-235	0	235	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGACACCTTAGGTAATTATA	NA	False	NA	NA	False	NA	NA	NA	96357761	96358162	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_96357800_96358200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059811	chr3	+	2807	8	FSM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	-3	-9	0	8	multi-exon	FALSE	canonical	3	228	junction_1	94.3746333956929	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTTCTTGTCTATGA	NA	False	NA	28	True	AATAAA	-23	NA	96465272	96469182	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_96465802_96466207_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059892	chr3	-	1154	8	FSM	ENSMUSG00000028100.12	ENSMUST00000029742.9	1039	8	-15	-100	-7	0	multi-exon	FALSE	canonical	3	11	junction_6	22.7075461699679	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTTTTTTAAGTGA	NA	False	NA	-1	True	AATAAA	-14	NA	96615870	96613383	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615125_96615203_96615307_96615492_96615643
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059898	chr3	-	2232	15	FSM	ENSMUSG00000028099.9	ENSMUST00000029741.9	2390	15	128	30	-24	3	multi-exon	FALSE	canonical	3	175	junction_5	23.0394515240839	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTATCTGTTCTTAGCAA	NA	False	NA	NA	False	AATAAA	-20	NA	96634816	96618835	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634664
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059916	chr3	+	2314	9	FSM	ENSMUSG00000028098.14	ENSMUST00000029740.14	2209	9	-104	-1	-104	1	multi-exon	FALSE	canonical	3	647	junction_7	60.034885691571	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGCTTCAGCGTCTCAAA	4691	False	NA	15	True	AATAAA	-22	NA	96634875	96698469	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_96635227_96661650_96661710_96665292_96665351_96682945_96683158_96690963_96691036_96692308_96692382_96693246_96693341_96695885_96696002_96697190
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059927	chr3	-	1767	14	FSM	ENSMUSG00000028096.14	ENSMUST00000029738.14	4598	14	24	2807	-10	398	multi-exon	FALSE	canonical	3	110	junction_5	18.4284960714547	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGGTCACTTGTCCA	1887	False	NA	-23	True	AGTAAA	-20	NA	96812638	96778403	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_96778911_96779792_96779859_96780775_96780866_96782943_96783040_96787389_96787483_96787936_96788026_96789834_96789945_96797224_96797306_96798118_96798240_96800181_96800284_96800813_96800921_96804648_96804753_96805807_96805868_96812497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059953	chr3	-	3002	23	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	-10	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	68.3504732250088	83	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTTTTTTCTTACCC	NA	False	NA	0	True	AATAGA	-21	NA	97517529	97468049	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059961	chr3	+	4176	8	FSM	ENSMUSG00000038205.13	ENSMUST00000045743.13	5006	8	101	729	99	2	multi-exon	FALSE	canonical	3	53	junction_1	11.768168758068	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAATTGTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	97565628	97580399	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_97565686_97565904_97566083_97569588_97569756_97570897_97570992_97571183_97571305_97573897_97574032_97574674_97574744_97577043
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059964	chr3	-	2793	11	ISM	ENSMUSG00000038170.16	ENSMUST00000168438.9	8264	46	186046	0	-5394	0	3prime_fragment	FALSE	canonical	1	1	junction_10	3.10644491340181	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTCCTTTGCTTCTCA	212	False	NA	NA	False	ATTAAA	-21	NA	97609977	97597139	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_-_97598170_97599636_97599684_97599911_97600051_97601251_97601396_97602207_97602435_97603194_97603315_97604305_97604531_97606424_97606550_97607110_97607301_97608873_97608994_97609551
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059969	chr3	+	2794	5	FSM	ENSMUSG00000027879.10	ENSMUST00000029476.9	2810	5	16	0	-10	0	multi-exon	FALSE	canonical	3	330	junction_4	8.07774721070176	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGTGTGAAGTTCTGT	NA	False	NA	18	True	AATAAA	-17	NA	97808521	97830592	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_97808737_97814536_97814647_97819894_97820056_97821815_97821963_97828431
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059979	chr3	-	1895	12	FSM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	0	-2	0	2	multi-exon	FALSE	canonical	3	1070	junction_1	240.376770374213	3659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTGTGTGATCATTA	NA	False	NA	0	True	AGTAAA	-18	NA	98247306	98220483	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059990	chr3	-	1823	12	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	66	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	546.899087190908	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	-2	True	AGTAAA	-16	NA	98247240	98220485	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235656_98240550_98240617_98241822_98241975_98247010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000059995	chr3	-	1831	12	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	66	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	540.249743289126	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	-2	True	AGTAAA	-16	NA	98247240	98220485	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226931_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060015	chr3	-	3433	27	FSM	ENSMUSG00000033285.16	ENSMUST00000052120.14	3432	27	-1	0	-1	0	multi-exon	FALSE	canonical	3	562	junction_13	50.4098586206493	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	-15	True	ATTAAA	-15	NA	100069724	100045495	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060030	chr3	+	2595	14	FSM	ENSMUSG00000027865.11	ENSMUST00000029459.10	3008	14	87	326	-50	0	multi-exon	FALSE	canonical	3	84	junction_11	11.7054581917706	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTCTTCTCAGAGTCA	NA	False	NA	22	True	AGTAAA	-33	NA	100069783	100113971	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_100069982_100077251_100077492_100078213_100078354_100085158_100085313_100085549_100085639_100089992_100090070_100093885_100094046_100095189_100095350_100098201_100098279_100098942_100099020_100101805_100101946_100103858_100103914_100109289_100109434_100113087
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060051	chr3	-	4549	23	FSM	ENSMUSG00000033222.17	ENSMUST00000076941.12	4541	23	-8	0	-8	0	multi-exon	TRUE	canonical	3	226	junction_14	22.0712594988997	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGTGATGCTGTGTGTT	NA	False	NA	-7	True	AATAAA	-17	NA	100876987	100846175	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_100847429_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060061	chr3	-	3728	23	FSM	ENSMUSG00000033161.11	ENSMUST00000036493.8	3679	23	-49	0	-49	0	multi-exon	FALSE	canonical	3	297	junction_17	44.2662166204014	2165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGAGTCCTTGTCGTTT	NA	False	NA	-6	True	AATAAA	-24	NA	101512049	101483534	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_101483901_101484234_101484327_101486309_101486412_101486836_101486968_101487089_101487236_101488462_101488587_101489040_101489196_101489317_101489487_101490003_101490155_101491060_101491198_101492038_101492215_101493442_101493636_101494131_101494267_101496321_101496432_101497082_101497282_101497762_101498032_101498436_101498555_101498655_101498791_101499096_101499211_101499693_101499898_101501518_101501579_101502313_101502425_101511718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060071	chr3	-	3700	23	NNC	ENSMUSG00000033161.11	novel	3679	23	NA	NA	-21	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	87.0399001313537	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTTTGAGTCCTTGTC	NA	False	NA	-10	True	AATAAA	-20	NA	101512021	101483538	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_101483901_101484234_101484327_101486309_101486412_101486836_101486968_101487089_101487236_101488462_101488587_101489040_101489196_101489317_101489487_101489999_101490155_101491060_101491198_101492038_101492215_101493442_101493636_101494131_101494267_101496321_101496432_101497082_101497282_101497762_101498032_101498436_101498555_101498655_101498791_101499096_101499211_101499693_101499898_101501518_101501579_101502313_101502425_101511718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060072	chr3	-	3650	23	NNC	ENSMUSG00000033161.11	novel	3679	23	NA	NA	21	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	87.0610714687641	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTTTGAGTCCTTGTC	NA	False	NA	-10	True	AATAAA	-20	NA	101511979	101483538	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_101483901_101484234_101484327_101486309_101486412_101486836_101486968_101487089_101487236_101488462_101488587_101489040_101489196_101489317_101489487_101490003_101490155_101491060_101491198_101492038_101492215_101493442_101493636_101494131_101494267_101496321_101496432_101497082_101497282_101497762_101498032_101498436_101498555_101498655_101498787_101499096_101499211_101499693_101499898_101501518_101501579_101502313_101502425_101511718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060074	chr3	-	3651	23	NNC	ENSMUSG00000033161.11	novel	3679	23	NA	NA	21	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	87.1165861749464	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTTTGAGTCCTTGTC	NA	False	NA	-10	True	AATAAA	-20	NA	101511979	101483538	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_101483901_101484234_101484327_101486309_101486412_101486836_101486968_101487089_101487236_101488462_101488587_101489040_101489196_101489317_101489487_101490003_101490155_101491060_101491198_101492038_101492215_101493442_101493636_101494131_101494267_101496321_101496432_101497085_101497282_101497762_101498032_101498436_101498555_101498655_101498791_101499096_101499211_101499693_101499898_101501518_101501579_101502313_101502425_101511718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060119	chr3	+	2382	5	FSM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	17	4976	-5	1289	multi-exon	FALSE	canonical	3	364	junction_4	22.0609949911603	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCTCATTTTACTGAGAA	NA	False	NA	20	True	AATAAA	-17	NA	102903040	102910799	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_102903284_102903471_102903578_102904558_102904702_102905805_102905920_102909023
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060135	chr3	+	3758	20	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	-7	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	4594.89725408776	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCCTGAAATGAATCCTG	NA	False	NA	NA	False	NA	NA	NA	102927915	102965112	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954499_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060168	chr3	+	1397	7	FSM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	81	-11	-13	-3	multi-exon	FALSE	canonical	3	3472	junction_4	166.601987449797	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATGTTTTCATTTTAAT	5010	False	NA	NA	False	NA	NA	NA	103079051	103086479	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060188	chr3	-	216	1	Intergenic	novelGene_254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAAGACTCAGTAAAGTG	NA	False	NA	NA	False	NA	NA	NA	103193735	103193519	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_-_103193500_103193700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060201	chr3	+	2757	11	NNC	ENSMUSG00000032952.12	novel	2799	10	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	22.1099525101254	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGCCTGTCGTCACTT	NA	False	NA	17	True	ATTAAA	-21	NA	103716905	103729341	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_103717104_103717183_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060261	chr3	-	3542	20	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	23	4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	300.32067810141	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	-21	True	AAGAAA	-25	NA	104725594	104702147	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703171_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060270	chr3	-	3571	21	FSM	ENSMUSG00000002227.16	ENSMUST00000166979.8	3584	21	17	-4	17	4	multi-exon	FALSE	canonical	3	19	junction_20	290.136325716033	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	-21	True	AAGAAA	-25	NA	104725862	104702147	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725438_104725672
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060276	chr3	-	3410	21	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	20	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	294.099914994887	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	-21	True	AAGAAA	-25	NA	104725597	104702147	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725403_104725533
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060297	chr3	-	2929	10	NNC	ENSMUSG00000070372.12	novel	3193	10	NA	NA	0	-154	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	505.947735552904	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTGTCCTTTCTGTC	9278	False	NA	-11	True	AATACA	-18	NA	104771716	104730248	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747102_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060313	chr3	-	2789	11	FSM	ENSMUSG00000027905.16	ENSMUST00000090680.11	2905	11	116	0	-6	0	multi-exon	FALSE	canonical	3	276	junction_2	22.5302019520465	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGTTTATTCTGTCGAG	NA	False	NA	0	True	AATAAA	-23	NA	105594774	105585585	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_105587029_105587659_105587762_105587865_105587972_105588296_105588380_105590041_105590101_105590192_105590332_105590468_105590612_105590731_105590847_105591600_105591770_105593954_105594050_105594439
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060330	chr3	-	1225	7	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	769	-23	-54	23	3prime_fragment	FALSE	canonical	3	4041	junction_4	350.10446853602	1365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCACTTCTTTATTATGTA	NA	False	NA	3	True	AATAAA	-39	NA	105866646	105849990	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060340	chr3	+	3250	10	FSM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	45	387	45	-387	multi-exon	FALSE	canonical	3	910	junction_4	50.9162953856864	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTGGGGGCTCTATCT	NA	False	NA	8	True	AATAAA	-19	NA	105866729	105876689	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060350	chr3	+	1965	10	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	-10	662	combination_of_known_junctions	FALSE	canonical	3	115	junction_8	275.350057782793	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCCTCCCCAGAGCTGT	NA	False	NA	12	True	AATAAA	-16	NA	105866813	105875505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873173_105873672_105873742_105874478
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060358	chr3	+	427	1	FSM	ENSMUSG00000092072.4	ENSMUST00000170669.4	429	1	-3	5	-3	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAGTTATTATTTATTCA	NA	False	NA	NA	False	AATAAA	-45	NA	105941976	105942403	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_105942000_105942400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060381	chr3	-	3216	2	FSM	ENSMUSG00000048109.11	ENSMUST00000061772.11	4343	2	609	518	37	-518	multi-exon	FALSE	canonical	3	61	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTGCCTGGAAGTGAA	NA	False	NA	-3	True	AATAAA	-22	NA	107240380	107233254	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_107233621_107237530
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060390	chr3	-	3146	20	NIC	ENSMUSG00000014601.14	novel	3215	21	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_18	52.4607754802473	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGCCTTGTGTGTAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	107539016	107519847	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_-_107520783_107521910_107522116_107522630_107522736_107523076_107523144_107523823_107523925_107524127_107524255_107525373_107525472_107525631_107525707_107526226_107526299_107527355_107527420_107527524_107527591_107528642_107528861_107529187_107529371_107531702_107531831_107531940_107532048_107532996_107533066_107534051_107534173_107534260_107534396_107535471_107535542_107538816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060392	chr3	-	3231	21	FSM	ENSMUSG00000014601.14	ENSMUST00000064759.7	3215	21	-16	0	-16	0	multi-exon	FALSE	canonical	3	175	junction_2	23.6893963620857	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGCCTTGTGTGTAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	107539026	107519847	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_107520783_107521910_107522116_107522630_107522736_107523076_107523144_107523823_107523925_107524127_107524255_107525373_107525472_107525631_107525707_107526226_107526299_107527355_107527420_107527524_107527591_107528642_107528861_107529187_107529371_107531702_107531831_107531940_107532048_107532996_107533066_107534051_107534173_107534260_107534396_107534703_107534779_107535471_107535542_107538816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060393	chr3	-	3217	21	NNC	ENSMUSG00000014601.14	novel	3215	21	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	51.361464153585	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGCCTTGTGTGTAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	107539016	107519847	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_107520783_107521910_107522116_107522630_107522736_107523076_107523144_107523823_107523925_107524127_107524255_107525373_107525472_107525631_107525703_107526226_107526299_107527355_107527420_107527524_107527591_107528642_107528861_107529187_107529371_107531702_107531831_107531940_107532048_107532996_107533066_107534051_107534173_107534260_107534396_107534703_107534779_107535471_107535542_107538816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060457	chr3	-	3269	9	FSM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	-2	-5	-2	5	multi-exon	FALSE	canonical	3	376	junction_4	42.0652395095998	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTATTTGTCTTGTTTTT	NA	False	NA	-5	True	ATTAAA	-37	NA	108053464	108014590	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060465	chr3	-	2465	11	FSM	ENSMUSG00000048997.18	ENSMUST00000117784.8	2387	11	-72	-6	-48	0	multi-exon	FALSE	canonical	3	27	junction_7	7.33212111192934	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGTCTCCCTGTTCTGTT	3334	False	NA	NA	False	AAGAAA	-28	NA	108117850	108109537	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114426_108114709_108114921_108115278_108115384_108115755_108115822_108117660
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060472	chr3	+	1029	9	FSM	ENSMUSG00000068749.10	ENSMUST00000090569.10	1239	9	214	-4	214	4	multi-exon	FALSE	canonical	3	2544	junction_4	248.775972262194	951	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATAGTCTGTGATCTTAT	NA	False	NA	15	True	AATAAA	-19	NA	108164455	108187294	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_108164622_108169001_108169069_108172381_108172509_108173748_108173817_108175108_108175217_108175348_108175408_108176143_108176247_108179606_108179694_108187050
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060498	chr3	-	1964	12	FSM	ENSMUSG00000068739.14	ENSMUST00000102625.11	1866	12	-52	-46	-12	46	multi-exon	FALSE	canonical	3	101	junction_3	974.241336537401	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTGGGTCTCCCTGGGC	NA	False	NA	-4	True	NA	NA	NA	108352537	108333881	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_108334298_108334575_108334706_108335176_108335249_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060527	chr3	+	2031	12	FSM	ENSMUSG00000027884.17	ENSMUST00000106609.8	2043	12	10	2	10	2	multi-exon	TRUE	canonical	3	66	junction_1	36.8117839559091	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGGTCTGGTGTGCAG	6606	False	NA	4	True	AATAAA	-16	NA	108561238	108586154	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_108561297_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060531	chr3	+	2087	12	NIC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	126	junction_1	23.1716555264122	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6623	False	NA	6	True	AATAAA	-18	NA	108561255	108586156	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_+_108561368_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060563	chr3	-	1066	4	ISM	ENSMUSG00000027881.15	ENSMUST00000199735.5	2508	7	-254	4425	5	-1008	5prime_fragment	FALSE	canonical	3	21	junction_2	122.246563232764	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACTTCAATGATAACTTT	6855	False	NA	NA	False	NA	NA	NA	108819038	108814887	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_-_108815164_108815247_108815400_108815641_108815721_108818479
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060572	chr3	-	3062	2	FSM	ENSMUSG00000049300.12	ENSMUST00000168412.3	3059	2	-3	0	-3	0	multi-exon	FALSE	canonical	3	26	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTAACCTGGTCTATTCT	NA	False	NA	-5	True	AATAAA	-21	NA	110158317	110153424	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_110155172_110157002
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060596	chr3	+	1280	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	-4	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	90.812220405626	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTTTATAATCTCCTT	7736	False	NA	10	True	AATAAA	-20	NA	115681809	115722739	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722405_115722480
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060597	chr3	+	1354	8	FSM	ENSMUSG00000033554.18	ENSMUST00000043342.10	1576	8	-22	244	-4	0	multi-exon	FALSE	canonical	3	254	junction_6	12.9331089117215	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	7736	False	NA	8	True	AATAAA	-18	NA	115681809	115722737	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060610	chr3	-	1500	11	FSM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	94	0	19	0	multi-exon	FALSE	canonical	3	261	junction_7	31.9274176844918	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	0	True	AATAAA	-20	NA	116301763	116282611	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301593
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060618	chr3	+	2718	11	FSM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	43	540	-6	-540	multi-exon	FALSE	canonical	3	173	junction_7	26.1091937830336	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGTATTTTGAAATCTAG	NA	False	NA	104	True	NA	NA	NA	116306761	116343090	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060622	chr3	-	703	1	FSM	ENSMUSG00000034437.9	ENSMUST00000075650.7	492	1	-121	-90	-121	90	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTTGGTGCATTTTTAA	NA	False	NA	NA	False	ATTAAA	-19	NA	116355196	116354493	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_116354500_116355200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060636	chr3	-	2774	12	FSM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	8	0	8	0	multi-exon	FALSE	canonical	3	876	junction_3	57.2050104723397	277	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTGATCTGTGAGTCCC	NA	False	NA	-1	True	AATAAA	-36	NA	116456318	116424812	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_116426130_116427370_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116456043
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060670	chr3	+	1003	4	FSM	ENSMUSG00000039887.12	ENSMUST00000039442.12	2037	4	-40	1074	-40	313	multi-exon	FALSE	canonical	3	72	junction_1	14.5143607047182	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACAGGTTCTCTTGGGAC	NA	False	NA	25	True	AATAAA	-26	NA	121085381	121155669	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_121085633_121092252_121092408_121113728_121113861_121155204
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060702	chr3	-	3407	23	FSM	ENSMUSG00000028127.11	ENSMUST00000029770.8	3489	23	82	0	-23	0	multi-exon	TRUE	canonical	3	145	junction_14	20.5277981251709	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATGTGCCTGACCTTTT	7213	False	NA	-1	True	ATTAAA	-22	NA	121608869	121552555	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_121553959_121555063_121555121_121558649_121558755_121562270_121562391_121562815_121562906_121563000_121563067_121563163_121563242_121565951_121566016_121567637_121567711_121567790_121567883_121569079_121569172_121569265_121569364_121569450_121569521_121570645_121570716_121573203_121573347_121575576_121575634_121577659_121577784_121578121_121578220_121579650_121579721_121585382_121585472_121586452_121586552_121590097_121590135_121608657
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060710	chr3	+	1858	7	FSM	ENSMUSG00000028124.16	ENSMUST00000029769.14	5589	7	-58	3789	-58	0	multi-exon	FALSE	canonical	3	413	junction_2	51.1826793619352	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAATGTGTGTGTTCTTGC	NA	False	NA	16	True	AATAAA	-28	NA	122039147	122060592	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_122039761_122049193_122049260_122052855_122052941_122055516_122055577_122056248_122056452_122058442_122058558_122059876
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060721	chr3	+	3344	12	FSM	ENSMUSG00000028121.9	ENSMUST00000029766.9	3311	12	-33	0	-12	0	multi-exon	TRUE	canonical	3	116	junction_1	21.0877740616698	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCTCTTTATTATTGA	NA	False	NA	NA	False	AATATA	-22	NA	122213393	122323840	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_122213833_122220093_122220404_122248701_122248742_122298575_122298705_122301774_122302221_122304867_122304972_122305999_122306653_122312911_122313028_122316817_122316990_122318572_122318685_122318935_122319149_122323230
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060727	chr3	+	3092	12	NNC	ENSMUSG00000028121.9	novel	3311	12	NA	NA	170	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	47.0025496055425	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGTATCCTGTCTCTTT	NA	False	NA	NA	False	AATATA	-14	NA	122213641	122323832	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_122213833_122220093_122220404_122248701_122248742_122298575_122298705_122301774_122302221_122304867_122304972_122305999_122306657_122312911_122313028_122316817_122316990_122318572_122318685_122318935_122319149_122323230
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060768	chr3	-	382	3	FSM	ENSMUSG00000104960.2	ENSMUST00000196466.2	448	3	66	0	-5	0	multi-exon	FALSE	canonical	3	427	junction_1	15.5	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCCTGTTTCTGGA	NA	False	NA	48	True	AATAAA	-21	NA	123301987	123301200	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_123301310_123301465_123301512_123301760
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060777	chr3	-	2129	13	FSM	ENSMUSG00000027968.12	ENSMUST00000029588.10	2121	13	-8	0	-8	0	multi-exon	FALSE	canonical	3	466	junction_6	145.639680948108	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGGTTTTATTTACA	NA	False	NA	-1	True	AATAAA	-17	NA	127347006	127330362	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060789	chr3	-	2655	10	FSM	ENSMUSG00000074238.7	ENSMUST00000051737.8	2662	10	10	-3	10	-2	multi-exon	FALSE	canonical	3	416	junction_8	26.3288791357173	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGCATCATGGCTTCAT	NA	False	NA	-13	True	AATAAA	-19	NA	127631150	127600657	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_127602403_127605864_127605994_127606182_127606257_127606888_127606945_127609244_127609344_127610558_127610656_127614408_127614435_127616232_127616260_127616913_127616963_127630797
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060814	chr3	+	473	2	ISM	ENSMUSG00000105960.2	ENSMUST00000199846.2	3871	5	4161	1993	4161	-1993	3prime_fragment	FALSE	canonical	3	92	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGTAATGGGATCCCTGT	NA	False	NA	8	True	NA	NA	NA	129551567	129555540	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_+_129551788_129555287
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060840	chr3	-	4650	24	FSM	ENSMUSG00000001052.16	ENSMUST00000001079.15	5128	24	54	424	54	260	multi-exon	FALSE	canonical	3	129	junction_20	16.4228159792433	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTTGGTGGTTTGTTT	NA	False	NA	-4	True	ATTAAA	-17	NA	129854502	129776831	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_129777656_129777815_129777920_129781335_129781429_129782544_129782650_129783297_129783436_129783943_129784120_129784979_129785091_129786623_129786798_129787378_129787538_129787917_129788042_129789562_129789770_129789989_129790046_129790329_129790449_129793160_129793274_129795953_129796064_129796588_129796716_129798642_129798746_129801059_129801245_129803310_129803544_129805440_129805522_129814186_129814292_129827479_129827624_129834322_129835097_129854217
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060844	chr3	+	663	1	FSM	ENSMUSG00000063328.7	ENSMUST00000076703.7	567	1	-26	-70	-26	70	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGTTACAGATCTAAACAG	9143	False	NA	NA	False	NA	NA	NA	129862034	129862697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_129862000_129862700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060862	chr3	-	1787	8	FSM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	2	0	2	0	multi-exon	FALSE	canonical	3	722	junction_3	33.5492327841959	412	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCCTGTCTTCTCTGA	NA	False	NA	NA	False	AATAAA	-43	NA	131065748	131027067	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060920	chr3	+	1110	10	FSM	ENSMUSG00000028167.16	ENSMUST00000120397.8	1172	10	62	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	10.4880884817015	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTAGTTTTTTTTCTTAA	NA	False	NA	21	True	AATAAA	-31	NA	134987043	135010187	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_134987130_134991275_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060936	chr3	+	3660	8	NNC	ENSMUSG00000078578.10	novel	1512	8	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1115.65161704371	172	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTCTTACTCAGTAAT	NA	False	NA	5	True	ATTAAA	-18	NA	135143990	135173959	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164641_135165735_135165842_135168710_135168805_135170955
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060946	chr3	+	2072	8	NNC	ENSMUSG00000078578.10	novel	738	8	NA	NA	59	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1174.85776820439	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTGTTTGACAAGTGC	NA	False	NA	13	True	AATAAA	-14	NA	135144135	135172436	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164641_135165735_135165842_135168710_135168805_135170955
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060974	chr3	+	3680	17	FSM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	-5	0	-5	0	multi-exon	TRUE	canonical	3	85	junction_8	25.1755554804656	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCATTGAACACCATGTC	NA	False	NA	11	True	AATAAA	-19	NA	135191366	135277165	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_135191619_135212669_135212765_135216735_135216842_135217563_135217735_135223663_135223788_135228752_135228929_135230277_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060985	chr3	+	2982	13	FSM	ENSMUSG00000028161.18	ENSMUST00000070198.14	4758	13	-51	1827	-51	121	multi-exon	FALSE	canonical	3	173	junction_9	19.2887416789057	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGACAGTTTAATTTTGTA	NA	False	NA	NA	False	AATAAA	-14	NA	136375833	136641661	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_136376663_136503486_136503688_136574362_136574488_136581849_136581962_136583390_136583537_136587161_136587302_136593707_136593786_136596196_136596292_136608863_136608990_136611059_136611135_136627593_136627679_136634282_136634381_136640789
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060991	chr3	+	2200	10	ISM	ENSMUSG00000028161.18	ENSMUST00000056758.9	2194	14	-662	30098	-16	22	5prime_fragment	FALSE	canonical	3	173	junction_9	16.3374900228558	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTTTCTAGCCCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	136375868	136611442	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_+_136376663_136503486_136503688_136574362_136574488_136581849_136581962_136583390_136583537_136587161_136587302_136593707_136593786_136596196_136596292_136608863_136608990_136611059
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000060993	chr3	+	843	3	FSM	ENSMUSG00000046818.8	ENSMUST00000053855.8	2722	3	64	1815	64	344	multi-exon	FALSE	canonical	3	67	junction_2	6.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTTGTAGTTTGCCTGC	NA	False	NA	NA	False	AATAAA	-21	NA	137329496	137332279	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_137329645_137329892_137330035_137331726
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061000	chr3	+	967	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	0	-2	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137570349	137572683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061007	chr3	+	1353	7	FSM	ENSMUSG00000091512.6	ENSMUST00000168345.6	1295	7	-56	-2	-36	2	multi-exon	FALSE	canonical	3	124	junction_3	73.5090697351921	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTCTGTATAGGCCTCT	24	False	NA	4	True	AATAAA	-24	NA	137624230	137634528	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_137624425_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061013	chr3	+	2489	8	FSM	ENSMUSG00000004127.13	ENSMUST00000040321.13	4025	8	-8	1544	-8	-1541	multi-exon	FALSE	canonical	3	147	junction_7	16.9609395196067	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCTAAAATTCAGGTTT	NA	False	NA	4	True	AATAAA	-19	NA	137849200	137864038	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_137849358_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061082	chr3	+	1331	7	FSM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	124	0	-54	0	multi-exon	FALSE	canonical	3	152	junction_1	21.5129160170246	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTGTTATAGTATTAAT	NA	False	NA	8	True	AATAAA	-15	NA	142470929	142489367	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_142471050_142477146_142477254_142483951_142484086_142485452_142485600_142485730_142485861_142487100_142487383_142488956
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061090	chr3	-	1834	10	ISM	ENSMUSG00000004591.17	ENSMUST00000172521.8	2510	16	-22	6756	-8	8	5prime_fragment	FALSE	canonical	3	374	junction_1	53.9089309809253	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTCAAAACAACAAGGT	NA	False	NA	NA	False	AAGAAA	-2	NA	142587773	142517305	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr3_-_142517364_142517674_142517819_142526297_142526408_142527279_142527466_142534641_142534856_142534944_142535091_142536257_142536376_142544968_142545124_142559174_142559476_142587371
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061105	chr3	+	1223	5	FSM	ENSMUSG00000037072.17	ENSMUST00000082437.11	1514	5	288	3	0	-3	multi-exon	FALSE	canonical	3	1325	junction_1	27.3404462289846	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTCTGCTTTGTCCTTTC	NA	False	NA	25	True	AATAAA	-27	NA	144276474	144303438	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144300661_144300712_144302583
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061124	chr3	+	1658	10	FSM	ENSMUSG00000074182.9	ENSMUST00000098534.9	2339	10	4	677	4	5	multi-exon	TRUE	canonical	3	657	junction_9	57.8243402122986	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATGTTACTGCCTTTTG	NA	False	NA	54	True	ATTAAA	-28	NA	145281990	145309873	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061129	chr3	-	2056	5	FSM	ENSMUSG00000028195.5	ENSMUST00000029846.5	2019	5	-35	-2	-35	2	multi-exon	FALSE	canonical	3	41	junction_2	2.58602010819715	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAATGTATGTTGTTTGG	NA	False	NA	NA	False	AATAAA	-18	NA	145355771	145352728	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_-_145353724_145353951_145354167_145354287_145354633_145354976_145355191_145355484
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061142	chr3	+	415	1	FSM	ENSMUSG00000105388.2	ENSMUST00000197973.2	321	1	-35	-59	-35	59	mono-exon	FALSE	NA	NA	NA	NA	NA	1014	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTCTCTCACAGAGGACC	8266	False	NA	NA	False	AATAAA	-34	NA	145584739	145585154	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_145584700_145585200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061188	chr3	+	2417	20	NNC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	372.352861865747	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCGGTAAGTTGGATATG	NA	False	NA	27	True	AATAAA	-17	NA	151916107	151938410	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927051_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061190	chr3	+	2428	20	NNC	ENSMUSG00000028034.16	novel	2552	20	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	368.587759275981	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCGGTAAGTTGGATAT	NA	False	NA	26	True	AATAAA	-16	NA	151916107	151938409	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927051_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061196	chr3	+	2414	20	NNC	ENSMUSG00000028034.16	novel	2552	20	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	394.085926482441	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCGGTAAGTTGGATAT	NA	False	NA	26	True	AATAAA	-16	NA	151916112	151938409	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927051_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061227	chr3	+	3898	24	FSM	ENSMUSG00000025437.16	ENSMUST00000117492.9	3886	24	-7	-5	-7	5	multi-exon	FALSE	canonical	3	273	junction_13	62.1055263911158	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAATGTTGAATTTATTTG	NA	False	NA	NA	False	AATAAA	-22	NA	152052107	152098975	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061258	chr3	-	2352	3	NNC	ENSMUSG00000052544.10	novel	416	3	NA	NA	-134273	1899	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	46	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCGTTGTTTTCTCTC	NA	False	NA	-4	True	AATAAA	-24	NA	153065693	152909103	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr3_-_152911229_152912254_152912363_153065574
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061264	chr3	+	204	1	Intergenic	novelGene_255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTTGTAAGTGTGCACCTG	4329	False	NA	NA	False	NA	NA	NA	152925482	152925686	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr3_+_152925500_152925700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061287	chr3	-	1973	11	NIC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	8	0	intron_retention	TRUE	canonical	3	875	junction_10	61.0908340096941	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	169	False	NA	-6	True	AATAAA	-16	NA	153650092	153627993	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644805_153647519_153647608_153650032
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061299	chr3	+	2055	9	FSM	ENSMUSG00000028199.19	ENSMUST00000029850.15	2507	9	453	-1	20	1	multi-exon	FALSE	canonical	3	139	junction_1	25.4447931805311	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTGTCTGTCTCGTGTGT	NA	False	NA	19	True	AGTAAA	-19	NA	154302800	154328820	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061364	chr3	+	2456	13	FSM	ENSMUSG00000063052.10	ENSMUST00000156597.8	2450	13	-5	-1	-5	1	multi-exon	TRUE	canonical	3	70	junction_1	215.046296694973	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTATAGTGTTTTTGTTT	NA	False	NA	30	True	AATAAA	-45	NA	157742331	157772727	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr3_+_157742514_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061365	chr3	+	2638	14	NIC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	-5	1	combination_of_known_junctions	FALSE	canonical	3	146	junction_2	190.962278254048	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTATAGTGTTTTTGTTT	NA	False	NA	30	True	AATAAA	-45	NA	157742331	157772727	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr3_+_157742514_157746077_157746260_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061410	chr4	-	699	3	FSM	ENSMUSG00000028234.7	ENSMUST00000103009.5	582	3	-114	-3	63	0	multi-exon	FALSE	canonical	3	6653	junction_2	831.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGGCTTTTGTTCAG	-4	False	NA	-37	True	AATAAA	-18	NA	3835602	3834469	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_3834684_3834935_3835010_3835191
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061412	chr4	-	506	4	FSM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	64	3136	64	0	multi-exon	FALSE	canonical	3	6653	junction_2	782.301021914767	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGGCTTTTGTTCAG	-3	True	NA	-37	True	AATAAA	-18	NA	3835601	3834469	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_3834684_3834935_3835010_3835191_3835292_3835483
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061437	chr4	+	2210	3	FSM	ENSMUSG00000049119.15	ENSMUST00000054857.13	3210	3	-48	1048	-17	107	multi-exon	FALSE	canonical	3	35	junction_1	17	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGAGCAGAATCTTTTT	NA	False	NA	9	True	ATTAAA	-23	NA	5644072	5800053	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_5644411_5729570_5729658_5798268
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061446	chr4	+	2118	4	FSM	ENSMUSG00000049119.15	ENSMUST00000124256.8	618	4	81	-1581	-19	17	multi-exon	FALSE	canonical	3	14	junction_1	25.9272486435067	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCGATTTCTTCGATATT	-2	True	NA	-81	True	AAAAAG	-1	NA	5644170	5799963	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_5644411_5678902_5678999_5729570_5729658_5798268
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061465	chr4	-	3539	31	FSM	ENSMUSG00000028245.16	ENSMUST00000029910.12	3507	31	-32	0	-32	0	multi-exon	FALSE	canonical	3	82	junction_12	11.571804814577	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTCTTATCTTATTTAAA	-7	True	NA	NA	False	ATTAAA	-21	NA	6454303	6396206	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_6396818_6398318_6398429_6398544_6398648_6398808_6398960_6406786_6406871_6408557_6408682_6409089_6409158_6409843_6409912_6413567_6413627_6414963_6415073_6416499_6416664_6417164_6417208_6417745_6417878_6418260_6418382_6418471_6418524_6419863_6419928_6420049_6420141_6421056_6421137_6423321_6423499_6424878_6424988_6426401_6426474_6428391_6428522_6432679_6432733_6432829_6432878_6433262_6433335_6435056_6435108_6437741_6437779_6437853_6437922_6438042_6438122_6440899_6440990_6453984
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061479	chr4	+	2103	8	FSM	ENSMUSG00000047187.10	ENSMUST00000060232.8	2133	8	-37	67	-37	-67	multi-exon	FALSE	canonical	3	1070	junction_6	76.6414924655499	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTCTCATGATGAGCACA	-54	True	NA	19	True	AATAAA	-19	NA	8535606	8607711	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_8535909_8561151_8561224_8572525_8572594_8577954_8578038_8578470_8578564_8582381_8582494_8604373_8604443_8606407
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061488	chr4	+	2438	3	FSM	ENSMUSG00000041235.13	ENSMUST00000127476.8	2381	3	-35	-22	29	22	multi-exon	FALSE	canonical	3	49	junction_1	6	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCGAAGGTCAAAAAAGATC	8	True	NA	NA	False	AAAAAG	-12	NA	8690434	8785613	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_8690776_8751323_8753149_8785341
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061502	chr4	-	2942	24	NNC	ENSMUSG00000028207.19	novel	6694	24	NA	NA	-1	-3681	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_21	108.084473020543	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCACGTGTGAAAGAAAAGAA	3	True	NA	NA	False	AAGAAA	-5	NA	9669087	9452759	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_9453446_9474897_9475032_9475389_9475482_9484471_9484608_9508626_9508765_9514588_9514679_9517635_9517735_9529885_9530023_9531914_9532066_9537678_9537766_9542224_9542311_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635896_9635970_9639197_9639348_9668780
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061514	chr4	+	661	1	FSM	ENSMUSG00000066315.10	ENSMUST00000120234.2	636	1	-28	3	-28	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTCTGTGTTGGAGAGTT	-8	True	NA	NA	False	AAAAAG	-41	NA	10848391	10849052	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_10848400_10849100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061517	chr4	+	2127	6	FSM	ENSMUSG00000059482.16	ENSMUST00000080517.14	2116	6	-7	-4	-7	0	multi-exon	FALSE	canonical	3	121	junction_4	10.0079968025574	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTCTCTGTGCAATTAT	NA	False	NA	15	True	AATAAA	-19	NA	10874490	10899425	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_10874773_10879522_10879611_10881800_10881869_10882406_10882473_10893262_10893359_10897898
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061539	chr4	-	1090	9	FSM	ENSMUSG00000050323.15	ENSMUST00000126468.8	863	9	-56	-171	0	3	multi-exon	TRUE	canonical	3	35	junction_7	109.001146782958	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTCTGAGTTTTTTT	-20	True	NA	0	True	TTTAAA	-6	NA	11076205	11051041	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073139_11073244_11075979
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061555	chr4	+	2624	12	FSM	ENSMUSG00000028212.17	ENSMUST00000029866.16	3006	12	57	325	47	-221	multi-exon	FALSE	canonical	3	47	junction_2	64.9822607707368	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACTAACTGCTTAAAAGT	0	True	NA	3	True	AATAAA	-13	NA	11191782	11204454	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_11191816_11192680_11192718_11192817_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061558	chr4	+	2650	12	FSM	ENSMUSG00000028212.17	ENSMUST00000108324.4	2908	12	53	205	47	-198	multi-exon	FALSE	canonical	3	208	junction_1	27.8285779741998	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGCCATTGCTTGTAGA	0	True	NA	26	True	AATAAA	-36	NA	11191782	11204477	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_11191816_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061582	chr4	-	2769	19	FSM	ENSMUSG00000045205.17	ENSMUST00000084892.12	6754	19	5	3980	5	-3980	multi-exon	FALSE	canonical	3	48	junction_13	8.17176711475418	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAAGTTGATTGTTTTTAT	-5	True	NA	NA	False	ATTAAA	-17	NA	11322132	11265294	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_11265943_11267612_11267772_11273006_11273140_11276863_11276947_11277928_11277986_11281003_11281125_11285053_11285174_11287474_11287634_11289669_11289744_11290190_11290290_11290390_11290523_11292553_11292689_11295935_11296060_11303311_11303458_11303946_11304069_11304299_11304391_11309365_11309491_11317072_11317181_11321999
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061622	chr4	+	1493	2	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	-52	388	multi-exon	FALSE	canonical	3	4269	junction_1	0	24	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTAGTTCAGTTTTTC	-4	True	NA	NA	False	NA	NA	NA	12232780	12234339	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr4_+_12232839_12232904
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061643	chr4	+	2292	7	FSM	ENSMUSG00000028221.4	ENSMUST00000029875.4	2339	7	136	-89	136	89	multi-exon	FALSE	canonical	3	286	junction_4	16.4688257693808	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTTGTTCTATTTCTTC	-56	True	NA	10	True	AATAAA	-17	NA	14864211	14915265	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_14864438_14886533_14886683_14892392_14892500_14893500_14893625_14902486_14902540_14912431_14912523_14913723
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061656	chr4	-	1194	10	FSM	ENSMUSG00000028223.9	ENSMUST00000029877.9	2959	10	101	1664	101	-1664	multi-exon	FALSE	canonical	3	139	junction_6	12.6207745648706	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGAGTGTCTGCTCTGCT	NA	False	NA	-5	True	AATAAA	-39	NA	15945406	15918903	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_15919095_15919193_15919257_15919831_15919979_15922484_15922558_15924253_15924354_15929726_15929875_15930913_15931001_15931124_15931183_15932892_15933096_15945282
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061660	chr4	+	2525	16	FSM	ENSMUSG00000028224.15	ENSMUST00000029879.15	2533	16	8	0	8	0	multi-exon	TRUE	canonical	3	165	junction_3	27.9629914152418	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTGTGTGGTAACGT	-37	True	NA	9	True	AATAAA	-15	NA	15957932	15992589	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_15958111_15962310_15962445_15963771_15963921_15964246_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061664	chr4	+	2390	16	NNC	ENSMUSG00000028224.15	novel	2533	16	NA	NA	18	-1	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	53.2213825032341	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTTTGTGTGGTAACG	15	True	NA	8	True	AATAAA	-14	NA	15957984	15992588	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_15958111_15962310_15962445_15963771_15963921_15964328_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061711	chr4	+	1460	12	FSM	ENSMUSG00000028252.21	ENSMUST00000108240.3	1406	12	-54	0	0	0	multi-exon	FALSE	canonical	3	256	junction_11	64.4238290701982	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTAGTTTTCTGGATTTT	-5	True	NA	12	True	AATAAA	-14	NA	21727700	21747962	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061718	chr4	-	1580	4	FSM	ENSMUSG00000028251.6	ENSMUST00000029915.6	1588	4	8	0	8	0	multi-exon	FALSE	canonical	3	232	junction_1	27.288581250528	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGTATTTCTTTAA	-9	True	NA	0	True	AATAAA	-24	NA	21767204	21757381	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_21758476_21759369_21759530_21759622_21759794_21767049
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061738	chr4	+	2547	9	FSM	ENSMUSG00000040410.15	ENSMUST00000039234.10	2546	9	0	-1	0	1	multi-exon	FALSE	canonical	3	42	junction_4	14.7627063914446	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTGTTAAGAATCTTTA	NA	False	NA	NA	False	AATAAA	-45	NA	22357542	22434092	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061758	chr4	+	457	1	NIC	ENSMUSG00000028261.14	novel	3632	3	NA	NA	5	-4941	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACTATGGCTTATTTTCT	-32	True	NA	69	True	NA	NA	NA	24898087	24898544	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_24898100_24898500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061800	chr4	+	1874	6	ISM	ENSMUSG00000028280.10	ENSMUST00000029947.6	2286	10	19820	0	19820	0	3prime_fragment	FALSE	canonical	3	14	junction_2	4.22374241638857	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGATGTCATCACTGACT	NA	False	NA	8	True	AATAAA	-15	NA	33152340	33163588	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_+_33152637_33157059_33157143_33158036_33158178_33160116_33160270_33161629_33161827_33162584
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061831	chr4	-	2284	20	FSM	ENSMUSG00000040044.12	ENSMUST00000048706.10	2300	20	16	0	-15	0	multi-exon	FALSE	canonical	3	324	junction_6	85.9268193438375	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	-20	True	NA	-17	True	CATAAA	-21	NA	34614928	34570795	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061843	chr4	+	1869	20	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	157.054324810966	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTAGTAGTGTGTTTT	-8	True	NA	12	True	AATAGA	-27	NA	34614960	34660167	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_34615027_34618553_34618633_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061866	chr4	-	768	3	FSM	ENSMUSG00000028295.15	ENSMUST00000029972.4	786	3	18	0	18	0	multi-exon	FALSE	canonical	3	160	junction_2	5.5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	34778405	34768663	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_34769148_34771257_34771415_34778278
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061888	chr4	-	3851	3	FSM	ENSMUSG00000036822.7	ENSMUST00000042575.7	3856	3	5	0	5	0	multi-exon	FALSE	canonical	3	214	junction_1	19	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGTGCAACATTGATT	-32	True	NA	0	True	AATAAA	-28	NA	40269845	40259600	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_40263082_40268303_40268502_40269673
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061896	chr4	-	612	4	FSM	ENSMUSG00000071014.11	ENSMUST00000095128.10	659	4	-16	63	-16	11	multi-exon	FALSE	canonical	3	2502	junction_3	28.8251433455046	491	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTTACTGTCCAAAGGTT	NA	False	NA	0	True	AATAAA	-28	NA	40279437	40270653	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_40270848_40272809_40272855_40277652_40277746_40279157
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061904	chr4	+	226	1	Intergenic	novelGene_256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAGTAAGCGACCTCCA	NA	False	NA	NA	False	NA	NA	NA	40691908	40692134	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_40691900_40692100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061955	chr4	+	4539	24	FSM	ENSMUSG00000028423.16	ENSMUST00000098143.11	4594	24	55	0	55	0	multi-exon	FALSE	canonical	3	177	junction_17	193.960434840598	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTATTTTGTTTATTGAG	-31	True	NA	34	True	ATTAAA	-19	NA	40970960	41025993	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41015202_41015434_41016076_41016151_41017971_41018074_41018447_41018490_41021748_41021848_41022259_41022327_41023613_41023760_41024473_41024579_41024800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061960	chr4	+	3023	16	FSM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	63	1263	63	0	multi-exon	FALSE	canonical	3	463	junction_8	92.9020033272815	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTCTTGTCAGGCTA	-23	True	NA	16	True	NA	NA	NA	40970968	41012608	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061976	chr4	-	1765	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	0	0	0	0	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	-4	True	AATAAA	-21	NA	41098183	41092721	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061985	chr4	-	4467	26	FSM	ENSMUSG00000028430.15	ENSMUST00000030138.9	4599	26	132	0	132	0	multi-exon	FALSE	canonical	3	287	junction_9	34.7585960591046	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	NA	False	NA	-4	True	NA	NA	NA	41124323	41114426	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000061995	chr4	-	4335	29	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	14	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_24	189.072211126882	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTCTCCGTGTTCTGG	2	True	NA	-4	True	AATAAA	-14	NA	41275102	41194313	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229696_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062008	chr4	-	4315	29	NNC	ENSMUSG00000028433.15	novel	4368	29	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	228.907609916208	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTTGGTCTCCGTGTTCT	2	True	NA	-6	True	AATAAA	-12	NA	41275102	41194315	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202440_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229696_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062030	chr4	+	198	1	Intergenic	novelGene_257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCTTCACAAACAAGCCCA	NA	False	NA	NA	False	NA	NA	NA	41485040	41485238	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_41485000_41485200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062059	chr4	+	2402	4	FSM	ENSMUSG00000036052.15	ENSMUST00000098112.9	3093	4	-2	693	-2	0	multi-exon	FALSE	canonical	3	21	junction_3	4.32049379893857	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCTGCGCAGAAGCAGTA	-28	True	NA	NA	False	AATAAA	-17	NA	42949864	42958732	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_42950005_42953140_42953386_42956525_42957128_42957317
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062102	chr4	-	4071	11	NIC	ENSMUSG00000028454.17	novel	3525	11	NA	NA	18	-2	intron_retention	FALSE	canonical	3	30	junction_10	46.9541265492182	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAGCTAAGATCTGTGA	11	True	NA	-9	True	AATAAA	-19	NA	43025801	43017636	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025285
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062104	chr4	-	3581	11	NNC	ENSMUSG00000028454.17	novel	3525	11	NA	NA	18	-2	intron_retention	FALSE	canonical	0	0	junction_9	57.8805666869287	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAGCTAAGATCTGTGA	11	True	NA	-9	True	AATAAA	-19	NA	43025801	43017636	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024558_43025075_43025779
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062123	chr4	-	1138	9	NIC	ENSMUSG00000028455.16	novel	1874	10	NA	NA	31	7	combination_of_known_splicesites	FALSE	canonical	3	34	junction_5	1042.82857531811	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCTCATTGATTGGGGG	-3	True	NA	0	True	AATAAA	-23	NA	43031405	43028018	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030239_43030299_43030435_43030536_43030970_43031109_43031328
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062139	chr4	-	3054	9	FSM	ENSMUSG00000036002.13	ENSMUST00000107956.8	3107	9	53	0	15	0	multi-exon	TRUE	canonical	3	38	junction_5	6.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTCTACTTTTTTTTG	-28	True	NA	2	True	AATAAA	-21	NA	43045744	43032413	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43045647
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062183	chr4	-	3564	17	FSM	ENSMUSG00000028467.16	ENSMUST00000030189.14	3544	17	-20	0	-20	0	multi-exon	FALSE	canonical	3	32	junction_8	9.51314879522022	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTGTGGTGTGTCTGAG	-27	True	NA	-1	True	AATAAA	-16	NA	43578893	43566927	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_43567468_43567724_43567917_43567999_43568116_43568195_43568339_43568437_43568545_43568654_43568807_43568885_43568994_43569180_43569286_43569488_43569662_43569829_43569956_43570036_43570191_43570345_43570449_43570671_43570912_43571188_43571408_43573750_43573867_43574027_43574120_43578015
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062198	chr4	+	510	1	FSM	ENSMUSG00000043770.11	ENSMUST00000102482.5	297	1	-123	-90	-123	90	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAGAGATGAAGGGGAGA	8381	False	NA	NA	False	ATTAAA	-33	NA	43663919	43664429	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_43663900_43664400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062222	chr4	+	1105	6	FSM	ENSMUSG00000028478.19	ENSMUST00000107849.10	1099	6	-8	2	-8	-1	multi-exon	FALSE	canonical	2	8	junction_4	631.636794368409	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACATGAAGCATCTTTAA	-8	True	NA	19	True	AATAAA	-19	NA	44012669	44032844	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44030214_44030269_44032400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062227	chr4	-	2827	12	FSM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	93	0	51	0	multi-exon	FALSE	canonical	3	48	junction_9	6.79693659727954	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGATATCTGGTCCCAGAA	333	False	44072721	-6	True	NA	NA	NA	44072685	44036825	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_44037354_44038946_44039064_44040253_44040437_44041662_44041885_44042162_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775_44060228_44066754_44066961_44072361
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062251	chr4	+	446	2	ISM	ENSMUSG00000035649.18	ENSMUST00000142714.8	2548	7	-59	147626	0	-38	5prime_fragment	FALSE	canonical	3	36	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGAAGTCCAAGCGGAAG	10	True	NA	NA	False	AAGAAA	-4	NA	44756587	44762190	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_+_44756693_44761849
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062276	chr4	-	4631	11	FSM	ENSMUSG00000048232.13	ENSMUST00000052236.13	4635	11	0	4	0	-3	multi-exon	FALSE	canonical	3	26	junction_8	5.25737577123797	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGTGCTTCTGGGGTCAT	NA	False	NA	-4	True	AATAAA	-16	NA	45084604	45034250	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_45036083_45040525_45040708_45041731_45042046_45043639_45043904_45044715_45044869_45046343_45046415_45048439_45048577_45051552_45051703_45058328_45059151_45061939_45062531_45084489
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062279	chr4	-	675	2	FSM	ENSMUSG00000078713.9	ENSMUST00000107810.3	639	2	-36	0	-36	0	multi-exon	FALSE	canonical	3	2176	junction_1	0	658	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGTTTTGTGTTTTTAAT	NA	False	NA	NA	False	AATAAA	-18	NA	45108150	45105207	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_45105645_45107912
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062288	chr4	+	1398	9	FSM	ENSMUSG00000035601.10	ENSMUST00000044673.9	2064	9	24	642	-4	347	multi-exon	FALSE	canonical	3	203	junction_1	41.8103979292233	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCGATTTCCACCAGCT	-12	True	NA	12	True	CATAAA	-21	NA	45297150	45315489	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_45297196_45300416_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062294	chr4	-	1941	3	FSM	ENSMUSG00000045973.19	ENSMUST00000107796.8	4433	3	0	2492	0	826	multi-exon	FALSE	canonical	3	68	junction_2	5.5	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTTTAATGCAACCCCAAG	-17	True	NA	NA	False	AATAAA	-26	NA	45408761	45398414	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_45400180_45404726_45404836_45408694
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062305	chr4	+	2251	2	FSM	ENSMUSG00000035561.6	ENSMUST00000044384.5	2298	2	47	0	47	0	multi-exon	FALSE	canonical	3	42	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTATCACTGTTTTCCTT	-36	True	NA	12	True	ATTAAA	-26	NA	45799068	45804604	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_45799170_45802454
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062317	chr4	-	3712	10	FSM	ENSMUSG00000035495.16	ENSMUST00000107772.8	3726	10	15	-1	-5	1	multi-exon	FALSE	canonical	3	146	junction_3	21.9291789378647	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTGGGAAGAGTGCTCTG	-29	True	NA	-2	True	AATAAA	-26	NA	46138460	46114744	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138379
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062321	chr4	-	3708	10	FSM	ENSMUSG00000035495.16	ENSMUST00000107770.2	2700	10	-22	-986	-5	0	multi-exon	FALSE	canonical	3	38	junction_9	51.5344784502162	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGTGGGAAGAGTGCTCT	-29	True	NA	-3	True	AATAAA	-25	NA	46138460	46114745	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135592_46138379
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062336	chr4	-	980	6	FSM	ENSMUSG00000028329.14	ENSMUST00000030013.12	955	6	-20	-5	-20	5	multi-exon	FALSE	canonical	3	75	junction_2	5.6	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAGTCTTCACAGAAACAA	-16	True	NA	4	True	AATAAA	-23	NA	46196331	46175216	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_46175416_46183117_46183236_46184287_46184454_46185590_46185697_46193049_46193158_46196048
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062359	chr4	+	2166	6	FSM	ENSMUSG00000028334.11	ENSMUST00000030018.5	2179	6	11	2	11	-2	multi-exon	FALSE	canonical	3	811	junction_3	76.1377698648969	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTACTTTGATGTGTGT	NA	False	NA	12	True	NA	NA	NA	46489258	46503630	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500980_46502434
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062402	chr4	-	2595	15	NIC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_12	196.22390636355	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGAGCTTCCTTCATA	5	True	NA	-3	True	ATTAAA	-18	NA	48473425	48430857	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468753_48468994_48469883_48470073_48473265
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062413	chr4	+	1646	3	FSM	ENSMUSG00000039693.12	ENSMUST00000107704.2	1597	3	-50	1	-50	0	multi-exon	FALSE	canonical	3	153	junction_1	75.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTACACTGTGTATGT	-12	True	NA	14	True	NA	NA	NA	48540448	48561918	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_48540569_48552379_48552831_48560843
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062436	chr4	-	2114	2	FSM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	0	0	0	0	multi-exon	FALSE	canonical	3	1281	junction_1	0	266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTTTAAAGTGTTATT	NA	False	NA	0	True	AATAAA	-21	NA	49521093	49512595	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_49514578_49520961
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062454	chr4	+	2425	18	ISM	ENSMUSG00000028312.20	ENSMUST00000117280.8	5328	25	15	18453	6	11233	5prime_fragment	FALSE	canonical	3	100	junction_1	82.0190289339397	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCCAAAAGAAAGCTGAAGAA	-4	True	NA	NA	False	ATTAAA	-15	NA	52439257	52469807	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_+_52439335_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062493	chr4	-	3530	5	FSM	ENSMUSG00000003032.9	ENSMUST00000107619.3	3029	5	-495	-6	-495	6	multi-exon	FALSE	canonical	3	1140	junction_2	61.7267162580353	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTGTTTTTTTTTTTC	365	False	NA	-1	True	AATAAA	-27	NA	55532961	55527136	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_55528301_55529717_55529883_55529998_55530984_55531629_55531751_55531866
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062502	chr4	-	2307	5	NNC	ENSMUSG00000003032.9	novel	3029	5	NA	NA	-12	-738	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_4	531.726139568105	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGAACAGATGGGGTCT	-3	True	NA	NA	False	NA	NA	NA	55532478	55527880	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_55528301_55529717_55529883_55529998_55530984_55531629_55531751_55531862
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062503	chr4	-	2307	5	NNC	ENSMUSG00000003032.9	novel	3029	5	NA	NA	-12	-738	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	549.602299394753	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGAACAGATGGGGTCT	-3	True	NA	NA	False	NA	NA	NA	55532478	55527880	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_55528301_55529717_55529883_55529994_55530984_55531629_55531751_55531866
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062504	chr4	-	2419	4	ISM	ENSMUSG00000003032.9	ENSMUST00000107619.3	3029	5	-12	738	-12	-738	intron_retention	FALSE	canonical	3	1140	junction_2	71.2756776342549	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGAACAGATGGGGTCT	-3	True	NA	NA	False	NA	NA	NA	55532478	55527880	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_-_55528301_55529717_55529883_55529998_55530984_55531629
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062506	chr4	-	2303	5	NNC	ENSMUSG00000003032.9	novel	3029	5	NA	NA	-12	-738	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_4	533.016416257511	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGAACAGATGGGGTCT	-3	True	NA	NA	False	NA	NA	NA	55532478	55527880	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_55528301_55529717_55529883_55529998_55530984_55531629_55531747_55531862
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062524	chr4	+	2874	6	FSM	ENSMUSG00000038827.12	ENSMUST00000045368.12	4275	6	0	1401	0	-1401	multi-exon	FALSE	canonical	3	125	junction_2	10.8369737473153	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATATTGCATCCTCCTCG	0	True	NA	NA	False	NA	NA	NA	56802348	56808200	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_56802727_56803595_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062531	chr4	-	3676	19	FSM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	-12	0	-12	0	multi-exon	FALSE	canonical	3	197	junction_15	25.8110417562564	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACCGACTGGCTTAAT	-29	True	NA	-6	True	AATAAA	-21	NA	56865200	56810934	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56847809_56848000_56864976
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062537	chr4	-	3391	18	NIC	ENSMUSG00000038816.15	novel	3664	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_17	49.5178133688317	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACCGACTGGCTTAAT	-16	True	NA	-6	True	AATAAA	-21	NA	56846092	56810934	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062551	chr4	-	4067	17	NIC	ENSMUSG00000055296.15	novel	15981	18	NA	NA	-5	1071	combination_of_known_junctions	FALSE	canonical	3	49	junction_13	10.0853777197485	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCACACATACTGCAGTGC	0	True	NA	NA	False	NA	NA	NA	56947429	56878804	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_56880293_56886017_56886213_56888534_56888710_56890799_56890901_56899025_56899172_56899305_56899429_56903917_56904050_56906214_56906314_56910156_56910248_56912047_56912131_56916701_56916807_56923338_56923509_56924978_56925216_56926176_56926294_56936368_56936471_56937861_56937980_56946844
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062567	chr4	+	3086	4	ISM	ENSMUSG00000038729.25	ENSMUST00000107600.8	7231	5	15447	3825	15447	-3825	3prime_fragment	FALSE	canonical	2	4	junction_1	6.48074069840786	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAGCGAAGCAAACA	NA	False	NA	NA	False	AATACA	-45	NA	57757541	57893157	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_+_57757684_57854561_57857038_57883023_57883203_57892868
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062581	chr4	+	2893	3	NIC	ENSMUSG00000038729.25	novel	7172	3	NA	NA	16	-3824	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	3.5	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGCAAAGCGAAGCAAACAG	-1	True	NA	NA	False	NA	NA	NA	57782195	57893158	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_57782323_57854561_57857038_57892868
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062599	chr4	+	2850	3	NNC	ENSMUSG00000038729.25	novel	6830	4	NA	NA	0	-3825	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	7	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAGCGAAGCAAACA	-5	True	NA	NA	False	AATACA	-45	NA	57845247	57893157	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_57845333_57854561_57857038_57892868
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062606	chr4	+	3035	4	NNC	ENSMUSG00000038729.25	novel	6830	4	NA	NA	3	-3821	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	6.94422221866655	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAGCGAAGCAAACAGGAT	-2	True	NA	NA	False	NA	NA	NA	57845250	57893161	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_57845338_57854561_57857038_57883023_57883203_57892868
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062617	chr4	+	211	1	Intergenic	novelGene_258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGTGAACTTAGAGCCAAA	NA	False	NA	NA	False	NA	NA	NA	58164233	58164444	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_58164200_58164400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062636	chr4	-	2249	4	NNC	ENSMUSG00000038668.15	novel	3437	4	NA	NA	-103	-1143	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_3	104.818361411009	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCTGATATACGACCTG	27	False	NA	NA	False	NA	NA	NA	58553731	58436397	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_58437635_58486476_58487225_58504621_58504782_58553627
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062659	chr4	+	242	1	Intergenic	novelGene_259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTAGGGCCATGCAGTG	223	False	NA	NA	False	NA	NA	NA	59197785	59198027	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_59197800_59198000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062665	chr4	-	2428	14	ISM	ENSMUSG00000038578.16	ENSMUST00000040166.14	3295	17	262	14524	262	3	5prime_fragment	FALSE	canonical	3	63	junction_6	11.6248051456597	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGCATTTACCTTTCT	14	True	NA	NA	False	NA	NA	NA	59438371	59329206	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_-_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59365721_59365915_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062671	chr4	-	3592	14	FSM	ENSMUSG00000028382.16	ENSMUST00000030076.12	6855	14	76	3187	-4	204	multi-exon	FALSE	canonical	3	119	junction_2	23.0463900573291	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGTATAAGCTGAAAGATAA	1	True	NA	NA	False	NA	NA	NA	59549288	59475054	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524394_59524477_59549147
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062684	chr4	+	2746	4	FSM	ENSMUSG00000045071.15	ENSMUST00000070150.11	10856	4	0	8110	0	290	multi-exon	FALSE	canonical	3	63	junction_2	17.7200451466693	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTGAGTAGTTACTTAA	-11	True	NA	NA	False	NA	NA	NA	59626210	59753329	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_59626492_59690143_59691339_59737561_59737735_59752232
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062695	chr4	-	3160	4	FSM	ENSMUSG00000038544.15	ENSMUST00000107526.8	1438	4	-62	-1660	-4	0	multi-exon	FALSE	canonical	3	138	junction_3	91.8416511659546	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTACTGCATATGTTAA	-32	True	NA	NA	False	NA	NA	NA	59783870	59769636	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59783727
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062709	chr4	+	2316	8	ISM	ENSMUSG00000028385.15	ENSMUST00000030080.7	7314	9	0	9228	0	955	5prime_fragment	FALSE	canonical	3	98	junction_2	9.81876587282262	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGACCTCAGAGTTAGCAT	-32	True	NA	NA	False	TTTAAA	-10	NA	59805839	59895509	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_+_59806226_59857444_59857637_59868237_59868349_59879221_59879381_59884979_59885176_59886406_59886607_59892461_59892549_59894524
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062716	chr4	+	813	1	NIC	ENSMUSG00000028385.15	novel	7314	9	NA	NA	0	-27454	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGAGTTAATGGCTAATG	-32	True	NA	NA	False	NA	NA	NA	59805839	59806652	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_59805800_59806700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062724	chr4	+	1840	4	FSM	ENSMUSG00000066152.12	ENSMUST00000084530.9	1820	4	-19	-1	-19	1	multi-exon	FALSE	canonical	3	73	junction_3	15.369522511198	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTGTTGGTCCGTTTCT	NA	False	NA	10	True	AATAAA	-21	NA	62204666	62216649	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_62204812_62210868_62210936_62214123_62214314_62215211
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062766	chr4	+	2189	6	FSM	ENSMUSG00000028392.16	ENSMUST00000107449.4	2167	6	-20	-2	-20	2	multi-exon	FALSE	canonical	3	15	junction_5	4.63033476111609	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTGCTGGTAACTGGC	9536	False	NA	30	True	AATAAA	-41	NA	62398269	62415537	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_62398675_62400854_62400954_62404649_62404881_62406422_62406449_62412969_62413095_62414234
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062770	chr4	-	1405	12	FSM	ENSMUSG00000028393.11	ENSMUST00000030090.4	1206	12	-197	-2	-197	2	multi-exon	FALSE	canonical	3	554	junction_1	45.4718149012465	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCCTCTTCCTGCCC	NA	False	NA	1	True	AGTAAA	-20	NA	62438352	62427403	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438096
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062776	chr4	-	1844	4	FSM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	-42	3	-42	-3	multi-exon	FALSE	canonical	3	309	junction_3	9.56846672960488	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGACTCATACAATGTGC	NA	False	NA	-2	True	AATAAA	-19	NA	62443347	62440888	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_62442348_62442554_62442674_62442986_62443073_62443167
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062782	chr4	+	4306	23	NIC	ENSMUSG00000059810.19	novel	2072	18	NA	NA	-92	-1	combination_of_known_junctions	TRUE	canonical	2	39	junction_18	14.1957973061405	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTCTGTGTATTCCTGG	NA	False	NA	0	True	AATAAA	-20	NA	62501745	62621254	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525845_62525915_62533537_62533599_62534710_62534802_62535311_62535368_62542081_62542164_62543333_62543440_62543978_62544331_62544728_62544769_62549360_62549558_62552682_62552767_62558953_62559066_62564920_62564965_62570950_62571074_62607735_62608864_62615507_62615570_62618234_62618337_62618590_62618653_62619270_62619438_62620296
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062797	chr4	+	1095	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	-7	47	-7	-47	multi-exon	FALSE	canonical	3	4249	junction_2	22.5	1558	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGCTCCTTTTTTTTG	NA	False	NA	NA	False	AGTAAA	-21	NA	63463001	63468940	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_63463237_63466821_63466923_63468181
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062809	chr4	+	3765	10	FSM	ENSMUSG00000045917.18	ENSMUST00000077709.11	3765	10	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	11.4901997962622	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGTAAGGGACCATGTT	NA	False	NA	18	True	AATAAA	-18	NA	63477017	63504594	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_63477195_63479148_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63502022
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062814	chr4	+	3185	2	FSM	ENSMUSG00000051675.14	ENSMUST00000050850.14	3194	2	9	0	9	0	multi-exon	FALSE	canonical	3	75	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTCATGTCTTAATT	NA	False	NA	20	True	AATAAA	-21	NA	65523231	65534475	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_65523307_65531365
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062820	chr4	+	3170	2	FSM	ENSMUSG00000051675.14	ENSMUST00000107366.2	3191	2	21	0	21	0	multi-exon	FALSE	canonical	3	41	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTCATGTCTTAATT	NA	False	NA	20	True	AATAAA	-21	NA	65523243	65534475	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_65523307_65531368
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062825	chr4	+	3109	1	NIC	ENSMUSG00000051675.14	novel	3194	2	NA	NA	7878	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGATGGTCATGTCTTA	NA	False	NA	17	True	AATAAA	-18	NA	65531363	65534472	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_65531400_65534500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062836	chr4	-	898	2	Genic_Genomic	ENSMUSG00000046341.6	novel	450	1	NA	NA	-94	456	multi-exon	FALSE	canonical	2	29	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAGGGAAGGATGTGAT	NA	False	NA	NA	False	AATAAA	-43	NA	69844410	69843410	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr4_-_69844194_69844295
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062840	chr4	-	921	1	FSM	ENSMUSG00000046341.6	ENSMUST00000120560.2	450	1	-94	-377	-94	377	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCACCAGATGCTACTGTA	NA	False	NA	NA	False	NA	NA	NA	69844410	69843489	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_69843500_69844400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062886	chr4	-	765	2	FSM	ENSMUSG00000028398.9	ENSMUST00000030103.9	741	2	-21	-3	-21	3	multi-exon	FALSE	canonical	3	402	junction_1	0	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTCTTTTAATTTTTCT	NA	False	NA	NA	False	AATAAA	-19	NA	75196563	75195587	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_75196007_75196217
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062907	chr4	+	950	6	FSM	ENSMUSG00000028483.14	ENSMUST00000071544.11	942	6	-10	2	-3	-2	multi-exon	FALSE	canonical	3	396	junction_3	22.8875512014719	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGTTTCTAGTCCCCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	83335957	83360321	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062923	chr4	-	1864	11	FSM	ENSMUSG00000028484.17	ENSMUST00000107215.9	1898	11	34	0	29	0	multi-exon	FALSE	canonical	3	354	junction_1	432.133081353418	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATTTTTAGGTATTTTT	NA	False	NA	94	True	AATAAA	-19	NA	83404661	83380107	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_83380711_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062927	chr4	-	1944	11	FSM	ENSMUSG00000028484.17	ENSMUST00000107214.9	1973	11	29	0	29	0	multi-exon	FALSE	canonical	3	116	junction_1	501.525034270474	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATTTTTAGGTATTTTT	NA	False	NA	94	True	AATAAA	-19	NA	83404661	83380107	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_83380791_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062940	chr4	+	2837	9	FSM	ENSMUSG00000028488.16	ENSMUST00000030212.15	2822	9	-15	0	-15	0	multi-exon	FALSE	canonical	3	246	junction_4	17.2191753577226	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGCTTCTGCTTCTTCC	NA	False	NA	28	True	AATAAA	-18	NA	85123662	85307617	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_85123859_85265360_85265430_85273563_85273637_85294577_85294722_85295630_85295765_85297488_85297648_85299641_85299746_85304026_85304158_85305790
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062957	chr4	-	1744	8	FSM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	12	132	12	-132	multi-exon	FALSE	canonical	3	453	junction_2	61.6944412539141	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGGTCTGAGCAGGC	NA	False	NA	-12	True	AATAAA	-24	NA	86588285	86574933	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_86575642_86576817_86576953_86578324_86578507_86580170_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86588181
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000062986	chr4	+	2557	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	248	-8	248	8	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATACTTGAGCGTTTGT	5296	False	NA	NA	False	NA	NA	NA	89055606	89099326	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063000	chr4	-	2121	6	FSM	ENSMUSG00000028578.9	ENSMUST00000030313.9	2107	6	-9	-5	-9	5	multi-exon	FALSE	canonical	3	225	junction_2	22.29798197147	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTTTTGCTTCATTAC	NA	False	NA	NA	False	AATAAA	-27	NA	94445042	94388312	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_94389654_94409298_94409373_94437355_94437432_94438658_94438744_94439501_94439703_94444698
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063058	chr4	+	3489	9	FSM	ENSMUSG00000028560.12	ENSMUST00000091358.11	3527	9	38	0	38	0	multi-exon	FALSE	canonical	3	170	junction_1	145.930152384625	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGATTTTTTTTTTTAA	NA	False	NA	18	True	AATAAA	-24	NA	98812153	98823780	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_98812481_98814672_98814912_98816470_98816592_98817100_98817206_98817930_98818092_98819096_98819786_98820422_98820594_98821060_98821263_98822306
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063080	chr4	-	795	9	FSM	ENSMUSG00000028549.18	ENSMUST00000146258.2	2806	9	28	1983	-24	-54	multi-exon	FALSE	canonical	3	74	junction_5	47.6377935572167	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATATGCCTGTATG	NA	False	NA	4	True	AATAAA	-35	NA	99717395	99655621	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99690333_99690470_99702294_99702338_99717319
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063083	chr4	+	2350	11	FSM	ENSMUSG00000025791.19	ENSMUST00000058351.16	2371	11	21	0	21	0	multi-exon	TRUE	canonical	3	174	junction_5	14.102836594104	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGTCGCTTTTATTC	NA	False	NA	16	True	ATTAAA	-19	NA	99786631	99844491	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_99787009_99818652_99818816_99819240_99819388_99820714_99820841_99821871_99822063_99824255_99824411_99827183_99827300_99836061_99836198_99839080_99839265_99841165_99841301_99843871
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063095	chr4	+	2511	1	Genic_Genomic	ENSMUSG00000028532.15	novel	NA	NA	NA	NA	-3	-223879	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGAGTCGGTGGGGTGGG	NA	False	NA	NA	False	AAGAAA	-9	NA	100633868	100636379	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr4_+_100633900_100636400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063100	chr4	-	4910	25	NNC	ENSMUSG00000028530.15	novel	4906	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	41.4274591907348	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATATGCCTTTTAATA	NA	False	NA	-7	True	AATAAA	-17	NA	101122479	101009563	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_101010788_101011734_101011846_101012212_101012331_101013589_101013763_101014148_101014274_101014950_101015144_101016010_101016106_101016211_101016363_101017228_101017381_101019003_101019140_101020045_101020174_101020854_101020943_101021650_101021799_101023739_101023847_101028431_101028619_101031282_101031407_101032270_101032429_101034764_101034954_101036651_101036992_101038976_101039141_101041533_101041688_101046275_101046400_101048671_101048871_101050979_101051061_101122238
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063126	chr4	+	1903	4	FSM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	-5	0	-5	0	multi-exon	FALSE	canonical	3	539	junction_3	48.8011839564939	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8210	False	NA	8	True	AATAAA	-20	NA	101504909	101516561	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063163	chr4	+	1934	1	FSM	ENSMUSG00000059195.11	ENSMUST00000121430.2	1128	1	-78	-728	-78	728	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTCAAGAGATATGAAT	NA	False	NA	NA	False	NA	NA	NA	103420520	103422454	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_103420500_103422500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063166	chr4	+	1738	2	Genic_Genomic	ENSMUSG00000059195.11	novel	1128	1	NA	NA	-26	728	multi-exon	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTCAAGAGATATGAAT	NA	False	NA	NA	False	NA	NA	NA	103420572	103422454	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr4_+_103421939_103422082
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063174	chr4	+	207	1	Intergenic	novelGene_260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTGAGCGAGCGTGTGC	NA	False	NA	NA	False	NA	NA	NA	104664150	104664357	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_104664200_104664400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063183	chr4	+	3257	6	FSM	ENSMUSG00000028517.9	ENSMUST00000064139.8	3159	6	-97	-1	-97	1	multi-exon	FALSE	canonical	3	181	junction_2	17.8616908494129	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGGTGCCTGAGCTGTT	NA	False	NA	14	True	AATAAA	-24	NA	105014446	105089962	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_105015161_105051999_105052158_105065720_105066002_105066396_105066455_105076524_105076702_105088093
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063193	chr4	+	4047	9	FSM	ENSMUSG00000034926.4	ENSMUST00000047973.4	4028	9	-18	-1	-18	1	multi-exon	FALSE	canonical	3	318	junction_6	36.7353287041235	399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTGTCATTTATTCAGA	NA	False	NA	19	True	AATAAA	-19	NA	106418216	106446311	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_106418595_106421597_106421754_106428608_106428715_106429421_106429541_106430924_106431189_106435386_106435531_106442986_106443185_106443541_106443721_106443808
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063203	chr4	-	2057	8	ISM	ENSMUSG00000054362.10	ENSMUST00000106788.2	1569	10	1445	-400	1445	-1	3prime_fragment	FALSE	canonical	1	5	junction_3	4.52656557650139	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCGGTTCTACCAGTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	106472990	106448106	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_-_106448885_106464485_106464620_106467596_106467723_106468609_106468772_106470305_106470450_106470564_106470700_106472231_106472355_106472535
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063212	chr4	+	2200	2	FSM	ENSMUSG00000043572.8	ENSMUST00000058905.8	2191	2	-9	0	-1	0	multi-exon	FALSE	canonical	3	40	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGTGTGTGTGTGTG	NA	False	NA	5	True	AATAAA	-20	NA	106508293	106512479	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_106508329_106510314
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063241	chr4	+	2224	18	FSM	ENSMUSG00000061887.15	ENSMUST00000030367.15	3195	18	-27	998	-27	4	multi-exon	TRUE	canonical	3	121	junction_13	39.9235428457496	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTGGTTTATTTCAAAAG	NA	False	NA	16	True	AATAAA	-16	NA	106768639	106905893	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_106769110_106770099_106770173_106770401_106770464_106772841_106772927_106866875_106866966_106884413_106884495_106885389_106885450_106888058_106888126_106888211_106888289_106894132_106894198_106894798_106894848_106895418_106895455_106895922_106895978_106897159_106897231_106903512_106903592_106904438_106904468_106904560_106904663_106905220
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063252	chr4	-	1497	7	FSM	ENSMUSG00000028622.12	ENSMUST00000030365.6	1498	7	2	-1	2	1	multi-exon	FALSE	canonical	3	549	junction_3	34.5976877840124	289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTCTGTGAGATATTAG	NA	False	NA	-7	True	AATAAA	-24	NA	106924063	106913069	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063288	chr4	+	197	1	Intergenic	novelGene_261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGCATTCTGGAAGAAAA	NA	False	NA	NA	False	AAGAAA	-1	NA	107224457	107224654	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_107224500_107224700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063311	chr4	+	1394	8	FSM	ENSMUSG00000028608.16	ENSMUST00000135454.8	2997	8	22	1581	10	1	multi-exon	FALSE	canonical	3	475	junction_1	98.5130261769001	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTGTGTATTTATGTG	NA	False	NA	24	True	NA	NA	NA	107747031	107755000	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063321	chr4	-	2370	5	FSM	ENSMUSG00000028607.17	ENSMUST00000030345.15	2372	5	3	-1	3	1	multi-exon	FALSE	canonical	3	130	junction_2	11.5866302262565	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCCTTTTTCCTTAT	NA	False	NA	1	True	AATAAA	-19	NA	107780804	107761176	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_107761761_107764117_107765423_107769837_107769945_107771460_107771542_107780511
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063343	chr4	+	1546	10	FSM	ENSMUSG00000028601.19	ENSMUST00000130942.8	1319	10	10	-237	10	0	multi-exon	FALSE	canonical	3	90	junction_3	222.335582197522	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	24	True	AATAAA	-17	NA	108022672	108036505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063445	chr4	-	2806	23	NNC	ENSMUSG00000028559.18	novel	2408	23	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	118.53859607879	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	False	NA	-1	True	CATAAA	-25	NA	109059434	108918846	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923057_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063505	chr4	+	955	3	Intergenic	novelGene_262	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	21.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGGAGCATGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	109862637	109866106	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_109862813_109864517_109864840_109865648
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063522	chr4	-	1907	6	FSM	ENSMUSG00000028719.9	ENSMUST00000030491.9	3170	6	-10	1273	-10	-1273	multi-exon	FALSE	canonical	3	519	junction_1	39.0302446828098	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTCTTTTTTCTTTTTT	NA	False	NA	24	True	AATAAA	-43	NA	114844448	114817805	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_114818953_114820261_114820359_114820552_114820630_114822079_114822233_114826414_114826562_114844162
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063527	chr4	+	5273	17	NNC	ENSMUSG00000028718.17	novel	5368	18	NA	NA	0	7	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	18.4373940674923	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTTCTCTTCACTGAAT	NA	False	NA	NA	False	ATTAAA	-24	NA	114857378	114900400	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_114857545_114860044_114860130_114862069_114862178_114863878_114863992_114864332_114864521_114866467_114866716_114867260_114867345_114868990_114869082_114871270_114871422_114873368_114873485_114878671_114878787_114880678_114881615_114887065_114887235_114889839_114890069_114895534_114895728_114896264_114896516_114898370
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063579	chr4	-	2234	6	FSM	ENSMUSG00000028706.15	ENSMUST00000030475.3	2439	6	42	163	42	0	multi-exon	FALSE	canonical	3	114	junction_2	15.8417170786503	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGTGTGCGTGCCTTG	NA	False	NA	-6	True	AGTAAA	-17	NA	115911031	115890201	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_115891509_115892948_115893074_115897265_115897427_115901881_115902037_115905526_115905862_115910880
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063585	chr4	-	558	4	FSM	ENSMUSG00000063882.13	ENSMUST00000078676.6	547	4	-10	-1	-10	1	multi-exon	FALSE	canonical	3	1017	junction_2	25.9272486435067	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGTCCTTCCTTTGCCA	7647	False	NA	-6	True	AATAAA	-18	NA	115932278	115924160	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_115924370_115927059_115927222_115927933_115927955_115932112
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063593	chr4	+	2976	10	NNC	ENSMUSG00000028703.15	novel	3065	10	NA	NA	82	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	66.7007320373696	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCCTTCTTGATGATT	NA	False	NA	9	True	AATAAA	-17	NA	115932547	115954240	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_115932798_115936585_115936673_115937745_115937817_115945643_115946767_115950068_115950330_115952073_115952239_115952329_115952429_115952988_115953112_115953339_115953416_115953519
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063595	chr4	+	2983	10	FSM	ENSMUSG00000028703.15	ENSMUST00000030471.9	3065	10	82	0	82	0	multi-exon	FALSE	canonical	3	193	junction_3	24.5573151707401	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCCTTCTTGATGATT	NA	False	NA	9	True	AATAAA	-17	NA	115932547	115954240	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_115932805_115936585_115936673_115937745_115937817_115945643_115946767_115950068_115950330_115952073_115952239_115952329_115952429_115952988_115953112_115953339_115953416_115953519
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063610	chr4	-	2913	19	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	1	20	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGGCCTGGGAACACATT	NA	False	NA	-35	True	NA	NA	NA	115980886	115954151	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980675
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063613	chr4	-	2744	19	FSM	ENSMUSG00000028702.16	ENSMUST00000102705.10	2780	19	-3	39	2	20	multi-exon	FALSE	canonical	3	169	junction_18	87.8901706606913	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGGCCTGGGAACACATT	NA	False	NA	-35	True	NA	NA	NA	115980885	115954151	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980675
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063621	chr4	-	2976	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	1	18	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_18	118.034272591366	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGAGGCCTGGGAACACA	NA	False	NA	-37	True	NA	NA	NA	115980886	115954153	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980610
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063655	chr4	+	194	1	Intergenic	novelGene_263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCAAGTCCAATGGGCC	8286	False	NA	NA	False	NA	NA	NA	116132117	116132311	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_116132100_116132300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063659	chr4	+	4651	9	FSM	ENSMUSG00000028696.13	ENSMUST00000106479.8	2118	9	58	-2591	55	2583	multi-exon	FALSE	canonical	3	65	junction_7	9.43977621556783	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGGAAATGTCAGTATG	NA	False	NA	26	True	ATTAAA	-18	NA	116364803	116398023	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867_116387006_116387609_116387733_116389754_116389976_116394996
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063676	chr4	-	3101	15	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	439	-560	-5	3	3prime_fragment	TRUE	canonical	3	774	junction_12	215.450595691155	279	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTGTTCTGGAATTATA	NA	False	NA	NA	False	AATAAA	-19	NA	116484699	116458245	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063729	chr4	+	3040	11	FSM	ENSMUSG00000033985.18	ENSMUST00000045542.13	3033	11	2	-9	2	9	multi-exon	FALSE	canonical	3	31	junction_7	8.01810451416044	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGATTTTGCTGTATAGCT	NA	False	NA	12	True	ATTAAA	-25	NA	116578146	116661448	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_116578454_116598812_116599116_116608301_116608424_116628996_116629046_116649284_116649432_116657729_116657813_116658356_116658442_116658645_116658730_116658916_116659004_116659420_116659539_116659793
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063738	chr4	-	2064	8	FSM	ENSMUSG00000028688.14	ENSMUST00000030451.10	2090	8	27	-1	-7	1	multi-exon	FALSE	canonical	3	103	junction_2	11.8252583351856	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTGGTTATTTCTTATCG	1966	False	NA	1	True	TTTAAA	-43	NA	116664810	116661197	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063776	chr4	+	1557	12	FSM	ENSMUSG00000028683.15	ENSMUST00000106448.9	1555	12	-2	0	-2	0	multi-exon	TRUE	canonical	3	567	junction_7	49.9305302519377	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCAGTGGTAGAG	NA	False	NA	20	True	AATAAA	-20	NA	116876596	116944049	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116938754_116938859_116943885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063786	chr4	+	223	1	Intergenic	novelGene_264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGAGAGAACAGTGTACT	NA	False	NA	NA	False	NA	NA	NA	116916736	116916959	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_116916700_116917000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063814	chr4	-	2775	20	FSM	ENSMUSG00000028678.14	ENSMUST00000065896.9	2842	20	72	-5	-25	5	multi-exon	FALSE	canonical	3	415	junction_14	29.7897526488705	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTCTGTGTGATTATC	NA	False	NA	93	True	AATAAA	-22	NA	117039764	117016830	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063843	chr4	-	1892	11	NNC	ENSMUSG00000028677.20	novel	1949	11	NA	NA	-9	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	357.390878451032	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9561	False	NA	NA	False	ATTAAA	-14	NA	117146652	117128660	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134935_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222_117146266_117146399
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063847	chr4	-	1899	11	NNC	ENSMUSG00000028677.20	novel	3029	15	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	375.814528723944	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9558	False	NA	NA	False	ATTAAA	-14	NA	117146655	117128660	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134935_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222_117146266_117146395
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063855	chr4	-	3127	15	NNC	ENSMUSG00000028677.20	novel	3029	15	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	470.819758398009	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	NA	False	NA	NA	False	ATTAAA	-14	NA	117354262	117128660	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134935_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117153328_117153431_117156741_117156788_117164742_117164876_117346785_117347528_117353875
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063900	chr4	+	1707	9	NNC	ENSMUSG00000033423.17	novel	1719	9	NA	NA	-10	0	at_least_one_novel_splicesite	TRUE	canonical	3	89	junction_2	238.585938395371	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGTGTCTGGAGCCA	NA	False	NA	9	True	AATAAA	-16	NA	117407551	117531478	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_117407928_117410164_117410241_117421823_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063913	chr4	-	1570	11	NNC	ENSMUSG00000009640.12	novel	1566	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	82.0646086933947	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGTTTCCTCACTTCC	NA	False	NA	-35	True	AATAGA	-20	NA	117539470	117531877	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538466_117538563_117539029_117539180_117539410
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000063936	chr4	-	1036	8	FSM	ENSMUSG00000033379.14	ENSMUST00000036380.14	1000	8	-35	-1	-31	1	multi-exon	FALSE	canonical	3	2123	junction_7	187.196393650942	517	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGGCTTCTGTTGGCCCCT	NA	False	NA	0	True	AATAAA	-22	NA	117744561	117741521	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064039	chr4	-	4635	22	FSM	ENSMUSG00000033326.16	ENSMUST00000106406.9	4663	22	24	4	24	-2	multi-exon	FALSE	canonical	3	48	junction_21	11.6270464270502	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGATTGACTGTGGTCTG	NA	False	NA	-5	True	AATAAA	-12	NA	118037216	117994157	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581_118025776_118027118_118027234_118032750_118032927_118034591_118034774_118037089
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064100	chr4	+	2515	10	NNC	ENSMUSG00000028645.12	novel	3260	10	NA	NA	-4	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	222.325087303355	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCAAATGCTTGTG	665	False	NA	36	True	TATAAA	-18	NA	118965996	118994527	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990454_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064101	chr4	+	2515	10	NNC	ENSMUSG00000028645.12	novel	3260	10	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	221.045495568471	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCAAATGCTTGTG	665	False	NA	36	True	TATAAA	-18	NA	118965996	118994527	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_118966170_118977590_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064111	chr4	+	2606	9	NIC	ENSMUSG00000028645.12	novel	2241	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	565	junction_3	56.7735358683956	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCAAATGCTTGTG	669	False	NA	36	True	TATAAA	-18	NA	118966000	118994527	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064117	chr4	+	2518	10	NNC	ENSMUSG00000028645.12	novel	3260	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	221.045495568471	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCAAATGCTTGTG	669	False	NA	36	True	TATAAA	-18	NA	118966000	118994527	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_118966174_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064119	chr4	-	1574	2	FSM	ENSMUSG00000045268.14	ENSMUST00000106355.5	1588	2	11	3	11	0	multi-exon	FALSE	canonical	3	13	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTGTGTACTTATTTGG	NA	False	NA	-1	True	AGTAAA	-16	NA	119031381	119026712	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_119028240_119031334
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064152	chr4	-	2227	8	FSM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	56	-655	-48	655	multi-exon	FALSE	canonical	3	9851	junction_2	327.608589257214	9302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGATTGTGTTTAATAT	NA	False	NA	NA	False	NA	NA	NA	119151745	119134522	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064159	chr4	-	1539	8	NIC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	-1	2	combination_of_known_junctions	FALSE	canonical	3	262	junction_2	3531.96674123986	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTTTTGTCATAATTGA	NA	False	NA	NA	False	AATAAA	-18	NA	119151698	119135175	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_119135565_119136130_119136409_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064164	chr4	-	1464	8	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3612.9610898451	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	AATAAA	-16	NA	119151697	119135177	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151460
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064169	chr4	-	1503	7	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3852.6583030422	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	AATAAA	-16	NA	119151697	119135177	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119150925_119151003_119151400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064170	chr4	-	1434	7	NIC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	192	junction_4	3779.60040877339	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	AATAAA	-16	NA	119151697	119135177	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119142305_119142340_119150938_119151003_119151400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064198	chr4	-	1452	3	FSM	ENSMUSG00000028636.15	ENSMUST00000030385.13	1443	3	-6	-3	-6	3	multi-exon	FALSE	canonical	3	273	junction_2	22	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGTTTCTGGTTTTTTGTT	5499	False	NA	-1	True	AATAAA	-33	NA	119279623	119275723	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_119276491_119278776_119278881_119279042
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064207	chr4	+	233	1	Intergenic	novelGene_265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTATGTCCTATTTCT	NA	False	NA	NA	False	AAAAAG	-36	NA	119390222	119390455	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_119390200_119390500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064216	chr4	-	2743	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	-35	-3	-35	3	multi-exon	TRUE	canonical	3	663	junction_8	52.1791784782653	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTTTCTCTTGTCACT	NA	False	NA	-15	True	AATAAA	-17	NA	120427508	120397061	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064220	chr4	-	3490	19	NNC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	292	2	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_18	179.180610999139	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGCTTTCTCTTGTCAC	NA	False	NA	-16	True	AATAAA	-16	NA	120427181	120397062	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120426272
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064234	chr4	+	1251	1	FSM	ENSMUSG00000070803.7	ENSMUST00000094814.6	1249	1	-2	0	-2	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAGTTTCCATTTCCTT	6117	False	NA	9	True	AATAAA	-18	NA	120523766	120525017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_120523800_120525000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064236	chr4	-	2021	10	FSM	ENSMUSG00000032897.18	ENSMUST00000043429.12	1932	10	-86	-3	-85	3	multi-exon	TRUE	canonical	3	393	junction_8	23.5424491839793	343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGGGACATTCAT	NA	False	NA	2	True	AATAAA	-23	NA	120682989	120614631	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064280	chr4	+	2693	31	NNC	ENSMUSG00000028626.6	novel	2924	32	NA	NA	-137	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	13.1324872823933	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTCTTGTGGATGAGG	NA	False	NA	21	True	AATAAA	-22	NA	120896807	120912519	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_120896984_120898161_120898237_120899490_120899527_120899612_120899676_120900892_120900947_120901058_120901095_120901452_120901526_120901861_120901916_120902019_120902068_120902195_120902253_120902337_120902392_120902680_120902735_120903122_120903177_120903266_120903321_120903425_120903480_120906858_120906913_120907272_120907327_120907551_120907606_120908410_120908456_120908847_120908902_120909164_120909219_120909423_120909478_120909554_120909627_120909777_120909814_120909949_120909995_120910087_120910121_120910254_120910402_120910635_120910691_120910966_120911156_120911449_120911528_120911792
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064293	chr4	-	3436	10	FSM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	-7	0	-7	0	multi-exon	FALSE	canonical	3	242	junction_3	24.0005143977796	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCCTGGTGTTGGGTTTGA	NA	False	NA	-1	True	ATTAAA	-20	NA	120955445	120916433	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120952748_120952896_120955073
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064376	chr4	+	3334	3	FSM	ENSMUSG00000028654.14	ENSMUST00000106252.9	3293	3	-41	0	-41	0	multi-exon	FALSE	canonical	3	37	junction_1	34.5	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGAGTGGGGGTAGCAT	3430	False	NA	NA	False	AATAAA	-18	NA	122889695	122896278	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_122889944_122890306_122890812_122893697
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064395	chr4	-	1253	10	NIC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	6	0	combination_of_known_junctions	TRUE	canonical	3	113	junction_6	304.035816603534	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033738	123020907	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030593_123030692_123031318_123031363_123032658_123032758_123033694
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064420	chr4	+	3146	15	FSM	ENSMUSG00000011257.20	ENSMUST00000080178.13	3019	15	-127	0	-41	0	multi-exon	FALSE	canonical	3	253	junction_1	59.8703105189263	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATGCCAGTTTTATGTT	NA	False	NA	8	True	AATAAA	-31	NA	123176576	123192625	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064427	chr4	+	3086	15	FSM	ENSMUSG00000011257.20	ENSMUST00000106241.8	3050	15	-46	10	-39	0	multi-exon	FALSE	canonical	3	39	junction_10	103.994922364272	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGCTGAATTTGATGCCA	NA	False	NA	-2	True	AATAAA	-21	NA	123176578	123192615	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189067_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064462	chr4	-	546	3	FSM	ENSMUSG00000028648.14	ENSMUST00000106206.8	599	3	45	8	40	-8	multi-exon	FALSE	canonical	3	65	junction_2	1021.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTTAGTCTGTTTGCTT	1893	False	NA	-33	True	AATAAA	-9	NA	123611934	123606510	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_123606720_123609656_123609875_123611815
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064477	chr4	+	2615	7	FSM	ENSMUSG00000028646.17	ENSMUST00000030399.7	2593	7	-22	0	-22	0	multi-exon	FALSE	canonical	3	488	junction_1	23.3553467587664	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGTTGTGTGATGTGT	NA	False	NA	20	True	AATAAA	-20	NA	123811216	123830790	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_123811561_123813641_123813846_123814743_123814944_123817752_123817868_123818539_123818683_123823624_123823774_123829330
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064491	chr4	-	1227	8	FSM	ENSMUSG00000028907.8	ENSMUST00000030738.8	1603	8	0	376	0	261	multi-exon	FALSE	canonical	3	1259	junction_4	134.593264834372	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGTAAAGTCCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	124587393	124572328	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064500	chr4	+	3013	18	ISM	ENSMUSG00000028894.19	ENSMUST00000094782.10	3809	24	9730	0	9702	0	3prime_fragment	FALSE	canonical	3	118	junction_11	23.4933547256022	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGGTTCTCTCTTTTTTT	NA	False	NA	22	True	AATATA	-30	NA	124645372	124695304	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_+_124645486_124671133_124671231_124674163_124674332_124676182_124676285_124677680_124677796_124678103_124678221_124678965_124679154_124680310_124680423_124681264_124681375_124682861_124682998_124685298_124685410_124685985_124686149_124686966_124687203_124689148_124689263_124691617_124691703_124692044_124692173_124693560_124693673_124694498
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064518	chr4	-	754	3	FSM	ENSMUSG00000078570.11	ENSMUST00000125776.8	761	3	2	5	2	-1	multi-exon	FALSE	canonical	3	59	junction_2	71	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGTGACTGACCTTTCT	7726	False	NA	-8	True	ATTAAA	-15	NA	124744452	124743283	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_124743756_124744024_124744227_124744372
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064536	chr4	-	1614	10	FSM	ENSMUSG00000028873.17	ENSMUST00000084296.10	1626	10	10	2	10	-2	multi-exon	FALSE	canonical	3	1430	junction_6	123.940846105444	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCCTCGGTCATCTGCA	NA	False	NA	-12	True	AATAAA	-24	NA	124830700	124812259	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064547	chr4	+	2368	16	FSM	ENSMUSG00000028869.14	ENSMUST00000030684.8	2366	16	6	-8	6	4	multi-exon	FALSE	canonical	3	650	junction_4	51.4673575083168	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTCGCTTTCTTGTGC	NA	False	NA	32	True	ATTAAA	-26	NA	124923790	124949177	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064580	chr4	+	202	1	Intergenic	novelGene_266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTAGCCTCAATCCAGA	4417	False	NA	NA	False	NA	NA	NA	125449773	125449975	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_125449800_125450000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064597	chr4	+	3511	11	FSM	ENSMUSG00000042608.16	ENSMUST00000094761.11	3492	11	-17	-2	-2	2	multi-exon	TRUE	canonical	3	325	junction_5	16.9944108459223	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTAGCCTGCCTCTGTG	NA	False	NA	24	True	AATAAA	-25	NA	125997747	126034824	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_125997940_126017508_126017629_126018875_126018962_126019467_126019612_126022611_126022840_126023490_126023544_126028804_126028921_126030562_126030708_126030869_126030990_126031553_126031639_126032602
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064639	chr4	-	3863	12	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_7	237.221554913761	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6764	False	NA	-3	True	AATAAA	-28	NA	126096463	126057874	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126072167_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064663	chr4	-	3165	17	NIC	ENSMUSG00000028849.18	novel	3249	18	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_12	51.2541156884011	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	0	True	AATAAA	-21	NA	126150097	126125959	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126130853_126130948_126131072_126133815_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064682	chr4	-	3363	17	NIC	ENSMUSG00000028849.18	novel	3351	17	NA	NA	-21	0	intron_retention	FALSE	canonical	3	52	junction_12	62.4189474438652	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	0	True	AATAAA	-21	NA	126150097	126125959	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126131072_126132314_126132426_126133824_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064697	chr4	+	1304	5	FSM	ENSMUSG00000028847.9	ENSMUST00000030660.9	1336	5	32	0	32	0	multi-exon	FALSE	canonical	3	345	junction_3	21.2882009573378	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCCTGTTTTCCTTCT	7657	False	NA	45	True	AATAAA	-25	NA	126156149	126169676	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_126156331_126166470_126166569_126166767_126166868_126167682_126167866_126168934
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064708	chr4	-	2057	4	FSM	ENSMUSG00000042558.17	ENSMUST00000128188.8	1826	4	-225	-6	11	1	multi-exon	FALSE	canonical	3	330	junction_1	27.3901847788988	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTCCTGTTCCTGTCTCC	7087	False	NA	NA	False	AATAAA	-21	NA	126215485	126209838	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_126210659_126211095_126211985_126212191_126212289_126215234
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064764	chr4	+	203	1	Intergenic	novelGene_267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCCTCTCCAATCAGTC	NA	False	NA	NA	False	NA	NA	NA	126877835	126878038	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_126877800_126878000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064772	chr4	+	2632	9	ISM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	-4	3145	-4	76	5prime_fragment	FALSE	canonical	3	697	junction_1	107.230403221288	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAACTGATGTTTCTACT	NA	False	NA	NA	False	NA	NA	NA	126915112	126921884	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_+_126916014_126916608_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064774	chr4	+	2275	12	NIC	ENSMUSG00000028820.14	novel	925	10	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_9	288.88503246702	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTTGTTCAAGTAGGA	NA	False	NA	18	True	AATAAA	-19	NA	126915112	126930806	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_126916014_126916608_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126929600_126929648_126930355_126930443_126930724
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064788	chr4	-	3370	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	-6	488	-6	11	multi-exon	FALSE	canonical	3	376	junction_6	26.8206438918888	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTTTGTTTGTTGGAGG	NA	False	NA	NA	False	ATTAAA	-31	NA	126954951	126941374	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064802	chr4	+	212	1	Intergenic	novelGene_268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACAGAAATACTATAAGAAT	NA	False	NA	NA	False	NA	NA	NA	126993287	126993499	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_126993300_126993500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064806	chr4	+	1126	3	FSM	ENSMUSG00000070737.11	ENSMUST00000094712.5	1120	3	-6	0	-6	0	multi-exon	FALSE	canonical	3	98	junction_2	3.5	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	7	True	TTTAAA	-4	NA	127019832	127023437	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_127019987_127021611_127021793_127022646
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064830	chr4	-	1558	2	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	1734	0	at_least_one_novel_splicesite	FALSE	canonical	2	50	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127221220	127219027	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_127220565_127221199
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064831	chr4	-	1805	2	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	632	0	at_least_one_novel_splicesite	FALSE	canonical	3	106	junction_1	0	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127224005	127219027	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_127220565_127223737
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064845	chr4	-	1844	2	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	0	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127222934	127219027	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_127220806_127222868
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064879	chr4	+	1792	7	FSM	ENSMUSG00000028792.15	ENSMUST00000102604.11	1781	7	-10	-1	-10	1	multi-exon	FALSE	canonical	3	1917	junction_3	122.234746833023	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTTGTGGAGTTTTTTG	2859	False	NA	30	True	AATAAA	-20	NA	128887006	128905323	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128902023_128904355
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064884	chr4	+	956	6	FSM	ENSMUSG00000028792.15	ENSMUST00000030583.13	986	6	30	0	30	0	multi-exon	FALSE	canonical	3	1917	junction_3	119.822535443046	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGCACTCATCTATGT	2899	False	NA	22	True	ATTAAA	-26	NA	128887046	128902194	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064899	chr4	+	198	2	Intergenic	novelGene_269	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACACCCACCAATTTCAAA	5254	False	NA	NA	False	NA	NA	NA	129040915	129041346	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_129041063_129041295
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064909	chr4	+	347	1	Intergenic	novelGene_270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATCTGACTCCCTCTTCT	699	False	NA	NA	False	NA	NA	NA	129072862	129073209	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_129072900_129073200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064953	chr4	-	1979	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	19	2409	19	8	multi-exon	TRUE	canonical	3	482	junction_1	226.647613038099	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGTGGGTTTTATTTAG	2511	False	NA	-21	True	AATAAA	-22	NA	129229144	129203301	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064965	chr4	+	209	1	Intergenic	novelGene_271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCAGACAATTAATTGAGT	617	False	NA	NA	False	NA	NA	NA	129213357	129213566	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_129213400_129213600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064984	chr4	+	204	1	Intergenic	novelGene_272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTATACAGGGTAATTAT	NA	False	NA	NA	False	NA	NA	NA	129250518	129250722	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_129250500_129250700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000064993	chr4	+	2692	11	FSM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	91	40	0	-40	multi-exon	FALSE	canonical	3	95	junction_3	13.6088206689632	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGATTTGCCATAACAGC	NA	False	NA	24	True	AATAAA	-20	NA	129355464	129382251	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_129355499_129355734_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065001	chr4	+	1553	2	FSM	ENSMUSG00000047945.7	ENSMUST00000062356.7	1605	2	46	6	46	-6	multi-exon	FALSE	canonical	3	8029	junction_1	0	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCATTGAGTGGTCTTC	NA	False	NA	18	True	AATAAA	-18	NA	129407419	129409772	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_129407710_129408509
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065005	chr4	+	2350	1	NIC	ENSMUSG00000047945.7	novel	1605	2	NA	NA	46	-9	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTTCATTGAGTGGTC	NA	False	NA	15	True	AATAAA	-15	NA	129407419	129409769	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_129407400_129409800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065009	chr4	-	2061	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	-20	-3	-20	3	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	3037	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTGGTTTAAGTTCTT	8788	False	NA	-2	True	AATAAA	-25	NA	129436526	129409893	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065039	chr4	-	1152	10	ISM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	49	14	0	-14	intron_retention	FALSE	canonical	3	1341	junction_3	45.5241083871441	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCAGGCATTTTG	6426	False	NA	-14	True	AATAAA	-18	NA	129494392	129485766	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065065	chr4	-	1261	6	NIC	ENSMUSG00000040795.13	novel	2639	5	NA	NA	-5	142	combination_of_known_junctions	TRUE	canonical	3	40	junction_1	35.7960891718635	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACGCCTTTAATCCCAG	NA	False	NA	-18	True	NA	NA	NA	129512878	129509409	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_129509881_129510753_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065089	chr4	-	5710	14	FSM	ENSMUSG00000003731.14	ENSMUST00000102590.11	5710	14	0	0	0	0	multi-exon	TRUE	canonical	3	106	junction_4	15.2943505832485	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTTCTTTGGTTTGGAG	8834	False	NA	3	True	AATAAA	-22	NA	129566560	129537772	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_129541973_129542990_129543170_129544476_129544605_129545380_129545507_129547230_129547310_129547634_129547799_129548080_129548181_129548657_129548747_129549222_129549355_129550100_129550196_129551181_129551282_129551560_129551654_129555098_129555233_129566469
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065097	chr4	-	1814	9	FSM	ENSMUSG00000053730.16	ENSMUST00000102588.10	1810	9	-1	-3	-1	3	multi-exon	FALSE	canonical	2	15	junction_6	5.99869777535091	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCCTGTGATTCTT	9991	False	NA	NA	False	AAAAAG	-24	NA	129590632	129570144	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586858_129587079_129587678_129587806_129590507
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065121	chr4	+	198	1	Intergenic	novelGene_273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGGTCATGGTG	6447	False	NA	NA	False	NA	NA	NA	129779002	129779200	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_129779000_129779200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065138	chr4	-	1972	12	FSM	ENSMUSG00000028776.15	ENSMUST00000105999.9	1952	12	-19	-1	-1	1	multi-exon	FALSE	canonical	3	185	junction_11	29.3189922368611	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTCTGGGAGTCTTCAA	NA	False	NA	NA	False	AATAAA	-20	NA	130068614	130059393	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130066724_130066789_130067685_130068001_130068515
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065166	chr4	+	222	1	Intergenic	novelGene_274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTTTACGTTTTTATT	NA	False	NA	NA	False	AAAAAG	-4	NA	130259267	130259489	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_130259300_130259500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065189	chr4	+	4057	22	FSM	ENSMUSG00000028580.16	ENSMUST00000030315.13	5389	22	45	1287	0	11	multi-exon	TRUE	canonical	3	218	junction_8	122.217214904643	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTAACTCATTTGCCTT	NA	False	NA	NA	False	NA	NA	NA	130390676	130507588	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065221	chr4	-	223	1	Intergenic	novelGene_275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTACTCCTAGGTGTA	NA	False	NA	NA	False	NA	NA	NA	130410802	130410579	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_-_130410600_130410800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065238	chr4	+	2354	6	FSM	ENSMUSG00000028911.17	ENSMUST00000053819.6	2257	6	-92	-5	-92	5	multi-exon	FALSE	canonical	3	354	junction_1	33.990586932267	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCGCTTGAATCTAAATGG	NA	False	NA	27	True	AATAAA	-27	NA	131600835	131629022	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_131601182_131618517_131618661_131619391_131619505_131624967_131625183_131627372_131627463_131627575
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065288	chr4	+	1358	6	FSM	ENSMUSG00000028899.12	ENSMUST00000030731.11	3787	6	-8	2437	-8	617	multi-exon	FALSE	canonical	3	439	junction_3	32.7987804651331	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAGTGTCCATAGGACCT	NA	False	NA	26	True	AATAAA	-22	NA	132001677	132020640	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_132001799_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065292	chr4	+	335	1	Intergenic	novelGene_276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTAGATTCAGCTTTAG	NA	False	NA	NA	False	NA	NA	NA	132031017	132031352	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_132031000_132031400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065295	chr4	+	614	5	FSM	ENSMUSG00000086290.10	ENSMUST00000153474.9	606	5	-2	-6	0	6	multi-exon	FALSE	canonical	3	139	junction_1	27.427176303805	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATTTATTTATTTATT	NA	False	NA	33	True	AATAAA	-22	NA	132035986	132038341	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761_132037816_132038144
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065300	chr4	-	1127	9	FSM	ENSMUSG00000028898.16	ENSMUST00000030730.14	1130	9	3	0	3	0	multi-exon	FALSE	canonical	3	451	junction_8	39.2324801663112	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2319	False	NA	0	True	AATAAA	-17	NA	132056846	132039073	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065319	chr4	-	2304	11	FSM	ENSMUSG00000028896.14	ENSMUST00000030726.13	2278	11	-22	-4	20	0	multi-exon	FALSE	canonical	3	61	junction_9	136.55039362814	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTTATGCGTGTCC	5459	False	NA	-10	True	AATAAA	-21	NA	132073038	132059229	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235_132067318_132072956
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065327	chr4	-	2499	13	NIC	ENSMUSG00000028896.14	novel	2326	11	NA	NA	-30	2	combination_of_known_splicesites	FALSE	canonical	3	24	junction_10	276.521347377658	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTGTTTTTATGCGTGT	NA	False	NA	-12	True	AATAAA	-19	NA	132080946	132059231	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132075310_132075432_132079432_132079555_132079973_132080010_132080907
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065332	chr4	-	2232	10	NNC	ENSMUSG00000028896.14	novel	2278	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	139.444134572476	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	5483	False	NA	-14	True	AATAAA	-17	NA	132073014	132059233	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_132060314_132061417_132061566_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065334	chr4	-	2374	12	Fusion	ENSMUSG00000085241.8_ENSMUSG00000028896.14	novel	2278	11	NA	NA	0	0	multi-exon	FALSE	canonical	2	13	junction_9	259.455819580231	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	NA	False	NA	-14	True	AATAAA	-17	NA	132080944	132059233	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132079432_132079555_132079973_132080010_132080907
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065336	chr4	-	2534	14	NIC	ENSMUSG00000028896.14	novel	2326	11	NA	NA	-28	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_11	296.744127023732	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	NA	False	NA	-14	True	AATAAA	-17	NA	132080944	132059233	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235_132067318_132075310_132075432_132079432_132079555_132079973_132080010_132080907
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065351	chr4	-	1703	1	FSM	ENSMUSG00000065353.3	ENSMUST00000083419.3	205	1	-1109	-389	-1109	389	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGTGATTTAATGTGT	NA	False	NA	-9	True	ATTAAA	-15	NA	132080946	132079243	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_132079200_132080900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065387	chr4	-	1068	2	FSM	ENSMUSG00000054428.13	ENSMUST00000145795.2	1014	2	-31	-23	-31	23	multi-exon	FALSE	canonical	3	7869	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTATCAGGGGGCTGGTG	9274	False	NA	NA	False	NA	NA	NA	132260937	132259775	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_132260699_132260792
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065390	chr4	+	1404	9	FSM	ENSMUSG00000054405.15	ENSMUST00000094657.10	1401	9	-2	-1	-2	1	multi-exon	TRUE	canonical	3	2684	junction_8	233.065676097962	821	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTCCTCCTCGGGTG	2329	False	NA	20	True	AATAAA	-20	NA	132262858	132281054	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065417	chr4	+	1576	9	FSM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	-20	257	-17	-257	multi-exon	FALSE	canonical	3	1317	junction_7	93.1791788706039	325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGTTTTATTTTTAGCG	NA	False	NA	38	True	GATAAA	-28	NA	132495625	132505806	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065435	chr4	-	2006	7	FSM	ENSMUSG00000028882.14	ENSMUST00000105919.2	1090	7	-14	-902	-3	4	multi-exon	FALSE	canonical	3	27	junction_1	56.674509261219	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGTCTTGAGTCTTACT	NA	False	NA	-2	True	ATTAAA	-20	NA	132570448	132554235	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_132555515_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570367
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065445	chr4	-	2118	8	NNC	ENSMUSG00000028882.14	novel	2037	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	76.5037013910478	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	False	NA	-6	True	ATTAAA	-16	NA	132570445	132554239	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570119_132570236_132570367
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065447	chr4	-	2071	8	NNC	ENSMUSG00000028882.14	novel	2037	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	77.7027302333341	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	False	NA	-6	True	ATTAAA	-16	NA	132570445	132554239	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132564450_132564520_132567954_132568016_132570367
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065469	chr4	-	3053	9	FSM	ENSMUSG00000028878.12	ENSMUST00000030696.11	3053	9	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	24.0676130931175	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTGTGATTCAGTTG	NA	False	NA	0	True	AATAAA	-19	NA	132649869	132626523	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132638002_132638090_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065481	chr4	+	195	1	Intergenic	novelGene_277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCACCTGGGCTTGTAG	NA	False	NA	NA	False	NA	NA	NA	132654044	132654239	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_132654000_132654200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065513	chr4	-	4256	17	NIC	ENSMUSG00000037622.15	novel	4191	16	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	60	junction_16	112.020575676971	378	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGGCATTTGTTGGGGC	8349	False	NA	1	True	ATTAAA	-22	NA	133080830	133019769	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_133021697_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029139_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133080096_133080261_133080600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065526	chr4	-	3818	15	NIC	ENSMUSG00000037622.15	novel	4191	16	NA	NA	-17	-7	combination_of_known_splicesites	FALSE	canonical	2	11	junction_14	131.723659412345	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTGGTGGCATTTG	8973	False	NA	-6	True	ATTAAA	-15	NA	133080206	133019776	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_133021697_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029139_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133080096
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065576	chr4	+	1915	4	NIC	ENSMUSG00000037600.17	novel	1699	4	NA	NA	-11	1	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	21.9544984001001	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACCTGCCTGGTCATCAG	5552	False	NA	7	True	NA	NA	NA	133246354	133258099	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_133246423_133255050_133256321_133257141_133257217_133257597
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065579	chr4	-	1378	8	FSM	ENSMUSG00000028851.7	ENSMUST00000030665.7	1316	8	-56	-6	-56	6	multi-exon	FALSE	canonical	3	2323	junction_4	508.87928082108	3096	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCGTCTAGACCCTCTG	4404	False	NA	NA	False	ATTAAA	-25	NA	133273363	133259846	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_133260111_133260505_133260625_133260716_133260801_133261538_133261854_133262820_133262887_133262978_133263183_133268449_133268528_133273115
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065597	chr4	+	3492	11	Fusion	ENSMUSG00000028848.14_ENSMUSG00000028850.3	novel	2004	7	NA	NA	-4	-1	multi-exon	FALSE	canonical	3	33	junction_3	55.2959311342164	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTTTTTTTAGTGTGTG	NA	False	NA	40	True	NA	NA	NA	133302051	133319045	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr4_+_133302522_133305217_133305646_133307096_133307272_133307961_133308022_133309782_133309905_133310292_133310421_133310929_133312181_133313220_133313378_133315810_133315972_133317077_133317209_133318636
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065610	chr4	+	207	1	Intergenic	novelGene_278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCTCTCCCTAAAGTGCC	NA	False	NA	NA	False	AAGAAA	-2	NA	133354749	133354956	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_133354700_133355000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065623	chr4	-	2148	3	ISM	ENSMUSG00000043257.16	ENSMUST00000062118.11	3979	4	21	3676	21	-1809	5prime_fragment	FALSE	canonical	3	69	junction_1	27.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTCAATACCATCCT	NA	False	NA	NA	False	NA	NA	NA	133399937	133391373	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_-_133393091_133397048_133397172_133399629
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065633	chr4	-	2768	3	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	68236	913	35401	20	3prime_fragment	FALSE	canonical	3	162	junction_2	10	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTGAAGGACAAAGGTGAC	4482	False	NA	NA	False	NA	NA	NA	133412686	133407231	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_-_133409367_133411745_133411877_133412184
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065671	chr4	-	3530	4	FSM	ENSMUSG00000050966.10	ENSMUST00000051674.3	3505	4	-35	10	-35	-10	multi-exon	FALSE	canonical	3	70	junction_1	2.62466929133727	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTACTGGTCTCTCTGA	8215	False	NA	-1	True	AATAAA	-20	NA	133746187	133730650	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_133733633_133735221_133735407_133745363_133745561_133746021
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065689	chr4	+	1567	15	FSM	ENSMUSG00000012126.17	ENSMUST00000074690.11	1573	15	10	-4	10	4	multi-exon	TRUE	canonical	3	35	junction_2	24.8785827078437	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCACAAGGCTCTCCAGA	NA	False	NA	19	True	AATAAA	-19	NA	133829903	133854091	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_133829960_133835562_133835667_133836401_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065731	chr4	-	4151	11	FSM	ENSMUSG00000028838.12	ENSMUST00000030643.3	4126	11	-26	1	-26	-1	multi-exon	FALSE	canonical	3	37	junction_3	6.57951365983839	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCCGGGCTATAAATACGC	6997	False	NA	-1	True	AATAAA	-22	NA	134099895	134083683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_134085142_134085288_134085458_134086395_134086557_134087059_134087147_134087842_134087933_134089611_134089719_134089893_134090027_134090393_134090514_134091891_134092000_134092208_134092300_134098268
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065738	chr4	+	3088	11	FSM	ENSMUSG00000037366.15	ENSMUST00000105869.9	2248	11	80	-920	-7	-1	multi-exon	FALSE	canonical	3	35	junction_4	4.79687398208458	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCTGGCTGGCTTTCTTC	1859	False	NA	19	True	ATTAAA	-21	NA	134123710	134154723	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_134123736_134130280_134130416_134131403_134131555_134132316_134132414_134138214_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688_134149844_134152783
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065760	chr4	-	2013	7	FSM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	0	12	0	2	multi-exon	FALSE	canonical	3	105	junction_6	159.506530691797	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGAATTTTTTTCTTGGT	NA	False	NA	-5	True	ATTAAA	-18	NA	134262579	134252872	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262392
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065761	chr4	-	1902	7	FSM	ENSMUSG00000046671.19	ENSMUST00000116279.10	1969	7	62	5	-27	2	multi-exon	FALSE	canonical	3	259	junction_6	102.782402298361	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGAATTTTTTTCTTGGT	NA	False	NA	-5	True	ATTAAA	-18	NA	134262636	134252872	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262560
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065768	chr4	-	1353	7	NNC	ENSMUSG00000046671.19	novel	2025	7	NA	NA	0	-541	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_6	178.015604809117	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAGTCTCCATAATTG	NA	False	NA	-2	True	AATGAA	-18	NA	134262569	134253415	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262499
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065774	chr4	-	2696	9	FSM	ENSMUSG00000037295.8	ENSMUST00000037828.8	6549	9	-4	3857	-4	1165	multi-exon	TRUE	canonical	3	50	junction_1	8.8175960442742	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGAGTATTGCTGGTAAC	NA	False	NA	0	True	AATAAA	-27	NA	134495339	134472721	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_134474511_134475592_134475628_134476647_134476779_134477269_134477354_134477692_134477766_134482503_134482619_134484651_134484765_134486229_134486373_134495126
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065819	chr4	+	1462	6	NIC	ENSMUSG00000037266.19	novel	2151	6	NA	NA	-1	0	intron_retention	FALSE	canonical	3	31	junction_4	383.058011272444	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134650935	134654683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_134651079_134651185_134651794_134652603_134652744_134653087_134653133_134654045_134654130_134654241
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065820	chr4	+	2171	6	FSM	ENSMUSG00000037266.19	ENSMUST00000145364.8	2151	6	-20	0	-1	0	multi-exon	FALSE	canonical	3	46	junction_4	379.006385170488	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134650935	134654683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_134651079_134651185_134651794_134652603_134652744_134653087_134653133_134653336_134654130_134654241
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065824	chr4	+	1587	7	NIC	ENSMUSG00000037266.19	novel	2151	6	NA	NA	-1	0	intron_retention	FALSE	canonical	3	46	junction_4	392.724988594648	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134650935	134654683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_134651079_134651185_134651794_134652603_134652744_134653087_134653133_134653336_134653462_134654045_134654130_134654241
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065825	chr4	+	2674	5	NIC	ENSMUSG00000037266.19	novel	2151	6	NA	NA	-1	0	intron_retention	FALSE	canonical	3	141	junction_3	314.200075588788	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTAGTTGTGAATGGTAG	NA	False	NA	9	True	NA	NA	NA	134650935	134654982	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_134651079_134651185_134651794_134652603_134652744_134653087_134654130_134654241
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065826	chr4	+	2713	4	NNC	ENSMUSG00000037266.19	novel	2151	6	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_3	394.796431369665	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134650935	134654683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_134651079_134651185_134651794_134652603_134654134_134654251
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065831	chr4	+	2127	5	NIC	ENSMUSG00000037266.19	novel	2151	6	NA	NA	-1	1	intron_retention	FALSE	canonical	3	19	junction_3	366.739945329112	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGGATGTTGAATGTG	NA	False	NA	22	True	AATAAA	-22	NA	134650935	134654684	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_134651079_134651185_134651794_134652603_134652744_134653336_134654130_134654241
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065835	chr4	+	1792	6	NIC	ENSMUSG00000037266.19	novel	2151	6	NA	NA	-1	1	intron_retention	FALSE	canonical	3	56	junction_4	376.334213166967	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGGATGTTGAATGTG	NA	False	NA	22	True	AATAAA	-22	NA	134650935	134654684	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_134651079_134651185_134651794_134652603_134652744_134653087_134653462_134654045_134654130_134654241
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065906	chr4	-	2789	16	NNC	ENSMUSG00000037188.8	novel	2789	16	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_11	58.2178285025778	91	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGTTTTCATGCGCTTCT	NA	False	NA	-1	True	AATAAA	-21	NA	135300943	135269197	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_135270085_135273553_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279056_135279191_135279310_135279390_135279846_135280006_135281823_135281919_135283113_135283226_135283397_135283552_135284154_135284229_135284478_135284825_135286413_135286476_135288479_135288667_135300718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065968	chr4	-	1634	10	FSM	ENSMUSG00000028670.15	ENSMUST00000067567.5	1626	10	0	-8	0	8	multi-exon	TRUE	canonical	3	407	junction_1	24.7476149243608	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGGTACAGCGTGGCC	NA	False	NA	-3	True	ATTAAA	-28	NA	135699937	135695526	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_135696379_135696454_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000065982	chr4	-	4679	11	FSM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	29	0	29	0	multi-exon	FALSE	canonical	3	104	junction_6	17.5182761709022	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGAGCCTTTCCTCAT	7733	False	NA	-1	True	AATAAA	-17	NA	135749045	135730678	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_135732989_135733481_135733661_135734422_135734535_135735090_135735272_135736356_135736455_135736556_135736713_135737060_135737176_135737539_135738720_135740180_135740288_135741710_135741768_135748861
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066001	chr4	+	3918	25	FSM	ENSMUSG00000036995.8	ENSMUST00000047526.8	4225	25	0	307	0	-307	multi-exon	FALSE	canonical	3	23	junction_10	6.55532014643238	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTCATCTCATTCTT	1322	False	NA	14	True	AAAACA	-26	NA	135933675	135972220	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_135933959_135954718_135954792_135954873_135955020_135955709_135955785_135956710_135956761_135960549_135960662_135960874_135960961_135961334_135961411_135961638_135961726_135961894_135962005_135963685_135963756_135964007_135964096_135965486_135965536_135965642_135965831_135965909_135966044_135966202_135966298_135966491_135966670_135967428_135967515_135967661_135967778_135968316_135968385_135968465_135968577_135968683_135968880_135969966_135970193_135970758_135970853_135971099
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066017	chr4	+	2527	10	FSM	ENSMUSG00000066037.15	ENSMUST00000131671.8	2543	10	16	0	-10	0	multi-exon	FALSE	canonical	3	289	junction_1	97.5394823509124	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATTTCAAATTCAATTGT	NA	False	NA	32	True	AATAAA	-26	NA	136038268	136067992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_136038401_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066031	chr4	+	2683	11	FSM	ENSMUSG00000066037.15	ENSMUST00000105850.8	2683	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	130.381325349914	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATTTCAAATTCAATTGT	NA	False	NA	32	True	AATAAA	-26	NA	136038278	136067992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_136038401_136041400_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066045	chr4	-	3140	20	FSM	ENSMUSG00000036940.16	ENSMUST00000105847.8	3028	20	-108	-4	-72	0	multi-exon	FALSE	canonical	3	991	junction_18	209.393504887799	333	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAATTGTGTGTGTGTG	NA	False	NA	-5	True	AATAAA	-30	NA	136330106	136277850	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_136278345_136279182_136279330_136279771_136279900_136281106_136281222_136281523_136281712_136282483_136282617_136284952_136285065_136285808_136285883_136286483_136286619_136287633_136287725_136288328_136288472_136295883_136295979_136297768_136297851_136299528_136299636_136300383_136300477_136301335_136301415_136304381_136304516_136309350_136309411_136320275_136320442_136329542
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066072	chr4	+	189	1	Intergenic	novelGene_279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCCGGGCGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	137090671	137090860	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_137090700_137090900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066086	chr4	+	5714	27	NIC	ENSMUSG00000043411.16	novel	5741	27	NA	NA	22	-1	intron_retention	FALSE	canonical	3	659	junction_9	223.123509724359	124	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTATCCGGAGTGAGT	525	False	NA	15	True	ATTAAA	-25	NA	137321472	137385840	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066095	chr4	+	3522	27	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	25	12	combination_of_known_junctions	FALSE	canonical	3	584	junction_9	231.427832630339	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGTGTTTCAGATTTTCT	528	False	NA	20	True	AATAAA	-32	NA	137321475	137383654	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066122	chr4	+	3473	27	NIC	ENSMUSG00000043411.16	novel	5741	27	NA	NA	10	12	combination_of_known_junctions	FALSE	canonical	3	237	junction_13	300.621053406908	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGTGTTTCAGATTTTCT	580	False	NA	20	True	AATAAA	-32	NA	137321527	137383654	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066141	chr4	+	3268	24	NIC	ENSMUSG00000041351.17	novel	1216	11	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	41.4733385102208	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGGAGTTAAGAACAGCTT	3342	False	NA	11	True	AATAAA	-21	NA	137392041	137457172	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_137392156_137431384_137431479_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455539_137455675_137455838_137455880_137456185
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066155	chr4	+	1939	10	ISM	ENSMUSG00000041351.17	ENSMUST00000097837.11	3168	23	12387	2	1037	-1	3prime_fragment	TRUE	canonical	3	83	junction_7	18.9326290948839	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCGGAGTTAAGAACAGC	NA	False	NA	9	True	AATAAA	-19	NA	137447219	137457170	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_+_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066188	chr4	+	2138	11	FSM	ENSMUSG00000028757.5	ENSMUST00000030538.5	2120	11	-24	6	-24	-6	multi-exon	FALSE	canonical	3	2240	junction_8	67.8427593778437	1610	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCCTATCAGTGTTCTTT	NA	False	NA	31	True	NA	NA	NA	138032016	138039933	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038300_138038720_138038842_138038950_138039058_138039144
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066234	chr4	+	486	3	Intergenic	novelGene_280	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	52	junction_1	9.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAAGAGGCTGTGGGTGT	4292	False	NA	NA	False	NA	NA	NA	138225893	138255803	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_138226002_138226562_138226737_138255599
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066277	chr4	-	1529	9	FSM	ENSMUSG00000028744.16	ENSMUST00000053862.12	1532	9	6	-3	6	3	multi-exon	FALSE	canonical	3	103	junction_8	18.155147341732	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTTTCTGCTGCTCCTT	NA	False	NA	0	True	AGTAAA	-18	NA	139038013	139025835	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139034002_139035039_139035162_139037939
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066289	chr4	-	954	8	NNC	ENSMUSG00000028741.14	novel	1221	8	NA	NA	4	3	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_6	362.89386765785	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTTTCTTTTTTTTTTT	5978	False	NA	-9	True	AATAAA	-37	NA	139079605	139074752	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_139075117_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077051_139077746_139077806_139079579
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066332	chr4	+	3757	13	FSM	ENSMUSG00000040945.14	ENSMUST00000038893.6	3767	13	10	0	10	0	multi-exon	FALSE	canonical	3	3313	junction_2	495.610285966257	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGGCTTTCATGATTCCT	2391	False	NA	28	True	AATAAA	-21	NA	140428793	140450531	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_140428962_140429457_140429747_140435261_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066377	chr4	+	965	8	FSM	ENSMUSG00000009863.15	ENSMUST00000010007.9	1142	8	177	0	-21	0	multi-exon	FALSE	canonical	3	2820	junction_2	205.868890316143	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCGTTACTCTCCATTAT	NA	False	NA	NA	False	AATAAA	-14	NA	140688690	140706504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066393	chr4	+	3931	29	FSM	ENSMUSG00000036622.16	ENSMUST00000037055.14	3956	29	24	1	-3	-1	multi-exon	FALSE	canonical	3	40	junction_19	18.6368011510253	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTCGGCACTGGTCTTG	1426	False	NA	11	True	AATAAA	-16	NA	140714207	140734640	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_140714388_140719442_140719538_140719648_140719832_140721106_140721166_140721258_140721374_140721622_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140729858_140729934_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662_140733815_140733989_140734160_140734251
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066403	chr4	+	890	6	NNC	ENSMUSG00000060572.18	novel	1073	9	NA	NA	3125	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCACGGTCACTTTTGCGT	NA	False	NA	NA	False	AATAAA	-14	NA	140741079	140743284	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_140741171_140741366_140741394_140741499_140741613_140742293_140742382_140742525_140742600_140742787
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066410	chr4	-	1881	8	FSM	ENSMUSG00000028923.15	ENSMUST00000030760.15	1906	8	25	0	10	0	multi-exon	TRUE	canonical	3	362	junction_3	45.6883855200484	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATGGATATGTTTTT	8510	False	NA	-10	True	AATAAA	-22	NA	140805643	140793822	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_140794924_140795505_140795591_140797366_140797545_140799839_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066417	chr4	-	1991	9	NIC	ENSMUSG00000028923.15	novel	1906	8	NA	NA	13	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	200.893628569947	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCAGATGGATATGTTT	8513	False	NA	-12	True	AATAAA	-20	NA	140805640	140793824	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_140794924_140795505_140795591_140797366_140797545_140798891_140799007_140799839_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066436	chr4	-	3338	5	NNC	ENSMUSG00000040842.18	novel	3244	4	NA	NA	-4	-14	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	87.0470418796641	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTGTCCTCATTTCTG	NA	False	NA	-14	True	TATAAA	-33	NA	140867081	140840325	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_140843176_140843847_140843952_140845837_140846093_140847634_140847685_140867002
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066494	chr4	+	2777	15	FSM	ENSMUSG00000006215.13	ENSMUST00000142438.8	3478	15	0	701	0	4	multi-exon	TRUE	canonical	3	129	junction_3	19.043987749097	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGTCCCTGTGTCAC	NA	False	NA	9	True	AATAAA	-19	NA	141171994	141194540	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066512	chr4	+	2666	16	NNC	ENSMUSG00000006215.13	novel	2722	16	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	42.4261973575552	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGGTCCCTGTGTCA	NA	False	NA	8	True	AATAAA	-18	NA	141172006	141194539	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_141172114_141174561_141174649_141189096_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066523	chr4	-	3064	9	FSM	ENSMUSG00000006219.13	ENSMUST00000105784.8	3036	9	-24	-4	-24	4	multi-exon	FALSE	canonical	3	1168	junction_5	205.258944689385	982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTGTTTTTGTCTGGGG	NA	False	NA	0	True	AATAAA	-18	NA	141327259	141303368	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066534	chr4	-	3064	9	NIC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_8	503.602134005606	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141327361	141303372	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327256
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066548	chr4	-	3107	9	NIC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_8	503.602134005606	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141325572	141303372	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325424
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066567	chr4	-	2085	9	NNC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	0	-926	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	521.535713062874	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTTAGCCATGTCTAATG	NA	False	NA	NA	False	NA	NA	NA	141327235	141304298	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322559_141322791_141323205_141323260_141327158
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066578	chr4	-	2540	5	FSM	ENSMUSG00000043085.15	ENSMUST00000156246.2	2478	5	-58	-4	-58	0	multi-exon	FALSE	canonical	3	69	junction_2	19.536824204563	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGTTGAGGATCACAGT	NA	False	NA	-4	True	AATAAA	-16	NA	141345350	141341543	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_141342018_141342255_141343933_141344605_141344781_141344950_141345024_141345209
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066624	chr4	-	1828	3	NNC	ENSMUSG00000040616.4	novel	1875	3	NA	NA	-376	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	75.5	29	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	9824	False	NA	-6	True	AATAAA	-18	NA	141811991	141758302	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_141759406_141764715_141765245_141811795
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066652	chr4	+	3526	4	FSM	ENSMUSG00000046862.15	ENSMUST00000037356.8	3260	4	-266	0	-251	0	multi-exon	FALSE	canonical	3	80	junction_1	39.6316371938716	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTTCACTTCCTTTG	NA	False	NA	10	True	AATAAA	-17	NA	143139290	143147661	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_143139662_143143209_143143523_143143942_143144531_143145407
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066664	chr4	+	887	2	Intergenic	novelGene_281	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCAGCTACAATCAGCTG	NA	False	NA	NA	False	NA	NA	NA	143714455	143715401	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_143715073_143715131
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066685	chr4	+	1845	1	FSM	ENSMUSG00000070610.5	ENSMUST00000118978.2	1389	1	-111	-345	-111	345	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGGCCAATTGGTTATC	NA	False	NA	NA	False	NA	NA	NA	144313702	144315547	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_144313700_144315500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066694	chr4	-	3816	10	FSM	ENSMUSG00000028599.11	ENSMUST00000030336.11	3818	10	0	2	0	-2	multi-exon	FALSE	canonical	3	41	junction_7	11.2546286774228	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTTGCTTATCTGTTTG	7832	False	NA	NA	False	AATAAA	-36	NA	144973440	144940034	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_144942671_144946298_144946507_144949523_144949559_144950072_144950151_144950821_144951055_144951381_144951476_144951899_144952053_144954037_144954167_144955573_144955677_144973293
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066745	chr4	+	897	6	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43720	-2021	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	99.0898582096069	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145508086	145554491	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_145508425_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066754	chr4	+	2855	4	FSM	ENSMUSG00000066009.9	ENSMUST00000091878.6	2798	4	-54	-3	-7	3	multi-exon	FALSE	canonical	3	78	junction_2	56.5115524079418	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033860	146063194	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066807	chr4	+	913	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33246	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	287.112800132631	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500233	146550672	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_146500588_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066849	chr4	+	1599	2	Genic_Genomic	ENSMUSG00000093919.2	novel	648	1	NA	NA	-281	2390	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGGATATGGCTTCTCCT	3731	False	NA	NA	False	AATAAA	-37	NA	147016917	147020236	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr4_+_147017395_147019114
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066874	chr4	+	559	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	-840	at_least_one_novel_splicesite	FALSE	canonical	3	110	junction_1	92.8906166771793	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	NA	False	NA	17	True	NA	NA	NA	147576867	147597037	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066891	chr4	-	2593	5	FSM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	-33	-2	-28	0	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726998	147696393	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066907	chr4	-	507	3	NIC	ENSMUSG00000078495.11	novel	2405	4	NA	NA	-11	-1735	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	9	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAACCGAAATGCAGAATT	8362	False	NA	NA	False	AAGAAA	-4	NA	147860301	147840390	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_147840693_147845677_147845736_147860154
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000066969	chr4	-	5209	23	FSM	ENSMUSG00000029016.14	ENSMUST00000030879.12	3306	23	-28	-1875	-20	0	multi-exon	FALSE	canonical	3	89	junction_12	12.7042811811837	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTTGTCTCCACGGTGCT	7394	False	NA	-1	True	AATAAA	-22	NA	148123298	148088715	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095268_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957_148099085_148101308_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108673_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067044	chr4	-	1667	6	FSM	ENSMUSG00000029001.16	ENSMUST00000057907.10	1829	6	164	-2	-42	-1	multi-exon	FALSE	canonical	3	37	junction_4	3.00665927567458	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCCCTGCGGCTTTTG	NA	False	NA	-4	True	AATAAA	-15	NA	148244376	148237257	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067049	chr4	+	1316	6	FSM	ENSMUSG00000041556.9	ENSMUST00000047951.9	1288	6	-35	7	-35	-7	multi-exon	FALSE	canonical	3	50	junction_2	6.34350061086148	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATGGACGCACAGATGAAT	NA	False	NA	16	True	NA	NA	NA	148245042	148250874	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_148245169_148248531_148248913_148249282_148249413_148249484_148249581_148250100_148250231_148250421
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067060	chr4	-	2455	3	NNC	ENSMUSG00000047719.3	novel	576	3	NA	NA	10	-2	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	31.5	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCAGTGGCTTTGTTTC	NA	False	NA	-2	True	ATTAAA	-14	NA	148529208	148518953	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_148521100_148528384_148528587_148529101
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067073	chr4	+	2803	25	FSM	ENSMUSG00000017264.17	ENSMUST00000017408.14	2790	25	-13	0	-13	0	multi-exon	TRUE	canonical	3	466	junction_4	49.4747234847138	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	148642872	148666858	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067084	chr4	+	2774	25	NNC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	126.255686065574	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	148642898	148666858	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_148643036_148644004_148644142_148645469_148645591_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067089	chr4	+	2692	24	FSM	ENSMUSG00000017264.17	ENSMUST00000076022.7	2682	24	-10	0	-3	0	multi-exon	FALSE	canonical	3	22	junction_18	124.035058157659	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	148642908	148666858	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067128	chr4	-	1217	8	FSM	ENSMUSG00000041459.16	ENSMUST00000045180.14	2006	8	-5	794	0	3	multi-exon	FALSE	canonical	3	205	junction_2	361.175800938647	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATTCATCACCTGTCATG	NA	False	NA	1	True	AATAAA	-29	NA	148711227	148701169	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_148701302_148702022_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067138	chr4	-	2169	7	NIC	ENSMUSG00000041459.16	novel	1304	8	NA	NA	1	2	intron_retention	FALSE	canonical	3	409	junction_1	257.510949066033	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAATGGATTCATCACCT	NA	False	NA	-5	True	AATAAA	-23	NA	148711226	148701175	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_148701302_148702022_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067149	chr4	-	2748	6	FSM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	248	4481	-1	0	multi-exon	FALSE	canonical	3	1029	junction_2	35.1146692993114	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711228	148701319	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067195	chr4	+	202	1	Intergenic	novelGene_282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCATGCCACCACACCTGG	NA	False	NA	NA	False	NA	NA	NA	149378363	149378565	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_149378400_149378600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067208	chr4	-	1039	2	FSM	ENSMUSG00000028960.21	ENSMUST00000173005.2	621	2	-413	-5	2	5	multi-exon	FALSE	canonical	3	264	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTGCTTCTGTCTGTTC	NA	False	NA	NA	False	ATTAAA	-35	NA	149511086	149482951	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_149483243_149510338
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067210	chr4	+	606	1	FSM	ENSMUSG00000070572.8	ENSMUST00000117987.2	378	1	-39	-189	-39	189	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGTAGCTACTTCCTAA	1875	False	NA	NA	False	ATTAAA	-35	NA	149541746	149542352	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_149541700_149542400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067220	chr4	+	1300	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	61.9861735735133	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569679	149581125	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_149569731_149570318_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067227	chr4	+	1582	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	24	0	intron_retention	FALSE	canonical	3	32	junction_1	58.2405287035881	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569720	149581125	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_149570050_149570314_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067248	chr4	-	3699	11	NNC	ENSMUSG00000044700.16	novel	3697	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	101.776225121587	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTGTGTTTTCTTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	149822501	149799831	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_-_149801535_149802476_149802615_149803107_149803402_149803968_149804041_149806663_149806897_149811683_149811888_149812356_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067251	chr4	-	3697	11	FSM	ENSMUSG00000044700.16	ENSMUST00000105687.9	3697	11	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	67.7469556511582	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTGTGTTTTCTTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	149822501	149799831	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_149801535_149802476_149802615_149803107_149803402_149803968_149804041_149806663_149806897_149811683_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067275	chr4	-	1912	7	FSM	ENSMUSG00000028982.10	ENSMUST00000105686.3	1887	7	-20	-5	-20	5	multi-exon	FALSE	canonical	3	394	junction_5	32.4623713791146	432	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCCTGCATTTATCCT	NA	False	NA	NA	False	AATAAA	-25	NA	149858754	149828487	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_149829395_149833505_149833787_149836860_149836928_149838255_149838357_149840531_149840610_149846823_149847004_149858456
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067280	chr4	-	3092	3	FSM	ENSMUSG00000039911.14	ENSMUST00000038562.9	3092	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	6.5	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCGAGTCCTTTCGTGC	NA	False	NA	3	True	AATAAA	-24	NA	150039500	149980739	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_149982799_149990872_149991715_150039309
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067306	chr4	+	1892	3	FSM	ENSMUSG00000063524.14	ENSMUST00000130632.8	1878	3	0	-14	0	14	multi-exon	FALSE	canonical	3	15633	junction_2	329.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTGAGGCTGGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	150321696	150327198	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_150321798_150323929_150324024_150325501
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067318	chr4	+	2697	1	NIC	ENSMUSG00000063524.14	novel	519	6	NA	NA	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCCCAACCTGTGCTA	NA	False	NA	NA	False	NA	NA	NA	150321696	150324393	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_150321700_150324400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067322	chr4	+	198	1	Intergenic	novelGene_283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAATTAGGGGTGTGGGAT	5033	False	NA	NA	False	NA	NA	NA	150578548	150578746	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_150578500_150578700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067327	chr4	+	3048	4	FSM	ENSMUSG00000028967.11	ENSMUST00000030811.2	3043	4	-3	-2	-3	2	multi-exon	FALSE	canonical	3	303	junction_2	19.3275853524323	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTGTCTTGTCTAAACT	3778	False	NA	NA	False	AATAAA	-30	NA	150939526	150953346	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_150939729_150949531_150949727_150949820_150949898_150950772
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067352	chr4	-	2143	5	FSM	ENSMUSG00000028955.4	ENSMUST00000030797.4	2120	5	-27	4	-17	-4	multi-exon	FALSE	canonical	3	150	junction_4	30.2685893295343	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGTCGTGTTTCTTGG	NA	False	NA	-1	True	AATAAA	-18	NA	151142437	151131760	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142330
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067360	chr4	-	631	4	FSM	ENSMUSG00000014592.22	ENSMUST00000185034.8	2198	4	-69	1636	-27	20	multi-exon	FALSE	canonical	3	969	junction_2	33.2565782966318	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGTTTAATGAGTACAT	NA	False	NA	-3	True	AATAAA	-30	NA	151946230	151876666	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_151876960_151914874_151914994_151920270_151920341_151946081
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067393	chr4	-	1013	3	FSM	ENSMUSG00000039759.11	ENSMUST00000105665.3	832	3	-19	-162	8	-1	multi-exon	FALSE	canonical	3	60	junction_1	59.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGGCTGTCACTCGGT	NA	False	NA	-4	True	AATAAA	-15	NA	152073446	152067096	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_152067810_152070125_152070319_152073339
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067410	chr4	+	3784	5	NNC	ENSMUSG00000073700.4	novel	3986	4	NA	NA	109	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	45.4175076374739	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTGGGTGTCATGGCCT	6507	False	NA	11	True	AATAAA	-11	NA	152093368	152102135	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_152094421_152096756_152097163_152098763_152098837_152099791_152101389_152101479
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067429	chr4	-	1204	2	ISM	ENSMUSG00000028950.4	ENSMUST00000030792.2	2863	6	7664	1	7664	-1	3prime_fragment	FALSE	canonical	3	9	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGGCTTCTTGGCT	5436	False	NA	-1	True	AATAAA	-13	NA	152115361	152112371	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_-_152113455_152115240
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067450	chr4	+	3844	22	FSM	ENSMUSG00000039713.18	ENSMUST00000118648.8	3818	22	-18	-8	-18	-2	multi-exon	FALSE	canonical	3	104	junction_1	15.0256017344728	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCATGCGCTTCTGGAAC	NA	False	NA	36	True	TATAAA	-25	NA	152171296	152199855	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_152171403_152172101_152172179_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191459_152191914_152191966_152192168_152192319_152192432_152192544_152192637_152192788_152192859_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254_152199026_152199286
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067490	chr4	+	4871	5	FSM	ENSMUSG00000039662.17	ENSMUST00000048892.14	4919	5	53	-5	-24	5	multi-exon	FALSE	canonical	3	97	junction_2	16.0370664399696	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCCTGTATCAGGTGTC	4588	False	NA	8	True	AATAAA	-23	NA	152381736	152391583	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_152382026_152383141_152383231_152384127_152384298_152384993_152385212_152387478
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067555	chr4	+	479	1	ISM	ENSMUSG00000029028.15	ENSMUST00000169622.8	3468	7	9304	0	1396	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGCATCAGCAGCCTTA	NA	False	NA	16	True	AATAAA	-18	NA	154105491	154105970	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_+_154105500_154106000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067561	chr4	+	1606	12	FSM	ENSMUSG00000029029.15	ENSMUST00000030895.12	1598	12	-3	-5	-3	5	multi-exon	FALSE	canonical	3	51	junction_4	6.78354840224641	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGGTGGTTGTTTTCTTC	NA	False	NA	30	True	TATAAA	-35	NA	154226825	154241278	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_154226971_154229699_154229853_154230947_154231065_154233166_154233240_154236084_154236189_154236794_154236882_154237017_154237153_154237249_154237328_154238991_154239098_154239697_154239824_154240557_154240750_154240988
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067569	chr4	-	319	1	ISM	ENSMUSG00000029030.15	ENSMUST00000030896.15	1724	4	2863	0	2363	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTGCTCCTTTTTGAA	NA	False	NA	-3	True	AGTAAA	-16	NA	154242260	154241941	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_-_154241900_154242300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067573	chr4	-	1788	4	NIC	ENSMUSG00000029030.15	novel	1724	4	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	329.056226198502	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTGCTCCTTTTTGAA	NA	False	NA	-3	True	AGTAAA	-16	NA	154245143	154241941	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_154243023_154243725_154243880_154244497_154244719_154244811
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067601	chr4	+	2562	19	FSM	ENSMUSG00000029056.14	ENSMUST00000030931.11	2508	19	10	-64	0	1	multi-exon	FALSE	canonical	3	88	junction_8	27.1993100856585	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCTGGTGAGAAGCAGTG	NA	False	NA	NA	False	NA	NA	NA	155048589	155065392	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155056688_155056925_155057027_155059086_155059243_155060718_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063377_155063483_155063948_155064050_155064182_155064252_155064951
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067629	chr4	+	1069	4	FSM	ENSMUSG00000073684.14	ENSMUST00000178473.8	1076	4	7	0	7	0	multi-exon	FALSE	canonical	3	113	junction_1	46.5784881201135	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTTCCTTCATAGCAA	NA	False	NA	8	True	NA	NA	NA	155334429	155341144	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_155334520_155334962_155335108_155335212_155335494_155340591
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067656	chr4	+	3145	11	FSM	ENSMUSG00000029064.16	ENSMUST00000105616.10	3088	11	-57	0	-54	0	multi-exon	FALSE	canonical	3	1867	junction_1	609.593339858631	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTGTGATGGTTATTT	NA	False	NA	27	True	AATAAA	-19	NA	155575763	155643726	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_155576038_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067663	chr4	+	3170	12	FSM	ENSMUSG00000029064.16	ENSMUST00000030940.14	3131	12	-39	0	-30	0	multi-exon	FALSE	canonical	3	1763	junction_1	785.626496329864	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTGTGATGGTTATTT	NA	False	NA	27	True	AATAAA	-19	NA	155575787	155643726	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_155576038_155600087_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067668	chr4	+	3163	12	FSM	ENSMUSG00000029064.16	ENSMUST00000165335.8	3143	12	-20	0	-20	0	multi-exon	FALSE	canonical	3	731	junction_11	1088.68406424249	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTGTGATGGTTATTT	NA	False	NA	27	True	AATAAA	-19	NA	155575797	155643726	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_155576038_155600087_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641924
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067676	chr4	+	3096	11	NIC	ENSMUSG00000029064.16	novel	3143	12	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	731	junction_10	1033.79389145032	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTGTGATGGTTATTT	NA	False	NA	27	True	AATAAA	-19	NA	155575815	155643726	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_155576038_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641924
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067694	chr4	+	3047	12	FSM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	105	0	-21	0	multi-exon	FALSE	canonical	3	675	junction_7	32.1412173266612	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAGTAACAGCTTTCTTC	9677	False	NA	38	True	AATAAA	-24	NA	155648261	155675458	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067705	chr4	+	3037	12	NNC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	209.5651144396	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTTAAGTAACAGCTTT	9687	False	NA	34	True	AATAAA	-20	NA	155648271	155675454	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671958_155672141_155672242_155672317_155672476_155673066_155673150_155673784
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067777	chr4	-	2425	16	FSM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	-11	-1	-11	1	multi-exon	FALSE	canonical	3	684	junction_5	53.203759265676	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTTGATGGCTGAGGT	NA	False	NA	-8	True	AATAAA	-20	NA	155845561	155825096	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067792	chr4	+	2274	11	FSM	ENSMUSG00000029068.17	ENSMUST00000030944.11	2442	11	-18	186	-18	54	multi-exon	FALSE	canonical	3	294	junction_8	247.410205933385	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGTGGGCTGTCATTC	4607	False	NA	22	True	AATAAA	-27	NA	155896927	155908814	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155904785_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067798	chr4	+	1342	4	FSM	ENSMUSG00000029068.17	ENSMUST00000136370.2	833	4	-277	-232	0	232	multi-exon	FALSE	canonical	3	885	junction_3	91.4123745573991	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGTTTTTAAGCCTAC	4637	False	NA	NA	False	NA	NA	NA	155896957	155900547	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067805	chr4	+	4034	11	FSM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	0	186	0	54	multi-exon	FALSE	canonical	3	294	junction_8	224.905068862398	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGTGGGCTGTCATTC	4637	False	NA	22	True	AATAAA	-27	NA	155896957	155908814	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067832	chr4	+	1767	7	ISM	ENSMUSG00000029070.10	ENSMUST00000030947.4	2203	10	1673	-7	-905	7	3prime_fragment	FALSE	canonical	3	23	junction_2	4.10960933531265	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGACCTGCTGCTCTCC	NA	False	NA	19	True	AATAAA	-20	NA	155925855	155928552	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr4_+_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067836	chr4	-	2145	3	FSM	ENSMUSG00000029073.10	ENSMUST00000030950.8	2662	3	-12	529	-12	44	multi-exon	FALSE	canonical	3	76	junction_1	2.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGTCAGGTGCCTAA	NA	False	NA	1	True	AATAAA	-42	NA	155953909	155949708	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_-_155951343_155951569_155951795_155953623
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067841	chr4	-	2317	2	NIC	ENSMUSG00000029073.10	novel	2662	3	NA	NA	14	15	intron_retention	FALSE	canonical	3	81	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGGGTATAGCATTCTGG	NA	False	NA	-28	True	AATAAA	-13	NA	155953883	155949737	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_155951795_155953623
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067857	chr4	+	2119	17	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-2	136	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	240.368199006753	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTTATTCCTACTCTC	9979	False	NA	32	True	AATAAA	-20	NA	155954021	155973326	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969658_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067888	chr4	-	1992	7	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	5	5	intron_retention	FALSE	canonical	3	293	junction_5	37.4985184892535	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGTTTATTACTTTAGC	9111	False	NA	NA	False	AATAAA	-19	NA	155976207	155973313	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_155973626_155973890_155974054_155974125_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067889	chr4	-	2026	6	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	14	5	intron_retention	FALSE	canonical	3	293	junction_4	40.5679676592259	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGTTTATTACTTTAGC	9149	False	NA	NA	False	AATAAA	-19	NA	155976169	155973313	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_-_155973626_155973890_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067921	chr4	+	1282	7	NNC	ENSMUSG00000023286.17	novel	1309	7	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_4	406.426602639804	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGTGTGTGTTCTTAG	767	False	NA	37	True	TATAAA	-19	NA	156028297	156042171	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_156028471_156033463_156033595_156035928_156035970_156039690_156039794_156039898_156040018_156040824_156040906_156041537
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067929	chr4	+	1430	7	NNC	ENSMUSG00000023286.17	novel	3339	7	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_5	433.720884389437	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGTGTGTGTTCTTAG	781	False	NA	37	True	TATAAA	-19	NA	156028311	156042171	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_156028608_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040023_156040824_156040906_156041537
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067954	chr4	+	1472	7	NNC	ENSMUSG00000029076.15	novel	5177	7	NA	NA	2800	171	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	273.376825808057	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCCCACAGCCCTGGAG	NA	False	NA	NA	False	GATAAA	-27	NA	156080633	156094946	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230_156094492_156094663
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067970	chr4	+	2966	9	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	-3	0	intron_retention	FALSE	canonical	3	85	junction_1	49.4621067080649	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8289	False	NA	22	True	NA	NA	NA	156194472	156211722	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000067998	chr4	+	2784	19	FSM	ENSMUSG00000095567.9	ENSMUST00000179543.8	2785	19	-17	18	-17	-5	multi-exon	TRUE	canonical	0	0	junction_6	452.638591421947	914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTATGTTTTCCTTTTAA	NA	False	NA	8	True	NA	NA	NA	156320449	156332055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr4_+_156320528_156320611_156320783_156321799_156321975_156322056_156322186_156323638_156323760_156323846_156323938_156324550_156324627_156324713_156324825_156325056_156325171_156325769_156325959_156326117_156326258_156327022_156327135_156327966_156328081_156328496_156328599_156329623_156329768_156329886_156330001_156330287_156330424_156331133_156331221_156331475
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068007	chr4	+	2668	19	NNC	ENSMUSG00000095567.9	novel	2785	19	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	587.725572665876	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTATGTTTTCCTTTTAA	NA	False	NA	8	True	NA	NA	NA	156320460	156332055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_156320528_156320611_156320783_156321799_156321975_156322056_156322186_156323638_156323760_156323846_156323938_156324550_156324627_156324713_156324825_156325056_156325176_156325879_156325959_156326117_156326258_156327022_156327135_156327966_156328081_156328496_156328599_156329623_156329768_156329886_156330001_156330287_156330424_156331133_156331221_156331475
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068016	chr4	+	2488	19	NNC	ENSMUSG00000095567.9	novel	2785	19	NA	NA	-6	-180	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	574.293597215282	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTTGTTTGTTTTTT	NA	False	NA	25	True	GATAAA	-20	NA	156320460	156331880	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr4_+_156320528_156320611_156320783_156321799_156321975_156322056_156322186_156323638_156323760_156323846_156323938_156324550_156324627_156324713_156324825_156325056_156325171_156325879_156325959_156326117_156326258_156327022_156327135_156327966_156328081_156328496_156328599_156329623_156329768_156329886_156330001_156330287_156330424_156331133_156331221_156331475
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068101	chr4	+	1958	7	Intergenic	novelGene_284	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	81	junction_5	9.7581874455363	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTAGGGTCATTTTTG	NA	False	NA	NA	False	NA	NA	NA	156390347	156410435	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr4_+_156390627_156404917_156405026_156405277_156405347_156405588_156405691_156408356_156408565_156408842_156409051_156409451
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068118	chr5	+	558	1	FSM	ENSMUSG00000062353.7	ENSMUST00000118533.2	438	1	-44	-76	-44	76	mono-exon	FALSE	NA	NA	NA	NA	NA	394	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTTATTATTAAGAG	NA	False	NA	NA	False	NA	NA	NA	3286386	3286944	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_3286400_3286900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068168	chr5	-	1345	2	FSM	ENSMUSG00000040429.7	ENSMUST00000044746.5	1376	2	19	12	-7	-9	multi-exon	FALSE	canonical	3	112	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAAGATTACATTTATT	NA	False	NA	NA	False	AATAAA	-11	NA	3943914	3940592	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_3941898_3943874
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068189	chr5	-	3636	4	FSM	ENSMUSG00000046798.15	ENSMUST00000060947.14	3597	4	-39	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	5.18544972870135	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCTCTGTCCTTTTCT	NA	False	NA	-3	True	ATTAAA	-17	NA	5564912	5555108	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_5558455_5561070_5561123_5563161_5563252_5564764
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068210	chr5	-	2090	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-81	-68	-81	68	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTTAAATTGGCACCAAA	NA	False	NA	-12	True	AATAAA	-2	NA	5833636	5831546	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_5831500_5833600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068213	chr5	-	2681	1	Intergenic	novelGene_285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAGGAAAGGAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	7485441	7482760	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_-_7482800_7485400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068238	chr5	+	3078	14	ISM	ENSMUSG00000040584.9	ENSMUST00000047753.5	4997	28	53107	57	-6635	-52	3prime_fragment	FALSE	canonical	3	48	junction_7	59.5291187263121	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCCATAATTGTAAATAAG	NA	False	NA	NA	False	AATAAA	-21	NA	8763183	8798518	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_8763349_8764886_8765064_8765741_8765889_8768978_8769087_8769990_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068242	chr5	+	2463	6	ISM	ENSMUSG00000040584.9	ENSMUST00000126846.2	2705	10	13331	52	-138	-52	3prime_fragment	FALSE	canonical	3	112	junction_1	56.9582303095874	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCCATAATTGTAAATAAG	NA	False	NA	NA	False	AATAAA	-21	NA	8783149	8798518	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068268	chr5	+	523	1	FSM	ENSMUSG00000078183.4	ENSMUST00000120584.2	195	1	-33	-295	-33	295	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCGAGTGAAGAGAGCTGAA	NA	False	NA	NA	False	NA	NA	NA	9021914	9022437	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_9021900_9022400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068276	chr5	-	3504	17	FSM	ENSMUSG00000042508.17	ENSMUST00000095017.11	3498	17	-2	-4	1	0	multi-exon	FALSE	canonical	3	112	junction_5	37.579706957346	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTGAGCCATGCAATTA	NA	False	NA	-1	True	AATAAA	-24	NA	9211751	9168867	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068289	chr5	-	3262	8	NNC	ENSMUSG00000057614.7	novel	3135	8	NA	NA	-119	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	54.9151479046333	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATTGACTGAATTTATTT	NA	False	NA	-3	True	AATAAA	-25	NA	18565472	18470128	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_18472208_18476823_18476978_18478439_18478574_18494521_18494651_18496460_18496619_18513550_18513693_18513780_18513824_18565049
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068318	chr5	+	2102	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	124	-5	-14	5	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAATTTGTTTTATTTGTG	NA	False	NA	11	True	AGTAAA	-31	NA	21851000	21867697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068328	chr5	+	1610	13	FSM	ENSMUSG00000029017.14	ENSMUST00000030882.12	1615	13	5	0	5	0	multi-exon	TRUE	canonical	3	306	junction_5	33.8430815184827	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTAGTCTGTTATATGT	NA	False	NA	16	True	AATAAA	-18	NA	21942143	21962150	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_21942275_21943866_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068341	chr5	+	1479	12	ISM	ENSMUSG00000028932.9	ENSMUST00000030769.7	1785	13	1438	0	1438	0	3prime_fragment	FALSE	canonical	3	1482	junction_9	138.585355743117	584	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGCTTCCAGATCTCTG	NA	False	NA	21	True	AATAAA	-17	NA	21991718	22008785	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068347	chr5	-	2114	14	FSM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	-6	-5	-6	1	multi-exon	TRUE	canonical	3	527	junction_10	41.6678895284064	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTCTTTGGTTCTGA	NA	False	NA	-2	True	AATAAA	-19	NA	22755379	22691481	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068352	chr5	-	1995	14	NIC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	17	-1	combination_of_known_junctions	FALSE	canonical	3	46	junction_12	150.475380832502	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTGTGTTCTTTGGTTCT	NA	False	NA	-4	True	AATAAA	-17	NA	22755356	22691483	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751503_22752921_22753015_22755189
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068363	chr5	-	655	1	FSM	ENSMUSG00000081855.5	ENSMUST00000121001.2	555	1	-72	-28	-72	28	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAGGTCAAAACAAAACA	NA	False	NA	NA	False	AATAAA	-28	NA	22818252	22817597	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_22817600_22818300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068384	chr5	-	3407	16	FSM	ENSMUSG00000057541.15	ENSMUST00000119946.8	3407	16	0	0	0	0	multi-exon	TRUE	canonical	3	301	junction_13	29.1369181623589	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCATGTAAAAATCTTGTC	NA	False	NA	-8	True	AATAAA	-24	NA	23988709	23945645	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_23946975_23947341_23947434_23948414_23948545_23951423_23951526_23952791_23952919_23953680_23953842_23954802_23954865_23957259_23957386_23959455_23959585_23965219_23965298_23967360_23967473_23973765_23973911_23980666_23980769_23980881_23980967_23983070_23983498_23988509
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068411	chr5	+	2879	7	FSM	ENSMUSG00000048439.16	ENSMUST00000049887.13	2914	7	35	0	-2	0	multi-exon	TRUE	canonical	3	52	junction_5	7.43116560320265	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTGTCTGTTATCTACC	5181	False	NA	NA	False	NA	NA	NA	24369995	24389011	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_24370202_24372340_24372564_24374293_24374389_24380451_24380529_24382997_24383085_24386078_24386164_24386905
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068423	chr5	+	2717	16	NNC	ENSMUSG00000028973.19	novel	2939	16	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	49.5578674099504	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGAGGCTGTAGCTTAGTA	NA	False	NA	31	True	AATAAA	-21	NA	24599380	24614945	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_24599582_24604910_24605221_24605522_24605679_24605754_24605850_24605972_24606083_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611493_24611665_24611800_24612305_24612454_24613565_24613817_24614351
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068424	chr5	+	2714	16	FSM	ENSMUSG00000028973.19	ENSMUST00000073076.12	2939	16	228	-3	-13	1	multi-exon	FALSE	canonical	3	156	junction_4	17.0567679626984	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAGGCTGTAGCTTAGTAG	NA	False	NA	32	True	AATAAA	-22	NA	24599380	24614946	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_24599582_24604910_24605221_24605522_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611493_24611665_24611800_24612305_24612454_24613565_24613817_24614351
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068445	chr5	-	1181	12	NNC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-62	192	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	52.4982486917657	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGATATGGTGGTGGG	NA	False	NA	-8	True	CATAAA	-19	NA	24628590	24624181	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_24624461_24624597_24624679_24624780_24624834_24625245_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068460	chr5	-	1878	10	FSM	ENSMUSG00000028959.15	ENSMUST00000030800.13	1893	10	16	-1	16	1	multi-exon	FALSE	canonical	3	1073	junction_9	118.54686003725	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAGTCTTGTTTCTGGGA	NA	False	NA	-3	True	NA	NA	NA	24650269	24646035	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068475	chr5	-	1809	10	NIC	ENSMUSG00000028959.15	novel	1893	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_5	369.485762100601	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	-4	True	NA	NA	NA	24650184	24646036	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647099_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068481	chr5	-	2635	9	FSM	ENSMUSG00000028959.15	ENSMUST00000149085.8	2552	9	-82	-1	18	0	multi-exon	FALSE	canonical	3	1095	junction_1	118.721049102508	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	-4	True	NA	NA	NA	24650267	24646036	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068495	chr5	-	2626	8	ISM	ENSMUSG00000028959.15	ENSMUST00000115043.8	3056	10	8	2599	0	0	intron_retention	FALSE	canonical	3	1099	junction_6	120.005271993036	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	-4	True	NA	NA	NA	24650184	24646036	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_-_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068578	chr5	+	3728	4	FSM	ENSMUSG00000038181.17	ENSMUST00000121863.5	3715	4	-10	-3	-1	3	multi-exon	FALSE	canonical	3	23	junction_2	9.8770215933527	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTTTAGGTCTAGGGAG	NA	False	NA	6	True	ATTAAA	-17	NA	24791737	24797485	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_24793299_24794094_24794660_24795306_24795490_24796066
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068634	chr5	+	2592	12	FSM	ENSMUSG00000038072.15	ENSMUST00000045737.14	2552	12	-40	0	-40	0	multi-exon	FALSE	canonical	3	184	junction_8	26.0711042984152	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGACTCTTCTATCTCT	NA	False	NA	13	True	AATAAA	-27	NA	25427839	25470916	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_25428030_25452451_25452785_25453833_25453958_25455084_25455252_25457021_25457148_25459904_25460155_25462390_25462509_25463809_25463963_25466932_25467152_25468377_25468483_25469959_25470098_25470247
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068648	chr5	+	2128	12	FSM	ENSMUSG00000056367.15	ENSMUST00000088244.6	1712	12	-67	-349	-38	3	multi-exon	TRUE	canonical	3	90	junction_4	20.0016528242663	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTCCTTGTGGTCTCTTT	NA	False	NA	13	True	AATAAA	-21	NA	25964956	26055689	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068662	chr5	+	2707	5	FSM	ENSMUSG00000045294.12	ENSMUST00000059155.11	2697	5	-8	-2	-8	2	multi-exon	FALSE	canonical	3	1125	junction_2	41.7215471908701	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTATTCCTGAGGTTTT	NA	False	NA	16	True	ATTAAA	-15	NA	28276352	28283662	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_28276794_28278544_28278670_28279479_28279647_28280059_28280160_28281788
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068668	chr5	+	3110	4	NIC	ENSMUSG00000045294.12	novel	2697	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	1125	junction_2	45.6143252352445	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTATTCCTGAGGTT	NA	False	NA	14	True	ATTAAA	-13	NA	28276360	28283660	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_28276794_28278544_28278670_28279479_28280160_28281788
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068672	chr5	+	2651	5	NNC	ENSMUSG00000045294.12	novel	2697	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	513.38508938223	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTATTCCTGAGGTT	NA	False	NA	14	True	ATTAAA	-13	NA	28276360	28283660	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_28276794_28278544_28278670_28279525_28279647_28280059_28280160_28281788
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068679	chr5	-	3515	3	FSM	ENSMUSG00000044681.20	ENSMUST00000118882.2	1984	3	90	-1621	90	-9	multi-exon	FALSE	canonical	3	175	junction_1	2	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGTAAGAGACCAGTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	28414930	28405825	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_28408435_28412284_28412382_28414121
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068699	chr5	+	2975	11	FSM	ENSMUSG00000001569.11	ENSMUST00000001611.11	9219	11	28	6216	28	5272	multi-exon	FALSE	canonical	3	157	junction_8	15.8962259671911	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCTAATGCCTTAAGAAAG	2987	False	NA	NA	False	NA	NA	NA	29639689	29656625	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_29640642_29640927_29641056_29642594_29642791_29644823_29645148_29646328_29646440_29647491_29647660_29648347_29648470_29651236_29651370_29651811_29651944_29654579_29654690_29656026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068721	chr5	+	2620	10	FSM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	281	17	-20	-17	multi-exon	FALSE	canonical	3	618	junction_9	548.115559591832	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTTTATACATTTATT	4575	False	NA	16	True	AATAAA	-27	NA	29940966	29991459	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068787	chr5	+	1375	5	FSM	ENSMUSG00000029177.10	ENSMUST00000144742.6	1466	5	88	3	-32	-3	multi-exon	FALSE	canonical	3	1270	junction_1	201.219407612685	458	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTGAAGTAAAGTTACTG	9154	False	NA	NA	False	AATGAA	-2	NA	30824208	30832171	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068815	chr5	+	2637	16	FSM	ENSMUSG00000038828.14	ENSMUST00000114716.4	2220	16	2	-419	0	0	multi-exon	TRUE	canonical	2	5	junction_3	100.591230013136	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGCTTTCCTGTCTGA	NA	False	NA	14	True	AATAAA	-14	NA	31026976	31034807	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_31027163_31027932_31028133_31028763_31028915_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068818	chr5	+	2922	16	NIC	ENSMUSG00000038828.14	novel	6110	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	358	junction_2	22.4453905191145	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGCTTTCCTGTCTGA	NA	False	NA	14	True	AATAAA	-14	NA	31026976	31034807	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_31027163_31027932_31028133_31028763_31029200_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068855	chr5	-	2338	8	NIC	ENSMUSG00000045302.14	novel	6300	9	NA	NA	-22	1	intron_retention	TRUE	canonical	3	234	junction_6	22.518926280272	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGCAGTCCTCTTGTCA	NA	False	NA	-7	True	AATAAA	-22	NA	31117646	31112385	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116757_31117314
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068858	chr5	-	2068	9	FSM	ENSMUSG00000045302.14	ENSMUST00000074840.12	6300	9	43	4189	-38	1	multi-exon	FALSE	canonical	3	205	junction_7	28.1735691739616	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGCAGTCCTCTTGTCA	NA	False	NA	-7	True	AATAAA	-22	NA	31117662	31112385	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068912	chr5	-	3790	19	FSM	ENSMUSG00000106864.4	ENSMUST00000088010.12	4552	19	0	762	0	-246	multi-exon	FALSE	canonical	3	356	junction_18	84.1706086352278	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTCTTTATATCAAGTCA	NA	False	NA	NA	False	AGTAAA	-17	NA	31337488	31314110	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068933	chr5	-	1989	12	FSM	ENSMUSG00000029145.13	ENSMUST00000114603.8	1966	12	-22	-1	-22	0	multi-exon	FALSE	canonical	3	556	junction_3	55.8517814183514	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATGACTCTGCTGCCT	NA	False	NA	-9	True	AATAAA	-15	NA	31350380	31344910	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068944	chr5	+	2053	15	FSM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	-34	-1	-34	1	multi-exon	TRUE	canonical	3	351	junction_8	24.4791664857432	739	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTTCCCTCTCACTGC	NA	False	NA	22	True	ATTAAA	-22	NA	31350536	31356245	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068968	chr5	-	2278	10	FSM	ENSMUSG00000029147.12	ENSMUST00000031032.11	2307	10	34	-5	34	1	multi-exon	FALSE	canonical	3	595	junction_8	38.6382398699386	1105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATAGTGTCCTGCTTTAC	NA	False	NA	0	True	ACTAAA	-23	NA	31377997	31360006	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_31360629_31360915_31361019_31361373_31361504_31361796_31362032_31362341_31362474_31363381_31363798_31364906_31365040_31365356_31365443_31365730_31365801_31377646
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068977	chr5	+	2204	18	FSM	ENSMUSG00000029148.16	ENSMUST00000031034.12	2203	18	-1	0	-1	0	multi-exon	FALSE	canonical	3	461	junction_13	30.9676692663879	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTGCTTGCGGC	NA	False	NA	33	True	AATAAA	-21	NA	31398206	31408910	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_31398347_31401106_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000068998	chr5	-	1433	8	FSM	ENSMUSG00000038552.15	ENSMUST00000041266.11	1375	8	-55	-3	10	3	multi-exon	FALSE	canonical	2	3	junction_1	7.19977323905952	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGGTTCCTGTATGGT	NA	False	NA	NA	False	AATAAA	-20	NA	31453270	31450226	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_31450509_31450757_31450831_31451029_31451158_31451447_31451538_31451973_31452179_31452349_31452466_31452556_31452702_31452876
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069000	chr5	+	3302	14	FSM	ENSMUSG00000062761.8	ENSMUST00000076264.8	3299	14	-3	0	1	0	multi-exon	FALSE	canonical	3	217	junction_1	41.4283440690995	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7143	False	NA	16	True	AATAAA	-17	NA	31609775	31639098	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_31609922_31610498_31610558_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069004	chr5	+	3233	13	NIC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	92.8146300728261	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7147	False	NA	16	True	AATAAA	-17	NA	31609779	31639098	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_31609922_31622795_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069006	chr5	+	3239	13	NIC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_1	77.4128093764563	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7147	False	NA	16	True	AATAAA	-17	NA	31609779	31639098	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_31609922_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069015	chr5	-	1433	2	NNC	ENSMUSG00000107142.2	novel	1535	2	NA	NA	-1209	2	intron_retention	FALSE	canonical	3	94	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTGGTTATGTCTTTTG	713	False	NA	0	True	NA	NA	NA	31646501	31643974	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_31645334_31646427
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069020	chr5	+	2570	14	FSM	ENSMUSG00000064037.14	ENSMUST00000076949.13	3144	14	-4	578	-4	-578	multi-exon	FALSE	canonical	3	859	junction_7	68.5179542833234	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGACACCTCTGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	31652080	31669670	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069033	chr5	+	2107	13	NIC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-2	557	intron_retention	FALSE	canonical	3	859	junction_7	68.3745302644844	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGTGGTAAGCTTTCCT	NA	False	NA	25	True	GATAAA	-14	NA	31652108	31668760	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069035	chr5	-	2637	5	FSM	ENSMUSG00000053134.14	ENSMUST00000065388.11	2693	5	51	5	9	1	multi-exon	FALSE	canonical	3	72	junction_3	3.34477204006491	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGTTATTCCAATTCTT	NA	False	NA	0	True	AATAAA	-20	NA	31684066	31671912	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_31673271_31675610_31675849_31677426_31677752_31679997_31680606_31683958
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069048	chr5	+	2422	13	FSM	ENSMUSG00000029141.17	ENSMUST00000114533.9	2424	13	7	-5	5	0	multi-exon	FALSE	canonical	3	47	junction_10	19.394300422776	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGTGATGATCATTCCC	NA	False	NA	11	True	AGTAAA	-21	NA	31684345	31711386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31705954_31706026_31708056_31708127_31711082
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069056	chr5	+	477	3	NNC	ENSMUSG00000106918.4	novel	478	4	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1166.5	251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	NA	False	NA	19	True	AATAAA	-22	NA	31771272	31779988	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_31771375_31773724_31773832_31779720
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069068	chr5	+	1632	12	FSM	ENSMUSG00000052139.19	ENSMUST00000201352.4	1888	12	256	0	-30	0	multi-exon	FALSE	canonical	3	639	junction_9	56.490326824983	453	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTCCTGAAGGCTTC	5808	False	NA	35	True	AATAAA	-31	NA	31855283	32242306	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069081	chr5	+	2976	8	FSM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	219	2767	-90	0	multi-exon	FALSE	canonical	3	1274	junction_2	51.5470856675363	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTGAGTGATTATTCTGT	2914	False	NA	23	True	AGTAAA	-20	NA	32616405	32650100	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069092	chr5	-	2160	8	FSM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	20	3	0	1	multi-exon	FALSE	canonical	3	685	junction_2	53.5235976948867	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCGTAGCTTTGTATTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	32942970	32893647	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069102	chr5	-	2008	5	NIC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	-2	5260	combination_of_known_splicesites	FALSE	canonical	3	86	junction_4	14.456832294801	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAGCTCAGAAGGGCAA	7051	False	NA	NA	False	NA	NA	NA	33011602	32987701	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33011436
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069134	chr5	-	2274	9	NIC	ENSMUSG00000037373.13	novel	2436	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	123	junction_8	298.867759218019	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGGCACCAGTTTTAAT	NA	False	NA	-14	True	AATAAA	-21	NA	33432336	33405066	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_33406028_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33432122
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069163	chr5	+	2182	9	FSM	ENSMUSG00000079562.8	ENSMUST00000114449.7	2193	9	10	1	10	-1	multi-exon	FALSE	canonical	3	507	junction_4	39.7106723690244	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGTGAGGTGTTTGTA	NA	False	NA	19	True	AATAAA	-20	NA	33492862	33530639	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_33492990_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529154_33529610
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069167	chr5	+	2142	9	NNC	ENSMUSG00000079562.8	novel	2193	9	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_2	182.765175498507	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTGAGGTGTTTGT	NA	False	NA	18	True	AATAAA	-19	NA	33492897	33530638	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_33492990_33515783_33515967_33517699_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529154_33529610
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069186	chr5	-	2162	7	FSM	ENSMUSG00000037339.18	ENSMUST00000150033.8	2112	7	-47	-3	0	3	multi-exon	FALSE	canonical	3	30	junction_2	74.8793473974411	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTGCCTAGATTCTTTT	NA	False	NA	-9	True	ATTAAA	-17	NA	33786979	33757696	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_33758225_33764807_33765572_33765674_33765834_33767775_33767831_33771946_33772179_33786196_33786322_33786680
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069187	chr5	-	2007	6	NIC	ENSMUSG00000037339.18	novel	2009	6	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	70.7937850379537	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTGCCTAGATTCTTTT	NA	False	NA	-9	True	ATTAAA	-17	NA	33786979	33757696	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786192_33786322_33786680
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069189	chr5	-	2346	5	FSM	ENSMUSG00000037339.18	ENSMUST00000045329.10	2346	5	3	-3	3	3	multi-exon	FALSE	canonical	3	127	junction_2	24.5089269450949	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTGCCTAGATTCTTTT	NA	False	NA	-9	True	ATTAAA	-17	NA	33786963	33757696	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786196
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069227	chr5	-	2341	4	FSM	ENSMUSG00000019295.9	ENSMUST00000019439.9	2828	4	487	0	-30	0	multi-exon	FALSE	canonical	3	50	junction_3	8.99382504215469	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACTTCATTTTGTTTAAC	NA	False	NA	1	True	AATAAA	-19	NA	33815273	33810559	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814966
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069264	chr5	+	2067	15	NIC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	239.805927059907	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	32	True	ACTAAA	-20	NA	33815928	33829542	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_33816072_33818686_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069300	chr5	-	1993	5	FSM	ENSMUSG00000079555.3	ENSMUST00000060049.8	2073	5	69	11	-6	-11	multi-exon	FALSE	canonical	3	397	junction_4	45.778679535347	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTACTATGCCTGCTGTG	9395	False	NA	-11	True	AATAAA	-40	NA	34326802	34311234	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_34311451_34320866_34321096_34323259_34323700_34324748_34325788_34326733
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069316	chr5	+	2910	7	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	981.947667761486	197	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCATTTATTCAGTTAT	NA	False	NA	28	True	AATAAA	-18	NA	34493713	34510783	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_34493829_34499865_34500024_34504118_34504246_34506007_34506100_34507255_34507416_34508133_34508183_34508574
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069319	chr5	+	2971	7	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-10	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	824.87387924862	1591	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTATTCAGTTATTCTT	NA	False	NA	32	True	AATAAA	-22	NA	34493713	34510787	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507255_34507416_34508133_34508183_34508574
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069333	chr5	+	2912	7	NIC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	1293	junction_4	355.934919144872	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	25	True	AATAAA	-15	NA	34493753	34510780	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34507255_34507416_34508133_34508183_34508574
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069335	chr5	+	2766	6	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1079.41491559085	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	25	True	AATAAA	-15	NA	34493753	34510780	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_34493886_34504118_34504246_34506007_34506100_34507255_34507416_34508133_34508183_34508574
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069396	chr5	-	1870	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114329.8	1906	13	38	-2	-14	0	multi-exon	FALSE	canonical	3	69	junction_12	91.0092715057098	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	-5	True	AATAAA	-19	NA	34794498	34790990	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794131_34794270
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069425	chr5	-	1446	8	NNC	ENSMUSG00000029103.17	novel	2981	8	NA	NA	-8	98	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_4	301.367834097422	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTGGTATCTCGA	NA	False	NA	0	True	AATACA	-23	NA	35263048	35250314	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255031_35255496_35255618_35256500_35256623_35259738_35259884_35262822
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069434	chr5	-	3808	11	FSM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	-16	-2	-16	2	multi-exon	FALSE	canonical	3	72	junction_3	7.3	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAATAGAAATATTTATAC	7610	False	NA	NA	False	TATAAA	-23	NA	35732430	35713544	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069477	chr5	+	241	1	Intergenic	novelGene_286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCCCTAGCTAAGGATGTA	NA	False	NA	NA	False	NA	NA	NA	36028365	36028606	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_36028400_36028600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069518	chr5	-	3568	8	FSM	ENSMUSG00000039474.14	ENSMUST00000043964.13	3787	8	219	0	-53	0	multi-exon	FALSE	canonical	3	110	junction_7	10.259888211986	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGCCTTCTGGTTTGAT	NA	False	NA	1	True	AATAAA	-18	NA	37146330	37123447	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_37126023_37128901_37129054_37130529_37130611_37131077_37131249_37132814_37132960_37134227_37134311_37139401_37139642_37146209
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069525	chr5	+	2558	13	NIC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	99	junction_1	26.6327909832138	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	NA	False	NA	17	True	AATAAA	-20	NA	37185649	37282643	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_37185944_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069538	chr5	+	2093	12	Fusion	ENSMUSG00000063646.19_ENSMUSG00000113373.2	novel	516	2	NA	NA	2843	-2	multi-exon	FALSE	canonical	3	13	junction_1	47.5912346954217	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGCCTTTTTTATTTG	3224	False	NA	15	True	AATAAA	-18	NA	37245556	37282641	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr5_+_37245651_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069543	chr5	+	2119	12	Fusion	ENSMUSG00000063646.19_ENSMUSG00000113373.2	novel	516	2	NA	NA	2843	0	multi-exon	FALSE	canonical	3	9	junction_1	48.7096304561383	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	3224	False	NA	17	True	AATAAA	-20	NA	37245556	37282643	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr5_+_37245675_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069546	chr5	+	2074	11	ISM	ENSMUSG00000063646.19	ENSMUST00000121010.9	2496	20	5684	22702	-26	0	internal_fragment	FALSE	canonical	3	147	junction_1	11.74265728019	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	2454	False	NA	17	True	AATAAA	-20	NA	37248397	37282643	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069559	chr5	-	1931	2	FSM	ENSMUSG00000048450.11	ENSMUST00000063116.10	1935	2	1	3	0	-3	multi-exon	FALSE	canonical	2	10	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTCTGTGGGTTTAGTT	NA	False	NA	NA	False	AATAAA	-22	NA	37981926	37977831	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_37979045_37981208
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069582	chr5	+	1520	9	FSM	ENSMUSG00000067367.10	ENSMUST00000087514.9	1563	9	36	7	-14	3	multi-exon	FALSE	canonical	3	2026	junction_5	151.553981719386	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTATCTATGATAACAA	NA	False	NA	16	True	AATAAA	-17	NA	38377849	38391643	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_38377980_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069601	chr5	-	4567	4	FSM	ENSMUSG00000046572.11	ENSMUST00000057258.11	6804	4	-4	2241	3	-2241	multi-exon	FALSE	canonical	3	45	junction_3	106.871677986057	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATATATAAAATCAAGTC	NA	False	NA	NA	False	GATAAA	-12	NA	38842097	38828069	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_38832197_38839827_38840126_38840535_38840602_38842021
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069608	chr5	-	1662	7	FSM	ENSMUSG00000029128.13	ENSMUST00000031011.12	1635	7	-25	-2	-22	2	multi-exon	FALSE	canonical	3	424	junction_3	45.374980869295	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTGGGATTTTCATTTA	NA	False	NA	-2	True	AATAAA	-16	NA	41865522	41782316	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069645	chr5	-	3527	14	FSM	ENSMUSG00000046985.12	ENSMUST00000055128.12	3513	14	-19	5	-15	0	multi-exon	FALSE	canonical	3	70	junction_1	11.6390487421138	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCACTGAATTTCTTGTGG	NA	False	NA	0	True	AATAAA	-27	NA	44383983	44332500	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_44334525_44336202_44336364_44340039_44340117_44341922_44341992_44342296_44342357_44343573_44343684_44345960_44346042_44349422_44349493_44349708_44349807_44350528_44350665_44351589_44351753_44361551_44361671_44375445_44375577_44383755
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069660	chr5	+	2294	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	-43	16	-43	-16	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	1681	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGTTCACTGTGATTC	NA	False	NA	19	True	AATAAA	-18	NA	45650672	45670017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069686	chr5	+	3313	21	FSM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	-32	422	-32	-3	multi-exon	FALSE	canonical	3	453	junction_14	43.4953733171702	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCCTATACTCAGTATT	NA	False	NA	15	True	ATTAAA	-22	NA	45827228	45857466	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069693	chr5	+	3281	6	FSM	ENSMUSG00000031558.16	ENSMUST00000172998.8	3265	6	1	-17	1	17	multi-exon	FALSE	canonical	3	145	junction_5	11.9833217431562	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTTCTTTTGGAAAGAC	NA	False	NA	NA	False	NA	NA	NA	48140496	48340516	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_48142561_48145180_48145253_48146461_48146534_48157650_48157723_48327496_48327569_48339587
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069715	chr5	-	3066	14	FSM	ENSMUSG00000029169.12	ENSMUST00000031061.12	3010	14	-56	0	-56	0	multi-exon	FALSE	canonical	3	749	junction_10	48.0023421519305	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTCTGTATCTTTTATT	NA	False	NA	2	True	AATAAA	-27	NA	52347912	52307544	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069722	chr5	-	2987	14	FSM	ENSMUSG00000029169.12	ENSMUST00000200186.5	2375	14	-133	-479	4	-11	multi-exon	FALSE	canonical	3	57	junction_4	209.215072940651	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCCCAAGTCCTTCTG	NA	False	NA	-9	True	AATAAA	-16	NA	52347852	52307555	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314912_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069743	chr5	+	2802	12	FSM	ENSMUSG00000029179.15	ENSMUST00000031077.13	5743	12	13	2928	13	1459	multi-exon	FALSE	canonical	3	82	junction_6	13.7197450763007	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATGCATTTTATAATTT	NA	False	NA	NA	False	AATAAA	-14	NA	52940408	52977985	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069759	chr5	+	5289	11	FSM	ENSMUSG00000039191.13	ENSMUST00000087360.9	5252	11	-33	-4	-33	0	multi-exon	FALSE	canonical	3	64	junction_1	131.697532247191	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGATGTCTTCTGTGGGA	NA	False	NA	16	True	AATAAA	-22	NA	53713142	53814704	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_53713246_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069793	chr5	-	3107	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	-30	164	-30	4	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGACATCTTACAGGACCAG	NA	False	NA	-9	True	AATAAA	-27	NA	64126270	64066403	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069803	chr5	+	2392	14	FSM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	-19	-4	-19	4	multi-exon	FALSE	canonical	3	609	junction_6	76.13589532023	628	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTTTATTTTTTTTAAC	NA	False	NA	NA	False	AATAAA	-19	NA	64250273	64285698	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069819	chr5	+	2152	6	NNC	ENSMUSG00000029178.15	novel	298	4	NA	NA	-5441	602	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	263.203039496127	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTGAGGCAGTATAAAAT	NA	False	NA	NA	False	NA	NA	NA	64955289	64987495	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_64955374_64974077_64974174_64979216_64979701_64980221_64980373_64984452_64984614_64986319
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069821	chr5	+	893	4	NNC	ENSMUSG00000029178.15	novel	4016	3	NA	NA	-5441	-2	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	319.679005670793	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGATGTGCTGTGGATG	NA	False	NA	16	True	AATAAA	-16	NA	64955289	64980450	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_64955374_64974077_64974174_64979216_64979701_64980221
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069842	chr5	+	3408	1	FSM	ENSMUSG00000106205.2	ENSMUST00000198074.2	1722	1	-491	-1195	-491	1195	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGGTTATTTCTTTTAG	NA	False	NA	NA	False	AAGAAA	-9	NA	64960865	64964273	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_64960900_64964300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069861	chr5	-	4723	25	FSM	ENSMUSG00000029191.17	ENSMUST00000172732.8	4699	25	-24	0	-24	0	multi-exon	TRUE	canonical	3	281	junction_12	79.0184138174275	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTACTGAGTCTTGCCCCT	-1	True	NA	-4	True	AATAAA	-19	NA	65492988	65419194	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436164_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069871	chr5	-	4714	25	NIC	ENSMUSG00000029191.17	novel	4699	25	NA	NA	-14	-2	combination_of_known_junctions	FALSE	canonical	3	185	junction_1	102.558519880115	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGTACTGAGTCTTGCCC	9	False	NA	-6	True	AATAAA	-17	NA	65492978	65419196	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_65420493_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436164_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069880	chr5	+	2690	4	ISM	ENSMUSG00000029195.11	ENSMUST00000031096.11	3540	5	23569	0	23475	0	3prime_fragment	FALSE	canonical	3	98	junction_2	21.6024689946929	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTGTCTTAGACTTCG	NA	False	NA	24	True	AAAAAG	-6	NA	65529225	65541350	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_65529804_65533022_65533292_65536270_65537415_65540651
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069891	chr5	-	845	7	FSM	ENSMUSG00000047215.15	ENSMUST00000120094.5	680	7	-51	-114	13	0	multi-exon	FALSE	canonical	3	5084	junction_6	3284.20622914511	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548774	65545706	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069907	chr5	-	2317	12	NNC	ENSMUSG00000029201.15	novel	2550	12	NA	NA	-16	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	173.904600046564	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCAATTTACGTATGTTT	NA	False	NA	-10	True	AATAAA	-25	NA	65585746	65570560	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853_65574988_65575820_65575952_65577591_65577687_65579977_65580122_65580499_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65585656
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069938	chr5	-	2605	7	ISM	ENSMUSG00000070780.12	ENSMUST00000167950.8	4895	8	250	2193	108	-148	3prime_fragment	FALSE	canonical	3	18	junction_6	10.0235833025033	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACACCCGCGCATCTAGGG	NA	False	NA	NA	False	NA	NA	NA	66309017	66176092	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_-_66176780_66179970_66180177_66182295_66182503_66183472_66184633_66203429_66203557_66255049_66255132_66308881
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069941	chr5	+	201	1	Intergenic	novelGene_287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATAGAGGAAGAGAAACAC	NA	False	NA	NA	False	NA	NA	NA	66420452	66420653	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_66420500_66420700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069944	chr5	-	3296	16	NNC	ENSMUSG00000029207.17	novel	6333	16	NA	NA	23587	1	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_15	19.4792196968975	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTCTTTTCAGATGGTT	NA	False	NA	NA	False	ATTAAA	-25	NA	66752396	66459213	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66752306
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000069960	chr5	+	1017	8	NIC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	178.588113506231	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833581	66844577	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_66833666_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070008	chr5	+	758	3	FSM	ENSMUSG00000046808.18	ENSMUST00000169617.3	761	3	0	3	0	-3	multi-exon	FALSE	canonical	3	101	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGATGGGGTGTTCCC	NA	False	NA	NA	False	NA	NA	NA	72360671	72387815	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_72360907_72384974_72385302_72387619
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070012	chr5	-	3712	23	FSM	ENSMUSG00000072889.10	ENSMUST00000087216.12	3712	23	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_22	12.1822421907212	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTGATAAAGGATATTTA	NA	False	NA	NA	False	ATTAAA	-16	NA	72717027	72670643	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_72671675_72673554_72673609_72674368_72674456_72675537_72675643_72679490_72679561_72680851_72681019_72681429_72681571_72681989_72682012_72685501_72685594_72686354_72686515_72686726_72686848_72690387_72690479_72694708_72694832_72695492_72695618_72696948_72697064_72697636_72697738_72697834_72697997_72698196_72698376_72707634_72707766_72709985_72710096_72713514_72713689_72716356_72716612_72716931
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070039	chr5	-	232	1	Intergenic	novelGene_288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTAAAGGAGACCCT	NA	False	NA	NA	False	AATAAA	-18	NA	73637284	73637052	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_-_73637100_73637300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070060	chr5	-	3217	9	FSM	ENSMUSG00000054814.15	ENSMUST00000068058.14	4557	9	28	1312	17	-1312	multi-exon	FALSE	canonical	3	162	junction_8	42.7755771439732	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTGCAGCTAATTTATTA	NA	False	NA	-1	True	ATTAAA	-17	NA	74229064	74160698	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74228910
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070072	chr5	+	317	2	FSM	ENSMUSG00000106943.3	ENSMUST00000117249.2	1036	2	36	683	36	-683	multi-exon	FALSE	canonical	3	72	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAAGCTTCATTTAAAAC	NA	False	NA	NA	False	AATGAA	-1	NA	74253779	74254314	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_74253801_74254018
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070076	chr5	+	1219	1	FSM	ENSMUSG00000093355.3	ENSMUST00000175614.3	121	1	-411	-687	-411	687	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTTCACTTGTTCTT	NA	False	NA	19	True	AATAAA	-21	NA	74253779	74254998	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_74253800_74255000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070094	chr5	+	1994	17	FSM	ENSMUSG00000029227.16	ENSMUST00000080164.12	4673	17	42	2637	7	8	multi-exon	FALSE	canonical	3	373	junction_9	134.520909155417	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTTGTAATATTTA	NA	False	NA	30	True	AATAAA	-31	NA	74696151	74756814	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070097	chr5	+	1961	16	FSM	ENSMUSG00000029227.16	ENSMUST00000113535.9	1969	16	16	-8	-6	8	multi-exon	FALSE	canonical	3	220	junction_11	150.805393360671	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTTGTAATATTTA	NA	False	NA	30	True	AATAAA	-31	NA	74696157	74756814	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070103	chr5	-	2563	11	FSM	ENSMUSG00000029228.16	ENSMUST00000117388.8	2564	11	1	0	1	0	multi-exon	FALSE	canonical	3	14	junction_9	3.95474398665704	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTAGAGGATTTCTT	NA	False	NA	1	True	AATAAA	-19	NA	74863572	74757764	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_74758072_74758436_74758596_74766697_74766924_74768397_74768567_74771337_74771473_74780634_74781007_74784142_74784346_74788008_74788162_74788780_74789023_74846056_74846534_74863452
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070115	chr5	+	5199	21	FSM	ENSMUSG00000005672.13	ENSMUST00000144270.8	5241	21	46	-4	7	4	multi-exon	FALSE	canonical	3	795	junction_9	132.566766197264	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTTTGTTTTTTAA	773	False	NA	18	True	NA	NA	NA	75735621	75817386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070119	chr5	+	5182	21	FSM	ENSMUSG00000005672.13	ENSMUST00000005815.7	5214	21	36	-4	36	4	multi-exon	FALSE	canonical	3	392	junction_9	204.916348786523	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTTTGTTTTTTAA	802	False	NA	18	True	NA	NA	NA	75735650	75817386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070125	chr5	+	5163	21	NNC	ENSMUSG00000005672.13	novel	5241	21	NA	NA	39	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	294.545819865093	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTTTGTTTTTTAA	805	False	NA	18	True	NA	NA	NA	75735653	75817386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776150_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070126	chr5	+	5171	21	NNC	ENSMUSG00000005672.13	novel	5241	21	NA	NA	39	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	295.25065622281	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTTTGTTTTTTAA	805	False	NA	18	True	NA	NA	NA	75735653	75817386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801490_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070128	chr5	+	5183	21	NNC	ENSMUSG00000005672.13	novel	5214	21	NA	NA	39	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	330.658324407537	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTTTGTTTTTTAA	805	False	NA	18	True	NA	NA	NA	75735653	75817386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801490_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070170	chr5	+	3351	19	FSM	ENSMUSG00000036435.14	ENSMUST00000087133.11	3371	19	17	3	0	-3	multi-exon	FALSE	canonical	3	86	junction_10	33.5248203611431	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATATTCTTAAGCCTT	NA	False	NA	14	True	AATAAA	-24	NA	76677174	76718138	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76705665_76705711_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070173	chr5	+	206	1	FSM	ENSMUSG00000036435.14	ENSMUST00000202151.2	2990	1	457	2327	457	-2327	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCTGAAGCTAAGATTCT	NA	False	NA	NA	False	NA	NA	NA	76700949	76701155	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_76700900_76701200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070188	chr5	+	2112	10	FSM	ENSMUSG00000029247.18	ENSMUST00000117536.8	1862	10	-54	-196	7	0	multi-exon	FALSE	canonical	3	185	junction_1	1007.72571224074	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	293	False	NA	19	True	ATTAAA	-22	NA	77099160	77115356	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070217	chr5	+	2048	9	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	3	450	junction_1	967.654089796555	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	721	False	NA	19	True	ATTAAA	-22	NA	77099588	77115356	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_77099683_77104395_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070224	chr5	+	432	1	ISM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	15767	0	917	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	NA	False	NA	15	True	ATTAAA	-18	NA	77114920	77115352	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_77114900_77115400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070230	chr5	+	3607	19	FSM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	18	0	-6	0	multi-exon	FALSE	canonical	3	245	junction_6	28.4995126663987	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCGGTATTGGCATTTT	NA	False	NA	28	True	AATAAA	-36	NA	77122547	77147784	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624_77143763_77144498_77144537_77145269_77145430_77146038
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070240	chr5	+	2051	4	FSM	ENSMUSG00000029249.16	ENSMUST00000080359.12	7004	4	-81	5034	-81	-5034	multi-exon	FALSE	canonical	3	740	junction_1	62.4731053245226	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGGTACCAACGTGCCAAAG	3615	False	NA	6	True	AAAAAG	-29	NA	77413256	77429245	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_77413636_77415778_77416671_77423080_77423165_77428549
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070278	chr5	+	1186	1	FSM	ENSMUSG00000079067.6	ENSMUST00000120716.2	279	1	-97	-810	-97	810	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTCAATTTATTACATTAA	NA	False	NA	NA	False	AATAAA	-34	NA	84271074	84272260	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_84271100_84272300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070328	chr5	-	5247	1	Intergenic	novelGene_289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGTCTTGGCTACATT	NA	False	NA	NA	False	NA	NA	NA	89356998	89351751	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_-_89351800_89357000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070350	chr5	-	3845	24	ISM	ENSMUSG00000055204.16	ENSMUST00000081914.13	8057	33	46	26273	3	-1382	5prime_fragment	TRUE	canonical	1	45	junction_23	31.4708134356053	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAGAACAAAGAAGGAAAT	NA	False	NA	NA	False	NA	NA	NA	90514041	90402596	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_-_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070362	chr5	-	4218	11	FSM	ENSMUSG00000029405.17	ENSMUST00000113127.7	4182	11	-28	-8	-28	8	multi-exon	FALSE	canonical	3	1117	junction_4	208.26764030929	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATGTCCCTAATTTAATC	NA	False	NA	-10	True	AATAAA	-23	NA	92231606	92200014	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070366	chr5	-	4291	12	FSM	ENSMUSG00000029405.17	ENSMUST00000202258.4	1884	12	-67	-2340	-6	4	multi-exon	FALSE	canonical	3	524	junction_5	444.293682188997	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTATGTCCCTAATTT	NA	False	NA	-14	True	AATAAA	-19	NA	92231584	92200018	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070384	chr5	-	1933	12	FSM	ENSMUSG00000029405.17	ENSMUST00000169094.8	2716	12	0	783	0	0	multi-exon	FALSE	canonical	3	261	junction_11	559.822935407495	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	False	NA	NA	False	AATGAA	-19	NA	92231372	92202358	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070395	chr5	-	559	1	FSM	ENSMUSG00000084111.5	ENSMUST00000121821.2	636	1	-38	115	-38	-115	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTTTAAGGCTTTTGCCA	NA	False	NA	NA	False	AAAAAG	-33	NA	92288826	92288267	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_92288300_92288800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070401	chr5	+	193	1	Intergenic	novelGene_290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTAAACTCACTACCCCT	NA	False	NA	NA	False	NA	NA	NA	92364078	92364271	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_92364100_92364300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070410	chr5	-	5010	22	FSM	ENSMUSG00000029415.5	ENSMUST00000031364.5	5020	22	12	-2	12	2	multi-exon	FALSE	canonical	3	262	junction_13	31.6626205793221	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGAAATCTCTCCATAA	NA	False	NA	-4	True	AATAAA	-19	NA	92457871	92431866	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446121_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070415	chr5	-	1023	8	FSM	ENSMUSG00000029415.5	ENSMUST00000202604.2	996	8	0	-27	0	27	multi-exon	FALSE	canonical	3	305	junction_2	27.4456791885799	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGTGATAAGCAATTTT	NA	False	NA	NA	False	NA	NA	NA	92457848	92449466	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070425	chr5	-	2067	11	NIC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	-4	-5	combination_of_known_splicesites	FALSE	canonical	3	22	junction_7	179.096761556428	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATTCTGTCTGGTGTTT	NA	False	NA	-5	True	AATAAA	-20	NA	92582986	92563403	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92575958_92576186_92578659_92578813_92578897_92578982_92582862
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070433	chr5	-	2320	1	Genic_Genomic	ENSMUSG00000029426.9	novel	NA	NA	NA	NA	62006	2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGTGAACTGTCTCTC	NA	False	NA	-9	True	ATTAAA	-18	NA	92591490	92589170	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr5_-_92589200_92591500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070437	chr5	-	4720	12	FSM	ENSMUSG00000029426.9	ENSMUST00000031377.9	4698	12	-22	0	-22	0	multi-exon	TRUE	canonical	3	99	junction_7	16.1496104397404	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCACTGTGAACTGTCTC	NA	False	NA	-11	True	ATTAAA	-16	NA	92653518	92589172	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_92592144_92594162_92594322_92596403_92596456_92597729_92597804_92599205_92599325_92601898_92602069_92602590_92602711_92607900_92607993_92608612_92608802_92609795_92609944_92633055_92633214_92653050
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070453	chr5	+	1512	5	ISM	ENSMUSG00000058013.12	ENSMUST00000201700.4	3478	9	-1	12055	0	1	5prime_fragment	FALSE	canonical	3	719	junction_4	22.6867251933813	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCATAGTACTTTGTTC	NA	False	NA	NA	False	AATAAA	-16	NA	93241295	93305562	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070454	chr5	+	2442	10	NIC	ENSMUSG00000058013.12	novel	2428	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_9	236.171521683545	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGCCCATCCCTGCCT	NA	False	NA	4	True	TTTAAA	-16	NA	93241295	93324296	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93323262
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070455	chr5	+	2088	7	ISM	ENSMUSG00000058013.12	ENSMUST00000201700.4	3478	9	-1	6465	0	2047	5prime_fragment	FALSE	canonical	3	719	junction_4	29.8700890896265	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAACTTTAAAAGG	NA	False	NA	NA	False	NA	NA	NA	93241295	93311152	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070470	chr5	-	2590	7	NNC	ENSMUSG00000063015.13	novel	2804	7	NA	NA	-23	-4	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	153.567574702474	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGGTTTGTGTAGGAGTT	NA	False	NA	-6	True	AATAAA	-14	NA	93354310	93329795	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_93331114_93335446_93335678_93335938_93336080_93337005_93337081_93337422_93337552_93350163_93350322_93353772
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070476	chr5	-	2854	8	NNC	ENSMUSG00000063015.13	novel	2804	7	NA	NA	-25	-4	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_7	182.803898498151	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGGTTTGTGTAGGAGTT	NA	False	NA	-6	True	AATAAA	-14	NA	93354312	93329795	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_93331280_93335446_93335678_93335938_93336080_93337005_93337081_93337422_93337552_93350163_93350322_93351125_93351222_93353772
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070498	chr5	+	1276	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-72	-202	-72	202	mono-exon	FALSE	NA	NA	NA	NA	NA	960	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACACCGTCAATAAGACAAA	NA	False	NA	NA	False	AATAAA	-38	NA	96009500	96010776	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_96009500_96010800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070506	chr5	-	3766	6	ISM	ENSMUSG00000055725.12	ENSMUST00000112969.10	2257	7	-51	6289	-28	2663	5prime_fragment	TRUE	canonical	3	151	junction_3	20.8096131631513	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCTGCCTGCCTTCTT	NA	False	NA	NA	False	AATAAA	-15	NA	97259483	97241127	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_-_97243920_97245337_97245429_97247404_97247603_97251218_97251375_97256024_97256188_97259117
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070513	chr5	-	3428	2	FSM	ENSMUSG00000046000.6	ENSMUST00000060265.6	3424	2	-3	-1	-3	1	multi-exon	FALSE	canonical	3	176	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTGAGTTAATAACATT	NA	False	NA	-2	True	AATAAA	-20	NA	97540241	97530055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_97532729_97539486
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070524	chr5	-	1767	9	FSM	ENSMUSG00000000568.16	ENSMUST00000172361.8	6811	9	-23	5067	-23	0	multi-exon	FALSE	canonical	3	2301	junction_7	859.13983145935	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGGCTCTTTTATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	100126820	100108860	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_100109193_100110373_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392_100124450_100126250
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070527	chr5	-	1586	8	FSM	ENSMUSG00000000568.16	ENSMUST00000019128.15	2000	8	10	404	7	0	multi-exon	FALSE	canonical	3	1409	junction_2	1208.23732295085	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGGCTCTTTTATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	100126786	100108860	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392_100124450_100126250
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070553	chr5	+	1834	6	FSM	ENSMUSG00000029326.14	ENSMUST00000169390.8	1833	6	12	-13	12	13	multi-exon	FALSE	canonical	3	460	junction_1	20.2918702932973	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGACGTGTGGATTGTGCCT	NA	False	NA	28	True	AATAAA	-28	NA	100187855	100216632	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070567	chr5	-	4213	27	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-20	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	178.290887407473	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8088	False	NA	-7	True	ATTAAA	-19	NA	100564113	100509507	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530616_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070596	chr5	-	926	5	FSM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	19	-319	0	319	multi-exon	FALSE	canonical	3	343	junction_4	12.3389626792531	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTTTTGGTAAAGATTT	NA	False	NA	-2	True	ATTAAA	-16	NA	100577375	100568381	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_100568832_100569826_100569901_100574594_100574664_100576955_100577098_100577184
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070602	chr5	-	4485	13	FSM	ENSMUSG00000118665.1	ENSMUST00000239512.1	4451	13	-26	-8	-26	8	multi-exon	FALSE	canonical	3	163	junction_11	17.2980409937722	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGCATTTTTTCTTTAG	NA	False	NA	NA	False	AATAAA	-42	NA	100648519	100589891	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_100592137_100594382_100594586_100598478_100598617_100598764_100598868_100600130_100600203_100600859_100600952_100601798_100601997_100602293_100602368_100607444_100607662_100623547_100623691_100628056_100628181_100632998_100633715_100648359
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070605	chr5	-	2270	13	NIC	ENSMUSG00000118665.1	novel	4451	13	NA	NA	-13	-1372	combination_of_known_junctions	FALSE	canonical	3	30	junction_11	48.956542520439	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGATTTTTAGAGTGGATT	NA	False	NA	NA	False	NA	NA	NA	100648506	100591430	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_100592137_100594382_100594586_100598478_100598617_100598764_100598868_100600130_100600203_100600859_100600952_100601798_100601997_100602293_100602368_100607444_100607662_100623547_100623691_100628056_100628181_100633661_100633715_100648359
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070634	chr5	-	3685	18	FSM	ENSMUSG00000035266.17	ENSMUST00000044684.14	3689	18	-2	6	-2	0	multi-exon	FALSE	canonical	3	40	junction_16	11.2714232774287	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCGCTCTGGGTGATTA	NA	False	NA	-1	True	ATTAAA	-20	NA	100946466	100910016	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_100910503_100912806_100912942_100914553_100914668_100916147_100916322_100918263_100918363_100919599_100919758_100921810_100922031_100926597_100926703_100927017_100927160_100930823_100931064_100933147_100933294_100934849_100934949_100938004_100938103_100939202_100939276_100939642_100939844_100940529_100940709_100944219_100944929_100946159
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070655	chr5	-	2129	9	FSM	ENSMUSG00000035234.19	ENSMUST00000055245.13	2139	9	10	0	-8	0	multi-exon	FALSE	canonical	3	145	junction_2	23.2725025512943	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	False	NA	-3	True	AATAAA	-19	NA	100968821	100953057	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070666	chr5	+	2142	13	FSM	ENSMUSG00000029330.9	ENSMUST00000031273.9	3924	13	-40	1822	-40	589	multi-exon	TRUE	canonical	3	31	junction_6	11.4561361529774	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGATTGTCCACTTTTCT	NA	False	NA	NA	False	ATTAAA	-13	NA	101912955	101969902	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_101913356_101929240_101929369_101939340_101939438_101944869_101944968_101946242_101946383_101954428_101954488_101956531_101956615_101957751_101957840_101960360_101960430_101962265_101962419_101963714_101963835_101965718_101965823_101969299
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070709	chr5	+	1407	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	3	0	0	0	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	31	True	AATAAA	-18	NA	104582986	104588916	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070715	chr5	+	1459	7	FSM	ENSMUSG00000029304.15	ENSMUST00000112748.8	1456	7	0	-3	0	0	multi-exon	FALSE	canonical	3	593	junction_1	2050.93187491822	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	31	True	AATAAA	-18	NA	104582986	104588916	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_104583115_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070729	chr5	+	203	1	Intergenic	novelGene_291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTAAAGAATCTCTGAATT	NA	False	NA	NA	False	NA	NA	NA	104725131	104725334	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_104725100_104725300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070760	chr5	+	4283	4	NNC	ENSMUSG00000046079.17	novel	3929	3	NA	NA	-19	0	intron_retention	FALSE	canonical	3	13	junction_1	254.10802602218	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAGTGGTTCACAACCTT	4949	False	NA	19	True	AATAAA	-30	NA	105848712	105963076	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_105848952_105862914_105863327_105880095_105880241_105959589
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070783	chr5	+	2991	12	FSM	ENSMUSG00000029283.18	ENSMUST00000031221.12	2961	12	-22	-8	-22	8	multi-exon	FALSE	canonical	3	169	junction_8	37.8828119074671	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTTATTTAAAGAGTAATA	NA	False	NA	18	True	AATAAA	-23	NA	107112165	107132306	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070817	chr5	+	2280	13	FSM	ENSMUSG00000033773.15	ENSMUST00000065422.12	2268	13	-14	2	0	-2	multi-exon	TRUE	canonical	3	138	junction_1	12.1951720866178	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACTTTTTCAGAAGCTGA	NA	False	NA	24	True	AATAAA	-17	NA	107745586	107809702	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070851	chr5	+	2130	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4939	17	intron_retention	FALSE	canonical	3	182	junction_1	547.456177850489	28	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGTGGGTTTTATTAT	NA	False	NA	45	True	NA	NA	NA	108208600	108254883	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070852	chr5	+	3969	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4939	0	intron_retention	FALSE	canonical	3	616	junction_3	357.553592386612	56	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108208600	108256870	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_108208730_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070863	chr5	+	1528	13	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4937	20	intron_retention	FALSE	canonical	3	93	junction_2	638.511305694739	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTAGGTCGTCCTCCTGG	NA	False	NA	NA	False	AAAAAG	-12	NA	108208602	108251925	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_108208730_108217027_108217230_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070873	chr5	+	2329	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	17	intron_retention	FALSE	canonical	3	120	junction_2	625.91977009338	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGTGGGTTTTATTAT	NA	False	NA	45	True	NA	NA	NA	108208603	108254883	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_108208730_108217027_108217230_108221172_108221321_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070896	chr5	+	3087	3	FSM	ENSMUSG00000029265.5	ENSMUST00000031190.5	3085	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	201	junction_1	9	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTTTATATTTAATGAT	NA	False	NA	NA	False	AATAAA	-21	NA	108416760	108428392	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_108417676_108423434_108423599_108426384
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070913	chr5	+	252	1	Intergenic	novelGene_292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTACAAGAGAGGGGGCTG	4247	False	NA	NA	False	NA	NA	NA	108634286	108634538	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_108634300_108634500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070919	chr5	-	4472	28	FSM	ENSMUSG00000062234.15	ENSMUST00000046603.15	4453	28	-16	-3	0	0	multi-exon	FALSE	canonical	3	318	junction_10	27.4864725426801	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGCTTGTAAAGCACTTC	NA	False	NA	-25	True	ATTAAA	-26	NA	108777621	108717276	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070925	chr5	-	4100	28	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	72.9308445945778	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGCTTGTAAAGCAC	NA	False	NA	-28	True	ATTAAA	-23	NA	108777621	108717279	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_108717454_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070962	chr5	-	4004	23	FSM	ENSMUSG00000004815.13	ENSMUST00000053913.13	4938	23	26	908	26	-327	multi-exon	FALSE	canonical	3	33	junction_4	9.2499720794754	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTAAAGACATCTAAAGGT	NA	False	NA	NA	False	ATTAAA	-7	NA	108808651	108795466	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_108796678_108797010_108797164_108797243_108797356_108797452_108797600_108797690_108797792_108798066_108798246_108798355_108798505_108798682_108798835_108800259_108800376_108801046_108801086_108801501_108801653_108801949_108802012_108802221_108802277_108802409_108802501_108802581_108802803_108802973_108803075_108803155_108803231_108803305_108803460_108803709_108803836_108803911_108803998_108804289_108804390_108806071_108806152_108808308
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070969	chr5	+	3196	14	NNC	ENSMUSG00000033540.19	novel	3373	14	NA	NA	-10	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	15.2699573553149	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTGGCCTCCCAAGTCT	NA	False	NA	15	True	NA	NA	NA	108817150	108832421	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_108817384_108817984_108818126_108827364_108827451_108827569_108827678_108827976_108828073_108828160_108828364_108828436_108828617_108828726_108828944_108829245_108829459_108829537_108829660_108829767_108829898_108829965_108830043_108830918_108831020_108831132
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000070990	chr5	-	1461	8	NNC	ENSMUSG00000033467.13	novel	1323	8	NA	NA	-130	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	235.318455524007	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109706989	109702574	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704281_109704429_109704866_109705034_109705383_109705481_109706670
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071076	chr5	-	2053	6	FSM	ENSMUSG00000029500.17	ENSMUST00000112505.9	2098	6	24	21	-2	4	multi-exon	FALSE	canonical	3	275	junction_2	153.77594090104	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTGTTTTAAAGGGAAAA	NA	False	NA	-16	True	AATAAA	-22	NA	110417755	110407016	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_110408304_110413377_110413512_110413605_110413695_110413776_110413903_110414952_110415132_110417517
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071079	chr5	-	2049	6	FSM	ENSMUSG00000029500.17	ENSMUST00000059229.16	2044	6	-2	-3	-2	3	multi-exon	FALSE	canonical	3	390	junction_2	111.169420255752	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTGTTTTAAAGGGAAA	NA	False	NA	-17	True	AATAAA	-21	NA	110417755	110407017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_110408304_110413377_110413509_110413605_110413695_110413776_110413903_110414952_110415132_110417517
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071089	chr5	-	733	2	FSM	ENSMUSG00000029499.12	ENSMUST00000126882.2	466	2	-84	-183	-17	183	multi-exon	FALSE	canonical	3	476	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTGTTTAAGAAGCATCA	NA	False	NA	NA	False	ATTAAA	-14	NA	110434069	110431206	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_110431620_110433749
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071105	chr5	-	2589	3	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	-4308	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_2	277.5	24	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTGTCTTATTATTTAAG	NA	False	NA	-1	True	AATAAA	-28	NA	110585495	110577740	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_110580012_110580766_110580968_110585378
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071133	chr5	+	2554	15	FSM	ENSMUSG00000029504.6	ENSMUST00000031478.6	4846	15	0	2292	0	333	multi-exon	TRUE	canonical	3	94	junction_7	18.2382195693885	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCCGATAGCTCCAACACA	NA	False	NA	13	True	AATAAA	-24	NA	110801316	110806070	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_110801655_110801743_110801878_110802333_110802485_110802734_110802881_110802957_110803030_110803172_110803280_110803430_110803540_110803625_110803772_110803905_110804099_110804196_110804313_110804390_110804508_110804681_110804784_110804953_110805018_110805116_110805252_110805446
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071160	chr5	-	1833	6	FSM	ENSMUSG00000029507.17	ENSMUST00000031483.15	1814	6	-19	0	0	0	multi-exon	FALSE	canonical	3	282	junction_5	100.055184773204	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928481	110921532	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928105
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071169	chr5	-	1849	7	FSM	ENSMUSG00000029507.17	ENSMUST00000086643.12	1868	7	18	1	13	0	multi-exon	FALSE	canonical	3	62	junction_4	212.004454879818	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928444	110921533	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928105
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071213	chr5	+	2312	15	FSM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	-40	4	-19	-4	multi-exon	TRUE	canonical	3	120	junction_1	48.9833895211386	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTAGTTTGTTGTGGCT	9159	False	NA	27	True	AAAACA	-3	NA	110987825	111022007	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071218	chr5	+	2418	16	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	67.6591457232502	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGTAGTTTGTTGTGGC	9182	False	NA	26	True	AAAACA	-2	NA	110987848	111022006	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071238	chr5	+	2799	11	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-32	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	374.982999614649	561	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTGCTCCTGTGGTTG	NA	False	NA	18	True	AATAAA	-19	NA	111478596	111536227	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_111478700_111483360_111483392_111486148_111486299_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071262	chr5	+	687	1	Genic_Genomic	ENSMUSG00000050017.12	novel	NA	NA	NA	NA	-5	-51669	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGTTAAGTTAGCTGTCTA	NA	False	NA	NA	False	NA	NA	NA	111478623	111479310	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr5_+_111478600_111479300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071266	chr5	+	1834	7	FSM	ENSMUSG00000029344.16	ENSMUST00000031287.12	1835	7	-2	3	-2	3	multi-exon	FALSE	canonical	3	176	junction_1	59.7847992571876	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGAGTAGCTTTCTTCT	NA	False	NA	24	True	AATAAA	-34	NA	112424554	112463224	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_112424638_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071281	chr5	+	1853	7	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	-53	1	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	87.1615677284942	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGTGAGTAGCTTTCTT	NA	False	NA	22	True	AATAAA	-32	NA	112436574	112463222	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_112436679_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071299	chr5	-	1185	7	NIC	ENSMUSG00000029346.13	novel	1064	7	NA	NA	-4	2	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	36.3168923046379	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTTACAGTGCTGTTT	NA	False	NA	-5	True	AATAGA	-16	NA	112490910	112485255	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_112485608_112485867_112485914_112486183_112486434_112487584_112487684_112487762_112487990_112488961_112489003_112490740
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071360	chr5	-	3647	19	NIC	ENSMUSG00000018974.8	novel	4447	19	NA	NA	-16	2	combination_of_known_junctions	FALSE	canonical	3	34	junction_15	91.6478768621147	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGCATTGCAGCTGG	NA	False	NA	-14	True	ATTAAA	-18	NA	113909715	113880504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897388_113899155_113899341_113900889_113900995_113902133_113902261_113909381
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071362	chr5	-	3595	19	FSM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	854	-2	-18	2	multi-exon	FALSE	canonical	3	367	junction_17	27.7084133944819	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGCATTGCAGCTGG	NA	False	NA	-14	True	ATTAAA	-18	NA	113909717	113880504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897334_113899155_113899341_113900889_113900995_113902133_113902261_113909381
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071450	chr5	+	1953	7	NNC	ENSMUSG00000029591.15	novel	1985	7	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	274.280118370496	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCGGTGTGCCGACTATT	NA	False	NA	18	True	AATAAA	-14	NA	114268477	114277379	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_114268687_114269379_114269579_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071452	chr5	+	2647	6	FSM	ENSMUSG00000029591.15	ENSMUST00000102584.11	2136	6	-509	-2	31	0	multi-exon	FALSE	canonical	3	690	junction_3	32.487536071546	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGCCGACTATTCTTCA	NA	False	NA	23	True	AATAAA	-19	NA	114268477	114277384	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071466	chr5	+	1614	4	ISM	ENSMUSG00000042010.17	ENSMUST00000143276.2	6680	41	48499	1	-55	-1	3prime_fragment	FALSE	canonical	3	58	junction_1	12.0369800568452	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCTTCTGGCCTTGATTT	5505	False	NA	6	True	AATAAA	-16	NA	114386338	114388819	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_114386380_114386644_114386816_114386935_114387073_114387554
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071476	chr5	-	3111	7	FSM	ENSMUSG00000001098.16	ENSMUST00000102581.11	3103	7	-9	1	-9	-1	multi-exon	FALSE	canonical	3	95	junction_4	16.3401346383682	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCGCCTTCTGGTCTTTTC	NA	False	NA	1	True	AATAAA	-23	NA	114518578	114501628	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_114503928_114505269_114505466_114506402_114506456_114507001_114507089_114508119_114508290_114512956_114513171_114518486
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071492	chr5	+	4974	28	FSM	ENSMUSG00000029577.14	ENSMUST00000074002.12	5194	28	219	1	0	0	multi-exon	TRUE	canonical	3	241	junction_19	27.3486858419916	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTCTGTTCTGGTTTCTA	NA	False	NA	20	True	ATTAAA	-20	NA	114518886	114559229	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_114519037_114522375_114522464_114525154_114525340_114525441_114525563_114526783_114526844_114527125_114527231_114528450_114528548_114530158_114530245_114531137_114531221_114536468_114536575_114536822_114536944_114537850_114538029_114539328_114539499_114540582_114540751_114542600_114542773_114544232_114544352_114544806_114544922_114545604_114545705_114546157_114546278_114549079_114549257_114549364_114549476_114550226_114550365_114550482_114550549_114550911_114550971_114553262_114553446_114553637_114553750_114556598_114556692_114557538
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071509	chr5	+	1716	11	FSM	ENSMUSG00000041939.15	ENSMUST00000112239.9	1602	11	0	-114	0	0	multi-exon	FALSE	canonical	3	9	junction_3	36.3257484437692	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGCCCTGTGGGAAG	NA	False	NA	NA	False	AATAAA	-20	NA	114582346	114598652	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588301_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071531	chr5	-	202	1	Intergenic	novelGene_293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTAGTGGGTACAAAGTT	8104	False	NA	-22	True	NA	NA	NA	114845477	114845275	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_-_114845300_114845500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071566	chr5	-	687	5	ISM	ENSMUSG00000041890.18	ENSMUST00000153756.8	2091	12	-14	17217	-14	6	5prime_fragment	FALSE	canonical	3	229	junction_4	20.2036506602149	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTCCAGGTCTGCTCAG	NA	False	NA	NA	False	ATTAAA	-21	NA	114911570	114902596	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_-_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071568	chr5	+	3483	15	NNC	ENSMUSG00000041870.18	novel	3717	15	NA	NA	-31	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	108.429347823307	203	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTGAGTTTCATTTCT	1083	False	NA	28	True	AGTAAA	-18	NA	114912974	114943882	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_114913386_114924001_114924139_114924745_114924871_114927368_114927415_114929324_114929469_114930160_114930351_114933741_114933809_114934894_114934977_114935913_114935976_114936581_114936713_114937444_114937603_114938765_114938874_114939716_114939878_114941617_114941686_114942289
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071576	chr5	+	3452	15	NNC	ENSMUSG00000041870.18	novel	3717	15	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	138.047851065033	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTGAGTTTCATTTCT	1117	False	NA	28	True	AGTAAA	-18	NA	114913008	114943882	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_114913386_114924001_114924139_114924745_114924871_114927368_114927415_114929324_114929469_114930160_114930351_114933741_114933809_114934894_114934977_114935913_114935976_114936578_114936713_114937444_114937603_114938765_114938874_114939716_114939878_114941617_114941686_114942289
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071605	chr5	-	2781	10	NNC	ENSMUSG00000029556.13	novel	3191	10	NA	NA	-2233	0	at_least_one_novel_splicesite	TRUE	canonical	1	6	junction_9	4.34897462017354	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGAAGCTTCCTGACTGT	7925	False	NA	1	True	AGTAAA	-15	NA	115111386	115087038	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_115088245_115088752_115088898_115088984_115089104_115090637_115090830_115091385_115091588_115091697_115091847_115093308_115093551_115093874_115094062_115098074_115098275_115111247
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071622	chr5	-	1879	10	FSM	ENSMUSG00000029545.14	ENSMUST00000031524.11	1870	10	-8	-1	-8	1	multi-exon	FALSE	canonical	3	425	junction_3	13.7822573362984	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGCCTGTGTCTGTCTTC	9766	False	NA	-3	True	AATAAA	-19	NA	115257413	115248356	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115257283
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071632	chr5	-	1899	11	NNC	ENSMUSG00000029545.14	novel	1870	10	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	171.377244697188	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCTGTGTCTGTCTT	9800	False	NA	-4	True	AATAAA	-18	NA	115257379	115248357	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115256835_115256891_115257283
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071670	chr5	-	1084	6	NNC	ENSMUSG00000029544.17	novel	1621	6	NA	NA	-2676	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	79.358931444419	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	7480	False	NA	-1	True	AATAAA	-20	NA	115327043	115306747	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115326852
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071690	chr5	-	3117	17	FSM	ENSMUSG00000041740.17	ENSMUST00000112096.9	3112	17	-4	-1	-1	1	multi-exon	FALSE	canonical	3	1263	junction_14	135.987361545108	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCCTTCCCGACAAGCATA	NA	False	NA	-19	True	AATAAA	-21	NA	115410958	115379827	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640_115386775_115386973_115387230_115387455_115387582_115388028_115388190_115389124_115389262_115389335_115389521_115393408_115393500_115395032_115395233_115398177_115398375_115410315
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071702	chr5	-	3111	17	FSM	ENSMUSG00000041740.17	ENSMUST00000040555.15	3106	17	-7	2	-1	-2	multi-exon	FALSE	canonical	3	224	junction_1	338.888480689076	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCGCCTTCCCGACAAGC	NA	False	NA	-22	True	AATAAA	-18	NA	115410958	115379830	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_115380118_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640_115386775_115386973_115387230_115387455_115387582_115388028_115388190_115389124_115389262_115389335_115389521_115393408_115393500_115395032_115395233_115398177_115398375_115410315
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071728	chr5	-	835	2	FSM	ENSMUSG00000009013.6	ENSMUST00000112090.2	729	2	-22	-84	0	1	multi-exon	FALSE	canonical	3	3784	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTGCTAGTTTGTTCAA	NA	False	NA	0	True	AATAAA	-17	NA	115438993	115436479	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_115436893_115438571
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071731	chr5	-	701	3	NNC	ENSMUSG00000009013.6	novel	2030	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	367	junction_2	1708.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTGCTAGTTTGTTCA	NA	False	NA	-1	True	AATAAA	-16	NA	115438993	115436480	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_115436893_115438571_115438710_115438842
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071744	chr5	+	1069	2	FSM	ENSMUSG00000029535.5	ENSMUST00000031508.5	1088	2	3	16	3	-16	multi-exon	FALSE	canonical	3	209	junction_1	0	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTGCTCCCAAAACCCT	2417	False	NA	28	True	AATAAA	-20	NA	115479286	115481612	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_115479477_115480733
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071751	chr5	-	669	2	FSM	ENSMUSG00000041697.10	ENSMUST00000137766.2	620	2	-44	-5	23	5	multi-exon	FALSE	canonical	3	7302	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCGTGAGCTGGACGGT	4877	False	NA	-36	True	AATAAA	-16	NA	115487017	115483710	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_115483986_115486623
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071784	chr5	+	198	1	Intergenic	novelGene_294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTCAGGGGCTGGGGCTG	7301	False	NA	NA	False	NA	NA	NA	115639346	115639544	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_115639300_115639500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071789	chr5	+	3700	11	FSM	ENSMUSG00000029528.20	ENSMUST00000067268.15	3706	11	6	0	6	0	multi-exon	FALSE	canonical	3	245	junction_6	21.5722043379901	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATGTTATTTCTTGGGA	NA	False	NA	19	True	AATAAA	-23	NA	115644740	115694046	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_115644928_115682401_115682629_115682939_115683056_115683430_115683568_115683662_115683865_115684871_115685008_115689909_115690081_115690162_115690337_115690822_115690905_115691036_115691186_115691927
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071799	chr5	+	1295	7	NNC	ENSMUSG00000067274.11	novel	694	3	NA	NA	-2152	-92	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	8177.45098154404	221	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTGTTTTTTGAGACA	NA	False	NA	25	True	ATTAAA	-22	NA	115695373	115701694	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_115695476_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071807	chr5	+	1100	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	46	212	-24	-212	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697571	115701574	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071811	chr5	+	1347	6	NIC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-24	-212	intron_retention	FALSE	canonical	3	6763	junction_5	6890.1060833633	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697571	115701574	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071819	chr5	+	2461	22	ISM	ENSMUSG00000041638.19	ENSMUST00000064454.12	8555	58	11	31586	-7	3650	5prime_fragment	TRUE	canonical	3	352	junction_15	41.0233604154175	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCCAGAGATGTCTGAG	NA	False	NA	13	True	NA	NA	NA	115703323	115729127	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_115703366_115709467_115709571_115712637_115712702_115713223_115713356_115714178_115714288_115716950_115717050_115717134_115717270_115717693_115717763_115717845_115717955_115718563_115718639_115719061_115719191_115719548_115719600_115719839_115719939_115720322_115720497_115721456_115721610_115723864_115723958_115725847_115725924_115726034_115726195_115726992_115727183_115727259_115727385_115728303_115728483_115729032
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071835	chr5	+	2845	6	FSM	ENSMUSG00000029518.16	ENSMUST00000031492.15	2820	6	-25	0	-25	0	multi-exon	FALSE	canonical	3	206	junction_5	16.4438438328756	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTAGGGTCTGTCTGCTC	NA	False	NA	25	True	AATAAA	-21	NA	115769941	115785795	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_115770258_115775774_115775826_115778138_115778263_115781426_115781552_115781633_115781759_115783691
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071852	chr5	+	2163	11	NIC	ENSMUSG00000029516.20	novel	2335	10	NA	NA	-16	428	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	12.3971770980332	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAAACAGGTGACTCCCGA	8465	False	NA	NA	False	NA	NA	NA	115983320	116064196	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_115983361_115984342_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071861	chr5	-	2007	8	FSM	ENSMUSG00000029513.15	ENSMUST00000111999.8	2026	8	23	-4	23	0	multi-exon	FALSE	canonical	3	151	junction_7	27.0313499024932	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGACTCGGCACATTTT	NA	False	NA	0	True	AATAAA	-25	NA	116162544	116151644	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149_116162319_116162423
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071872	chr5	-	1954	3	FSM	ENSMUSG00000041548.5	ENSMUST00000036991.5	1816	3	-138	0	-138	0	multi-exon	FALSE	canonical	3	315	junction_2	24.5	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCTTCATTTAGCGA	NA	False	NA	0	True	AATAAA	-20	NA	116561061	116546549	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_116547550_116553465_116553530_116560171
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071909	chr5	+	3142	21	FSM	ENSMUSG00000061288.14	ENSMUST00000111978.8	4467	21	-3	1328	-3	22	multi-exon	TRUE	canonical	0	0	junction_10	2.74727137356323	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGACCCTGCGAAACTAC	1383	False	NA	43	True	NA	NA	NA	117258190	117411954	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_117258405_117323591_117323677_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629_117401870_117403965_117404179_117410161_117410345_117411737
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071925	chr5	-	1240	4	NNC	ENSMUSG00000032959.13	novel	1240	4	NA	NA	7	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1275.14783456664	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCGGGTATTTCCTTCCT	NA	False	NA	-14	True	AATAAA	-18	NA	117425683	117420715	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_117421531_117423785_117423887_117424195_117424310_117425473
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071945	chr5	-	2497	11	FSM	ENSMUSG00000029363.15	ENSMUST00000086461.13	2796	11	-2	301	-2	1	multi-exon	TRUE	canonical	3	1613	junction_7	125.046431376509	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTGTGTGAGGCGTCTT	NA	False	NA	NA	False	AATATA	-17	NA	117527114	117516468	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071958	chr5	+	2751	3	ISM	ENSMUSG00000029361.19	ENSMUST00000102557.10	4591	29	82457	-2262	30396	1807	3prime_fragment	FALSE	canonical	3	46	junction_1	6.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAGCAAGGTGGCCATCTG	NA	False	NA	NA	False	NA	NA	NA	118087635	118094236	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_118087894_118090829_118090949_118091862
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000071966	chr5	+	3902	12	FSM	ENSMUSG00000032898.10	ENSMUST00000035579.10	3883	12	-18	-1	-8	0	multi-exon	FALSE	canonical	3	306	junction_9	49.846707161818	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGTGACCTGCCCGCTT	NA	False	NA	11	True	AATAAA	-22	NA	118114830	118148266	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163_118124286_118126842_118126990_118127188_118127326_118128867_118129005_118132546_118132727_118133434_118133568_118138402_118138594_118140079_118140238_118146074
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072002	chr5	+	204	1	Intergenic	novelGene_295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACACTGGCTGCTCTTGCA	NA	False	NA	NA	False	NA	NA	NA	118581111	118581315	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_118581100_118581300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072007	chr5	+	1407	1	ISM	ENSMUSG00000018076.13	ENSMUST00000100816.8	9296	31	203313	0	13645	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGAGTGGCTCTTTTCCC	NA	False	NA	30	True	AATAAA	-18	NA	118902096	118903503	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_118902100_118903500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072021	chr5	+	2700	1	FSM	ENSMUSG00000018604.19	ENSMUST00000202034.2	2995	1	318	-23	-31	23	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAAGAATCCATCCCTCT	NA	False	NA	NA	False	AATACA	-30	NA	119809051	119811751	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_119809100_119811800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072027	chr5	+	4801	7	FSM	ENSMUSG00000018604.19	ENSMUST00000079719.11	4982	7	345	-164	-4	1	multi-exon	FALSE	canonical	3	458	junction_2	196.719272625288	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGAAGTTGTGGTAATGA	NA	False	NA	23	True	AATAAA	-17	NA	119809078	119822790	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_119810470_119812090_119812359_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072037	chr5	+	4687	7	NNC	ENSMUSG00000018604.19	novel	4856	8	NA	NA	0	61	intron_retention	FALSE	canonical	0	0	junction_4	367.081015883718	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGAAGGAGTATTTTGT	NA	False	NA	-80	True	NA	NA	NA	119809082	119822687	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_119810470_119812090_119812359_119813622_119813770_119815565_119815643_119816752_119816898_119818459_119819131_119820695
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072065	chr5	+	450	1	ISM	ENSMUSG00000018604.19	ENSMUST00000121021.8	4777	8	13413	0	4026	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	22	True	AATAAA	-16	NA	119822339	119822789	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_119822300_119822800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072068	chr5	+	3994	24	FSM	ENSMUSG00000029594.13	ENSMUST00000031590.12	4010	24	16	0	16	0	multi-exon	FALSE	canonical	3	93	junction_16	11.5488606136917	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGATGTCACTCTGTCAC	NA	False	NA	21	True	AATAAA	-31	NA	120254545	120337046	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_120254715_120256724_120256908_120257696_120257817_120257959_120257996_120258161_120258367_120260957_120261215_120262215_120262297_120262758_120262838_120264238_120264311_120265029_120265231_120266248_120266380_120268774_120268894_120269218_120269316_120270198_120270310_120270906_120271108_120271825_120271947_120278268_120278439_120278601_120278663_120279615_120279696_120281441_120281498_120282061_120282179_120313923_120314030_120324282_120324404_120335946
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072088	chr5	+	2907	16	NIC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	4	6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	54.5084702897938	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCCCACAGGGTCTCGTC	0	True	NA	12	True	AATAAA	-28	NA	120649236	120672095	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658838_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072090	chr5	+	2574	13	NIC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	4	6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	57.0079794609686	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCCCACAGGGTCTCGTC	0	True	NA	12	True	AATAAA	-28	NA	120649236	120672095	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658838_120658952_120659032_120659201_120659818_120659927_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072105	chr5	+	2476	12	NIC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	-37	6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	59.5266451902281	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCCCACAGGGTCTCGTC	1829	False	NA	12	True	AATAAA	-28	NA	120651170	120672095	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658838_120658952_120659032_120659201_120659818_120659927_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072118	chr5	-	2443	4	FSM	ENSMUSG00000029600.11	ENSMUST00000177800.8	1668	4	-775	0	-775	0	multi-exon	FALSE	canonical	2	9	junction_3	33.2365260920372	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTAGTGTGTTACTTTTT	5540	False	NA	NA	False	ATTAAA	-20	NA	120751429	120747122	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_120748028_120749442_120749795_120750044_120750140_120750338
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072139	chr5	+	2975	20	NNC	ENSMUSG00000029599.14	novel	4322	20	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_12	124.927059050882	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGGAGTGTGGCTTCCT	NA	False	NA	27	True	AATAAA	-18	NA	120751179	120765692	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_120751372_120755023_120755154_120756204_120756276_120756664_120756854_120756940_120756991_120757669_120757712_120757828_120757925_120758322_120758445_120758536_120758599_120758691_120758824_120759679_120759891_120761245_120761381_120761642_120761874_120761956_120762031_120762602_120762795_120763766_120763910_120763990_120764105_120764465_120764571_120764898_120765015_120765124
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072152	chr5	-	185	1	Intergenic	novelGene_296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAATCAAATAATAATAATA	385	False	NA	NA	False	NA	NA	NA	120777261	120777076	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_-_120777100_120777300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072215	chr5	+	3159	24	FSM	ENSMUSG00000042719.18	ENSMUST00000042163.15	5447	24	23	2265	23	213	multi-exon	FALSE	canonical	3	302	junction_8	45.1361728780741	386	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGACCCTCATCTGGGTT	NA	False	NA	34	True	ATTAAA	-39	NA	121536021	121578207	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072233	chr5	-	1292	3	FSM	ENSMUSG00000029616.10	ENSMUST00000130451.2	5204	3	-15	3927	-15	5	multi-exon	FALSE	canonical	3	820	junction_1	20.5	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTTCTTTTTAGATAAT	3197	False	NA	-36	True	AATAAA	-19	NA	121590584	121582813	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_121583636_121585203_121585343_121590253
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072255	chr5	-	1959	13	NNC	ENSMUSG00000029455.15	novel	3867	13	NA	NA	-11	174	at_least_one_novel_splicesite	TRUE	canonical	2	9	junction_7	199.595197977195	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGGGTCAGTTCTCTAAG	NA	False	NA	-24	True	AATAAA	-18	NA	121731656	121705766	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_121706087_121706988_121707104_121708666_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713264_121713954_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072260	chr5	-	1946	13	NNC	ENSMUSG00000029455.15	novel	3867	13	NA	NA	-4	172	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	201.795206968737	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACGGGGTCAGTTCTCTA	NA	False	NA	-26	True	AATAAA	-16	NA	121731649	121705768	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_121706087_121706988_121707104_121708666_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713264_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072359	chr5	+	2620	8	FSM	ENSMUSG00000064267.14	ENSMUST00000072602.14	2790	8	146	24	-34	-24	multi-exon	FALSE	canonical	3	30	junction_1	20.2887321698825	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTCATGGGGCTTTC	NA	False	NA	4	True	AATAAA	-15	NA	122347937	122380336	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_122347985_122348404_122348456_122354294_122354427_122371482_122371756_122375743_122375849_122376468_122376701_122378276_122378390_122378669
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072365	chr5	+	1019	4	FSM	ENSMUSG00000029462.19	ENSMUST00000155671.8	2716	4	14	1683	-2	15	multi-exon	FALSE	canonical	3	1453	junction_1	367.656844837078	419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTGTTTAATTTAAAAAC	693	False	NA	32	True	AATAAA	-32	NA	122492445	122501364	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_122492540_122498075_122498268_122500098_122500335_122500867
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072387	chr5	+	2291	11	FSM	ENSMUSG00000029466.12	ENSMUST00000031422.10	2751	11	0	460	0	-460	multi-exon	FALSE	canonical	3	226	junction_7	29.6310647800581	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTTGAGACTCTTCCT	NA	False	NA	28	True	AATAAA	-24	NA	122560506	122582515	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352_122579504_122581866
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072399	chr5	-	4538	19	NNC	ENSMUSG00000029467.16	novel	4486	20	NA	NA	-50	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	388.743925362407	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGTTCTTAATG	7227	False	NA	-16	True	AATAAA	-25	NA	122640338	122594390	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599921_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122639626
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072401	chr5	-	4556	20	NNC	ENSMUSG00000029467.16	novel	4486	20	NA	NA	-50	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	377.935022042714	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGTTCTTAATG	7227	False	NA	-16	True	AATAAA	-25	NA	122640338	122594390	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599921_122600049_122604008_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072427	chr5	+	1987	12	FSM	ENSMUSG00000029470.16	ENSMUST00000031429.14	2702	12	23	692	-2	2	multi-exon	FALSE	canonical	3	87	junction_5	9.63207451716048	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTCTGTGCTGCCTCC	NA	False	NA	17	True	ATTAAA	-22	NA	122845629	122867109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072437	chr5	-	2046	13	ISM	ENSMUSG00000029471.14	ENSMUST00000199830.5	3139	14	2	2732	2	-2732	5prime_fragment	TRUE	canonical	3	28	junction_4	15.8190725251374	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTGGAATGTCACTCAGT	4635	False	NA	-22	True	AATAAA	-16	NA	122917460	122881413	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_-_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072444	chr5	-	2468	17	FSM	ENSMUSG00000029472.14	ENSMUST00000086216.9	2760	17	32	260	-13	2	multi-exon	TRUE	canonical	3	1165	junction_8	284.126264845403	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGTTTTTTTTTATTTTT	NA	False	NA	-15	True	AATAAA	-24	NA	122959370	122925781	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072446	chr5	-	2429	17	FSM	ENSMUSG00000029472.14	ENSMUST00000200645.5	2404	17	-13	-12	-13	2	multi-exon	FALSE	canonical	3	855	junction_8	345.39967790952	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGTTTTTTTTTATTTTT	NA	False	NA	-15	True	AATAAA	-24	NA	122959370	122925781	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072461	chr5	-	2310	6	NIC	ENSMUSG00000029472.14	novel	2422	17	NA	NA	0	3	intron_retention	FALSE	canonical	3	1753	junction_1	207.934027999267	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATTTTATTTTTAAAATAG	NA	False	NA	NA	False	AAGAAA	-9	NA	122959350	122943903	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072468	chr5	+	2004	6	FSM	ENSMUSG00000029474.8	ENSMUST00000031434.8	4440	6	91	2345	-18	-2345	multi-exon	FALSE	canonical	3	187	junction_1	16.3389106124001	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTAGTTTAATATTGTTT	605	False	NA	10	True	AATAAA	-17	NA	122988201	123007009	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_122988362_122999751_122999971_123002049_123002458_123004864_123004970_123005182_123005385_123006099
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072477	chr5	-	3652	13	NIC	ENSMUSG00000029475.18	novel	5180	23	NA	NA	-37	0	intron_retention	FALSE	canonical	3	58	junction_12	99.7441170640599	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACACTGTGTTTGAGGGT	NA	False	NA	NA	False	TATAAA	-21	NA	123060207	123008730	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123059967
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072479	chr5	-	3551	12	FSM	ENSMUSG00000029475.18	ENSMUST00000031435.14	3532	12	-19	0	-19	0	multi-exon	FALSE	canonical	3	252	junction_11	40.2726246663991	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACACTGTGTTTGAGGGT	8575	False	NA	NA	False	TATAAA	-21	NA	123038437	123008730	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123038211
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072502	chr5	+	2621	12	FSM	ENSMUSG00000054434.15	ENSMUST00000067505.15	2164	12	6	-463	6	463	multi-exon	FALSE	canonical	3	93	junction_3	11.7768508046945	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCGGCCACATGTGGC	NA	False	NA	NA	False	NA	NA	NA	123214343	123256275	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_123214559_123236237_123236357_123237899_123238017_123239687_123239748_123240316_123240413_123242484_123242575_123252164_123252231_123252630_123252693_123253162_123253256_123253723_123253789_123254264_123254334_123254706
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072516	chr5	+	2463	7	NNC	ENSMUSG00000029438.10	novel	4718	6	NA	NA	16	-1201	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	11.1567119807864	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGAAAAATCGTAATGTT	NA	False	NA	NA	False	NA	NA	NA	123482526	123510944	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_123482561_123482688_123482785_123489929_123490012_123494003_123494101_123499253_123499422_123507395_123507518_123509080
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072525	chr5	-	2614	4	FSM	ENSMUSG00000029433.17	ENSMUST00000145152.8	2588	4	-22	-4	-15	4	multi-exon	FALSE	canonical	3	603	junction_1	60.8659729788875	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGACTAAAGGTTTGAGA	8940	False	NA	NA	False	NA	NA	NA	123662221	123653861	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_123656129_123658103_123658236_123661317_123661445_123662133
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072544	chr5	+	195	1	Intergenic	novelGene_297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGCATATCGATCGCAGC	161	False	NA	NA	False	NA	NA	NA	123809802	123809997	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_123809800_123810000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072556	chr5	+	680	2	FSM	ENSMUSG00000029414.12	ENSMUST00000199838.2	347	2	10	-343	0	343	multi-exon	FALSE	canonical	3	399	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTACCTGCTGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	123887788	123892466	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_123887888_123891885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072561	chr5	+	2245	8	FSM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	71	23	-23	-23	multi-exon	FALSE	canonical	3	1477	junction_4	100.760982082372	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAGTGAAGTTAAAAATG	9049	False	NA	NA	False	NA	NA	NA	124045308	124066875	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072572	chr5	-	2548	4	FSM	ENSMUSG00000066278.7	ENSMUST00000040967.9	2522	4	-25	-1	-25	1	multi-exon	FALSE	canonical	3	122	junction_3	15.8394724940223	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGTGTTTCTCTCATT	2211	False	NA	0	True	AATAAA	-21	NA	124170358	124142702	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_124144802_124145671_124145755_124148750_124148923_124170164
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072584	chr5	+	1216	5	FSM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	-23	-1	-13	1	multi-exon	FALSE	canonical	3	507	junction_1	46.874833333037	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTGTGTTGCATTTT	NA	False	NA	25	True	ATTAAA	-18	NA	124254138	124256260	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072660	chr5	+	195	1	Intergenic	novelGene_298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTATAGCACCATGCCCA	NA	False	NA	NA	False	NA	NA	NA	124677684	124677879	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_124677700_124677900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072687	chr5	-	1777	9	NIC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	-2	-440	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	291.131172111473	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACGGTATTGCCTCTCTA	NA	False	NA	-5	True	AATAAA	-17	NA	124717097	124708715	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712656_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124716766
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072715	chr5	+	3534	20	NNC	ENSMUSG00000038023.13	novel	5345	20	NA	NA	3	510	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_9	41.2109632295183	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTTCAGGTTAGCTGAAA	NA	False	NA	30	True	AATAAA	-28	NA	124767119	124799713	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_124767356_124770817_124770897_124773952_124774051_124775423_124775562_124777132_124777222_124779407_124779535_124782904_124782988_124783884_124783979_124784543_124784757_124789274_124789424_124789764_124789902_124790144_124790333_124790431_124790523_124791177_124791297_124793368_124793580_124794949_124795070_124795502_124795623_124796112_124796231_124796914_124797087_124798761
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072731	chr5	+	4085	4	FSM	ENSMUSG00000079215.9	ENSMUST00000111417.9	4092	4	7	0	7	0	multi-exon	FALSE	canonical	3	206	junction_3	10.2089285540757	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATGTTTCCTGTGTGGT	NA	False	NA	8	True	NA	NA	NA	124939761	124965694	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_124939947_124940417_124940573_124961771_124961837_124962014
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072747	chr5	-	1103	4	ISM	ENSMUSG00000037936.16	ENSMUST00000111390.8	2367	12	53588	-2	-806	0	3prime_fragment	FALSE	canonical	3	487	junction_1	96.6413760019773	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTTCTGTGACTGTT	NA	False	NA	-1	True	AATAAA	-21	NA	125364547	125354150	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_-_125354930_125360962_125361110_125361744_125361797_125364422
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072772	chr5	+	3247	18	FSM	ENSMUSG00000029482.5	ENSMUST00000031445.5	3239	18	-5	-3	-5	3	multi-exon	FALSE	canonical	3	83	junction_4	14.7470013373196	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGCGTGTGTTTCTCTGA	NA	False	NA	13	True	AATAAA	-30	NA	125552872	125594477	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_125553174_125559893_125559998_125561600_125561722_125566846_125566961_125571970_125572069_125580246_125580362_125580612_125580695_125583212_125583361_125585740_125585822_125586842_125586968_125588703_125588769_125588909_125589033_125589688_125589803_125590165_125590292_125590982_125591053_125591232_125591292_125591991_125592195_125593279
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072786	chr5	-	2680	8	FSM	ENSMUSG00000029416.18	ENSMUST00000153832.8	2673	8	-4	-3	-4	0	multi-exon	FALSE	canonical	3	33	junction_6	28.9418840620514	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGAGCTTCCTGATGGTT	NA	False	NA	-5	True	TATAAA	-18	NA	127694486	127672727	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_127673837_127677483_127677643_127678921_127679078_127680756_127680926_127681174_127681253_127681601_127681713_127685835_127686126_127693878
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072835	chr5	+	328	1	ISM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	2770	1157	2567	-1157	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	3112	False	NA	NA	False	AATAAA	-23	NA	129099902	129100230	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_129099900_129100200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072840	chr5	+	3199	12	ISM	ENSMUSG00000044017.17	ENSMUST00000056617.14	5163	26	65843	-5	65836	5	3prime_fragment	FALSE	canonical	3	43	junction_2	8.40306909693916	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAGCGTCACAATCTG	4620	False	NA	34	True	AATAAA	-22	NA	129239656	129281668	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_129239733_129248869_129248994_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072841	chr5	+	3070	11	NIC	ENSMUSG00000044017.17	novel	5163	26	NA	NA	65836	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	16.6180624622728	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGTCTTGAGCGTCACA	4620	False	NA	29	True	AATAAA	-17	NA	129239656	129281663	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_129239733_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072848	chr5	+	3216	18	NIC	ENSMUSG00000029439.15	novel	3313	18	NA	NA	8	-2	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	23.627296395231	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCAGCCTGGGGCTCTCCT	NA	False	NA	11	True	AATAAA	-24	NA	129578292	129648443	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620360_129626517_129626749_129627760_129627952_129631506_129631773_129637743_129637870_129646704_129646879_129647539_129647613_129648065
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072867	chr5	+	3399	1	FSM	ENSMUSG00000029439.15	ENSMUST00000199887.2	3398	1	-1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAAAAATATTTGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	129578308	129581707	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_129578300_129581700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072871	chr5	+	3539	10	FSM	ENSMUSG00000029436.10	ENSMUST00000031390.10	6422	10	-5	2888	-5	-2888	multi-exon	TRUE	canonical	3	158	junction_6	22.9879195327556	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTTGACAGCTCAGTGGT	NA	False	NA	11	True	AATAAA	-17	NA	129661227	129685275	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_129661513_129671607_129671741_129672017_129672148_129672468_129672753_129673625_129673803_129675722_129675823_129678996_129679080_129679165_129679319_129682578_129682837_129683339
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072921	chr5	+	2300	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	345	-57	345	57	multi-exon	TRUE	canonical	3	3618	junction_3	465.957308149311	1159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGCTGGAAGGTCAGAAC	NA	False	NA	2	True	AATAAA	-16	NA	129864406	129875269	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072938	chr5	+	1652	9	NNC	ENSMUSG00000025538.16	novel	2264	9	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	158.002373399895	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATTTATTTATTATAT	NA	False	NA	18	True	AATAAA	-18	NA	129875826	129892275	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_129875932_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072957	chr5	-	731	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	181	3	-16	0	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTAGCGTCCTTAT	2245	False	NA	-6	True	AATAAA	-15	NA	129916130	129909999	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072959	chr5	+	2479	4	FSM	ENSMUSG00000034173.14	ENSMUST00000041466.14	2492	4	13	0	13	0	multi-exon	FALSE	canonical	3	34	junction_3	2120.04764097414	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTGTCTCAAAAAAAATTT	6018	False	NA	NA	False	AATAAA	-17	NA	129924576	129932464	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_129924694_129928023_129928274_129929185_129929337_129930503
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072972	chr5	+	3037	3	FSM	ENSMUSG00000066735.9	ENSMUST00000051758.11	3112	3	75	0	-64	0	multi-exon	FALSE	canonical	3	775	junction_1	60.5	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGTGTTTTATTTGG	NA	False	NA	44	True	AATATA	-17	NA	129970885	130013587	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_129971207_130007359_130007470_130010981
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000072981	chr5	-	2502	12	NNC	ENSMUSG00000025534.18	novel	2687	12	NA	NA	-2	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	36.532562176414	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTCTTTCGTTACTATC	NA	False	NA	NA	False	NA	NA	NA	130031708	130017851	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029201_130029384_130029600_130029784_130031447
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073018	chr5	+	2645	9	FSM	ENSMUSG00000025340.15	ENSMUST00000119797.8	2690	9	40	5	14	0	multi-exon	FALSE	canonical	3	81	junction_3	33.6962535009458	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGATTGGTTTTGTTTTGT	NA	False	NA	16	True	AATAAA	-38	NA	130200678	130243178	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_130200736_130216241_130216428_130219717_130219885_130226790_130226958_130235849_130235932_130237526_130237660_130239264_130239357_130240702_130240960_130241674
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073023	chr5	+	350	1	FSM	ENSMUSG00000080893.2	ENSMUST00000118998.2	402	1	160	-108	160	108	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATATCTAATTGAGAGGC	3651	False	NA	NA	False	ATTAAA	-30	NA	130217395	130217745	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_130217400_130217700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073044	chr5	-	1550	5	FSM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	-2	0	-2	0	multi-exon	FALSE	canonical	3	697	junction_4	74.8765650921568	295	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	False	NA	0	True	AATAAA	-17	NA	130284373	130274571	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073075	chr5	+	216	1	Intergenic	novelGene_299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGGTGTATCTCAGGAA	NA	False	NA	NA	False	NA	NA	NA	131974865	131975081	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_131974900_131975100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073077	chr5	+	566	1	FSM	ENSMUSG00000058905.6	ENSMUST00000145209.2	414	1	-43	-109	-43	109	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCCCAGCAGGCAGGAAT	NA	False	NA	NA	False	NA	NA	NA	133503918	133504484	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_133503900_133504500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073085	chr5	-	2326	11	FSM	ENSMUSG00000061979.9	ENSMUST00000076228.3	2321	11	-5	0	-5	0	multi-exon	FALSE	canonical	3	313	junction_2	26.6850145212627	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACTTGATCATTTCTT	NA	False	NA	4	True	AATAAA	-42	NA	134205618	134176892	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_134177846_134182962_134183049_134184578_134184753_134186429_134186518_134192462_134192645_134194177_134194263_134195503_134195556_134197050_134197118_134198056_134198186_134200685_134200816_134205238
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073138	chr5	+	1934	11	FSM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	47	3014	-20	463	multi-exon	FALSE	canonical	3	1115	junction_7	96.2091991443646	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTTTTGTTGTTGTTTT	NA	False	NA	NA	False	TTTAAA	-20	NA	134611590	134627645	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073302	chr5	+	4225	4	FSM	ENSMUSG00000039917.11	ENSMUST00000043707.7	4207	4	65	-83	-21	11	multi-exon	FALSE	canonical	3	209	junction_1	25.703436864876	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCATGGCCTTGTGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	135661536	135675313	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_135661773_135664848_135665257_135667943_135668095_135671883
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073340	chr5	+	1300	9	FSM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	156	0	0	0	multi-exon	FALSE	canonical	3	4657	junction_8	277.596267085853	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	609	False	NA	38	True	AGTAAA	-25	NA	135807489	135819245	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073342	chr5	+	1283	9	NNC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1679.44328573489	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	628	False	NA	38	True	AGTAAA	-25	NA	135807508	135819245	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_135807656_135812158_135812328_135813037_135813124_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073388	chr5	+	202	1	Intergenic	novelGene_300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTTGAGCTGGGCATG	NA	False	NA	NA	False	NA	NA	NA	136079510	136079712	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_136079500_136079700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073392	chr5	+	2901	21	FSM	ENSMUSG00000004952.14	ENSMUST00000042135.14	2914	21	13	0	13	0	multi-exon	TRUE	canonical	3	36	junction_7	10.6273232754067	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGAGGTGTTGGGTTGGG	2165	False	NA	NA	False	AATAAA	-20	NA	136112782	136140714	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130249_136130478_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073397	chr5	+	3112	20	FSM	ENSMUSG00000004952.14	ENSMUST00000135344.8	3057	20	-54	-1	-10	1	multi-exon	FALSE	canonical	3	36	junction_7	10.66669552166	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATGCTGAGGTGTTGGGT	2180	False	NA	NA	False	AATAAA	-16	NA	136112797	136140710	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073427	chr5	+	1789	3	FSM	ENSMUSG00000039754.11	ENSMUST00000041100.4	1773	3	-13	-3	-5	0	multi-exon	FALSE	canonical	3	62	junction_2	0.5	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTCTCCTTTTCCCAT	NA	False	NA	NA	False	AATAAA	-26	NA	136164994	136170469	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_136165149_136168191_136168390_136169032
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073463	chr5	-	2372	11	NNC	ENSMUSG00000004415.16	novel	2724	13	NA	NA	-9702	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_10	9.19565114605812	28	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTCTGTGGCTTGTCAG	937	False	NA	0	True	AATAAA	-19	NA	136811602	136770612	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_136772061_136773016_136773102_136775874_136775923_136777177_136777214_136778118_136778172_136780522_136780607_136783046_136783200_136783768_136783868_136786485_136786643_136794155_136794218_136811455
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073482	chr5	+	1904	1	Intergenic	novelGene_301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTCTGTTAACTCTAGC	2025	False	NA	NA	False	AAAAAG	-5	NA	136969960	136971864	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_136970000_136971900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073487	chr5	+	816	4	FSM	ENSMUSG00000019054.14	ENSMUST00000111097.8	601	4	-130	-85	1	0	multi-exon	FALSE	canonical	3	58	junction_1	234.963827003222	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGTGTGAGCGAGCA	4052	False	NA	20	True	AATAAA	-21	NA	136982129	136995088	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_136982445_136993946_136994024_136994418_136994525_136994770
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073526	chr5	-	1323	5	FSM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	30	0	30	0	multi-exon	FALSE	canonical	3	639	junction_4	57.0586321252096	333	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTTGGCTTTGTTGG	NA	False	NA	1	True	AATAAA	-25	NA	137074959	137063846	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917_137072097_137074861
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073575	chr5	+	4185	27	Fusion	ENSMUSG00000106237.2_ENSMUSG00000029714.12	novel	5440	24	NA	NA	182	-1799	multi-exon	TRUE	canonical	0	0	junction_23	18.3778552102844	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACACTGTTATTTTTGGCC	NA	False	NA	106	True	NA	NA	NA	137508696	137524398	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr5_+_137508883_137515646_137515874_137516743_137516875_137517139_137517249_137517344_137517475_137517571_137517668_137517767_137517880_137517998_137518108_137518289_137518331_137518473_137518639_137518808_137519063_137519146_137519265_137520109_137520245_137520384_137520486_137520639_137520812_137520922_137521090_137521216_137521318_137521398_137521519_137521663_137521765_137522060_137522144_137522223_137522371_137522450_137522676_137522912_137523104_137523192_137523354_137523433_137523622_137523691_137523822_137523913
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073587	chr5	-	1656	10	FSM	ENSMUSG00000029713.16	ENSMUST00000031726.15	1860	10	204	0	-5	0	multi-exon	FALSE	canonical	3	634	junction_9	47.0030206541801	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTCTCCTTGCTTACTG	1736	False	NA	-5	True	CATAAA	-22	NA	137531568	137526388	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_137526872_137526952_137527170_137527265_137527468_137527704_137527772_137527864_137528028_137528107_137528172_137528445_137528553_137528659_137528699_137528956_137529103_137531400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073625	chr5	-	2899	12	FSM	ENSMUSG00000029722.16	ENSMUST00000031736.16	2893	12	-6	0	-6	0	multi-exon	FALSE	canonical	3	93	junction_6	17.5678142969908	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGAGTGTCTTGTTTTG	1758	False	NA	NA	False	NA	NA	NA	137682994	137648724	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137659625_137659755_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073633	chr5	+	2598	5	FSM	ENSMUSG00000029723.17	ENSMUST00000100539.10	3983	5	-270	1655	-4	205	multi-exon	FALSE	canonical	3	319	junction_1	32.7595405950694	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTTGGTGTGCTGTTGCT	NA	False	NA	17	True	ATTAAA	-28	NA	137743987	137758015	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_137744677_137745109_137746122_137749469_137749631_137756945_137756995_137757328
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073648	chr5	+	973	4	FSM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	-17	0	-17	0	multi-exon	FALSE	canonical	3	301	junction_1	53.8970211504206	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777148	137778372	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_137777484_137777563_137777808_137777887_137778025_137778115
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073655	chr5	+	1197	1	NIC	ENSMUSG00000029725.11	novel	956	4	NA	NA	10	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777175	137778372	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_137777200_137778400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073674	chr5	+	2153	4	FSM	ENSMUSG00000037017.16	ENSMUST00000080732.10	2134	4	-19	0	2	0	multi-exon	FALSE	canonical	3	30	junction_1	59.1626759217517	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCGTCTCAGGACTGTT	NA	False	NA	4	True	AATAAA	-13	NA	138115179	138132476	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_138115251_138123239_138123953_138124715_138124909_138131300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073683	chr5	+	2227	5	FSM	ENSMUSG00000037017.16	ENSMUST00000062350.15	2252	5	26	-1	-8	0	multi-exon	FALSE	canonical	3	41	junction_1	46.7566840141599	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCGTCTCAGGACTGTT	NA	False	NA	4	True	AATAAA	-13	NA	138115190	138132476	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_138115251_138116097_138116183_138123239_138123953_138124715_138124909_138131300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073687	chr5	+	2248	5	FSM	ENSMUSG00000037017.16	ENSMUST00000110961.9	2310	5	13	49	-8	0	multi-exon	FALSE	canonical	3	61	junction_1	38.7774096607806	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCGTCTCAGGACTGTTAT	NA	False	NA	6	True	AATAAA	-15	NA	138115190	138132478	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_138115270_138116097_138116183_138123239_138123953_138124715_138124909_138131300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073688	chr5	+	2163	4	FSM	ENSMUSG00000037017.16	ENSMUST00000110960.9	2204	4	-8	49	-8	0	multi-exon	FALSE	canonical	3	48	junction_1	50.6776303927307	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCGTCTCAGGACTGTTAT	NA	False	NA	6	True	AATAAA	-15	NA	138115190	138132478	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_138115270_138123239_138123953_138124715_138124909_138131300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073715	chr5	-	2449	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	512	1	-92	-1	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTAGAGTTTTTAGTAT	2228	False	NA	-9	True	AATAAA	-31	NA	138170172	138162845	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073737	chr5	-	2318	15	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_14	565.543210063546	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2881	False	NA	-25	True	AATAAA	-15	NA	138169519	138162861	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169449
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073748	chr5	+	3462	15	FSM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	14	3	11	-3	multi-exon	TRUE	canonical	3	48	junction_6	9.89356624586021	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTATGGTGGTGCATTCCT	8091	False	NA	15	True	NA	NA	NA	138170277	138178688	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073779	chr5	-	2407	15	NNC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_14	167.30713843536	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	1956	False	NA	-4	True	AATAAA	-18	NA	138185484	138176878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185324
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073847	chr5	+	4219	34	NNC	ENSMUSG00000036928.15	novel	4211	34	NA	NA	-3	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_21	28.7312361413706	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGACTTGAGATTGTCAT	NA	False	NA	21	True	AATAAA	-21	NA	138278784	138310656	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_138278917_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298478_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073856	chr5	-	2327	1	FSM	ENSMUSG00000080935.4	ENSMUST00000121655.2	1293	1	-56	-978	-56	978	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTACTATAGAGCCAGAAAAA	1739	False	NA	NA	False	AATAAA	-2	NA	138363870	138361543	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_138361500_138363900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073858	chr5	+	3270	5	NIC	ENSMUSG00000036898.17	novel	886	5	NA	NA	0	-2031	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	27.6167974247558	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGAATGACGGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	138439740	138456925	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_138439892_138443013_138443141_138445776_138445870_138453241_138453356_138454140
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073920	chr5	+	2179	6	FSM	ENSMUSG00000036817.15	ENSMUST00000142473.8	2168	6	0	-11	0	10	multi-exon	FALSE	canonical	3	597	junction_1	167.541039748475	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTTCTAGCTGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	139186421	139214105	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073958	chr5	+	2138	8	NIC	ENSMUSG00000025858.13	novel	2107	9	NA	NA	5	0	intron_retention	FALSE	canonical	3	1098	junction_7	56.9679465908287	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTAGTCCTTTCTG	NA	False	NA	NA	False	AATAAA	-15	NA	139238129	139255806	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr5_+_139238375_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139253058_139253157_139253231_139254735
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073976	chr5	-	1475	5	FSM	ENSMUSG00000053553.12	ENSMUST00000066052.12	1429	5	-43	-3	-18	3	multi-exon	FALSE	canonical	3	675	junction_4	25.951878544722	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTTTTTGCCTGTCTAA	NA	False	NA	-3	True	NA	NA	NA	139446300	139345490	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_139346486_139347061_139347144_139349727_139349919_139441171_139441302_139446223
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073983	chr5	-	3097	7	FSM	ENSMUSG00000053581.14	ENSMUST00000079996.13	3169	7	67	5	-18	0	multi-exon	FALSE	canonical	3	27	junction_6	14.7271480229163	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATTCTAGACAGTTT	8744	False	NA	-11	True	AATAAA	-19	NA	139470237	139456970	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470020
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000073993	chr5	-	199	2	Intergenic	novelGene_302	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACATCTTTCTTAAATCA	NA	False	NA	NA	False	NA	NA	NA	139497792	139470808	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_-_139470846_139497630
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074033	chr5	+	905	4	FSM	ENSMUSG00000036639.13	ENSMUST00000071881.10	952	4	47	0	-2	0	multi-exon	FALSE	canonical	3	19	junction_1	90.7450641449256	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317661	140323892	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_140317711_140320209_140320375_140321067_140321214_140323347
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074049	chr5	+	197	1	Intergenic	novelGene_303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGACTGTCGATCCCAGG	NA	False	NA	NA	False	AAGAAA	-1	NA	140380789	140380986	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_140380800_140381000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074068	chr5	+	2972	19	NNC	ENSMUSG00000056076.14	novel	2945	19	NA	NA	-23	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_15	757.296572529833	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGTCCTGATCTCTT	NA	False	NA	15	True	AATAAA	-16	NA	140405059	140429115	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_140405582_140411016_140411210_140412191_140412312_140412537_140412596_140412771_140412901_140413164_140413323_140415806_140415939_140416016_140416084_140416725_140416773_140418678_140418890_140422002_140422076_140423039_140423163_140424070_140424150_140425667_140425807_140426740_140426871_140427491_140427570_140427878_140427988_140428074_140428192_140428628
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074069	chr5	+	2975	19	NNC	ENSMUSG00000056076.14	novel	2945	19	NA	NA	-23	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	756.13551270936	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCCTGATCTCTTTGT	NA	False	NA	18	True	AATAAA	-19	NA	140405059	140429118	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_140405582_140411016_140411210_140412191_140412312_140412537_140412596_140412771_140412901_140413164_140413323_140415806_140415939_140416016_140416084_140416725_140416773_140418678_140418894_140422002_140422076_140423039_140423163_140424070_140424150_140425667_140425807_140426740_140426867_140427491_140427570_140427878_140427988_140428074_140428192_140428628
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074078	chr5	+	1783	2	FSM	ENSMUSG00000036599.11	ENSMUST00000124142.2	766	2	68	-1085	68	-486	multi-exon	FALSE	canonical	3	9	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCATTCCTGTGGTTC	NA	False	NA	19	True	AGTAAA	-15	NA	140491397	140510993	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_140491483_140509295
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074091	chr5	+	3341	14	FSM	ENSMUSG00000000148.18	ENSMUST00000041588.13	3333	14	-8	0	-8	0	multi-exon	FALSE	canonical	3	71	junction_1	10.6471097836719	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTCTTCTCTTTGAGG	NA	False	NA	NA	False	NA	NA	NA	140690757	140705134	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_140690831_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698633_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074115	chr5	-	2297	1	ISM	ENSMUSG00000000149.11	ENSMUST00000000153.9	3416	4	69724	3	69450	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCTGCTTCATGCCTAG	NA	False	NA	NA	False	AATAAA	-24	NA	140746462	140744165	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_-_140744200_140746500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074129	chr5	+	2813	17	NNC	ENSMUSG00000039623.14	novel	3689	17	NA	NA	-15	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	24.9210472041205	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGGTGGCACATGCCTT	8675	False	NA	17	True	AATAAA	-22	NA	142449783	142463560	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458144_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074154	chr5	+	4281	12	FSM	ENSMUSG00000029578.16	ENSMUST00000036872.16	5171	12	-22	912	-22	-912	multi-exon	FALSE	canonical	3	377	junction_9	31.2155926283724	296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGTCAAGTGCATGGTT	NA	False	NA	18	True	AATAAA	-19	NA	142615274	142655431	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_142615588_142623956_142624040_142641602_142641773_142643946_142644044_142644819_142644918_142645287_142645381_142646779_142646851_142648789_142648898_142650079_142650245_142651177_142651286_142651848_142652007_142652614
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074169	chr5	+	2819	11	FSM	ENSMUSG00000050822.12	ENSMUST00000058418.8	2789	11	-23	-7	-23	7	multi-exon	TRUE	canonical	3	36	junction_7	3.13847096529504	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGAGGAAGTGTTTGTG	NA	False	NA	NA	False	ATTAAA	-24	NA	142687832	142708252	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_142688047_142691110_142691291_142697717_142697850_142698641_142698756_142699765_142699895_142700800_142700876_142703346_142703592_142704211_142704354_142704465_142704654_142705711_142705953_142707093
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074196	chr5	-	1893	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-2	intron_retention	FALSE	canonical	0	0	junction_3	1656.31755409402	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8918	False	NA	-3	True	AATAAA	-25	NA	142892480	142888871	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890987_142891232_142891318_142891448_142892406
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074214	chr5	+	2021	2	ISM	ENSMUSG00000029581.15	ENSMUST00000031565.15	2675	5	13	2185	13	326	intron_retention	FALSE	canonical	3	2755	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAAAAGAAGGTGGAGCC	NA	False	NA	NA	False	NA	NA	NA	142946110	142956755	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_142947036_142955659
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074215	chr5	+	2664	5	NNC	ENSMUSG00000029581.15	novel	2157	6	NA	NA	13	0	intron_retention	FALSE	canonical	0	0	junction_2	1216.94022038882	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCCGTGTGTGTCTCAGG	NA	False	NA	16	True	AATAAA	-16	NA	142946110	142958938	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_+_142947036_142955659_142955821_142955921_142956044_142956272_142956441_142957650
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074233	chr5	-	4504	17	NNC	ENSMUSG00000045078.13	novel	4474	17	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.8992078798508	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGCTCTGTTTGTCCC	6108	False	NA	-1	True	AATAAA	-16	NA	143098771	142976647	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_142978721_142979252_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073269_143073377_143075497_143075575_143075874_143076514_143078749_143078881_143084133_143084261_143098653
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074278	chr5	-	1348	8	FSM	ENSMUSG00000001844.11	ENSMUST00000001900.9	1364	8	16	0	-11	0	multi-exon	TRUE	canonical	3	167	junction_7	40.248209492435	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5285	False	NA	-13	True	AATACA	-26	NA	143314995	143302243	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074288	chr5	+	1887	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	-55	-3	-55	3	multi-exon	FALSE	canonical	3	606	junction_2	10.3531396204243	239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGGTCTTTTCTATGAA	NA	False	NA	NA	False	AATAAA	-18	NA	143389537	143407659	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074299	chr5	-	2323	6	FSM	ENSMUSG00000001847.15	ENSMUST00000080537.14	4159	6	-8	1844	-8	4	multi-exon	FALSE	canonical	3	1143	junction_4	56.2444663944819	419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTATGCTTGTGTTTTT	3415	False	NA	-5	True	AATAAA	-17	NA	143513799	143491232	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_143492861_143493081_143493242_143493850_143493914_143500423_143500542_143502912_143502985_143513517
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074314	chr5	+	3732	13	FSM	ENSMUSG00000018001.19	ENSMUST00000116456.10	3738	13	6	0	6	0	multi-exon	FALSE	canonical	3	61	junction_12	7.06468132488807	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCTAAGACTCAATTCTT	NA	False	NA	5	True	AATAAA	-22	NA	143608207	143696005	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_143608429_143670150_143670234_143672227_143672293_143672732_143672800_143678302_143678422_143683470_143683552_143687073_143687187_143687351_143687501_143688568_143688681_143692838_143692916_143692993_143693066_143693149_143693305_143693587
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074334	chr5	-	1065	4	FSM	ENSMUSG00000029610.14	ENSMUST00000100483.3	1073	4	8	0	0	0	multi-exon	FALSE	canonical	3	207	junction_3	226.993881464286	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	143846657	143839521	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846518
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074382	chr5	+	525	5	ISM	ENSMUSG00000045482.17	ENSMUST00000136379.2	2621	12	56	9922	56	857	5prime_fragment	FALSE	canonical	3	42	junction_1	9.03811374126261	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCTTTGACAATTCTCT	NA	False	NA	NA	False	NA	NA	NA	144704957	144714795	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_144705056_144707898_144708060_144708417_144708468_144713912_144714024_144714690
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074426	chr5	+	916	6	FSM	ENSMUSG00000038722.18	ENSMUST00000160075.2	928	6	19	-7	19	0	multi-exon	FALSE	canonical	3	107	junction_1	298.93035978301	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTTCTTTTAAGAGTG	NA	False	NA	20	True	AATAAA	-21	NA	145077243	145084888	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_145077374_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074436	chr5	+	1709	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160629.8	1713	8	5	-1	5	1	multi-exon	FALSE	canonical	3	267	junction_6	186.36939400129	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGTTTCATTACTTAAA	NA	False	NA	24	True	ATTAAA	-16	NA	145104027	145118852	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115645_145115739_145117945
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074462	chr5	+	3827	6	FSM	ENSMUSG00000055991.16	ENSMUST00000085671.10	3794	6	-33	0	-33	0	multi-exon	FALSE	canonical	3	45	junction_2	9.08625335328044	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACTTGAGGTTTCTCTC	904	False	NA	10	True	ATTAAA	-15	NA	145141338	145158560	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_145142519_145144385_145144519_145148555_145148639_145149314_145149451_145155096_145155694_145156862
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074491	chr5	-	3333	5	FSM	ENSMUSG00000029634.16	ENSMUST00000161859.8	3452	5	118	1	-19	-1	multi-exon	FALSE	canonical	3	59	junction_4	27.6348964173923	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTGTGCAAACTTATTT	2299	False	NA	NA	False	ATTAAA	-27	NA	146158247	146146002	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146158029
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074508	chr5	+	247	1	Intergenic	novelGene_304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGAAGAGAGTTCAAGAG	NA	False	NA	21	True	NA	NA	NA	146197788	146198035	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_146197800_146198000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074560	chr5	-	1722	5	FSM	ENSMUSG00000016510.12	ENSMUST00000016654.9	2131	5	0	409	0	-409	multi-exon	FALSE	canonical	3	7	junction_4	53.5863788662753	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGTAGTGAATCTGAC	NA	False	NA	-18	True	AATAAA	-17	NA	146900597	146891738	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900030_146900191_146900532
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074578	chr5	+	209	1	Intergenic	novelGene_305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTTAAAGTGACATGGAAT	NA	False	NA	NA	False	NA	NA	NA	147334087	147334296	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr5_+_147334100_147334300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074590	chr5	-	1299	5	Antisense	novelGene_ENSMUSG00000029651.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_2	4.55521678957215	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGTAGTATACTCTTTC	8568	False	NA	-1	True	NA	NA	NA	147949165	147941084	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr5_-_147941718_147942673_147942827_147943327_147943469_147943860_147944081_147949013
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074618	chr5	-	2599	6	FSM	ENSMUSG00000001687.16	ENSMUST00000201595.4	2064	6	-46	-489	-46	-5	multi-exon	FALSE	canonical	3	120	junction_5	118.120954957196	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAGTGCATTTTGTTGAT	NA	False	NA	-9	True	AATAAA	-16	NA	148489645	148441449	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703_148448813_148488762_148488861_148488966
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074641	chr5	-	1714	2	NNC	ENSMUSG00000024437.7	novel	737	2	NA	NA	17	989	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTAGTTCTTTATTTCCA	NA	False	NA	NA	False	AATAAA	-8	NA	149093002	149090928	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_149092357_149092716
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074645	chr5	-	1889	2	NNC	ENSMUSG00000024437.7	novel	737	2	NA	NA	17	989	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTAGTTCTTTATTTCCA	NA	False	NA	NA	False	AATAAA	-8	NA	149093002	149090928	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr5_-_149092532_149092716
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074648	chr5	+	3494	8	FSM	ENSMUSG00000041264.17	ENSMUST00000121416.8	3792	8	304	-6	-9	0	multi-exon	FALSE	canonical	3	149	junction_1	82.9762690441658	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	16	True	ATTAAA	-16	NA	149121463	149152244	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074654	chr5	+	3653	9	FSM	ENSMUSG00000041264.17	ENSMUST00000050472.16	3757	9	103	1	0	0	multi-exon	FALSE	canonical	3	191	junction_1	75.8798392196504	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTGGTTTCATTTTGT	NA	False	NA	15	True	ATTAAA	-15	NA	149121472	149152243	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074700	chr5	+	3899	15	FSM	ENSMUSG00000051950.11	ENSMUST00000100404.6	4570	15	-14	685	-14	-685	multi-exon	FALSE	canonical	3	479	junction_13	51.6933659344471	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAATTTTGAGCCTGGAT	NA	False	NA	NA	False	NA	NA	NA	149601680	149685379	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr5_+_149601845_149619889_149619940_149626743_149626784_149632784_149632895_149648875_149648953_149650218_149650331_149653388_149653526_149656137_149656202_149658834_149658955_149662996_149663067_149668890_149669005_149669969_149670070_149673895_149674016_149677529_149677675_149682903
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074720	chr5	+	2232	10	ISM	ENSMUSG00000041147.11	ENSMUST00000202003.4	3473	11	-2	2754	0	18	5prime_fragment	FALSE	canonical	3	12	junction_1	19.2687298651801	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATTTACTCTGTAAGTG	370	False	NA	NA	False	AATAAA	-9	NA	150446094	150460459	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr5_+_150446556_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074744	chr6	-	298	1	Intergenic	novelGene_306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCGGTTTGTTGCATCT	NA	False	NA	NA	False	NA	NA	NA	3405056	3404758	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_-_3404800_3405100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074764	chr6	+	188	1	Intergenic	novelGene_307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGACAGATCCTGGAAACAG	NA	False	NA	NA	False	NA	NA	NA	5222987	5223175	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_+_5223000_5223200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074792	chr6	+	189	1	Intergenic	novelGene_308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGGGCTAATGGGTGAC	NA	False	NA	NA	False	NA	NA	NA	6537873	6538062	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_+_6537900_6538100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074794	chr6	-	501	3	FSM	ENSMUSG00000042541.11	ENSMUST00000041111.10	1472	3	-10	981	-5	-981	multi-exon	FALSE	canonical	3	3186	junction_2	110.5	400	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCTTGATCTTTTGCCT	17	False	6578685	1	True	AATAAA	-27	NA	6578668	6558274	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_6558492_6560407_6560502_6578478
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074808	chr6	-	2080	12	NIC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	-7	4	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	2473.51399917854	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGTTGTGGGTACCAGT	1704	False	NA	-5	True	AATAAA	-21	NA	7693117	7675164	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7692896
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074810	chr6	-	2195	11	NIC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	45	4	intron_retention	FALSE	canonical	3	8132	junction_7	324.444078386399	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGTTGTGGGTACCAGT	5	True	NA	-5	True	AATAAA	-21	NA	7693209	7675164	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682457_7685168_7685407_7689251_7689524_7693108
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074834	chr6	-	1959	12	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	45	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	2465.67708837395	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	5	True	NA	-9	True	AATAAA	-17	NA	7693209	7675168	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685401_7689242_7689524_7693108
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074836	chr6	-	1952	12	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	45	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2467.73477284146	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	5	True	NA	-9	True	AATAAA	-17	NA	7693209	7675168	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680088_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074837	chr6	-	3470	11	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	45	0	intron_retention	FALSE	canonical	0	0	junction_6	2603.59724419888	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	5	True	NA	-9	True	AATAAA	-17	NA	7693209	7675168	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7681571_7681650_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074848	chr6	-	1950	12	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	45	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2486.49352494367	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	5	True	NA	-9	True	AATAAA	-17	NA	7693209	7675168	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_7675525_7675992_7676139_7676230_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074912	chr6	-	3925	5	FSM	ENSMUSG00000029569.10	ENSMUST00000031554.9	4587	5	55	607	-1	-607	multi-exon	TRUE	canonical	3	155	junction_4	32.9194091684526	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGCTTTTAGAGTTT	-14	True	NA	NA	False	ATTAAA	-19	NA	13608044	13581292	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13602236_13603487_13607828
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074920	chr6	-	1067	3	FSM	ENSMUSG00000052419.8	ENSMUST00000139231.2	3177	3	46	2064	-6	1	multi-exon	FALSE	canonical	3	64	junction_2	22	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTTTTGGTCTGCTT	861	False	NA	NA	False	AATACA	-23	NA	13871471	13869797	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_13870740_13871054_13871146_13871437
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000074989	chr6	-	2938	18	FSM	ENSMUSG00000029676.16	ENSMUST00000115330.8	3151	18	8	205	-2	-205	multi-exon	TRUE	canonical	3	94	junction_8	16.939542404853	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTGTCTGTGTGTGTG	8	True	NA	-3	True	AATAAA	-17	NA	25809217	25743940	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873_25805941_25809173
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075001	chr6	-	4064	2	FSM	ENSMUSG00000029708.10	ENSMUST00000090511.4	4650	2	-2	588	-2	-588	multi-exon	FALSE	canonical	3	46	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTTCTTAATGGTG	-15	True	NA	0	True	ATTAAA	-15	NA	28421725	28416677	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_28419300_28420283
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075038	chr6	-	2427	14	NNC	ENSMUSG00000003500.14	novel	2437	14	NA	NA	15	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	64.2501582895847	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGATCCTGTTTCTGTC	-16	True	NA	0	True	AATAAA	-20	NA	29212281	29200434	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206917_29206997_29207093_29207196_29209218_29209268_29212067
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075064	chr6	+	3215	7	FSM	ENSMUSG00000029767.17	ENSMUST00000090481.14	2670	7	0	-545	0	-1	multi-exon	FALSE	canonical	3	300	junction_2	301.970979105977	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGTGTCTTTTATTCT	-1	True	NA	117	True	AATAAA	-21	NA	29348117	29376673	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_29348208_29356469_29356697_29361558_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075080	chr6	-	3479	23	FSM	ENSMUSG00000012535.15	ENSMUST00000012679.15	4251	23	28	744	28	0	multi-exon	FALSE	canonical	3	521	junction_17	54.5301683125804	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAAGGAAAGCTGA	-17	True	NA	NA	False	AAAAAG	-9	NA	29609858	29541569	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075090	chr6	+	2028	8	FSM	ENSMUSG00000001763.15	ENSMUST00000046750.14	1994	8	-34	0	-34	0	multi-exon	FALSE	canonical	3	27	junction_2	5.15474815790535	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTGTCCTACATCAATT	-2	True	NA	9	True	AATAAA	-18	NA	29694186	29718558	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_29694544_29709939_29709998_29710585_29710714_29711014_29711090_29713437_29713534_29716703_29716833_29717188_29717351_29717535
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075113	chr6	+	195	1	Intergenic	novelGene_309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCAGTCGACTGATAGTC	NA	False	NA	NA	False	NA	NA	NA	30038743	30038938	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_+_30038700_30038900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075118	chr6	+	2315	12	NIC	ENSMUSG00000058440.15	novel	3584	12	NA	NA	-3	-16	combination_of_known_junctions	FALSE	canonical	3	218	junction_2	102.024061333144	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGGCTTTACTGAGGTA	-31	True	NA	NA	False	AATAAA	-43	NA	30047983	30140887	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075144	chr6	+	2332	13	NNC	ENSMUSG00000058440.15	novel	3584	12	NA	NA	7	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	167.068411636272	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGGCTTTACTGAGGTAG	-7	True	NA	NA	False	AATAAA	-44	NA	30048007	30140888	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_+_30048113_30088831_30088988_30089913_30090146_30090267_30090308_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075171	chr6	-	4684	7	FSM	ENSMUSG00000039159.17	ENSMUST00000102993.10	4657	7	-27	0	-27	0	multi-exon	FALSE	canonical	3	201	junction_3	56.6345497220753	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTGAACTTGATCTATCA	-24	True	NA	-2	True	AATAAA	-22	NA	30304565	30211287	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_30215083_30221666_30221796_30241370_30241424_30242536_30242577_30260927_30261003_30262145_30262223_30304050
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075206	chr6	+	2613	12	FSM	ENSMUSG00000051855.16	ENSMUST00000163949.9	2561	12	-48	-4	-48	1	multi-exon	FALSE	canonical	3	246	junction_7	40.2939611577855	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGCTTCCCCTCCCCCT	NA	False	NA	17	True	AATAAA	-23	NA	30738000	30748465	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_30738335_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075212	chr6	+	2562	12	NNC	ENSMUSG00000051855.16	novel	2561	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	100.16622548181	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATTCCGGCTTCCCCTCC	0	True	NA	13	True	AATAAA	-19	NA	30738051	30748461	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_+_30738335_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742856_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075226	chr6	-	3152	24	FSM	ENSMUSG00000025607.16	ENSMUST00000048774.13	3961	24	-40	849	15	9	multi-exon	FALSE	canonical	3	177	junction_15	22.2825132553629	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTATACTTGAAATTTC	NA	False	NA	-5	True	AATAAA	-24	NA	30873714	30748401	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075234	chr6	+	2477	18	FSM	ENSMUSG00000025609.16	ENSMUST00000026699.15	11395	18	77	8841	-16	2	multi-exon	FALSE	canonical	1	225	junction_9	99.990726213583	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTATATTTTTCTTTAG	NA	False	NA	19	True	AATAAA	-27	NA	31375746	31484905	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075254	chr6	+	4822	18	FSM	ENSMUSG00000029763.18	ENSMUST00000052266.15	4824	18	2	0	2	0	multi-exon	FALSE	canonical	3	107	junction_11	15.4671210608191	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGTATGTTGTTTTTCTC	NA	False	NA	20	True	ATTAAA	-22	NA	33226021	33950914	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33309145_33309390_33324717_33324893_33415314_33415461_33418885_33418975_33556916_33557014_33734901_33735122_33792608_33792746_33815909_33816066_33838995_33839175_33887422_33887565_33895335_33895515_33898312_33898473_33948848
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075295	chr6	-	593	3	ISM	ENSMUSG00000038784.14	ENSMUST00000202417.2	3296	11	-1	33080	-1	-25176	5prime_fragment	FALSE	canonical	3	141	junction_1	39.5	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTCAGAAAATAGAAAACAT	7645	False	NA	NA	False	NA	NA	NA	35110660	35055010	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr6_-_35055114_35056895_35057162_35110436
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075300	chr6	+	6232	43	FSM	ENSMUSG00000038759.16	ENSMUST00000043815.16	6412	43	187	-7	1	7	multi-exon	FALSE	canonical	2	193	junction_5	62.1117418909309	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGGTCATTCTTTTGAA	NA	False	NA	NA	False	AATAAA	-23	NA	35154551	35224538	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259_35182470_35185015_35185116_35185729_35185868_35187762_35187953_35189661_35189783_35191252_35191335_35191580_35191746_35192008_35192134_35196619_35196735_35200447_35200598_35201080_35201153_35201456_35201615_35202118_35202200_35202724_35202917_35204237_35204506_35204599_35204699_35207438_35207588_35209332_35209525_35210270_35210393_35211612_35211752_35213700_35213828_35215879_35215957_35217943_35218073_35218253_35218384_35220753_35220921_35221631_35221756_35222182_35222312_35222956_35223016_35224195
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075327	chr6	+	3793	1	FSM	ENSMUSG00000107310.2	ENSMUST00000202891.2	3039	1	-199	-555	-151	555	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGGGAGGGAAATCCAAAC	NA	False	NA	NA	False	NA	NA	NA	36933585	36937378	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_36933600_36937400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075329	chr6	-	2622	11	NNC	ENSMUSG00000038648.6	novel	7082	12	NA	NA	-40985	3170	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_10	25.5556256037687	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTCCTCTTTCATACAA	7987	False	NA	NA	False	ATTAAA	-25	NA	37354455	37308056	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_37309436_37311297_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37354383
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075339	chr6	+	1144	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	-111	-568	-111	568	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGGAAAATCCTAAAGCAC	NA	False	NA	NA	False	AATAAA	-42	NA	37782909	37784053	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_37782900_37784100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075351	chr6	+	4042	19	FSM	ENSMUSG00000029833.18	ENSMUST00000031859.14	4042	19	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_9	112.54974208964	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGTTATTGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-21	NA	37847745	37943231	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_37848410_37880467_37880587_37885151_37885300_37892099_37892233_37896308_37896426_37904460_37904576_37908288_37908436_37920347_37920466_37922455_37922725_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075357	chr6	+	200	1	Intergenic	novelGene_310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCCCTTCACGTCAGA	NA	False	NA	NA	False	NA	NA	NA	38034694	38034894	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_+_38034700_38034900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075368	chr6	-	3434	9	FSM	ENSMUSG00000029826.15	ENSMUST00000031850.10	3400	9	-34	0	-34	0	multi-exon	TRUE	canonical	3	57	junction_7	12.2212673238089	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTTGGATTTTTTT	9630	False	NA	-3	True	NA	NA	NA	38331572	38292602	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075375	chr6	+	502	1	FSM	ENSMUSG00000057696.5	ENSMUST00000119767.2	348	1	-71	-83	-71	83	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAACATTCTCCCAGCAG	1143	False	NA	NA	False	NA	NA	NA	38353670	38354172	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_38353700_38354200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075397	chr6	-	2256	5	FSM	ENSMUSG00000071537.7	ENSMUST00000096030.7	2276	5	-9	29	0	-29	multi-exon	TRUE	canonical	3	11	junction_3	4.14578098794425	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGACCTTCACAAGATGGT	NA	False	NA	NA	False	AATAAA	-16	NA	38614177	38603623	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_38604661_38605019_38605124_38606698_38606845_38607215_38607318_38613310
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075423	chr6	-	2105	13	ISM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	-19	8846	-19	291	5prime_fragment	TRUE	canonical	3	160	junction_12	41.2501683498248	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTGACTGTATAATTAAA	NA	False	NA	1	True	AATAAA	-19	NA	39354628	39320552	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr6_-_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075441	chr6	-	2913	8	NNC	ENSMUSG00000029922.16	novel	3046	8	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	159	junction_1	1397.39899784695	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	False	NA	4	True	AATAAA	-24	NA	39397387	39374737	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_39376245_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075445	chr6	-	2810	7	NIC	ENSMUSG00000029922.16	novel	3046	8	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	3	82	junction_4	1528.48450724529	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	False	NA	4	True	AATAAA	-24	NA	39397387	39374737	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39382664_39382895_39387021_39387151_39397032
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075451	chr6	-	2912	8	NIC	ENSMUSG00000029922.16	novel	2992	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	157	junction_7	1165.4745726921	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	False	NA	4	True	AATAAA	-24	NA	39397003	39374737	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39396773
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075452	chr6	-	3034	8	NNC	ENSMUSG00000029922.16	novel	3046	8	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1436.90968003261	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	False	NA	4	True	AATAAA	-24	NA	39397387	39374737	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382667_39382895_39387021_39387151_39397032
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075488	chr6	+	203	1	Intergenic	novelGene_311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCATCTATTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	39477855	39478058	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_+_39477900_39478100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075490	chr6	+	2548	8	FSM	ENSMUSG00000046947.13	ENSMUST00000140364.8	3542	8	0	994	0	23	multi-exon	FALSE	canonical	3	19	junction_2	10.7437689582647	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGTTGCATCTTGTC	NA	False	NA	41	True	AATACA	-41	NA	39550806	39564709	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_39552141_39553296_39553444_39556596_39556726_39557929_39558026_39560744_39560997_39562660_39562790_39563774_39563829_39564302
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075494	chr6	+	484	4	FSM	ENSMUSG00000002416.14	ENSMUST00000135671.8	4371	4	-25	3912	-25	-1	multi-exon	FALSE	canonical	3	748	junction_3	834.773555456142	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTATGTTTCTGATGACA	NA	False	NA	29	True	ATTAAA	-38	NA	39569482	39576404	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_39569647_39573384_39573530_39575199_39575296_39576325
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075498	chr6	+	471	4	FSM	ENSMUSG00000002416.14	ENSMUST00000119379.2	455	4	-18	2	-9	-2	multi-exon	FALSE	canonical	3	713	junction_3	851.269770532363	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTATGTTTCTGATGAC	NA	False	NA	28	True	ATTAAA	-37	NA	39569498	39576403	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_39569647_39573384_39573530_39575199_39575300_39576325
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075516	chr6	+	2288	17	NIC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_5	181.494049058778	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTGTAATCTAAATGCA	NA	False	NA	8	True	NA	NA	NA	40302428	40373696	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40331947_40332028_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075523	chr6	+	834	4	ISM	ENSMUSG00000029916.12	ENSMUST00000201342.4	785	8	24	15873	1	15	5prime_fragment	FALSE	canonical	3	547	junction_1	54.1130503873347	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTACAGTGTTAGTTAGGT	NA	False	NA	NA	False	AAAAAG	-24	NA	40302442	40329951	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075534	chr6	+	1213	6	FSM	ENSMUSG00000029911.15	ENSMUST00000121360.8	1188	6	-24	-1	-9	1	multi-exon	FALSE	canonical	3	2472	junction_3	238.868666844356	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGTTATATTTTTCTTG	NA	False	NA	NA	False	ATTAAA	-16	NA	40448377	40457930	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075542	chr6	+	322	1	FSM	ENSMUSG00000029911.15	ENSMUST00000201570.2	2837	1	0	2515	0	-2515	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCGAGACAACTTCTATT	NA	False	NA	NA	False	NA	NA	NA	40448386	40448708	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_40448400_40448700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075580	chr6	-	333	2	Antisense	novelGene_ENSMUSG00000039419.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGGCGAGTGATGGAGGA	NA	False	NA	NA	False	NA	NA	NA	47167374	47166899	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr6_-_47167209_47167350
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075606	chr6	-	2664	20	FSM	ENSMUSG00000029687.17	ENSMUST00000081721.13	2787	20	-12	135	-12	45	multi-exon	TRUE	canonical	3	406	junction_7	166.792654135859	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTGTCCTAGAACATCA	NA	False	NA	-13	True	AATAAA	-24	NA	47571976	47507207	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075612	chr6	-	2564	19	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	-10	45	combination_of_known_junctions	FALSE	canonical	3	443	junction_6	133.55213528621	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTGTCCTAGAACATCA	NA	False	NA	-13	True	AATAAA	-24	NA	47572002	47507207	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075628	chr6	-	2543	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	-91	-53	-91	53	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTTTTTTATTTCTTC	8799	False	NA	76	True	NA	NA	NA	47790455	47773021	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075634	chr6	-	2328	10	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	595.124346380083	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTGTTTGCCTTTTATT	8956	False	NA	21	True	TTTAAA	-22	NA	47790298	47773076	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783442_47783579_47783939_47784146_47785108_47785278_47790150
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075640	chr6	-	2860	4	FSM	ENSMUSG00000051499.8	ENSMUST00000058844.6	3191	4	334	-3	-29	3	multi-exon	FALSE	canonical	3	13	junction_2	4.64279609239471	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCGTTTGGGTTTGCTTT	6054	False	NA	-4	True	AATACA	-23	NA	47807467	47796196	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_47798636_47801974_47802131_47803895_47804023_47807329
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075662	chr6	+	2760	5	FSM	ENSMUSG00000045466.19	ENSMUST00000101445.11	2761	5	1	0	1	0	multi-exon	FALSE	canonical	3	26	junction_2	2.77263412660235	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGTCTTGCCTTGACC	9714	False	NA	18	True	AATAAA	-23	NA	47930324	47942234	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_47930517_47932750_47933105_47934409_47934537_47939458_47939567_47940255
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075684	chr6	-	1252	6	ISM	ENSMUSG00000057691.9	ENSMUST00000073124.9	3651	7	54	3821	7	-5	5prime_fragment	FALSE	canonical	3	96	junction_1	16.8760184877832	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATATTTTTCCTCCAGGC	1104	False	NA	NA	False	NA	NA	NA	48063473	48043149	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr6_-_48043489_48044102_48044295_48059087_48059202_48060026_48060109_48060239_48060540_48063248
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075699	chr6	+	471	1	FSM	ENSMUSG00000095526.3	ENSMUST00000117571.2	333	1	-62	-76	-62	76	mono-exon	FALSE	NA	NA	NA	NA	NA	384	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTAATGAAAAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	48500389	48500860	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_48500400_48500900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075702	chr6	-	874	1	FSM	ENSMUSG00000044211.10	ENSMUST00000056948.10	537	1	-41	-296	-41	296	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGCATATTTTTTTAGA	NA	False	NA	NA	False	AATAAA	-26	NA	48502065	48501191	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_48501200_48502100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075749	chr6	+	188	1	Intergenic	novelGene_312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCCCAGGCAGATGAACA	NA	False	NA	NA	False	NA	NA	NA	49134999	49135187	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_+_49135000_49135200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075815	chr6	-	1665	12	FSM	ENSMUSG00000004980.17	ENSMUST00000090002.10	1662	12	0	-3	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2567.02803044511	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446825	51438100	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075816	chr6	-	1565	12	NIC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	499	junction_1	2846.0788655782	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446825	51438100	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_51438414_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075833	chr6	-	2513	1	NIC	ENSMUSG00000004980.17	novel	1647	10	NA	NA	0	-1515	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGTAAATAAAAATTGAAAT	NA	False	NA	NA	False	AAGAAA	-1	NA	51446825	51444312	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_51444300_51446800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075874	chr6	+	3274	18	FSM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	11	0	-10	0	multi-exon	FALSE	canonical	3	527	junction_12	67.9651854701079	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTTTGTAAATGATTCG	NA	False	NA	NA	False	AATAAA	-27	NA	52690724	52743765	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075892	chr6	+	229	1	Intergenic	novelGene_313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTGTGGGATGAATTAAT	NA	False	NA	NA	False	NA	NA	NA	54696187	54696416	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_+_54696200_54696400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075906	chr6	+	2494	17	NNC	ENSMUSG00000029777.11	novel	2380	17	NA	NA	-107	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	747.261037786495	2054	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTGTGTTTCCATTTTTT	NA	False	NA	40	True	ATTAAA	-34	NA	55014884	55056490	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_+_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045163_55046332_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075933	chr6	-	3816	4	FSM	ENSMUSG00000059486.12	ENSMUST00000114323.8	3816	4	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_3	4.02768199119819	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTGGTTTTTTGGTTTT	9703	False	NA	0	True	AATAAA	-17	NA	56774721	56754508	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_56757399_56758785_56758952_56766203_56766686_56774443
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075963	chr6	-	810	2	FSM	ENSMUSG00000043162.8	ENSMUST00000053386.6	3573	2	-5	2768	-5	-2768	multi-exon	FALSE	canonical	3	182	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGTTTGTCTTATTTCT	NA	False	NA	NA	False	TATAAA	-20	NA	57669068	57666328	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_57666864_57668793
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075972	chr6	+	498	1	FSM	ENSMUSG00000071419.8	ENSMUST00000121788.2	438	1	-27	-33	-27	33	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGGGGGGGGGAAGAAG	NA	False	NA	13	True	AATAAA	-20	NA	57994463	57994961	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_57994500_57995000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000075996	chr6	+	220	1	Intergenic	novelGene_314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTTAAGTTTTTTT	NA	False	NA	65	True	NA	NA	NA	64977841	64978061	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_+_64977800_64978100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076000	chr6	+	1096	9	NIC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	-6	-55	combination_of_known_junctions	FALSE	canonical	3	279	junction_1	43.9936074901798	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGTTGCAAGGAATCAAAA	1721	False	NA	NA	False	NA	NA	NA	65019586	65051786	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076076	chr6	+	479	1	FSM	ENSMUSG00000068396.10	ENSMUST00000121998.2	354	1	-33	-92	-33	92	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTCCAGAACAATGAAAGAG	NA	False	NA	NA	False	NA	NA	NA	71101560	71102039	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_71101600_71102000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076138	chr6	-	2602	24	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-18	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	209.003948009491	242	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGTAAGCGTGTACATA	3030	False	NA	0	True	AATAAA	-29	NA	71885752	71857620	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861606_71862288_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076140	chr6	-	2600	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	276.455969175133	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3043	False	NA	-1	True	AATAAA	-28	NA	71885739	71857621	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861606_71862288_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884728_71884831_71885617
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076141	chr6	-	2537	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	264.826046133578	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3043	False	NA	-1	True	AATAAA	-28	NA	71885739	71857621	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861606_71862288_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076163	chr6	+	6113	34	FSM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	-8	3111	0	-3111	multi-exon	FALSE	canonical	3	275	junction_3	38.128991835157	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTAAGTTTTTAATCTTT	NA	False	NA	24	True	AATAAA	-34	NA	71886036	71956348	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676_71931830_71938507_71938591_71940657_71940824_71941649_71941872_71942539_71942755_71943359_71943528_71944295_71944432_71944842_71945001_71949681_71949809_71951084_71951196_71951727_71952004_71953002_71953204_71954317_71954436_71954927_71955093_71955398
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076176	chr6	-	3017	13	FSM	ENSMUSG00000056305.5	ENSMUST00000070345.5	2244	13	-21	-752	-21	752	multi-exon	FALSE	canonical	3	571	junction_6	46.7748745470139	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGATTAGCAGTGATGG	NA	False	NA	NA	False	AATAAA	-23	NA	72322188	72294908	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_72296223_72296722_72296810_72298238_72298375_72302628_72302772_72305500_72305690_72306432_72306501_72310092_72310171_72313242_72313469_72314684_72314838_72315375_72315513_72316949_72317045_72319881_72319952_72321867
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076191	chr6	-	2135	13	NNC	ENSMUSG00000056305.5	novel	2244	13	NA	NA	11	-91	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_12	177.981955233919	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGCTGTTGTTTCATATA	NA	False	NA	-24	True	ATTAAA	-19	NA	72322156	72295751	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_72296223_72296722_72296810_72298238_72298375_72302628_72302772_72305500_72305690_72306432_72306501_72310092_72310171_72313242_72313469_72314684_72314838_72315375_72315513_72316949_72317045_72319881_72319952_72321874
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076202	chr6	+	1542	8	FSM	ENSMUSG00000055912.9	ENSMUST00000069695.9	1546	8	0	4	0	-4	multi-exon	FALSE	canonical	3	88	junction_1	17.1583263538524	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTGCAGTGTGTTCTGGA	NA	False	NA	6	True	ATTAAA	-17	NA	72332429	72336741	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_72332528_72333113_72333296_72333704_72333753_72334032_72334120_72334931_72335000_72335290_72335419_72335561_72335740_72335988
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076236	chr6	-	2810	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	-3	-3	-3	3	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTATTACTTGTCCA	NA	False	NA	-8	True	AATAAA	-20	NA	72416544	72409778	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076241	chr6	-	3392	8	FSM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	-2	-3	0	3	multi-exon	FALSE	canonical	3	761	junction_3	40.6724095420862	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTATTACTTGTCCA	NA	False	NA	-8	True	AATAAA	-20	NA	72416541	72409778	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076259	chr6	-	2204	12	FSM	ENSMUSG00000056698.12	ENSMUST00000070990.8	2122	12	-70	-12	0	0	multi-exon	FALSE	canonical	3	36	junction_11	7.42677755109095	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTTCCAAGATGAAGTT	NA	False	NA	1	True	AATAAA	-23	NA	72575396	72542904	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72575304
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076278	chr6	+	1961	11	NNC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-26	47	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	151.410732776775	69	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGTTGTTAAGTCAAGAG	NA	False	NA	18	True	TATAAA	-23	NA	72575584	72584472	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580832_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076280	chr6	+	1957	11	NNC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-26	46	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	144.318571223526	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTGTTGTTAAGTCAAGA	NA	False	NA	17	True	TATAAA	-22	NA	72575584	72584471	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583862_72584017_72584224
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076316	chr6	-	736	2	FSM	ENSMUSG00000079523.9	ENSMUST00000144337.2	433	2	0	-303	0	1	multi-exon	FALSE	canonical	3	27215	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGGCGTGGTCTGAATT	NA	False	NA	-16	True	AATAAA	-15	NA	72935382	72934334	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_72935008_72935319
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076338	chr6	-	1210	6	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	12	526	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	269.009293519759	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCATGTCAGTTTATTG	NA	False	NA	NA	False	ATTAAA	-35	NA	81942927	81938428	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_81938566_81938746_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076365	chr6	-	5518	18	FSM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	-3	-2	-3	2	multi-exon	FALSE	canonical	3	435	junction_14	56.0328005768445	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTGTGTGATTGGATCT	9395	False	NA	1	True	AATAAA	-25	NA	82751438	82702003	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076382	chr6	-	1719	5	NIC	ENSMUSG00000068335.7	novel	1807	5	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	11.7686022959398	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCTGCGTATGAATGAG	NA	False	NA	-4	True	ATTAAA	-19	NA	83010438	83007914	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_83009042_83009285_83009397_83009515_83009610_83009747_83010048_83010351
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076419	chr6	+	1400	12	NIC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_2	307.048519599802	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5421	False	NA	9	True	ATTAAA	-19	NA	83031709	83034663	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_+_83031814_83031891_83031995_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076421	chr6	+	1661	11	NIC	ENSMUSG00000068328.11	novel	1265	11	NA	NA	0	0	intron_retention	TRUE	canonical	3	960	junction_9	76.9269783626005	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5421	False	NA	9	True	ATTAAA	-19	NA	83031709	83034663	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_+_83031814_83031891_83032030_83032109_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076440	chr6	+	181	1	ISM	ENSMUSG00000009145.7	ENSMUST00000077502.5	3257	12	9005	289	8752	-289	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	4550	False	NA	25	True	NA	NA	NA	83043829	83044010	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr6_+_83043800_83044000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076468	chr6	+	2779	4	FSM	ENSMUSG00000030036.9	ENSMUST00000032114.8	2780	4	5	-4	5	4	multi-exon	FALSE	canonical	3	308	junction_2	15.1070255914995	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTGCTTTAGACAGTTT	5178	False	NA	32	True	AATAAA	-21	NA	83092481	83095883	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_83092908_83092999_83093230_83093608_83093806_83093957
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076474	chr6	-	1191	4	FSM	ENSMUSG00000030035.15	ENSMUST00000113936.10	1314	4	122	1	-31	0	multi-exon	FALSE	canonical	3	41	junction_3	56.6627449623354	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTGATTCTGGGTAGA	NA	False	NA	-8	True	ATTAAA	-16	NA	83098418	83096025	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83098183
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076507	chr6	+	4115	28	FSM	ENSMUSG00000031865.17	ENSMUST00000077407.12	4118	28	5	-2	5	1	multi-exon	TRUE	canonical	3	372	junction_1	39.6793042772762	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTGTGTGGCTCTGA	498	False	NA	NA	False	ATTAAA	-17	NA	83142906	83177100	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_83142977_83159505_83159752_83160040_83160120_83160280_83160316_83166058_83166251_83166529_83166728_83166882_83167088_83167184_83167264_83167402_83167563_83167674_83167780_83167950_83168143_83168226_83168344_83168547_83168701_83169441_83169603_83169715_83169885_83170688_83170758_83170940_83171004_83171101_83171252_83171411_83171574_83171655_83171788_83171969_83172096_83172529_83172673_83172922_83173090_83174472_83174607_83174737_83174931_83175563_83175644_83176169_83176260_83176655
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076523	chr6	+	3123	12	ISM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	39984	-1	-34	0	3prime_fragment	FALSE	canonical	3	368	junction_2	56.2057907078168	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCATGTCTAATAACTGAG	5692	False	NA	25	True	AATAAA	-26	NA	83254340	83281927	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076530	chr6	+	1797	11	NIC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-10	281	combination_of_known_junctions	FALSE	canonical	3	81	junction_2	130.075362770972	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGCAAGTGGCCAGTGGT	5716	False	NA	12	True	AATAAA	-22	NA	83254364	83280739	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_+_83254554_83256945_83257147_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076532	chr6	+	1995	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-10	281	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_11	174.270144698779	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGCAAGTGGCCAGTGGT	5716	False	NA	12	True	AATAAA	-22	NA	83254364	83280739	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83276591_83276676_83277452_83277521_83280307
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076547	chr6	-	2109	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	-24	0	-24	0	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	2399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTGTCTCAGTCAGAC	NA	False	NA	2	True	AATAAA	-35	NA	83294612	83282672	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076562	chr6	+	4309	6	FSM	ENSMUSG00000043131.15	ENSMUST00000055261.11	4412	6	23	80	3	-79	multi-exon	FALSE	canonical	3	250	junction_4	40.3554209493595	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTTTGAAGTGTGTTAAC	NA	False	NA	18	True	AATAAA	-19	NA	83303020	83320678	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_83303250_83306848_83307016_83309435_83309530_83311057_83311192_83315262_83315427_83317157
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076575	chr6	-	1079	7	FSM	ENSMUSG00000014554.14	ENSMUST00000014698.10	1107	7	28	0	28	0	multi-exon	FALSE	canonical	3	197	junction_5	13.5369863706809	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483923	83457198	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076578	chr6	-	943	6	FSM	ENSMUSG00000014554.14	ENSMUST00000113888.3	1007	6	64	0	2	0	multi-exon	FALSE	canonical	3	23	junction_1	78.3019795407498	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483887	83457198	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_83457419_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076590	chr6	-	1381	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5442	2	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_3	36.2724068680312	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTAGGCGGACTTTGCTT	2726	False	NA	-9	True	NA	NA	NA	83675083	83669785	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_83670449_83671329_83671456_83672566_83672939_83673961_83674051_83674952
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076617	chr6	-	3329	5	FSM	ENSMUSG00000045896.15	ENSMUST00000058383.9	3982	5	-4	657	-4	-657	multi-exon	FALSE	canonical	3	74	junction_4	4.71036092035419	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCCAGGTTATTGTTA	NA	False	NA	NA	False	AATAAA	-22	NA	83808727	83783039	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_83785875_83786880_83787058_83791703_83791852_83808252_83808311_83808616
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076636	chr6	-	5436	22	FSM	ENSMUSG00000033769.17	ENSMUST00000160197.6	5439	22	4	-1	4	1	multi-exon	TRUE	canonical	3	201	junction_13	26.9684454901315	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCTTGTGAGATT	NA	False	NA	-1	True	ATTAAA	-31	NA	85046491	84595467	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_84598494_84602106_84602220_84723882_84723957_84768222_84768365_84812022_84812203_84820990_84821126_84825747_84825860_84828832_84828943_84830558_84830665_84831682_84831781_84832456_84832529_84835369_84835491_84837154_84837202_84837616_84837701_84867498_84867568_84885094_84885272_84966306_84966512_84980029_84980076_84980176_84980268_84981970_84982019_84988299_84988466_85046277
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076642	chr6	+	913	1	FSM	ENSMUSG00000081669.2	ENSMUST00000119728.2	528	1	-11	-374	-11	374	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACTACAGGCTTAATTAC	NA	False	NA	NA	False	NA	NA	NA	85053162	85054075	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_85053200_85054100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076663	chr6	+	2515	13	FSM	ENSMUSG00000033706.14	ENSMUST00000045693.8	2486	13	-24	-5	-24	5	multi-exon	FALSE	canonical	3	411	junction_7	60.725246442938	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGCCTTGTGGGGCGTGG	NA	False	NA	33	True	AATAAA	-27	NA	85408946	85423422	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85418791_85419092_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076707	chr6	+	1140	5	FSM	ENSMUSG00000054226.14	ENSMUST00000202803.4	716	5	1	-425	1	0	multi-exon	FALSE	canonical	3	153	junction_1	23.847169643377	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTAGATTTGGACTCTTA	3410	False	NA	NA	False	ATTAAA	-18	NA	85892720	85905502	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076720	chr6	+	315	1	FSM	ENSMUSG00000072940.6	ENSMUST00000119024.2	210	1	-20	-85	-20	85	mono-exon	FALSE	NA	NA	NA	NA	NA	311	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGTAAATACACGTTACT	NA	False	NA	NA	False	AATAAA	-21	NA	86310992	86311307	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_86311000_86311300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076732	chr6	+	452	4	FSM	ENSMUSG00000057278.9	ENSMUST00000089558.7	1055	4	182	421	-56	0	multi-exon	FALSE	canonical	3	2623	junction_2	545.029866663796	245	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	NA	False	NA	29	True	AATAAA	-20	NA	86348467	86355889	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_86348597_86352658_86352682_86353476_86353602_86355714
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076777	chr6	-	2952	14	FSM	ENSMUSG00000001157.14	ENSMUST00000001185.14	2949	14	-3	0	-3	0	multi-exon	FALSE	canonical	3	303	junction_7	38.1766371135774	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTGTTTAAAGTGA	NA	False	NA	-18	True	AATAAA	-20	NA	86710368	86668749	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_86670034_86674430_86674519_86677493_86677640_86681480_86681557_86684384_86684455_86687496_86687635_86688570_86688662_86691156_86691242_86694367_86694434_86694973_86695087_86698322_86698421_86699550_86699648_86703054_86703179_86709892
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076805	chr6	+	1201	9	NIC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	210	junction_1	876.96265598941	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986208	87005443	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076858	chr6	-	3250	1	NIC	ENSMUSG00000030057.16	novel	2175	5	NA	NA	11	-2269	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGAACAACAACAAATCTGA	NA	False	NA	NA	False	AATAAA	-1	NA	87828030	87824780	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_87824800_87828000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076910	chr6	-	2154	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	5	0	5	0	multi-exon	FALSE	canonical	3	1571	junction_1	157.281403859452	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTCTTTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	88022247	87976087	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076918	chr6	-	2234	7	NIC	ENSMUSG00000079477.10	novel	1657	8	NA	NA	10	-2	combination_of_known_junctions	FALSE	canonical	3	112	junction_6	799.58419749823	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTGCTGTCTGTCTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	88022242	87976089	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_87992613_87992701_88022054
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076923	chr6	+	2326	10	FSM	ENSMUSG00000030062.8	ENSMUST00000032143.8	3633	10	-13	1320	-13	597	multi-exon	FALSE	canonical	3	2268	junction_5	110.706262438987	1343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTCATGTAATTCTGAAG	524	False	NA	34	True	AATAAA	-40	NA	88061450	88080966	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88077964_88078956_88079203_88080346
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076953	chr6	+	3243	6	FSM	ENSMUSG00000015053.15	ENSMUST00000015197.9	3571	6	330	-2	330	0	multi-exon	FALSE	canonical	3	138	junction_4	9.31665175908169	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCGCCTGTTGAGTGG	NA	False	NA	14	True	AATAAA	-15	NA	88175645	88184014	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_88175864_88176498_88176772_88177200_88177843_88179400_88179547_88181564_88181691_88182176
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000076967	chr6	-	1010	5	NNC	ENSMUSG00000033216.10	novel	2679	7	NA	NA	0	-14467	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	199.232747057305	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCAAGCCCCAGTATGAA	NA	False	NA	NA	False	AAAAAG	-3	NA	88423496	88289554	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_88289786_88332464_88332630_88335527_88335625_88353185_88353394_88423187
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077002	chr6	-	1848	12	FSM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	-2	-1	-2	1	multi-exon	FALSE	canonical	3	139	junction_10	111.135015794021	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCCTGTTGTTGGGGTA	6962	False	NA	-3	True	AATAAA	-22	NA	88818884	88812894	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817819_88817883_88818750
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077075	chr6	+	2763	16	FSM	ENSMUSG00000000811.15	ENSMUST00000000828.14	2836	16	-12	85	-12	-85	multi-exon	FALSE	canonical	3	51	junction_10	10.7467824642231	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTGATCTAATTCGTT	NA	False	NA	6	True	ATTAAA	-17	NA	89620957	89652426	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_89621385_89627507_89627569_89628480_89628591_89631035_89631141_89631330_89631404_89633009_89633130_89638440_89638584_89640058_89640175_89641359_89641586_89642681_89642775_89646286_89646364_89646799_89646957_89649152_89649261_89649949_89650046_89651042_89651178_89651710
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077082	chr6	+	2455	6	FSM	ENSMUSG00000034430.17	ENSMUST00000113539.8	4864	6	110	2299	-6	-318	multi-exon	FALSE	canonical	3	93	junction_4	6.06630035524124	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCTTTTGAGTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	90346583	90359767	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_90347551_90349523_90349677_90349768_90349848_90350692_90350824_90355765_90355937_90358813
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077138	chr6	-	1369	3	FSM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	-1	2104	-1	-2104	multi-exon	FALSE	canonical	3	1002	junction_1	28.5	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATGGCTTTTTTTTC	NA	False	NA	-1	True	ATTAAA	-21	NA	91450529	91441257	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_91442296_91444664_91444764_91450297
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077144	chr6	+	2901	12	FSM	ENSMUSG00000030095.11	ENSMUST00000032183.6	2903	12	-2	4	-2	-4	multi-exon	FALSE	canonical	3	107	junction_7	13.7209497779825	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGCCAGTCGTTTGCTGT	9686	False	NA	NA	False	AATAAA	-26	NA	91450682	91465441	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_91450881_91454226_91454377_91455187_91455323_91455687_91455783_91456554_91456605_91456862_91456933_91457631_91457703_91458913_91459036_91459235_91459311_91459642_91459745_91462298_91462417_91463726
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077175	chr6	+	2591	14	NNC	ENSMUSG00000030096.9	novel	6186	15	NA	NA	-3	2746	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	133.785795409133	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAATGCTGGGTGGAATT	NA	False	NA	NA	False	NA	NA	NA	91661046	91732505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_+_91661290_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718038_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077207	chr6	-	4544	12	FSM	ENSMUSG00000014550.15	ENSMUST00000014694.11	5334	12	55	735	-21	-735	multi-exon	FALSE	canonical	3	92	junction_10	18.3307536376882	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCTAGTGACTTATTAAA	NA	False	NA	NA	False	NA	NA	NA	92191851	92164427	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_92167440_92168229_92168335_92170109_92170213_92170924_92171012_92175164_92175236_92176674_92176917_92178452_92178615_92178712_92178759_92179550_92179652_92184025_92184167_92188568_92188883_92191691
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077225	chr6	+	1907	10	FSM	ENSMUSG00000045100.12	ENSMUST00000061118.11	1922	10	0	15	0	-15	multi-exon	FALSE	canonical	3	22	junction_5	7.6610285226392	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTTCCTCTTTCACATT	NA	False	NA	NA	False	AATAAA	-21	NA	94477311	94581638	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94553314_94553360_94569392_94569463_94575360_94575426_94576159_94576234_94580532
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077231	chr6	-	2304	11	FSM	ENSMUSG00000061838.8	ENSMUST00000204224.3	3367	11	-62	1125	-62	8	multi-exon	FALSE	canonical	3	467	junction_5	91.8564096838103	424	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTGTTTCTGTCTGTTA	NA	False	NA	1	True	AATAAA	-30	NA	95695843	95451114	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077278	chr6	-	4478	5	FSM	ENSMUSG00000072872.4	ENSMUST00000101118.4	4503	5	27	-2	27	2	multi-exon	FALSE	canonical	3	260	junction_4	17.7552809045647	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGATGATTATTTTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	100264419	100205523	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_100209387_100209827_100209927_100210023_100210201_100263443_100263570_100264206
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077286	chr6	-	2009	11	FSM	ENSMUSG00000035378.18	ENSMUST00000170667.8	1990	11	-15	-4	-15	4	multi-exon	FALSE	canonical	0	0	junction_2	64.1530201939083	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTGTAAATAATTAGAAATG	NA	False	NA	2	True	AATAAA	-22	NA	100648133	100550038	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613928_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077299	chr6	+	2934	9	FSM	ENSMUSG00000052144.9	ENSMUST00000063854.7	4874	9	16	1924	16	388	multi-exon	FALSE	canonical	3	518	junction_7	39.1144155011934	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGAGTACATTTTTATC	9676	False	NA	23	True	AATAAA	-17	NA	100810598	100844971	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_100810879_100811677_100811760_100829445_100829617_100838370_100838465_100840083_100840122_100841639_100841715_100842034_100842179_100842748_100843045_100843217
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077307	chr6	+	2229	9	FSM	ENSMUSG00000013736.17	ENSMUST00000113248.4	1398	9	-11	-820	-11	0	multi-exon	FALSE	canonical	3	228	junction_1	232.818296907696	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTCGTTATTTCTGT	NA	False	NA	12	True	AATAAA	-21	NA	106746115	106759435	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_106746153_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077312	chr6	+	2281	9	FSM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	2	0	2	0	multi-exon	FALSE	canonical	3	574	junction_1	132.149477392081	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTCGTTATTTCTGT	NA	False	NA	12	True	AATAAA	-21	NA	106746128	106759435	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_106746218_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077317	chr6	-	2081	11	FSM	ENSMUSG00000005362.15	ENSMUST00000113239.10	2084	11	3	0	3	0	multi-exon	FALSE	canonical	3	188	junction_5	22.0871003076456	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTCCTTAATGTCATT	NA	False	NA	-33	True	AATAAA	-17	NA	106777032	106757161	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077338	chr6	+	1401	13	ISM	ENSMUSG00000030102.12	ENSMUST00000032192.9	9870	62	0	182044	0	-8738	5prime_fragment	TRUE	canonical	3	45	junction_5	7.36121593216773	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTATACTCTCTGGTCTCC	NA	False	NA	NA	False	AAGAAA	-4	NA	108190056	108346026	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr6_+_108190315_108191163_108191240_108213938_108214047_108218224_108218296_108316467_108316584_108326558_108326646_108328953_108329113_108331567_108331667_108333160_108333245_108333351_108333499_108340570_108340667_108342259_108342305_108345971
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077341	chr6	+	1356	12	NIC	ENSMUSG00000030102.12	novel	9870	62	NA	NA	0	-8738	combination_of_known_junctions	FALSE	canonical	3	5	junction_11	17.6227688934252	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTATACTCTCTGGTCTCC	NA	False	NA	NA	False	AAGAAA	-4	NA	108190056	108346026	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_+_108190315_108191163_108191240_108213938_108214047_108218224_108218296_108316467_108316584_108326558_108326646_108328953_108329113_108331567_108331667_108333160_108333245_108333351_108333499_108340570_108340667_108345971
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077372	chr6	-	1885	13	NIC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	0	242	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	58.64790182853	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTGAAATGTTCTGAAATGA	NA	False	NA	NA	False	NA	NA	NA	112673631	112597549	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077373	chr6	-	1800	12	FSM	ENSMUSG00000030254.17	ENSMUST00000077088.11	2577	12	38	739	0	242	multi-exon	FALSE	canonical	3	81	junction_1	49.718048005937	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTGAAATGTTCTGAAATGA	NA	False	NA	NA	False	NA	NA	NA	112673609	112597549	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_112597866_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077379	chr6	-	3616	12	NIC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_1	27.9506649191301	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTTGTTGTTGTTGTA	NA	False	NA	-4	True	AATAAA	-20	NA	112673631	112603375	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077391	chr6	+	2081	10	FSM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	87	-5	-3	5	multi-exon	TRUE	canonical	3	600	junction_1	54.2445309298778	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAGCGTTATTTTCCAAA	NA	False	NA	8	True	ATTAAA	-21	NA	113023272	113045239	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077407	chr6	-	1062	2	FSM	ENSMUSG00000086429.10	ENSMUST00000159544.3	822	2	136	-376	-6	0	multi-exon	FALSE	canonical	3	30	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGAATGACTTTTTAAT	NA	False	NA	0	True	NA	NA	NA	113054158	113047358	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_113048397_113054134
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077492	chr6	-	2278	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	13	19	intron_retention	FALSE	canonical	3	134	junction_9	97.0713114476818	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTTTAGTATCTATCTAT	NA	False	NA	-1	True	TATAAA	-12	NA	113354831	113343596	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354276
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077499	chr6	-	1550	8	NIC	ENSMUSG00000048930.13	novel	2848	9	NA	NA	-13	12	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	135.189662688976	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCCGCAAGTTTAGTATC	NA	False	NA	-8	True	TATAAA	-5	NA	113354350	113343603	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_113344142_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113354276
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077533	chr6	+	1195	2	FSM	ENSMUSG00000051256.11	ENSMUST00000101070.5	1201	2	8	-2	8	2	multi-exon	FALSE	canonical	3	705	junction_1	0	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTGTTGGAGATTTGATTG	NA	False	NA	35	True	AATAAA	-39	NA	113419537	113425192	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_113419759_113424218
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077544	chr6	+	2303	18	NIC	ENSMUSG00000030281.17	novel	2302	17	NA	NA	71	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	8.17117899020487	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTAGCACTCGTGTATC	5827	False	NA	6	True	AATAAA	-21	NA	113448458	113460101	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_+_113448749_113449031_113449054_113449191_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113451513_113451559_113453359_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077545	chr6	+	2258	17	NIC	ENSMUSG00000030281.17	novel	2302	17	NA	NA	71	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	10.8137643769411	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTAGCACTCGTGTATC	5827	False	NA	6	True	AATAAA	-21	NA	113448458	113460101	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_+_113448749_113449031_113449054_113449191_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113453359_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077554	chr6	+	2254	10	FSM	ENSMUSG00000030284.12	ENSMUST00000032422.6	2306	10	57	-5	57	0	multi-exon	TRUE	canonical	3	165	junction_1	17.0945085399441	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTCAGTCTTAACAACCCA	1514	False	NA	18	True	AATAAA	-24	NA	113460314	113470304	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_113461038_113461455_113461539_113465031_113465143_113465439_113465532_113466394_113466572_113466655_113466752_113468613_113468698_113468854_113468951_113469084_113469220_113469647
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077599	chr6	-	1619	8	NIC	ENSMUSG00000030298.11	novel	1353	9	NA	NA	28	-5	intron_retention	FALSE	canonical	3	942	junction_7	83.0657472568985	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTACTGTCATCCCACACA	2221	False	NA	-15	True	AATAAA	-18	NA	113717660	113705027	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_113705425_113706556_113706704_113707295_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077624	chr6	+	2404	20	NIC	ENSMUSG00000030314.17	novel	2543	21	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	29.4466041008941	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCTCAGGTCCTTCC	NA	False	NA	6	True	NA	NA	NA	114620077	114836185	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_+_114620112_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077628	chr6	+	2348	19	FSM	ENSMUSG00000030314.17	ENSMUST00000032457.17	3761	19	23	1390	2	0	multi-exon	FALSE	canonical	3	23	junction_1	29.6327313191359	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCTCAGGTCCTTCC	NA	False	NA	6	True	NA	NA	NA	114620080	114836185	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_114620112_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077660	chr6	+	2306	8	FSM	ENSMUSG00000000439.10	ENSMUST00000000449.9	6230	8	-14	3938	-14	-3938	multi-exon	FALSE	canonical	2	438	junction_3	36.5396066911353	338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTATTCCTGGCTTTCTT	NA	False	NA	NA	False	AATAAA	-33	NA	115578848	115595647	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_115578975_115586541_115586671_115587479_115587662_115588595_115588901_115590287_115590503_115591535_115591647_115594258_115594404_115594554
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077667	chr6	-	3068	17	FSM	ENSMUSG00000000441.18	ENSMUST00000000451.14	3070	17	2	0	2	0	multi-exon	FALSE	canonical	3	610	junction_8	72.4119076878934	1317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGTGCAGTTTCTTGT	8146	False	NA	0	True	AATAAA	-43	NA	115653594	115595529	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_115596371_115596519_115596655_115596745_115596878_115597169_115597289_115598776_115598824_115599837_115600015_115600424_115600510_115603251_115603370_115603672_115603801_115603899_115603928_115608175_115608330_115609857_115609957_115611513_115611672_115611938_115612042_115614559_115614673_115621370_115621604_115653196
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077718	chr6	-	177	1	ISM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	3059	7	2660	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	25	True	AATAAA	-15	NA	115782649	115782472	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr6_-_115782500_115782600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077725	chr6	-	3622	8	FSM	ENSMUSG00000030322.13	ENSMUST00000032469.13	3614	8	-8	0	-8	0	multi-exon	FALSE	canonical	0	0	junction_7	37.2010533096435	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCTTTGGCATTGTGTT	7873	False	NA	NA	False	AATAAA	-21	NA	115830340	115817657	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866_115826694_115827578_115827801_115830097
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077740	chr6	+	815	2	Genic_Genomic	ENSMUSG00000101878.2	novel	387	1	NA	NA	-106	391	multi-exon	FALSE	canonical	3	128	junction_1	0	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACCAAAACACCAAATGCA	NA	False	NA	NA	False	AATAAA	-32	NA	116150591	116151475	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr6_+_116150893_116150961
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077743	chr6	+	900	1	FSM	ENSMUSG00000101878.2	ENSMUST00000173192.2	387	1	-106	-407	-106	407	mono-exon	FALSE	NA	NA	NA	NA	NA	1556	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGCACTAAACAAAGCAAAAA	NA	False	NA	NA	False	NA	NA	NA	116150591	116151491	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_116150600_116151500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077798	chr6	+	2615	3	FSM	ENSMUSG00000042097.18	ENSMUST00000079405.15	3158	3	18	525	11	1	multi-exon	FALSE	canonical	3	13	junction_1	2	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTCCAATGTGTTCATTTG	NA	False	NA	13	True	TTTAAA	-7	NA	117840055	117849727	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_117840104_117846178_117846235_117847216
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077802	chr6	+	2310	4	FSM	ENSMUSG00000042079.14	ENSMUST00000167182.8	2271	4	-38	-1	-22	0	multi-exon	TRUE	canonical	3	103	junction_1	2299.04709728956	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	NA	False	NA	NA	False	AATAAA	-17	NA	117877262	117902583	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_117877468_117894430_117894560_117896059_117896121_117900668
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077807	chr6	+	2227	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	-74	-6	-69	3	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	1633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAGCTTATGTACTCAGC	3660	False	NA	NA	False	AATAAA	-20	NA	117883681	117902586	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077815	chr6	+	2220	5	FSM	ENSMUSG00000042079.14	ENSMUST00000179224.8	391	5	-5	-1824	-5	0	multi-exon	FALSE	canonical	3	26	junction_1	2359.29156474989	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	3724	False	NA	NA	False	AATAAA	-17	NA	117883745	117902583	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_117883801_117884109_117884170_117894430_117894560_117896059_117896121_117900668
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077838	chr6	+	2242	4	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	933	0	at_least_one_novel_splicesite	FALSE	canonical	3	135	junction_1	2283.97154097856	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	4721	False	NA	NA	False	AATAAA	-17	NA	117884742	117902583	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_+_117884880_117894430_117894560_117896059_117896121_117900668
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077850	chr6	+	2576	3	FSM	ENSMUSG00000042079.14	ENSMUST00000180020.8	2280	3	-294	-2	19	1	multi-exon	FALSE	canonical	3	4878	junction_1	99	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCACAGCTTATGTACTCA	NA	False	NA	NA	False	AATAAA	-18	NA	117893960	117902584	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_117894560_117896059_117896121_117900668
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077867	chr6	-	3633	8	FSM	ENSMUSG00000042042.15	ENSMUST00000049344.15	3661	8	28	0	28	0	multi-exon	FALSE	canonical	3	37	junction_1	9.61291648072041	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATGTGGTAAGTTCAT	NA	False	NA	NA	False	AATAAA	-24	NA	118116073	118084412	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_118086356_118091326_118091409_118096570_118096666_118097905_118098085_118101272_118101375_118103082_118103300_118105655_118106581_118115983
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077910	chr6	+	2877	1	FSM	ENSMUSG00000030019.7	ENSMUST00000032094.7	2963	1	86	0	86	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCCCCTTGTATCTGTGA	NA	False	NA	42	True	AATAAA	-43	NA	119456714	119459591	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_119456700_119459600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077928	chr6	+	222	1	Intergenic	novelGene_315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATTATTAAAATAGATTAA	NA	False	NA	NA	False	NA	NA	NA	120064236	120064458	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_+_120064200_120064500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077942	chr6	-	2038	12	NIC	ENSMUSG00000030177.15	novel	1887	12	NA	NA	5	1	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	79.1423030510953	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATCAAAACCAGAGAGGAAA	NA	False	NA	NA	False	NA	NA	NA	120341330	120301994	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120341034
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000077971	chr6	-	981	7	NNC	ENSMUSG00000058979.8	novel	1882	3	NA	NA	0	-3364	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	80.8386596183341	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGAAATTCTTTTGTT	NA	False	NA	NA	False	AAGAAA	-7	NA	120508280	120489818	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_120490030_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078069	chr6	+	560	1	FSM	ENSMUSG00000055093.11	ENSMUST00000119780.2	471	1	-40	-49	-40	49	mono-exon	FALSE	NA	NA	NA	NA	NA	1428	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGCTTCACAATGCAGGA	NA	False	NA	5	True	AATAAA	-31	NA	122433822	122434382	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_122433800_122434400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078101	chr6	+	2011	5	FSM	ENSMUSG00000012396.13	ENSMUST00000112580.8	2011	5	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	1758.10842953442	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684523	122691592	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_122684568_122684770_122684893_122688496_122688763_122689587_122689675_122690100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078109	chr6	+	2183	4	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	25	0	intron_retention	FALSE	canonical	3	354	junction_3	1978.73567938947	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684551	122691592	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690103
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078112	chr6	+	2187	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	25	-1	25	1	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCTTATCTTTTGTCCAG	NA	False	NA	19	True	AATAAA	-20	NA	122684551	122691593	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078137	chr6	-	3708	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3013.30654281765	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8916	False	NA	-19	True	AATAAA	-14	NA	122719478	122704782	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_122707090_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078141	chr6	-	3724	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3007.53043764038	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8914	False	NA	-19	True	AATAAA	-14	NA	122719480	122704782	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713533_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078144	chr6	-	3722	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	2952.84932075972	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8916	False	NA	-19	True	AATAAA	-14	NA	122719478	122704782	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717342_122717440_122719334
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078168	chr6	-	3733	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-255	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_10	3639.74799814493	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATGTCACAAGCT	1114	False	NA	-21	True	AATAAA	-12	NA	122778854	122704784	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122774760_122774839_122778771
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078183	chr6	+	2420	8	FSM	ENSMUSG00000030327.9	ENSMUST00000032477.6	2476	8	58	-2	-17	2	multi-exon	FALSE	canonical	3	520	junction_7	29.158959137102	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTCATCTTTTAGT	846	False	NA	11	True	ATTAAA	-17	NA	122851490	122865902	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_122851623_122857371_122857473_122857616_122857722_122858459_122858542_122859226_122859336_122859772_122859957_122863710_122863814_122864298
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078187	chr6	+	2413	8	NNC	ENSMUSG00000030327.9	novel	2476	8	NA	NA	-6	2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	194.780357724032	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTCATCTTTTAGT	857	False	NA	11	True	ATTAAA	-17	NA	122851501	122865902	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_+_122851623_122857371_122857477_122857616_122857722_122858459_122858542_122859226_122859336_122859772_122859957_122863710_122863814_122864298
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078223	chr6	+	2231	13	FSM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	54	-4	54	4	multi-exon	TRUE	canonical	3	738	junction_2	58.4776785524946	448	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACAGTGTTGTCTCCCCA	NA	False	NA	NA	False	AATAAA	-29	NA	124640043	124681385	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078292	chr6	-	3142	20	FSM	ENSMUSG00000038429.11	ENSMUST00000122110.8	3076	20	-42	-24	7	5	multi-exon	FALSE	canonical	3	759	junction_16	54.5472424788812	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTTCTTTGGGGGAGAC	7863	False	NA	-3	True	AATAAA	-20	NA	124806440	124791976	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078306	chr6	-	3157	20	FSM	ENSMUSG00000038429.11	ENSMUST00000047510.10	3213	20	43	13	-6	6	multi-exon	FALSE	canonical	3	25	junction_5	195.368477767687	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGGGGCTGACTGGTTT	7899	False	NA	-21	True	AATAAA	-2	NA	124806404	124791994	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795437_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078322	chr6	+	1010	6	NNC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	-4	-254	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	398.212706979574	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1358	False	NA	29	True	ATTAAA	-16	NA	124807193	124810241	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_+_124807237_124807465_124807614_124808328_124808456_124809108_124809403_124809528_124809633_124809947
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078326	chr6	-	2752	15	FSM	ENSMUSG00000023191.10	ENSMUST00000023958.10	2850	15	27	71	4	46	multi-exon	FALSE	canonical	1	4	junction_14	4.42396073348629	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACAGAGGAGACAGTCCC	5510	False	NA	NA	False	AAGAAA	-6	NA	124834688	124818122	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_124818803_124819034_124819176_124821978_124822055_124822164_124822283_124822470_124822622_124822904_124823007_124827588_124827714_124827880_124827949_124828041_124828095_124830013_124830104_124831273_124831411_124831810_124831943_124832043_124832240_124832906_124833060_124834158
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078335	chr6	-	1168	5	NNC	ENSMUSG00000030122.13	novel	1149	5	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	281.300995376838	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTCTCCTGCTTTCCCGC	NA	False	NA	-6	True	AATAAA	-26	NA	124894931	124890643	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_124891196_124891370_124891430_124891597_124891674_124891880_124891953_124894522
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078342	chr6	+	1702	8	ISM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	-46	-4	0	4	intron_retention	FALSE	canonical	3	3577	junction_4	212.973122765311	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTGGCTGTACTTTTGC	NA	False	NA	31	True	AATAAA	-21	NA	124908348	124913112	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078343	chr6	+	1546	9	FSM	ENSMUSG00000030120.15	ENSMUST00000032214.14	1451	9	-90	-5	0	4	multi-exon	FALSE	canonical	3	152	junction_8	1260.71298651795	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTGGCTGTACTTTTGC	NA	False	NA	31	True	AATAAA	-21	NA	124908348	124913112	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912564
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078344	chr6	+	1525	9	FSM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	-46	-4	0	4	multi-exon	FALSE	canonical	3	3449	junction_8	252.103029533562	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTGGCTGTACTTTTGC	NA	False	NA	31	True	AATAAA	-21	NA	124908348	124913112	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912585
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078456	chr6	+	2635	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-30	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	279.043286168214	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGTTGTGTTTTTTGAG	5407	False	NA	26	True	AATATA	-18	NA	125108841	125121717	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110770_125111509_125111695_125113875_125113932_125114017_125114190_125114281_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078508	chr6	-	1370	7	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	2	245	junction_5	3903.40606251629	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCTTGGTTTTAATGCG	NA	False	NA	-14	True	AATAAA	-16	NA	125142568	125138814	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142117_125142275_125142514
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078563	chr6	+	2173	10	FSM	ENSMUSG00000030341.18	ENSMUST00000032491.15	2156	10	-18	1	-18	-1	multi-exon	TRUE	canonical	3	24	junction_1	4.54062594260057	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCTGACCCTGGAAAGAGT	3758	False	NA	14	True	AATACA	-19	NA	125326667	125339446	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_125327026_125333787_125333942_125334275_125334405_125334683_125334834_125335016_125335096_125337459_125337537_125337672_125337787_125338054_125338084_125338261_125338548_125338649
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078574	chr6	+	183	1	Intergenic	novelGene_316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGGAGGGAGATTGCAAA	NA	False	NA	34	True	NA	NA	NA	125389666	125389849	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_+_125389700_125389800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078601	chr6	-	2765	1	NIC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	67	-29844	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATTGAGAAAGAAAACATC	NA	False	NA	NA	False	NA	NA	NA	125471687	125468922	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_125468900_125471700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078658	chr6	+	662	1	FSM	ENSMUSG00000053173.13	ENSMUST00000118863.2	567	1	-22	-73	-22	73	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGAAAGAGAAAGAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	128290297	128290959	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_128290300_128291000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078687	chr6	-	187	1	Intergenic	novelGene_317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTACTTATTTTTTAAAAA	NA	False	NA	-2	True	AATACA	-6	NA	128365591	128365404	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_-_128365400_128365600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078692	chr6	-	2319	12	FSM	ENSMUSG00000001518.13	ENSMUST00000001559.11	2320	12	1	0	0	0	multi-exon	FALSE	canonical	3	237	junction_3	19.6628609101919	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCTCTCCAATCTGGAC	NA	False	NA	0	True	AATAAA	-24	NA	128401893	128386406	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078711	chr6	-	986	3	ISM	ENSMUSG00000001518.13	ENSMUST00000203853.3	724	7	-9	2606	-3	17	5prime_fragment	FALSE	canonical	3	279	junction_2	3	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATGACCTCTAAGAATAGA	NA	False	NA	NA	False	NA	NA	NA	128401884	128392575	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr6_-_128393262_128394579_128394676_128401680
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078729	chr6	+	2280	1	FSM	ENSMUSG00000037827.6	ENSMUST00000036712.6	1479	1	-74	-727	-74	727	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGACTCCACCTAAGATT	NA	False	NA	NA	False	NA	NA	NA	128621801	128624081	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_128621800_128624100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078746	chr6	-	1818	10	FSM	ENSMUSG00000030189.16	ENSMUST00000032309.13	1853	10	35	0	35	0	multi-exon	FALSE	canonical	3	2076	junction_5	391.631661162235	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTGTAACTAGTGTGTA	-6	True	NA	-9	True	AATAAA	-21	NA	131365366	131341817	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_131342369_131344727_131344827_131345351_131345524_131347285_131347378_131352936_131353144_131356320_131356444_131357838_131357929_131360463_131360498_131361465_131361530_131364980
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078756	chr6	+	2179	6	FSM	ENSMUSG00000030200.14	ENSMUST00000111960.2	1578	6	25	-626	-12	5	multi-exon	FALSE	canonical	3	57	junction_3	10	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTGCCTGTAACCCAAGC	NA	False	NA	18	True	AATAAA	-30	NA	134391415	134415704	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_134391599_134400573_134401026_134404258_134404424_134407028_134407100_134409108_134409376_134414663
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078762	chr6	+	197	1	Intergenic	novelGene_318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCAGAGCCCGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	134571184	134571381	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_+_134571200_134571400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078771	chr6	-	5199	7	FSM	ENSMUSG00000030203.18	ENSMUST00000100857.10	5104	7	-95	0	-95	0	multi-exon	FALSE	canonical	3	50	junction_6	14.7309198626562	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTGAGACGTGGCT	NA	False	NA	-3	True	AATAAA	-24	NA	134769683	134692435	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_134696015_134697456_134697581_134702798_134702959_134716774_134716939_134735581_134735721_134737808_134738398_134769239
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078813	chr6	+	2103	4	FSM	ENSMUSG00000046733.8	ENSMUST00000050104.8	2083	4	-20	0	-20	0	multi-exon	FALSE	canonical	3	121	junction_1	5.71547606649408	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATTTATTTATTT	NA	False	NA	32	True	AATAAA	-32	NA	135042628	135061707	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_135042774_135055543_135056483_135060440_135060497_135060744
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078821	chr6	-	1067	4	FSM	ENSMUSG00000042770.9	ENSMUST00000045855.9	1058	4	-6	-3	-6	3	multi-exon	FALSE	canonical	3	260	junction_1	18.8738502225228	369	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGTTTTAAATTATTTCC	NA	False	NA	-26	True	AATACA	-23	NA	135145219	135114516	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_135115062_135129818_135130000_135132148_135132288_135145017
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078825	chr6	+	4156	13	FSM	ENSMUSG00000030207.16	ENSMUST00000111915.8	4221	13	65	0	65	0	multi-exon	TRUE	canonical	3	64	junction_6	10.7558123821495	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTGTCCTTTTCTCAT	NA	False	NA	NA	False	AATAAA	-20	NA	135175039	135213240	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_135175100_135186030_135186430_135188832_135188932_135193883_135194076_135195676_135195808_135202137_135202286_135202653_135202796_135203847_135203992_135204150_135204233_135205410_135205567_135208618_135208737_135210253_135210475_135210976
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078834	chr6	+	2638	5	FSM	ENSMUSG00000030208.16	ENSMUST00000032330.16	2721	5	83	0	6	0	multi-exon	FALSE	canonical	3	40	junction_2	1.6393596310755	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGACTGTTTTCTT	NA	False	NA	7	True	TATAAA	-20	NA	135340011	135360171	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_135340101_135354175_135354287_135356898_135356996_135357098_135357240_135357971
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078876	chr6	-	2662	12	NNC	ENSMUSG00000030216.13	novel	2739	12	NA	NA	-11	-2	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_11	499.168465575294	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTCTGTGTTTGTGTAA	2911	False	NA	-3	True	AATAAA	-17	NA	136805152	136790653	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805013
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078898	chr6	+	2643	10	FSM	ENSMUSG00000030224.11	ENSMUST00000064910.7	2650	10	7	0	7	0	multi-exon	FALSE	canonical	3	757	junction_9	58.2073772423402	743	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGCTTGGATTCCTGAAGT	NA	False	NA	23	True	AATAAA	-26	NA	137712082	137728930	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_137712465_137713327_137713464_137716355_137716438_137716752_137716826_137718300_137718398_137718949_137719088_137722504_137722642_137725684_137725835_137726361_137726428_137727548
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078906	chr6	+	1768	9	FSM	ENSMUSG00000030225.12	ENSMUST00000087675.9	1729	9	-37	-2	-25	2	multi-exon	FALSE	canonical	3	541	junction_6	37.3511629671688	370	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTTGTTTATTTTCGG	NA	False	NA	22	True	AATACA	-22	NA	137731518	137814894	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_137731637_137755121_137755220_137756507_137756656_137757727_137757824_137759926_137760062_137773751_137773881_137807190_137807304_137813731_137813882_137814113
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078926	chr6	+	1728	12	FSM	ENSMUSG00000041671.14	ENSMUST00000041852.8	2831	12	1	1102	1	104	multi-exon	FALSE	canonical	3	42	junction_5	7.76088944378656	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGTTTAATGACTCATTTG	NA	False	NA	14	True	AATAAA	-19	NA	142291380	142307881	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_142291534_142293283_142293365_142294248_142294369_142296787_142296917_142299250_142299325_142300350_142300512_142302208_142302310_142303105_142303239_142304124_142304238_142304761_142304885_142306584_142306723_142307479
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078943	chr6	+	2819	5	FSM	ENSMUSG00000030245.11	ENSMUST00000032372.7	2818	5	0	-1	0	1	multi-exon	FALSE	canonical	3	520	junction_3	45.9911676303179	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGTCAAGTTTATCTTT	NA	False	NA	26	True	AATAAA	-20	NA	142332946	142349585	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_142333096_142338055_142338148_142339653_142339833_142341913_142341996_142347268
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078951	chr6	-	2773	7	NIC	ENSMUSG00000030246.13	novel	1304	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	685	junction_1	70.5275753793429	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCCTGCCTTTTTCTC	NA	False	NA	-4	True	AATAAA	-19	NA	142453669	142435974	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_142436331_142438218_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078952	chr6	-	1168	7	NIC	ENSMUSG00000030246.13	novel	1304	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	308.522104376476	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCCTGCCTTTTTCTC	NA	False	NA	-4	True	AATAAA	-19	NA	142453671	142435974	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_142436331_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078959	chr6	+	1784	8	FSM	ENSMUSG00000030282.15	ENSMUST00000032419.9	1760	8	-24	0	-24	0	multi-exon	FALSE	canonical	3	681	junction_7	54.6573743554204	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGTACTGTAAGACCT	NA	False	NA	33	True	AATAAA	-22	NA	142702387	142721440	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_142702753_142710012_142710156_142710279_142710436_142713529_142713664_142716248_142716344_142716891_142717064_142717840_142717995_142720875
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078996	chr6	-	2566	11	FSM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	-50	5317	-50	6	multi-exon	FALSE	canonical	3	243	junction_10	1157.84085262181	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGATTTGAATCTTAATC	NA	False	NA	-18	True	AATAAA	-22	NA	144994588	144944877	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144994288
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000078998	chr6	-	2482	11	NIC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	6	6	combination_of_known_junctions	FALSE	canonical	3	210	junction_10	1167.49801284627	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGATTTGAATCTTAATC	NA	False	NA	-18	True	AATAAA	-22	NA	144993381	144944877	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144993165
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079011	chr6	-	2379	11	NNC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	3149	5	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_10	1224.34884326323	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	9870	False	NA	-19	True	AATAAA	-21	NA	145018761	144944878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145018647
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079017	chr6	-	2567	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	86	5	at_least_one_novel_splicesite	FALSE	canonical	3	123	junction_11	1507.73835882678	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8571	False	NA	-19	True	AATAAA	-21	NA	145021824	144944878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145002586_145002679_145021614
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079018	chr6	-	2403	10	NIC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	86	5	combination_of_known_splicesites	FALSE	canonical	3	151	junction_9	1239.05241571488	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8571	False	NA	-19	True	AATAAA	-21	NA	145021824	144944878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_145021614
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079070	chr6	+	1513	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	260	2	260	-2	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATTTGCTTCCCTGTGTG	NA	False	NA	14	True	AATAAA	-34	NA	145561742	145567203	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079076	chr6	-	3016	18	FSM	ENSMUSG00000040250.15	ENSMUST00000032427.15	3059	18	43	0	-12	0	multi-exon	FALSE	canonical	3	82	junction_2	56.6296167637544	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	-2	True	AATAAA	-26	NA	146479290	146451129	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079115	chr6	+	1117	1	FSM	ENSMUSG00000030291.13	ENSMUST00000203416.2	1395	1	0	278	0	-278	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCCAGTAATCAAAATCT	NA	False	NA	NA	False	NA	NA	NA	146544076	146545193	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_146544100_146545200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079118	chr6	+	2329	14	NNC	ENSMUSG00000001630.14	novel	4550	14	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	43.7078791320839	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTGATCAGTCAATGGAC	NA	False	NA	11	True	ATTAAA	-21	NA	146626461	146678054	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr6_+_146626546_146659958_146660104_146661618_146661671_146667692_146667816_146668235_146668320_146668916_146669041_146669830_146669990_146670331_146670435_146670592_146670655_146673079_146673198_146673595_146673720_146674815_146674912_146676897_146676990_146677091
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079155	chr6	+	2465	13	FSM	ENSMUSG00000030301.18	ENSMUST00000032441.14	2459	13	-5	-1	-5	1	multi-exon	FALSE	canonical	3	65	junction_1	9.07683253612673	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATTGTCATGTTTTTGT	NA	False	NA	18	True	AATAAA	-19	NA	147377363	147534111	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_+_147377558_147409281_147409326_147412321_147412401_147435526_147435688_147437085_147437290_147438873_147438979_147464132_147464211_147476970_147477079_147491884_147491978_147492066_147492136_147493536_147493714_147508379_147508494_147533072
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079194	chr6	-	2983	18	FSM	ENSMUSG00000030309.17	ENSMUST00000072324.12	2952	18	-32	1	-20	-1	multi-exon	FALSE	canonical	3	19	junction_10	17.2566621205624	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTCCAGTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-12	NA	148797680	148743991	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079223	chr6	+	247	2	Intergenic	novelGene_319	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	40	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGGCTCAAGATCTTCAA	NA	False	NA	NA	False	NA	NA	NA	149126968	149127268	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr6_+_149127169_149127221
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079246	chr7	-	3346	12	FSM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	103	0	5	0	multi-exon	FALSE	canonical	3	117	junction_11	40.7771610034849	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9609	False	NA	87	True	NA	NA	NA	3218926	3204497	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079254	chr7	+	924	1	FSM	ENSMUSG00000107470.3	ENSMUST00000203929.3	795	1	-44	-85	-44	85	mono-exon	FALSE	NA	NA	NA	NA	NA	1789	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGATTAAAATTTTTTTTT	9983	False	NA	NA	False	AATAAA	-30	NA	3230797	3231721	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_3230800_3231700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079257	chr7	-	3104	2	Fusion	ENSMUSG00000106340.3_ENSMUSG00000078817.5	novel	6928	10	NA	NA	-2320	806	multi-exon	FALSE	canonical	0	0	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGTGGGGGAGGCTCTAGG	NA	False	NA	NA	False	NA	NA	NA	3269689	3266505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr7_-_3268642_3268721
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079261	chr7	+	3182	1	FSM	ENSMUSG00000077903.3	ENSMUST00000104710.3	84	1	-2807	-291	-2807	291	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGCTTTCTCAGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	3266507	3269689	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_3266500_3269700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079325	chr7	-	1149	6	FSM	ENSMUSG00000006335.17	ENSMUST00000108641.10	1166	6	17	0	17	0	multi-exon	FALSE	canonical	3	150	junction_1	47.3142684610044	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632911	3623322	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_3623474_3623745_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079338	chr7	+	1952	14	NIC	ENSMUSG00000008373.17	novel	3144	14	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	241.003081322834	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGGTGTGAGTGATTAT	2999	False	NA	14	True	ATTAAA	-22	NA	3633049	3644228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_3633187_3633556_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641629_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079340	chr7	+	2927	18	FSM	ENSMUSG00000035632.17	ENSMUST00000038913.16	2822	18	-105	0	-21	0	multi-exon	FALSE	canonical	3	860	junction_1	78.9623448430591	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCCTCTCCTATCCC	2707	False	NA	NA	False	AATAAA	-23	NA	3648245	3664108	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079401	chr7	+	764	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	-8	-5	-8	5	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	5276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTGCCTCTGTAGTGAG	1256	False	NA	8	True	AATAAA	-23	NA	3706983	3709901	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079414	chr7	+	707	5	NNC	ENSMUSG00000006333.15	novel	751	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6014.33381597663	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGGTGTGCCTCTGT	1309	False	NA	2	True	AATAAA	-17	NA	3707036	3709895	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_3707064_3707325_3707448_3707644_3707770_3708731_3708919_3709649
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079424	chr7	+	2598	2	ISM	ENSMUSG00000006333.15	ENSMUST00000108623.8	1347	5	0	-2	0	0	intron_retention	FALSE	canonical	3	8457	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1309	False	NA	3	True	AATAAA	-18	NA	3707036	3709896	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_3707064_3707325
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079477	chr7	+	2911	1	Intergenic	novelGene_320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTAAAACTTTACCTGCT	NA	False	NA	NA	False	NA	NA	NA	4307298	4310209	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_4307300_4310200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079479	chr7	-	3034	7	FSM	ENSMUSG00000008435.16	ENSMUST00000008579.14	3034	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	6.10100173924104	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATTTGTCATTGTCCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	4448648	4428665	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201_4447321_4448445
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079488	chr7	-	2997	22	FSM	ENSMUSG00000019254.17	ENSMUST00000013886.9	2983	22	-13	-1	-13	1	multi-exon	FALSE	canonical	3	198	junction_16	25.6093980765123	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTGTCTCCTGATTGT	9928	False	NA	-2	True	AATAAA	-18	NA	4504692	4484517	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_4485158_4485235_4485287_4485377_4485429_4485582_4485688_4485789_4485893_4485971_4486013_4486101_4486185_4486339_4486401_4486472_4486557_4486641_4486733_4486939_4487072_4487448_4487517_4487617_4487771_4488009_4488084_4488187_4488316_4488387_4488462_4489356_4489432_4489509_4489655_4492731_4492892_4500215_4500335_4500414_4500546_4504264
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079528	chr7	-	1523	8	FSM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	76	-6	2	6	multi-exon	FALSE	canonical	3	115	junction_7	148.934720667842	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTTGCATTGTTTTT	NA	False	NA	-1	True	AATAAA	-22	NA	4687991	4663513	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687569_4687892
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079545	chr7	+	2240	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108583.9	2177	9	-60	-3	10	3	multi-exon	FALSE	canonical	3	456	junction_1	88.3026578025826	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTTTTTTTTTTTTTGA	593	False	NA	19	True	ATTAAA	-20	NA	4743123	4750516	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079556	chr7	+	2171	9	NNC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_6	216.601448517779	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	623	False	NA	16	True	ATTAAA	-17	NA	4743153	4750513	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748836_4748938_4749075_4749261_4749375
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079561	chr7	+	2299	9	NNC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_6	226.026789064925	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	624	False	NA	16	True	ATTAAA	-17	NA	4743154	4750513	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748707_4748938_4749075_4749261_4749375
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079563	chr7	+	2537	8	NIC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	456	junction_1	90.2970155675599	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	624	False	NA	16	True	ATTAAA	-17	NA	4743154	4750513	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_4743239_4744778_4744981_4745120_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079571	chr7	+	2194	9	NNC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	223.634991392224	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	633	False	NA	16	True	ATTAAA	-17	NA	4743163	4750513	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749258_4749375
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079594	chr7	-	570	3	FSM	ENSMUSG00000051811.15	ENSMUST00000182173.2	391	3	-24	-155	-3	0	multi-exon	FALSE	canonical	3	803	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756025	4754790	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_4755161_4755722_4755849_4755951
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079620	chr7	-	1360	4	FSM	ENSMUSG00000060860.9	ENSMUST00000079496.9	1238	4	-121	-1	-121	1	multi-exon	FALSE	canonical	3	9878	junction_1	292.246851518066	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTATGCCTGAAGTGTCT	NA	False	NA	-24	True	AATAAA	-16	NA	4815710	4811011	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_4811484_4813420_4813612_4814407_4814556_4815161
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079630	chr7	+	202	1	Intergenic	novelGene_321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGTTCTACACAACAACA	NA	False	NA	NA	False	NA	NA	NA	4906987	4907189	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_4907000_4907200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079642	chr7	-	2587	3	FSM	ENSMUSG00000061374.15	ENSMUST00000208944.2	2306	3	-62	-219	-62	3	multi-exon	FALSE	canonical	3	199	junction_2	122.5	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGTTTTTTGATCCT	4210	False	NA	-1	True	AATAAA	-17	NA	5016299	5010054	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_5012205_5015676_5016022_5016207
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079647	chr7	-	613	1	Genic_Genomic	ENSMUSG00000061374.15	novel	NA	NA	NA	NA	5568	1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTCTTGTTTTTTGATC	9840	False	NA	-3	True	AATAAA	-15	NA	5010669	5010056	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr7_-_5010100_5010700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079655	chr7	-	2612	3	FSM	ENSMUSG00000061374.15	ENSMUST00000165320.3	2653	3	41	0	-3	0	multi-exon	FALSE	canonical	2	9	junction_2	217.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	2854	False	NA	-4	True	AATAAA	-14	NA	5017655	5010057	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_5012205_5015676_5016022_5017535
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079662	chr7	+	1162	2	FSM	ENSMUSG00000051184.8	ENSMUST00000086349.5	1142	2	-14	-6	-14	5	multi-exon	FALSE	canonical	3	22	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTCAGTCATGGTG	2926	False	NA	11	True	AATAAA	-21	NA	5018454	5021492	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_5018560_5020435
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079721	chr7	+	2507	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	-9	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_2	43.5085248605051	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCCCTTAAATTC	1299	False	NA	21	True	AATAAA	-15	NA	5083224	5101177	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_5083477_5085016_5085121_5086728_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079724	chr7	+	2510	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_2	43.1135345280822	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCCCTTAAATTC	1299	False	NA	21	True	AATAAA	-15	NA	5083224	5101177	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_5083477_5085016_5085121_5086728_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079783	chr7	+	1236	7	FSM	ENSMUSG00000070837.7	ENSMUST00000208049.2	1401	7	165	0	-38	0	multi-exon	FALSE	canonical	2	56	junction_6	128.262751152988	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2876	False	NA	20	True	ATTAAA	-21	NA	6998463	7006090	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079799	chr7	-	2052	5	FSM	ENSMUSG00000062116.11	ENSMUST00000056246.8	2042	5	-10	0	-10	0	multi-exon	FALSE	canonical	3	51	junction_3	2.54950975679639	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTAATGACTCTTGAGGT	6226	False	NA	-5	True	AATAAA	-21	NA	7124497	7117688	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_7119200_7119611_7119711_7120784_7120912_7122370_7122410_7124221
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079817	chr7	-	2372	11	ISM	ENSMUSG00000000605.10	ENSMUST00000210594.2	2539	12	481	-61	-10	14	3prime_fragment	FALSE	canonical	3	23	junction_10	8.12465383877984	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTATTTGAATTTGAAAC	NA	False	NA	NA	False	NA	NA	NA	7301780	7287039	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7301690
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079828	chr7	-	2798	4	FSM	ENSMUSG00000095936.4	ENSMUST00000210521.2	1745	4	0	-1053	0	1053	multi-exon	FALSE	canonical	1	3	junction_3	9.89949493661167	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGAGTTCGGTCTCAGT	NA	False	NA	NA	False	NA	NA	NA	11044609	11039251	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_11041336_11041419_11041580_11043399_11043872_11044527
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079839	chr7	-	3694	7	FSM	ENSMUSG00000070822.6	ENSMUST00000211392.2	3709	7	12	3	12	-3	multi-exon	FALSE	canonical	3	19	junction_4	11.5854314646552	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATATTATGCCTCATTGTT	NA	False	NA	-4	True	AATAAA	-17	NA	12514569	12502021	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12506043_12507367_12507518_12508039_12509586_12514498
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079868	chr7	+	785	6	FSM	ENSMUSG00000012848.16	ENSMUST00000004554.14	761	6	-22	-2	-22	2	multi-exon	FALSE	canonical	3	14799	junction_5	1601.25238485381	9913	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTGCTTGTCTAAT	NA	False	NA	40	True	AATAAA	-26	NA	12656194	12660615	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000079920	chr7	+	3352	17	FSM	ENSMUSG00000005566.15	ENSMUST00000005705.8	3245	17	-52	-55	-52	55	multi-exon	FALSE	canonical	3	3307	junction_7	380.550172242439	9134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGACCTTACTTCCCTCTT	NA	False	NA	113	True	NA	NA	NA	12758026	12765017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_12758989_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762915_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080004	chr7	+	2984	17	NNC	ENSMUSG00000005566.15	novel	3245	17	NA	NA	256	1	at_least_one_novel_splicesite	FALSE	canonical	2	61	junction_6	993.114734056443	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTCATGCCTCAGCTGTC	NA	False	NA	56	True	AATAAA	-17	NA	12758334	12764960	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_12758989_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762337_12762482_12762590_12762706_12762807_12762915_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080009	chr7	+	2980	17	NNC	ENSMUSG00000005566.15	novel	3245	17	NA	NA	256	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1002.97976168203	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCATGCCTCAGCTGTCT	NA	False	NA	57	True	AATAAA	-18	NA	12758334	12764961	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_12758989_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762907_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080088	chr7	+	3404	28	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	-303	6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	267.791767474326	359	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGGTCTACATTGAGC	2317	False	NA	36	True	AATAAA	-24	NA	13012448	13045356	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_13012890_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080092	chr7	+	3106	28	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	347.18983947761	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	2616	False	NA	31	True	AATAAA	-19	NA	13012747	13045351	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_13012890_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023313_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080163	chr7	+	203	1	Intergenic	novelGene_322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCACTCTGTAGACCAGG	NA	False	NA	NA	False	AAGAAA	-3	NA	15983342	15983545	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_15983300_15983500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080167	chr7	-	2165	14	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	68.79796336603	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAACTGTGCTGCTAG	NA	False	NA	-5	True	ATTAAA	-17	NA	16020699	16007966	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_16008342_16009180_16009301_16009662_16010036_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080170	chr7	-	2162	14	FSM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	16	-3	0	0	multi-exon	FALSE	canonical	3	30	junction_1	66.2157134678708	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAACTGTGCTGCTAG	NA	False	NA	-5	True	ATTAAA	-17	NA	16020699	16007966	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_16008342_16009180_16009301_16009662_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080196	chr7	+	1881	4	FSM	ENSMUSG00000002083.14	ENSMUST00000002152.13	1814	4	-67	0	-67	0	multi-exon	FALSE	canonical	3	119	junction_1	49.2769948578667	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTTTTTGTTAGCTTTA	NA	False	NA	26	True	AATAAA	-19	NA	16043473	16052130	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_16043787_16046050_16046340_16047551_16047743_16051042
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080209	chr7	-	1953	9	FSM	ENSMUSG00000052833.10	ENSMUST00000094815.5	1875	9	-77	-1	-56	1	multi-exon	FALSE	canonical	3	2941	junction_6	113.453115316416	422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTTGTCTCCTCTGTTTT	NA	False	NA	-3	True	AATAAA	-18	NA	16121787	16060973	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080222	chr7	+	468	1	Intergenic	novelGene_323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTCGATATCGATCTATGT	3851	False	NA	NA	False	NA	NA	NA	16134204	16134672	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_16134200_16134700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080233	chr7	+	719	3	FSM	ENSMUSG00000019158.10	ENSMUST00000209536.2	699	3	-18	-2	-18	2	multi-exon	FALSE	canonical	3	42	junction_1	359.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCTGAGTGATAGCTCCT	NA	False	NA	22	True	ATTAAA	-23	NA	16186869	16189421	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_16187096_16187981_16188139_16189085
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080239	chr7	+	843	5	FSM	ENSMUSG00000008036.12	ENSMUST00000086112.8	836	5	-2	-5	-2	5	multi-exon	FALSE	canonical	3	580	junction_2	14.0423466699836	265	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGAGCCCTCATCTGTC	NA	False	NA	24	True	AATAAA	-24	NA	16472332	16483224	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_16472464_16477143_16477294_16481185_16481300_16482613_16482674_16482836
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080241	chr7	+	3312	9	FSM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	-16	-532	-16	532	multi-exon	FALSE	canonical	3	1461	junction_5	112.684293492927	6190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGACAGCTCATGGGGTAC	NA	False	NA	NA	False	NA	NA	NA	16515248	16532731	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080247	chr7	+	2741	9	NNC	ENSMUSG00000001918.18	novel	2764	9	NA	NA	4	-16	at_least_one_novel_splicesite	FALSE	canonical	2	63	junction_5	532.872815501035	130	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCTGAGTAATACCAGGT	NA	False	NA	57	True	AATAAA	-31	NA	16515268	16532183	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523860_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080271	chr7	+	2699	9	NNC	ENSMUSG00000001918.18	novel	2764	9	NA	NA	1	-31	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	547.349280053423	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCATGGCCCTAGAGTC	NA	False	NA	42	True	AATAAA	-16	NA	16515293	16532168	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_16516396_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080274	chr7	+	2788	10	NNC	ENSMUSG00000001918.18	novel	2764	9	NA	NA	1	-30	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	649.005468979601	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCATGGCCCTAGAGTCT	NA	False	NA	43	True	AATAAA	-17	NA	16515293	16532169	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_16516401_16516480_16516564_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080275	chr7	+	2003	3	ISM	ENSMUSG00000001918.18	ENSMUST00000206444.2	475	4	-1029	-22	1	22	intron_retention	FALSE	canonical	3	1546	junction_2	58.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGCAGGGCGTGGTGGCG	NA	False	NA	NA	False	NA	NA	NA	16515293	16521126	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_16516401_16519600_16519644_16520273
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080276	chr7	+	1611	5	NNC	ENSMUSG00000001918.18	novel	475	4	NA	NA	1	24	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	727.96956495447	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAGGGCGTGGTGGCGCA	NA	False	NA	NA	False	NA	NA	NA	16515293	16521128	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_16516401_16516480_16516564_16519600_16519644_16520273_16520319_16520795
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080277	chr7	+	2543	8	NIC	ENSMUSG00000001918.18	novel	2764	9	NA	NA	1	-31	combination_of_known_splicesites	FALSE	canonical	3	15	junction_4	583.012094249181	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCATGGCCCTAGAGTC	NA	False	NA	42	True	AATAAA	-16	NA	16515293	16532168	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080279	chr7	+	4042	2	NNC	ENSMUSG00000001918.18	novel	475	4	NA	NA	1	-1678	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGGTGGAGTTGTATGTG	NA	False	NA	NA	False	NA	NA	NA	16515293	16519415	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_16516401_16516480
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080281	chr7	+	3264	9	NNC	ENSMUSG00000001918.18	novel	2764	9	NA	NA	1	-31	intron_retention	FALSE	canonical	3	57	junction_1	682.108495768818	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCATGGCCCTAGAGTC	NA	False	NA	42	True	AATAAA	-16	NA	16515293	16532168	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_16516401_16516480_16516564_16519600_16519644_16520273_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080284	chr7	+	2633	2	ISM	ENSMUSG00000001918.18	ENSMUST00000206444.2	475	4	-1029	-22	1	22	intron_retention	FALSE	canonical	3	1663	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGCAGGGCGTGGTGGCG	NA	False	NA	NA	False	NA	NA	NA	16515293	16521126	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_16516401_16519600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080289	chr7	+	2782	8	FSM	ENSMUSG00000001918.18	ENSMUST00000127401.8	2807	8	1	24	1	-24	multi-exon	FALSE	canonical	3	1461	junction_5	120.463052172753	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCCTAGAGTCTGAGTAA	NA	False	NA	49	True	AATAAA	-23	NA	16515293	16532175	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16530084_16531426
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080293	chr7	+	2858	9	NNC	ENSMUSG00000001918.18	novel	2807	8	NA	NA	1	-31	intron_retention	FALSE	canonical	3	57	junction_1	676.027539657224	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCATGGCCCTAGAGTC	NA	False	NA	42	True	AATAAA	-16	NA	16515293	16532168	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_16516401_16516480_16516564_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16530084_16531426
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080337	chr7	+	4122	1	NIC	ENSMUSG00000001918.18	novel	2764	9	NA	NA	1	-1678	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGGTGGAGTTGTATGTG	NA	False	NA	NA	False	NA	NA	NA	16515293	16519415	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_16515300_16519400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080352	chr7	-	2799	3	NIC	ENSMUSG00000048920.9	novel	2827	3	NA	NA	0	-25	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	12.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGCCGTTTGTTTCCTTG	NA	False	NA	NA	False	TTTAAA	-21	NA	16550657	16543195	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_16545902_16548988_16549049_16550624
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080362	chr7	+	3098	18	FSM	ENSMUSG00000030374.16	ENSMUST00000108495.9	3082	18	-12	-4	-12	0	multi-exon	FALSE	canonical	3	350	junction_8	55.9168933502007	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTTTCCAGGCCATCTG	NA	False	NA	16	True	AATAAA	-16	NA	16550229	16574856	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_16550560_16556420_16556525_16556930_16557005_16558063_16558143_16560388_16560587_16562599_16562742_16564250_16564411_16564949_16565064_16565410_16565506_16566850_16567027_16567102_16567151_16567799_16567922_16571486_16571658_16571773_16571915_16572194_16572294_16572487_16572575_16573665_16573898_16574130
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080393	chr7	-	2102	13	FSM	ENSMUSG00000003099.12	ENSMUST00000003183.12	2072	13	-25	-5	-17	5	multi-exon	FALSE	canonical	3	1050	junction_5	57.0079794609686	2833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGACGTGTGTCCACCACG	NA	False	NA	2	True	AATAAA	-42	NA	16761866	16738559	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080429	chr7	-	2366	11	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-24	-12	intron_retention	FALSE	canonical	3	1078	junction_5	54.9235832771315	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATCTCAAACCCACCTC	NA	False	NA	-15	True	AATAAA	-25	NA	16761758	16738576	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16741172_16741650_16741757_16742538_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080430	chr7	-	3039	11	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-24	-12	intron_retention	FALSE	canonical	3	1050	junction_5	59.6945558656734	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATCTCAAACCCACCTC	NA	False	NA	-15	True	AATAAA	-25	NA	16761758	16738576	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080431	chr7	-	2034	13	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	0	-12	combination_of_known_junctions	FALSE	canonical	2	21	junction_8	312.334878598098	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATCTCAAACCCACCTC	NA	False	NA	-15	True	AATAAA	-25	NA	16761819	16738576	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742634_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080445	chr7	-	2018	14	FSM	ENSMUSG00000074358.10	ENSMUST00000098780.10	2022	14	5	-1	5	1	multi-exon	TRUE	canonical	3	126	junction_7	27.4902887640592	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTAGTGTGTGATTCAAG	2765	False	NA	0	True	AATAAA	-19	NA	18644335	18624806	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627691_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080457	chr7	-	2009	14	NIC	ENSMUSG00000074358.10	novel	2022	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_7	38.5657050949086	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2761	False	NA	-1	True	AATAAA	-18	NA	18644339	18624807	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080495	chr7	+	210	1	Intergenic	novelGene_324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCCTCAGCTGATGGCA	NA	False	NA	NA	False	NA	NA	NA	18805912	18806122	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_18805900_18806100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080499	chr7	+	2956	2	FSM	ENSMUSG00000050428.8	ENSMUST00000053109.5	4873	2	0	1917	0	443	multi-exon	FALSE	canonical	3	58	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCAGCCTGGCGTGTGTG	9337	False	NA	27	True	TATAAA	-20	NA	18853783	18872180	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_18853862_18869302
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080529	chr7	+	2363	19	NIC	ENSMUSG00000040811.16	novel	2255	19	NA	NA	-9	1	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	28.4707452191426	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCTGGTCTATTT	NA	False	NA	26	True	AATACA	-18	NA	18915119	18940408	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_18915281_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080560	chr7	-	2350	14	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	-741	0	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_13	385.780420115354	44	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19006483	18990853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438_19005656_19006261
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080562	chr7	-	2259	13	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	3	243	junction_7	341.113250988583	55	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005789	18990853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994604_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080563	chr7	-	2212	13	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	405.765831141833	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995982_18998329_18998496_18998578_18998751_19005438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080567	chr7	-	2212	13	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	15	junction_6	400.75820501755	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993390_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080568	chr7	-	2211	13	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_9	403.821011987022	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995135_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080569	chr7	-	2213	13	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	403.357463121182	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993342_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080571	chr7	-	1773	11	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	142	junction_8	516.459252990979	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994604_18994748_18994796_18998450_18998496_18998578_18998751_19005438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080572	chr7	-	2325	12	NIC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	1236	junction_8	113.43276306049	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080573	chr7	-	2211	13	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	399.834653325597	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998747_19005438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080577	chr7	-	2197	14	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	-905	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_13	383.997118455658	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19006647	18990853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438_19005656_19006578
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080587	chr7	-	2357	12	NIC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	1236	junction_8	111.514221010611	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080621	chr7	-	2424	12	NIC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	-3	intron_retention	FALSE	canonical	3	1236	junction_8	118.52509585361	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTCTCTGGAGTACTTT	NA	False	NA	NA	False	AATAAA	-21	NA	19005742	18990856	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080638	chr7	+	1112	1	Antisense	novelGene_ENSMUSG00000030402.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTACAGGTATAACACATT	8759	False	NA	3	True	AATAAA	-21	NA	19013127	19014239	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr7_+_19013100_19014200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080641	chr7	+	1967	10	FSM	ENSMUSG00000030401.17	ENSMUST00000032559.17	1990	10	23	0	12	0	multi-exon	FALSE	canonical	3	51	junction_4	11.5662343819316	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTCTGTGTTTTAAAG	NA	False	NA	12	True	AATAAA	-20	NA	19016571	19030085	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_19016791_19020459_19020505_19020607_19021079_19021171_19021436_19027000_19027209_19027527_19027667_19027772_19027843_19028343_19028391_19029375_19029435_19029640
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080647	chr7	+	2274	9	NIC	ENSMUSG00000030401.17	novel	1990	10	NA	NA	24	0	intron_retention	FALSE	canonical	3	51	junction_4	11.6397755562554	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTCTGTGTTTTAAAG	NA	False	NA	12	True	AATAAA	-20	NA	19016583	19030085	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_19016791_19020459_19020505_19020607_19021079_19021171_19021436_19027000_19027667_19027772_19027843_19028343_19028391_19029375_19029435_19029640
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080659	chr7	+	965	9	ISM	ENSMUSG00000003549.10	ENSMUST00000003645.9	1375	10	819	0	437	0	3prime_fragment	TRUE	canonical	3	315	junction_8	39.8959584419274	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGGCTCTGCGTGTTT	1530	False	NA	15	True	AATAAA	-20	NA	19079521	19090449	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080675	chr7	+	3574	23	FSM	ENSMUSG00000030400.18	ENSMUST00000062831.16	3578	23	7	-3	-1	3	multi-exon	TRUE	canonical	3	88	junction_1	20.1272809394744	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTTGCTTCTGATATTTT	NA	False	NA	16	True	AATAAA	-24	NA	19115941	19129622	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_19115985_19116203_19116304_19117868_19117947_19118023_19118087_19118226_19118341_19119547_19119665_19119754_19119872_19120631_19120756_19120856_19120954_19121037_19121172_19121253_19121423_19122064_19122184_19124031_19124102_19124173_19124244_19124323_19124426_19125451_19125516_19125889_19126012_19127173_19127267_19127357_19127431_19127554_19127626_19127700_19127845_19127963_19128108_19128276
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080700	chr7	+	803	6	FSM	ENSMUSG00000002043.18	ENSMUST00000002112.15	785	6	-18	0	-16	0	multi-exon	FALSE	canonical	3	436	junction_1	62.2009646227452	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	489	False	NA	21	True	AGTAAA	-22	NA	19242618	19250070	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249770
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080710	chr7	-	3207	13	FSM	ENSMUSG00000051403.10	ENSMUST00000058444.10	3816	13	615	-6	615	6	multi-exon	FALSE	canonical	3	79	junction_4	17.5752351019521	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTTTCCTGCTGGGCG	8129	False	NA	0	True	AATAAA	-21	NA	19296386	19264718	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_19265352_19265431_19265519_19265708_19266451_19266571_19266739_19266842_19266985_19267888_19268002_19268295_19268452_19268531_19268683_19268913_19269034_19269415_19269517_19269633_19269680_19271294_19271393_19295735
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080717	chr7	-	3199	11	NIC	ENSMUSG00000051403.10	novel	3816	13	NA	NA	842	0	intron_retention	FALSE	canonical	3	100	junction_7	14.6574213284602	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGCCTCTGTTTCCTGC	8356	False	NA	-6	True	AATAAA	-15	NA	19296159	19264724	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_19265352_19265431_19265519_19265708_19266985_19267888_19268002_19268295_19268452_19268531_19268683_19268913_19269034_19269415_19269517_19269633_19269680_19271294_19271393_19295735
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080775	chr7	-	2225	11	FSM	ENSMUSG00000002983.18	ENSMUST00000049912.15	2200	11	-24	-1	-24	1	multi-exon	FALSE	canonical	3	48	junction_10	60.3088716525189	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGTCTTCTTTCTTCTTT	NA	False	NA	0	True	AATAAA	-21	NA	19363387	19340140	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361847_19361896_19363115
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080804	chr7	-	2490	14	FSM	ENSMUSG00000002981.11	ENSMUST00000055242.11	4143	14	-9	1662	-9	16	multi-exon	FALSE	canonical	3	1363	junction_5	136.704319631521	316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTCTGCCTTCCTTGTC	5139	False	NA	-1	True	AATAAA	-37	NA	19398967	19367157	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_19367888_19367980_19368149_19368802_19368939_19369232_19369329_19369585_19369777_19371002_19371097_19371393_19371639_19372041_19372163_19372856_19372943_19376976_19377095_19379766_19379926_19380640_19380765_19389642_19389756_19398858
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080841	chr7	-	1183	5	FSM	ENSMUSG00000002985.17	ENSMUST00000172983.8	817	5	-16	-350	-2	2	multi-exon	FALSE	canonical	3	31	junction_4	5193.26072906031	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAGTCTCTGTGAGTGA	NA	False	NA	-28	True	AATAAA	-16	NA	19432979	19430194	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432328_19432399_19432935
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080844	chr7	-	1258	5	NNC	ENSMUSG00000002985.17	novel	817	5	NA	NA	-2	2	intron_retention	FALSE	canonical	3	30	junction_4	5193.51332794092	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAGTCTCTGTGAGTGA	NA	False	NA	-28	True	AATAAA	-16	NA	19432979	19430194	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_19431029_19431403_19431573_19432112_19432179_19432328_19432474_19432935
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080869	chr7	-	1603	10	NNC	ENSMUSG00000002984.18	novel	1577	10	NA	NA	-20	-5	at_least_one_novel_splicesite	TRUE	canonical	3	56	junction_9	883.01404432157	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATCTGGGAGGCCTCGG	9861	False	NA	-18	True	NA	NA	NA	19449383	19435242	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_19435783_19436772_19436876_19436990_19437068_19437193_19437317_19444657_19444764_19444842_19444945_19447593_19447687_19448217_19448286_19448905_19449185_19449271
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080896	chr7	-	1995	7	NNC	ENSMUSG00000062300.15	novel	1955	6	NA	NA	32	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	429.864578158698	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGGGTGTTTTGTAATC	NA	False	NA	-4	True	AATAAA	-16	NA	19483426	19458085	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_19458795_19463364_19463437_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080908	chr7	-	2436	15	FSM	ENSMUSG00000002980.15	ENSMUST00000003061.14	2429	15	-3	-4	-3	4	multi-exon	TRUE	canonical	3	510	junction_11	49.5145824737624	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCAGGTTCTCTTCTCAGG	3909	False	NA	-1	True	AATAAA	-30	NA	19504475	19490051	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_19490545_19490632_19490751_19492348_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080926	chr7	-	2282	13	ISM	ENSMUSG00000002980.15	ENSMUST00000003061.14	2429	15	46	1787	-6	-1361	5prime_fragment	FALSE	canonical	3	510	junction_9	43.4193857114026	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTACAGGCCCGATTTT	3958	False	NA	NA	False	AAAAAG	-13	NA	19504426	19491842	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_-_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080931	chr7	-	1679	12	FSM	ENSMUSG00000040525.14	ENSMUST00000043822.8	1662	12	-15	-2	-15	2	multi-exon	FALSE	canonical	2	11	junction_1	3.71283233757493	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCGTGTGTGACAGAGAC	NA	False	NA	3	True	AATAAA	-22	NA	19530749	19513640	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_19513722_19514697_19514773_19514894_19515002_19518727_19518806_19519162_19519325_19520107_19520240_19522893_19522982_19524324_19524463_19526032_19526155_19526433_19526591_19526733_19526881_19530357
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080936	chr7	-	1920	9	FSM	ENSMUSG00000053175.18	ENSMUST00000120537.8	1850	9	-70	0	-70	0	multi-exon	FALSE	canonical	3	615	junction_1	42.6314144733669	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTGCTTTCCATCTGTT	5659	False	NA	-8	True	AATAAA	-17	NA	19556765	19542386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_19542982_19543066_19543185_19543420_19543589_19544981_19545060_19545244_19545334_19545419_19545625_19546329_19546439_19553971_19554126_19556361
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080942	chr7	-	1935	8	NIC	ENSMUSG00000053175.18	novel	1850	9	NA	NA	0	0	intron_retention	TRUE	canonical	3	678	junction_5	25.6395740039112	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTGCTTTCCATCTGTT	5729	False	NA	-8	True	AATAAA	-17	NA	19556695	19542386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_19543185_19543420_19543589_19544981_19545060_19545244_19545334_19545419_19545625_19546329_19546439_19553971_19554126_19556361
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080945	chr7	-	2171	7	NIC	ENSMUSG00000053175.18	novel	1850	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	678	junction_4	25.3223660470783	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTGCTTTCCATCTGTT	5729	False	NA	-8	True	AATAAA	-17	NA	19556695	19542386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_19543589_19544981_19545060_19545244_19545334_19545419_19545625_19546329_19546439_19553971_19554126_19556361
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080959	chr7	-	2884	8	FSM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	21	0	21	0	multi-exon	FALSE	canonical	3	90	junction_4	10.2359909243845	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATTGTCCGAGCCTTTG	9952	False	NA	-1	True	NA	NA	NA	19655064	19637502	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529_19644682_19648662_19648790_19650798_19651096_19652486_19652835_19654877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080965	chr7	+	3924	5	FSM	ENSMUSG00000057101.9	ENSMUST00000068975.6	3901	5	-27	4	-27	-4	multi-exon	FALSE	canonical	3	55	junction_2	15.0499169432924	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTCCCACTTGTTTGA	NA	False	NA	NA	False	AATAAA	-26	NA	23781321	23807134	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_23781664_23784850_23784932_23797245_23797321_23800872_23800994_23803829
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000080985	chr7	-	2148	7	FSM	ENSMUSG00000050605.18	ENSMUST00000077780.14	2480	7	324	8	-41	-8	multi-exon	FALSE	canonical	3	35	junction_1	4.81028989655394	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCGTATCATGTGGATTC	NA	False	NA	-1	True	TATAAA	-15	NA	23998776	23990471	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23996997_23997164_23997698_23997801_23998617
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081013	chr7	+	2189	9	FSM	ENSMUSG00000054793.9	ENSMUST00000068023.8	2161	9	-26	-2	-26	2	multi-exon	FALSE	canonical	3	44	junction_8	7.9912061042123	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTGGCTGTGTGTCTGT	6375	False	NA	NA	False	ATTAAA	-19	NA	24181421	24203966	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_24181588_24198580_24198728_24198937_24199091_24199348_24199484_24199900_24200066_24200156_24200248_24200989_24201163_24202090_24202220_24202936
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081039	chr7	+	2157	17	FSM	ENSMUSG00000051768.10	ENSMUST00000063249.9	2155	17	0	-2	0	0	multi-exon	FALSE	canonical	3	337	junction_4	31.1527862919194	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTTTCTCTCTTAGGAGAC	NA	False	NA	9	True	AATAAA	-21	NA	24246574	24272865	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081053	chr7	+	496	1	FSM	ENSMUSG00000091955.3	ENSMUST00000170837.3	485	1	-11	0	-11	0	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATGATTAAACTCCTGG	NA	False	NA	NA	False	AATAAA	-34	NA	24561626	24562122	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_24561600_24562100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081072	chr7	+	505	6	NNC	ENSMUSG00000040952.17	novel	593	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	10116.3226638932	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584057	24589231	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589172
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081073	chr7	+	597	7	NNC	ENSMUSG00000040952.17	novel	593	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	8918.45340509715	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584057	24589231	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_24584093_24584560_24584632_24584876_24584978_24585531_24585617_24587706_24587891_24588331_24588387_24589165
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081076	chr7	+	593	7	FSM	ENSMUSG00000040952.17	ENSMUST00000129847.8	593	7	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_3	8759.20174096298	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584057	24589231	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24585531_24585613_24587706_24587891_24588331_24588387_24589165
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081083	chr7	+	699	6	NIC	ENSMUSG00000040952.17	novel	593	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	133	junction_1	10491.1802119685	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584057	24589231	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_24584280_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081103	chr7	+	3273	29	NIC	ENSMUSG00000040940.19	novel	3214	29	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	60.0176844686597	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGTGTGTGTGAGGGCG	9862	False	NA	34	True	AATATA	-16	NA	24603769	24626017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_24603923_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616228_24616367_24617319_24617426_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081148	chr7	-	2225	11	FSM	ENSMUSG00000057177.13	ENSMUST00000071739.12	2260	11	34	1	34	-1	multi-exon	FALSE	canonical	3	276	junction_10	34.6278789416851	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTGTCTGGCTGCCTGT	NA	False	NA	-1	True	AATAAA	-20	NA	24937242	24927683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_24928356_24928889_24928998_24929275_24929466_24930029_24930126_24930209_24930308_24931059_24931167_24931258_24931390_24932998_24933110_24933252_24933337_24934977_24935166_24936802
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081169	chr7	-	1175	5	FSM	ENSMUSG00000005447.13	ENSMUST00000148150.8	859	5	-5	-311	-5	1	multi-exon	TRUE	canonical	3	385	junction_2	17.4570902500961	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTTTTCTGCTTTATGG	8598	False	NA	-1	True	ATTAAA	-16	NA	24997312	24994472	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081186	chr7	-	1719	10	NNC	ENSMUSG00000060376.8	novel	1899	9	NA	NA	231	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_9	113.260216065527	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTCCTTCGTCTCTG	9913	False	NA	-9	True	AGTAAA	-19	NA	25358175	25329370	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_25329859_25330424_25330597_25330766_25330909_25331062_25331270_25332664_25332827_25337586_25337696_25340881_25340969_25341068_25341252_25348652_25348704_25358057
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081187	chr7	-	1686	9	FSM	ENSMUSG00000060376.8	ENSMUST00000071329.8	1899	9	213	0	213	0	multi-exon	FALSE	canonical	3	232	junction_4	24.6373699895098	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTCCTTCGTCTCTG	9895	False	NA	-9	True	AGTAAA	-19	NA	25358193	25329370	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_25329859_25330424_25330597_25330766_25330909_25331062_25331270_25332664_25332827_25337586_25337696_25340881_25340969_25341068_25341252_25358057
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081191	chr7	+	1068	6	FSM	ENSMUSG00000061286.8	ENSMUST00000079634.8	1020	6	-47	-1	-47	1	multi-exon	FALSE	canonical	3	1190	junction_2	58.9528625259198	1312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGGTGTCTGGAGAGTACT	NA	False	NA	32	True	ATTAAA	-44	NA	25358541	25367458	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_25358809_25362561_25362676_25363751_25363874_25364845_25364987_25365677_25365768_25367124
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081216	chr7	-	2973	5	FSM	ENSMUSG00000002608.9	ENSMUST00000002683.3	3032	5	53	6	10	-6	multi-exon	FALSE	canonical	3	101	junction_3	5.52268050859363	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCATCCATTCATCTGTT	NA	False	NA	-9	True	ATTAAA	-18	NA	25418460	25410536	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159_25415613_25418342
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081249	chr7	-	2092	6	FSM	ENSMUSG00000058709.12	ENSMUST00000080058.11	2107	6	17	-2	17	2	multi-exon	FALSE	canonical	3	451	junction_5	57.8840219749803	619	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTATTCCTCTCTGTA	NA	False	NA	-1	True	AATAAA	-22	NA	26866210	26858080	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26866108
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081284	chr7	-	575	4	FSM	ENSMUSG00000089661.10	ENSMUST00000121848.2	572	4	0	-3	0	1	multi-exon	FALSE	canonical	3	138	junction_1	9.2736184954957	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTCTTTGGTTTTTGG	NA	False	NA	1	True	AATACA	-19	NA	26880582	26879165	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_26879260_26879593_26879705_26880124_26880259_26880346
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081324	chr7	+	2779	10	FSM	ENSMUSG00000063160.13	ENSMUST00000079258.7	2760	10	-7	-12	-7	9	multi-exon	FALSE	canonical	3	70	junction_4	11.8415464455544	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGGTGTGTGCATACGAG	NA	False	NA	21	True	AATAAA	-30	NA	26958142	26981578	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_26958387_26961592_26961678_26964300_26964441_26965979_26966055_26966151_26966227_26968203_26968345_26973379_26973570_26976051_26976358_26978928_26979052_26980178
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081362	chr7	-	2316	18	NNC	ENSMUSG00000089832.9	novel	2358	18	NA	NA	-16	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	83.2819033915889	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATAGTCTTGGTTTGTTC	NA	False	NA	-25	True	AATAAA	-20	NA	27055395	27041554	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054634_27054713_27054825_27054872_27054997_27055052_27055295
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081424	chr7	+	2686	10	FSM	ENSMUSG00000049643.16	ENSMUST00000067386.14	2701	10	15	0	15	0	multi-exon	FALSE	canonical	3	300	junction_8	25.2899238218224	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	411	False	NA	NA	False	AATAAA	-20	NA	27252672	27281524	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081482	chr7	+	3487	5	FSM	ENSMUSG00000078779.5	ENSMUST00000205701.2	3437	5	-42	-8	-42	8	multi-exon	FALSE	canonical	3	101	junction_4	40.2639727299729	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACAAGCCTAAAGGCTCA	366	False	NA	NA	False	AATAAA	-1	NA	27537989	27555871	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_27538135_27542259_27542313_27543709_27543837_27545828_27545928_27552808
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081498	chr7	+	1225	9	FSM	ENSMUSG00000046865.8	ENSMUST00000042405.8	1197	9	-20	-8	-20	8	multi-exon	FALSE	canonical	3	2081	junction_3	279.620725269069	586	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGCCTATTGCTAAGTG	8511	False	NA	8	True	ATTAAA	-22	NA	27869114	27878702	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_27869244_27873928_27874112_27874209_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081511	chr7	-	1522	11	FSM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	-6	-1	-6	1	multi-exon	FALSE	canonical	3	2125	junction_9	150.487341660354	886	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCGTGTGTGGCTCTGTG	2650	False	NA	0	True	NA	NA	NA	28011503	28004939	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081522	chr7	-	3572	29	NNC	ENSMUSG00000003435.10	novel	3640	31	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	156.353178178541	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACGAAGAGTTTTCTT	NA	False	NA	-8	True	AATAAA	-21	NA	28038206	28014315	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029998_28030071_28030794_28030955_28037776_28037861_28038119
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081569	chr7	+	2026	14	FSM	ENSMUSG00000003437.15	ENSMUST00000003529.9	2003	14	-23	0	-23	0	multi-exon	FALSE	canonical	3	164	junction_5	16.9726546514433	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTAAAGTCTCTGTTCC	546	False	NA	20	True	AATAAA	-21	NA	28092352	28098813	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095121_28095195_28095298_28095376_28095483_28095558_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081581	chr7	-	3992	12	NIC	ENSMUSG00000109336.2	novel	4391	13	NA	NA	-86	-700	intron_retention	FALSE	canonical	3	429	junction_11	37.2212504841429	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCCTGCACTATCAGCC	6514	False	NA	NA	False	NA	NA	NA	28135738	28099673	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_28101333_28103044_28103169_28103288_28103488_28104913_28105033_28105378_28105465_28105793_28106113_28106655_28106743_28106893_28107004_28107360_28107601_28113296_28113768_28122860_28123263_28135562
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081597	chr7	-	2926	10	FSM	ENSMUSG00000030602.14	ENSMUST00000108283.8	2899	10	-27	0	-27	0	multi-exon	TRUE	canonical	3	622	junction_9	35.4843036069349	474	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTATGTGTGTGGT	4569	False	NA	-3	True	ATTAAA	-21	NA	28297637	28258243	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217_28269292_28297459
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081617	chr7	+	1969	6	NIC	ENSMUSG00000037463.15	novel	1946	6	NA	NA	-20	0	combination_of_known_junctions	TRUE	canonical	3	31	junction_1	12.2637677734047	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTCATATCTTTTTCTT	8825	False	NA	NA	False	AATAAA	-19	NA	28392253	28398763	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_28392398_28392694_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397663
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081620	chr7	+	1991	7	FSM	ENSMUSG00000030598.16	ENSMUST00000032818.13	1958	7	-33	0	-33	0	multi-exon	FALSE	canonical	3	89	junction_6	22.6838170411321	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28416195	28437569	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081628	chr7	-	888	2	FSM	ENSMUSG00000045948.9	ENSMUST00000171183.2	883	2	-4	-1	-4	1	multi-exon	FALSE	canonical	3	939	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGTGCGGTGTCTGTCC	1690	False	NA	-4	True	AATAAA	-25	NA	28441199	28439064	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_28439665_28440911
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081629	chr7	-	742	3	FSM	ENSMUSG00000045948.9	ENSMUST00000056078.9	722	3	-18	-2	-18	1	multi-exon	FALSE	canonical	3	503	junction_2	218	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGTGCGGTGTCTGTCC	1626	False	NA	-4	True	AATAAA	-25	NA	28441263	28439064	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_28439665_28440911_28440980_28441189
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081642	chr7	+	3100	16	FSM	ENSMUSG00000070699.6	ENSMUST00000094632.6	1868	16	-23	-1209	-13	1209	multi-exon	TRUE	canonical	3	180	junction_5	21.0516824347446	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCATAAAACTTTCTTTAAA	255	False	NA	NA	False	NA	NA	NA	28441403	28454505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28446976_28447256_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081663	chr7	+	1107	4	ISM	ENSMUSG00000015165.17	ENSMUST00000174755.8	2426	6	-3	2217	0	272	5prime_fragment	FALSE	canonical	3	5588	junction_1	490.233277804217	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAAGACTCCAGAATGAC	NA	False	NA	NA	False	NA	NA	NA	28510361	28514144	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081670	chr7	+	271	1	ISM	ENSMUSG00000015165.17	ENSMUST00000174548.8	2679	14	13438	17	766	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGCTGGGGCTCCAAG	NA	False	NA	16	True	AATAAA	-19	NA	28521403	28521674	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_28521400_28521700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081684	chr7	-	3482	21	NNC	ENSMUSG00000054808.16	novel	3877	21	NA	NA	28	44	at_least_one_novel_splicesite	FALSE	canonical	1	15	junction_6	329.243435773593	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTAAAAACTTAAGACCTT	NA	False	NA	NA	False	AAAAAG	-31	NA	28661737	28593033	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597403_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081706	chr7	+	2765	32	FSM	ENSMUSG00000037337.12	ENSMUST00000085835.8	2724	32	-40	-1	-40	0	multi-exon	FALSE	canonical	3	103	junction_17	22.4346431975332	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGGAGGAGAGATTTTT	NA	False	NA	23	True	AATAAA	-28	NA	28682212	28702704	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_28682480_28682639_28682698_28682814_28682906_28683507_28683573_28686072_28686129_28686216_28686265_28686412_28686456_28686539_28686613_28687498_28687631_28688018_28688082_28688179_28688262_28688760_28688875_28689098_28689178_28690412_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081736	chr7	-	1176	5	NNC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	8	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	807.111013120252	69	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTATCCAGTCTGGCC	NA	False	NA	-7	True	AATAAA	-18	NA	28879969	28873609	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876623_28879701
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081788	chr7	+	2323	12	FSM	ENSMUSG00000030584.15	ENSMUST00000049977.13	2309	12	-14	0	11	0	multi-exon	TRUE	canonical	3	46	junction_7	12.1008161735527	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTCCATCTCTAACCTC	1775	False	NA	10	True	ATTAAA	-26	NA	29003386	29017013	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_29003538_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015668_29015751_29015905
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081818	chr7	-	3410	5	NIC	ENSMUSG00000062040.15	novel	3150	5	NA	NA	2	-105	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	18.1245689603919	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAAGTGTACCTGGCCT	NA	False	NA	NA	False	AGTAAA	-19	NA	29605527	29592862	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603469_29605478
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081845	chr7	-	1698	4	FSM	ENSMUSG00000078768.3	ENSMUST00000088785.6	1709	4	11	0	11	0	multi-exon	FALSE	canonical	3	90	junction_1	16.2685791225499	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTGTGTGGCAGTGTAA	9934	False	NA	2	True	AAAACA	-22	NA	29789941	29776761	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_29778044_29780515_29780643_29786524_29786585_29789712
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081866	chr7	+	443	4	FSM	ENSMUSG00000074218.4	ENSMUST00000208441.2	485	4	-6	48	-6	0	multi-exon	FALSE	canonical	3	51	junction_1	502.814964861716	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTCCAGCCTGTGTGT	5718	False	NA	24	True	AATAAA	-25	NA	29883612	29885455	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_29883765_29884509_29884597_29884699_29884785_29885336
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081902	chr7	+	877	6	FSM	ENSMUSG00000019738.16	ENSMUST00000019882.16	819	6	-58	0	-58	0	multi-exon	FALSE	canonical	3	1146	junction_5	44.9239357136037	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCCCGTGTTTATTTC	NA	False	NA	18	True	AATAAA	-18	NA	29931314	29932815	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081908	chr7	-	4728	33	NNC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	9	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_22	36.0311822419137	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCTGTCTATAAAGCC	NA	False	NA	-4	True	AATAAA	-21	NA	29979835	29939562	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960708_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081944	chr7	-	2397	17	FSM	ENSMUSG00000006651.9	ENSMUST00000006828.9	2343	17	-52	-2	-52	2	multi-exon	TRUE	canonical	3	317	junction_16	59.4064390449386	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTGTTTCTGTTGGAGA	NA	False	NA	0	True	AATAAA	-22	NA	30145012	30134404	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211_30136320_30137602_30137703_30139359_30139489_30139568_30139728_30140479_30140555_30141066_30141198_30141594_30141786_30141904_30142039_30142222_30142336_30142516_30142650_30143742_30143887_30144746
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081964	chr7	-	1022	9	FSM	ENSMUSG00000036845.13	ENSMUST00000043975.11	998	9	-19	-5	-6	5	multi-exon	FALSE	canonical	3	222	junction_2	22.8363744933385	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAAGTGCATTTATTGGG	4866	False	NA	-1	True	NA	NA	NA	30259090	30254860	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257384_30258866
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081973	chr7	+	892	8	FSM	ENSMUSG00000078765.12	ENSMUST00000043273.16	884	8	-9	1	5	0	multi-exon	FALSE	canonical	3	411	junction_1	81.3154602866678	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGGTTTCCTTCCAC	NA	False	NA	35	True	AATAAA	-23	NA	30262736	30264789	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000081985	chr7	-	1775	6	FSM	ENSMUSG00000006310.11	ENSMUST00000108151.3	1775	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	31.6771210813104	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30292367	30289105	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30292336
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082007	chr7	-	1671	10	FSM	ENSMUSG00000036733.17	ENSMUST00000042726.14	1784	10	120	-7	-53	5	multi-exon	TRUE	canonical	3	640	junction_5	133.345925331332	524	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACTTAGAAACTGTTGG	3731	False	NA	-7	True	AATAAA	-23	NA	30349622	30340418	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345268_30345343_30345410_30346984_30347060_30347155_30347241_30349008_30349145_30349362
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082016	chr7	-	2196	19	FSM	ENSMUSG00000078762.11	ENSMUST00000019697.9	2187	19	0	-9	0	4	multi-exon	FALSE	canonical	3	112	junction_13	34.9573373142001	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCAGTTTTATCAACTTT	NA	False	NA	0	True	AATAAA	-19	NA	30364419	30353131	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082035	chr7	-	2428	17	NIC	ENSMUSG00000078762.11	novel	2187	19	NA	NA	10	0	intron_retention	FALSE	canonical	3	112	junction_11	36.9805164072921	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTGCCCAGTTTTATCAA	NA	False	NA	-4	True	AATAAA	-15	NA	30364375	30353135	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357344_30357927_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082062	chr7	-	874	7	FSM	ENSMUSG00000006315.10	ENSMUST00000006478.10	870	7	0	-4	0	0	multi-exon	FALSE	canonical	3	739	junction_6	21.1850314032233	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	9257	False	NA	-12	True	AGTAAA	-18	NA	30428965	30427125	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082069	chr7	+	458	6	FSM	ENSMUSG00000074199.8	ENSMUST00000098559.3	470	6	0	12	0	0	multi-exon	FALSE	canonical	3	54	junction_5	10.9105453575887	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCCTGAATCTGTGTT	NA	False	NA	11	True	AATAAA	-16	NA	30487329	30490510	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_30487448_30488929_30488969_30489137_30489180_30489336_30489382_30489992_30490041_30490344
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082073	chr7	-	1652	2	FSM	ENSMUSG00000019429.8	ENSMUST00000094583.2	1625	2	-16	-11	-16	11	multi-exon	FALSE	canonical	3	35	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTTTCCTTATCTCCTT	7650	False	NA	NA	False	AATAAA	-24	NA	30555619	30553743	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_30555330_30555553
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082086	chr7	-	2155	10	FSM	ENSMUSG00000001247.17	ENSMUST00000001279.15	2167	10	12	0	12	0	multi-exon	FALSE	canonical	3	74	junction_7	47.1029867208513	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGCCTCTTGTTTTGCT	NA	False	NA	-3	True	AATAAA	-17	NA	30672877	30657199	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30662235_30662293_30665393_30665514_30671292_30671638_30672504
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082088	chr7	-	2094	9	FSM	ENSMUSG00000001247.17	ENSMUST00000108116.10	2071	9	-21	-2	16	0	multi-exon	TRUE	canonical	3	93	junction_6	34.291945118351	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGCCTCTTGTTTTGCT	NA	False	NA	-3	True	AATAAA	-17	NA	30672873	30657199	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30665393_30665514_30671292_30671638_30672504
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082127	chr7	-	2546	18	NNC	ENSMUSG00000001248.16	novel	3722	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	93.6617635513932	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5756	False	NA	-1	True	AATAAA	-15	NA	30850437	30829551	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835113_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30843065_30843299_30850320
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082130	chr7	-	3857	17	NNC	ENSMUSG00000001248.16	novel	3722	18	NA	NA	-24	0	intron_retention	FALSE	canonical	0	0	junction_15	93.7759963956662	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	4675	False	NA	-1	True	AATAAA	-15	NA	30851518	30829551	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30843065_30843299_30851261
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082155	chr7	-	2640	17	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	-57	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	386.788858543974	1740	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTGCCCTAGTGGGTTT	NA	False	NA	0	True	AATAAA	-27	NA	33868057	33840112	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846940_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082174	chr7	-	2578	17	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	15	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	515.047202782182	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCCTCTGTTGCCCTA	NA	False	NA	-8	True	AATAAA	-19	NA	33867985	33840120	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_33840892_33842162_33842318_33843914_33844021_33845629_33845727_33846940_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082190	chr7	+	203	1	Intergenic	novelGene_325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTCTTCCCACCAACAG	NA	False	NA	NA	False	NA	NA	NA	33859259	33859462	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_33859300_33859500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082193	chr7	+	217	1	Antisense	novelGene_ENSMUSG00000052997.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATTCATAGCAAACAGCAT	NA	False	NA	NA	False	NA	NA	NA	33863550	33863767	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr7_+_33863600_33863800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082241	chr7	+	196	1	Intergenic	novelGene_326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTATTTATTTCACCTAT	NA	False	NA	NA	False	NA	NA	NA	34055959	34056155	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_34056000_34056200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082248	chr7	-	2083	4	FSM	ENSMUSG00000060402.9	ENSMUST00000078686.8	2372	4	-2	291	-2	0	multi-exon	TRUE	canonical	1	5	junction_3	4.02768199119819	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGTCTACTCCAGGCTG	NA	False	NA	1	True	AATAAA	-20	NA	34512113	34374183	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_34375670_34376059_34376098_34447486_34447703_34511770
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082257	chr7	+	1854	15	FSM	ENSMUSG00000063931.15	ENSMUST00000075068.14	1881	15	28	-1	28	1	multi-exon	FALSE	canonical	3	282	junction_1	31.3925930429327	439	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCTGCCCATCTTCCTCT	NA	False	NA	15	True	AATAAA	-20	NA	34611831	34744134	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_34611880_34620753_34620938_34623805_34623934_34634106_34634171_34642063_34642112_34645011_34645074_34653982_34654028_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082294	chr7	-	1803	3	FSM	ENSMUSG00000030493.14	ENSMUST00000141001.2	1690	3	-96	-17	27	17	multi-exon	FALSE	canonical	3	148	junction_1	3.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAACTCAAACAATGAACAT	NA	False	NA	NA	False	AATAAA	-21	NA	35096234	35091712	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_35092517_35094399_35094802_35095637
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082295	chr7	-	1698	4	NNC	ENSMUSG00000030493.14	novel	1857	4	NA	NA	27	17	intron_retention	TRUE	canonical	0	0	junction_3	68.6197250553124	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAACTCAAACAATGAACAT	NA	False	NA	NA	False	AATAAA	-21	NA	35096234	35091712	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_35092517_35094399_35094553_35094661_35094802_35095633
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082304	chr7	+	2611	19	NNC	ENSMUSG00000023072.15	novel	2825	20	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	36.9808091706169	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTTGCATGTTTATTTC	NA	False	NA	8	True	AATAAA	-18	NA	35096477	35138112	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122833_35124084_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35131942_35132033_35134898_35135069_35137752
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082311	chr7	+	2529	17	NNC	ENSMUSG00000023072.15	novel	2825	20	NA	NA	4	-2116	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	44.1628732647685	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTCTGTACTCAGTGTC	NA	False	NA	16	True	AATAAA	-22	NA	35096483	35129883	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122833_35124084_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35129339
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082315	chr7	+	1470	12	NNC	ENSMUSG00000023072.15	novel	2610	19	NA	NA	4	959	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_11	40.0712175924172	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGGTCATCCCACGTTTT	NA	False	NA	NA	False	NA	NA	NA	35096483	35121618	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120455_35121492
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082320	chr7	+	2610	19	NNC	ENSMUSG00000023072.15	novel	2610	19	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	36.9808091706169	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCATGTTTATTTCAG	NA	False	NA	10	True	AATAAA	-20	NA	35096483	35138114	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122833_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35131942_35132033_35134898_35135069_35137752
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082347	chr7	+	4296	29	FSM	ENSMUSG00000034867.17	ENSMUST00000040844.16	4284	29	-4	-8	-4	8	multi-exon	FALSE	canonical	3	207	junction_17	26.9819242214835	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATTTTTGTGTTTTGTTT	NA	False	NA	31	True	AGTAAA	-23	NA	35285664	35338659	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729_35321775_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082355	chr7	+	1883	12	FSM	ENSMUSG00000034867.17	ENSMUST00000186245.7	1926	12	31	12	4	-12	multi-exon	FALSE	canonical	3	240	junction_4	23.6388110621019	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGAGTGAATTTGAGTT	NA	False	NA	NA	False	NA	NA	NA	35285705	35308527	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082372	chr7	-	3471	11	FSM	ENSMUSG00000030421.10	ENSMUST00000085513.6	3441	11	-30	0	-6	0	multi-exon	FALSE	canonical	3	853	junction_5	45.4049556766659	252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGAGCCTGCTTTATCTA	NA	False	NA	-5	True	ATTAAA	-24	NA	37718997	37659416	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_37661123_37661890_37662135_37662817_37662958_37664655_37665005_37666745_37666915_37668804_37668863_37669030_37669123_37681035_37681172_37682294_37682374_37696111_37696147_37718534
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082401	chr7	-	2073	12	FSM	ENSMUSG00000002068.17	ENSMUST00000108023.10	2000	12	-70	-3	-70	3	multi-exon	FALSE	canonical	2	563	junction_4	98.4049652714874	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTTAACTCTGTCTA	NA	False	NA	-9	True	AATAAA	-22	NA	37807029	37797405	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37806746
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082405	chr7	-	1947	12	NNC	ENSMUSG00000002068.17	novel	2000	12	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	248.884586083756	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTCTTAACTCTGT	NA	False	NA	-12	True	AATAAA	-19	NA	37806902	37797408	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_37798063_37798412_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37806746
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082408	chr7	-	1968	12	NNC	ENSMUSG00000002068.17	novel	2000	12	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	246.29378412614	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTCTTAACTCTGT	NA	False	NA	-12	True	AATAAA	-19	NA	37806923	37797408	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799209_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37806746
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082424	chr7	-	1256	7	FSM	ENSMUSG00000030423.8	ENSMUST00000032585.8	2113	7	38	819	-12	-819	multi-exon	FALSE	canonical	3	243	junction_2	18.1567251085284	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTCAAATTCCTGTACT	NA	False	NA	-4	True	AATAAA	-20	NA	37970809	37962238	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37967020_37968325_37968379_37970570
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082463	chr7	+	891	6	FSM	ENSMUSG00000004610.5	ENSMUST00000004729.5	893	6	-12	14	-12	3	multi-exon	FALSE	canonical	3	1745	junction_1	117.194539121923	835	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTTCCTCATTCTTT	1896	False	NA	38	True	AATAAA	-21	NA	43093494	43107210	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902_43106062_43106993
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082476	chr7	+	2455	5	NIC	ENSMUSG00000055102.16	novel	2362	5	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	25.6843824142221	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCACATTCATCCATTGC	2842	False	NA	7	True	AATAAA	-21	NA	43256598	43267709	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_43256742_43259209_43259403_43261406_43261534_43261970_43262064_43265810
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082485	chr7	+	2479	3	FSM	ENSMUSG00000038888.9	ENSMUST00000038332.9	2475	3	-2	-2	-2	2	multi-exon	FALSE	canonical	3	64	junction_1	1	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTGGTCTGGTGTTTT	NA	False	NA	10	True	NA	NA	NA	43321437	43327724	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_43321500_43324527_43325071_43325850
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082508	chr7	+	1927	6	FSM	ENSMUSG00000045411.17	ENSMUST00000055858.14	1982	6	55	0	-10	0	multi-exon	FALSE	canonical	3	217	junction_1	215.342889364845	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTGCTGTTTGATTCGG	NA	False	NA	24	True	ATTAAA	-24	NA	43896200	43901743	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_43896248_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082512	chr7	+	2089	7	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_1	293.703743402921	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896200	43901739	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_43896248_43896674_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082525	chr7	+	2004	6	NNC	ENSMUSG00000045411.17	novel	1982	6	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_2	300.883100223326	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGGTGTGCTGTTTGATT	NA	False	NA	21	True	ATTAAA	-21	NA	43896208	43901740	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_43896248_43897675_43897720_43898877_43899024_43899444_43899484_43899732_43899765_43900036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082531	chr7	+	2066	7	FSM	ENSMUSG00000045411.17	ENSMUST00000185481.7	759	7	33	-1340	0	0	multi-exon	FALSE	canonical	3	30	junction_1	300.418411922808	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGTGTGCTGTTTGATTC	NA	False	NA	22	True	ATTAAA	-22	NA	43896210	43901741	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_43896233_43896674_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082533	chr7	+	2079	7	FSM	ENSMUSG00000045411.17	ENSMUST00000188111.7	2131	7	52	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	296.487211641019	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGTGTGCTGTTTGATTC	NA	False	NA	22	True	ATTAAA	-22	NA	43896210	43901741	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_43896233_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082536	chr7	+	2235	8	NNC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	337.565594532744	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTGCTGTTTGATTCGG	NA	False	NA	24	True	ATTAAA	-24	NA	43896210	43901743	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_43896233_43896661_43896841_43897333_43897488_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082552	chr7	+	1900	6	FSM	ENSMUSG00000045411.17	ENSMUST00000137702.8	784	6	59	-1175	0	0	multi-exon	FALSE	canonical	3	108	junction_1	258.311904487579	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGTGTGCTGTTTGATTC	NA	False	NA	22	True	ATTAAA	-22	NA	43896210	43901741	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_43896233_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082555	chr7	+	1988	6	NNC	ENSMUSG00000045411.17	novel	2131	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_2	324.315032029044	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGTGTGCTGTTTGATTC	NA	False	NA	22	True	ATTAAA	-22	NA	43896210	43901741	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_43896233_43897675_43897720_43898877_43899024_43899444_43899484_43899732_43899765_43900036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082557	chr7	+	2167	7	NNC	ENSMUSG00000045411.17	novel	2131	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	324.736303278008	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGTGTGCTGTTTGATTC	NA	False	NA	22	True	ATTAAA	-22	NA	43896210	43901741	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_43896233_43896661_43896841_43897675_43897720_43898877_43899024_43899444_43899484_43899732_43899765_43900036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082591	chr7	+	2250	8	NNC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	327.388554024301	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTGCTGTTTGATTCGG	NA	False	NA	24	True	ATTAAA	-24	NA	43896210	43901743	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_43896248_43896661_43896841_43897333_43897488_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082605	chr7	+	2660	7	NNC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	315.509508573038	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896210	43901739	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_43896841_43897333_43897488_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082615	chr7	+	1402	1	ISM	ENSMUSG00000045411.17	ENSMUST00000055858.14	1982	6	4192	4	949	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43900337	43901739	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_43900300_43901700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082638	chr7	-	3529	27	FSM	ENSMUSG00000038644.15	ENSMUST00000049343.15	3454	27	-72	-3	-70	3	multi-exon	FALSE	canonical	3	875	junction_26	151.95728923444	2062	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTTGTGGTCTTTGGGA	NA	False	NA	1	True	AATAAA	-24	NA	44198343	44182166	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082697	chr7	-	2029	10	NIC	ENSMUSG00000060601.14	novel	1999	10	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	206.953087067851	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	False	NA	0	True	AATAAA	-31	NA	44203399	44199039	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202179_44203002_44203133_44203228
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082698	chr7	-	2272	9	NIC	ENSMUSG00000060601.14	novel	1999	10	NA	NA	-6	0	intron_retention	FALSE	canonical	1	2	junction_8	200.783737825054	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	False	NA	0	True	AATAAA	-31	NA	44203381	44199039	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44202045_44202120_44202179_44203002_44203133_44203228
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082701	chr7	-	2281	9	NIC	ENSMUSG00000060601.14	novel	1944	10	NA	NA	-12	0	intron_retention	FALSE	canonical	1	2	junction_8	223.616161088594	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	False	NA	0	True	AATAAA	-31	NA	44203387	44199039	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44202045_44202120_44202182_44203002_44203133_44203228
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082706	chr7	-	2020	10	FSM	ENSMUSG00000060601.14	ENSMUST00000167197.8	1944	10	-40	-36	-12	0	multi-exon	FALSE	canonical	1	2	junction_9	223.571073020098	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	False	NA	0	True	AATAAA	-31	NA	44203387	44199039	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202182_44203002_44203133_44203228
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082711	chr7	-	2002	10	NIC	ENSMUSG00000060601.14	novel	1948	10	NA	NA	-3	0	combination_of_known_junctions	TRUE	canonical	1	2	junction_9	233.415699748087	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	False	NA	0	True	AATAAA	-31	NA	44203378	44199039	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202182_44203002_44203133_44203228
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082712	chr7	-	2012	10	NIC	ENSMUSG00000060601.14	novel	1999	10	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	218.641823340321	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	False	NA	0	True	AATAAA	-31	NA	44203391	44199039	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202179_44203002_44203133_44203228
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082734	chr7	-	2347	8	NIC	ENSMUSG00000060601.14	novel	1853	9	NA	NA	2	0	intron_retention	FALSE	canonical	1	2	junction_7	214.481053822895	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203370	44199055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44201284_44201378_44202045_44202120_44202179_44203002_44203133_44203228
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082739	chr7	-	2082	10	NIC	ENSMUSG00000060601.14	novel	1999	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	240.713804760901	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203370	44199055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201768_44201930_44202045_44202120_44202179_44203002_44203133_44203228
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082745	chr7	-	2085	10	NIC	ENSMUSG00000060601.14	novel	1944	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	252.777509157366	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203370	44199055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201768_44201930_44202045_44202120_44202182_44203002_44203133_44203228
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082746	chr7	-	1971	10	NIC	ENSMUSG00000060601.14	novel	1944	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_9	217.490797307795	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203372	44199055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202182_44203002_44203133_44203246
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082760	chr7	+	2712	6	NIC	ENSMUSG00000062785.15	novel	2728	5	NA	NA	26	104	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	3.42928563989645	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAACCTCAGGTCTCCATG	4139	False	NA	NA	False	NA	NA	NA	44240335	44251669	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_44241183_44244584_44245693_44247807_44248000_44248229_44248358_44250292_44250353_44251292
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082768	chr7	-	1756	3	FSM	ENSMUSG00000038539.16	ENSMUST00000047356.11	1816	3	59	1	-25	0	multi-exon	FALSE	canonical	3	52	junction_1	35.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTGTCTTATCTTTG	9745	False	NA	-1	True	AATAAA	-18	NA	44466023	44461680	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_44462945_44464412_44464707_44465825
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082784	chr7	+	2614	1	NIC	ENSMUSG00000109511.2	novel	2708	2	NA	NA	13	-9679	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTGGGGAGCCAGAAGC	383	False	NA	NA	False	AAAACA	-16	NA	44465819	44468433	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_44465800_44468400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082854	chr7	-	1903	12	FSM	ENSMUSG00000038502.18	ENSMUST00000046575.17	1883	12	-18	-2	-18	1	multi-exon	FALSE	canonical	3	715	junction_7	41.0738097969944	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTCCCTCCCTGCTTGT	5422	False	NA	-7	True	AATAAA	-16	NA	44519230	44512489	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616_44516700_44516798_44516937_44518774
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082883	chr7	-	3726	18	FSM	ENSMUSG00000002968.10	ENSMUST00000208253.2	3693	18	-33	0	-5	0	multi-exon	FALSE	canonical	3	62	junction_1	207.582576223432	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGGCCGTGGGCTTTCC	6943	False	NA	-4	True	NA	NA	NA	44541848	44526188	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_44527715_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082901	chr7	-	2334	18	NIC	ENSMUSG00000002968.10	novel	2619	18	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	175	junction_9	180.66160609536	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCTCCCGTGACTGACG	6943	False	NA	-6	True	AATAAA	-17	NA	44541848	44528807	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533675_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082912	chr7	-	2258	17	NIC	ENSMUSG00000002968.10	novel	2619	18	NA	NA	-5	-1	combination_of_known_junctions	FALSE	canonical	3	109	junction_3	203.468018064265	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGCTCCCGTGACTGAC	6943	False	NA	-7	True	AATAAA	-16	NA	44541848	44528808	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_44528939_44529350_44529529_44529675_44529895_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082922	chr7	-	2323	18	NNC	ENSMUSG00000002968.10	novel	2619	18	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_9	218.911620472406	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCGGCTCCCGTGACTGA	6949	False	NA	-8	True	AATAAA	-15	NA	44541842	44528809	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533668_44533982_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082935	chr7	-	2741	17	FSM	ENSMUSG00000002968.10	ENSMUST00000208551.2	2678	17	-58	-5	-5	-2	multi-exon	FALSE	canonical	3	744	junction_8	64.3087948398195	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCGGCTCCCGTGACTGA	6943	False	NA	-8	True	AATAAA	-15	NA	44541848	44528809	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082950	chr7	-	3404	23	NNC	ENSMUSG00000060279.15	novel	3376	23	NA	NA	-12	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	144.442358888666	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTGCCCACCCTGAGTG	NA	False	NA	2	True	AATAAA	-29	NA	44578932	44549792	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_44550240_44550410_44550546_44550660_44550731_44550807_44550925_44551014_44551137_44552165_44552263_44552397_44552481_44552567_44552625_44553164_44553326_44553412_44553581_44553660_44553893_44554076_44554175_44555108_44555292_44555494_44555633_44555734_44555904_44556257_44556409_44557147_44557257_44558643_44558746_44559122_44559253_44565264_44565459_44565586_44565730_44565825_44565895_44578703
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082976	chr7	-	2744	19	FSM	ENSMUSG00000007783.11	ENSMUST00000063761.8	2793	19	50	-1	-23	0	multi-exon	FALSE	canonical	3	39	junction_13	17.8819862459058	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACTGTGCTTTTCTGCGG	2714	False	NA	-1	True	AATAAA	-21	NA	44624225	44608795	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_44609100_44609267_44609361_44609473_44609588_44610181_44610335_44610942_44611075_44611569_44611735_44612166_44612284_44613327_44613434_44614507_44614691_44614794_44614991_44616049_44616135_44616220_44616329_44616481_44616557_44619828_44619967_44620041_44620144_44620659_44620832_44622433_44622574_44623150_44623305_44624018
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000082988	chr7	-	1315	11	FSM	ENSMUSG00000109324.3	ENSMUST00000107843.11	1508	11	196	-3	-16	3	multi-exon	FALSE	canonical	3	222	junction_9	1333.46760365597	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCGCCCTGGGGCTGGG	NA	False	NA	-27	True	AATAAA	-20	NA	44635796	44626178	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44633503_44633558_44635706
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083071	chr7	-	1178	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209626.2	734	8	-4	-440	-2	-5	multi-exon	FALSE	canonical	3	1166	junction_7	5527.98350879137	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	-6	True	AATAAA	-14	NA	44778163	44774986	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777965
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083085	chr7	-	730	7	NIC	ENSMUSG00000074129.15	novel	734	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	332	junction_3	7433.61662576763	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778160	44775345	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44777965
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083088	chr7	-	589	7	FSM	ENSMUSG00000074129.15	ENSMUST00000210191.2	562	7	-1	-26	0	0	multi-exon	FALSE	canonical	3	190	junction_2	7369.60067703053	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778161	44775345	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083096	chr7	-	832	8	NIC	ENSMUSG00000074129.15	novel	658	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	190	junction_2	7403.95883350004	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778160	44775345	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_44775457_44775538_44775678_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777965
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083110	chr7	-	2645	17	FSM	ENSMUSG00000007833.16	ENSMUST00000209963.2	3537	17	-30	922	-19	8	multi-exon	TRUE	canonical	3	349	junction_15	41.3256881370413	1178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGGGAACAGTGGCTTC	9303	False	NA	0	True	AATAAA	-28	NA	44804027	44791250	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44799087_44799191_44803815
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083187	chr7	+	2099	12	NNC	ENSMUSG00000030796.18	novel	2140	12	NA	NA	-4	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	112.489558744118	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCAAAAACCCAAAGGGGAT	5464	False	NA	NA	False	AATAAA	-30	NA	44865210	44883060	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_44865257_44866636_44866875_44867504_44867579_44868575_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083199	chr7	+	2104	12	NIC	ENSMUSG00000030796.18	novel	2140	12	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	100.831419739145	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCAAAAACCCAAAGGGGAT	5500	False	NA	NA	False	AATAAA	-30	NA	44865246	44883060	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_44865299_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083209	chr7	+	2082	12	NIC	ENSMUSG00000030796.18	novel	3396	11	NA	NA	25	1	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	97.4747265400093	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCAAAAACCCAAAGGGGAT	5554	False	NA	NA	False	AATAAA	-30	NA	44865300	44883060	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_44865331_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083228	chr7	-	4047	25	FSM	ENSMUSG00000038260.11	ENSMUST00000042194.10	4234	25	-11	198	0	-3	multi-exon	FALSE	canonical	3	102	junction_19	18.3832181168949	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCACATGCTTGGCTCCTGT	3190	False	NA	-5	True	AATAAA	-20	NA	44983204	44952776	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_44953117_44954032_44954139_44954218_44954292_44954371_44954505_44954712_44954919_44957667_44957846_44957967_44958143_44958521_44958655_44959700_44960124_44964018_44964097_44964404_44964518_44966198_44966345_44966429_44966560_44967459_44967595_44967762_44968105_44968665_44968779_44971211_44971312_44971422_44971615_44971744_44971807_44975986_44976171_44976400_44976565_44976695_44976877_44977144_44977320_44982805_44982877_44983110
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083232	chr7	+	792	1	FSM	ENSMUSG00000046721.12	ENSMUST00000026901.12	653	1	-30	-109	-30	109	mono-exon	FALSE	NA	NA	NA	NA	NA	1211	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGGGCAGTGGTGGCAC	NA	False	NA	NA	False	NA	NA	NA	44974358	44975150	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_44974400_44975200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083248	chr7	-	762	6	FSM	ENSMUSG00000003872.10	ENSMUST00000003971.10	735	6	-27	0	-27	0	multi-exon	FALSE	canonical	2	8	junction_1	1.93907194296653	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAGTGTCTTGTGTGTCTG	7915	False	NA	1	True	TTTAAA	-16	NA	45020034	45017314	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_45017423_45017727_45017892_45018564_45018775_45019338_45019411_45019550_45019670_45019945
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083285	chr7	-	1844	15	FSM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	-8	-2	-8	1	multi-exon	FALSE	canonical	3	1951	junction_14	206.139144605714	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTGTGTCCTCAGAG	9174	False	NA	-2	True	TATAAA	-17	NA	45084055	45071319	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083319	chr7	-	1897	1	FSM	ENSMUSG00002076377.1	ENSMUST00020182363.1	109	1	-1642	-146	-1642	146	mono-exon	FALSE	NA	NA	NA	NA	NA	237	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTTTTTCTATATAT	NA	False	NA	-18	True	AATAAA	-18	NA	45109263	45107366	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_45107400_45109300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083321	chr7	-	1222	3	FSM	ENSMUSG00000050708.17	ENSMUST00000211500.2	825	3	-376	-21	0	0	multi-exon	TRUE	canonical	3	56898	junction_1	6244.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_45107708_45107958_45108085_45108507
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083322	chr7	-	1645	2	FSM	ENSMUSG00000050708.17	ENSMUST00000211694.2	604	2	-1040	-1	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_45107708_45107958
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083324	chr7	-	923	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	45	0	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083332	chr7	-	1473	2	NIC	ENSMUSG00000050708.17	novel	968	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	69387	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_45108085_45108507
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083347	chr7	-	865	6	FSM	ENSMUSG00000003873.12	ENSMUST00000211365.2	801	6	-62	-2	0	2	multi-exon	FALSE	canonical	3	256	junction_1	1143.13684220219	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCCCTTGTCCGCCCAGC	9915	False	NA	0	True	AATAAA	-24	NA	45116322	45111118	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45116165
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083351	chr7	-	887	6	FSM	ENSMUSG00000003873.12	ENSMUST00000033093.10	867	6	-18	-2	-18	2	multi-exon	FALSE	canonical	3	2296	junction_5	352.488638114762	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCCCTTGTCCGCCCAGC	9897	False	NA	0	True	AATAAA	-24	NA	45116340	45111118	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45116165
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083387	chr7	+	806	5	ISM	ENSMUSG00000023467.19	ENSMUST00000085331.14	1525	10	4982	0	3776	0	3prime_fragment	FALSE	canonical	3	69	junction_2	4.38748219369606	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTCTGTGCGTTTGGA	5060	False	NA	17	True	AATAAA	-18	NA	45169007	45171806	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083398	chr7	-	3308	1	NIC	ENSMUSG00000040435.13	novel	2333	3	NA	NA	44	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTACGTGTGTTCTTTAT	3905	False	NA	44	True	AATAAA	-24	NA	45175648	45172340	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_45172300_45175600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083407	chr7	+	1374	9	FSM	ENSMUSG00000030825.20	ENSMUST00000107752.12	1400	9	26	0	-18	0	multi-exon	FALSE	canonical	3	159	junction_3	205.455591308682	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGAGTGGTCGTGTCCT	NA	False	NA	10	True	NA	NA	NA	45204342	45216745	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_45204491_45205478_45205518_45205736_45205820_45207031_45207099_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083430	chr7	+	1406	3	ISM	ENSMUSG00000042918.18	ENSMUST00000210213.2	2486	9	3982	182	-425	-155	3prime_fragment	FALSE	canonical	3	12	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCAGTTCTCATGTCTTA	NA	False	NA	NA	False	NA	NA	NA	45293382	45295010	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_45293853_45293942_45293998_45294129
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083433	chr7	-	2356	3	NNC	ENSMUSG00000040364.9	novel	2470	4	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTACCCAGCAATTGAGT	NA	False	NA	NA	False	AATAAA	-21	NA	45343798	45327109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_45328949_45333603_45333716_45343393
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083469	chr7	+	739	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	-59	-1	-59	0	multi-exon	FALSE	canonical	3	6098	junction_1	973.20817916826	5325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTTCATTCATGAAG	5863	False	NA	17	True	AATAAA	-24	NA	45367435	45370260	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083488	chr7	+	2727	1	NIC	ENSMUSG00000059070.17	novel	2989	7	NA	NA	5	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTCCTCTGTGTTCATTC	5955	False	NA	11	True	AATAAA	-18	NA	45367527	45370254	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_45367500_45370300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083491	chr7	+	1062	6	FSM	ENSMUSG00000059070.17	ENSMUST00000209287.2	1027	6	-32	-3	13	0	multi-exon	FALSE	canonical	3	220	junction_1	3241.25016621673	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCTCTGTGTTCATTCA	5976	False	NA	12	True	AATAAA	-19	NA	45367548	45370255	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_45368005_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083509	chr7	-	1773	6	FSM	ENSMUSG00000053801.19	ENSMUST00000209484.2	1783	6	10	0	4	0	multi-exon	FALSE	canonical	2	14	junction_5	183.663387750526	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACAAGTCCTCTGAGCTT	8638	False	NA	-7	True	AATAAA	-28	NA	45480209	45474653	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45480018
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083519	chr7	+	1561	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	38	0	-15	0	multi-exon	TRUE	canonical	3	208	junction_1	16.5378354085412	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCTGTTCCCTGCCCGCT	3982	False	NA	17	True	AATAAA	-21	NA	45522233	45533156	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083527	chr7	+	2189	8	FSM	ENSMUSG00000002781.20	ENSMUST00000069772.16	2297	8	115	-7	-22	7	multi-exon	FALSE	canonical	3	12	junction_1	17.4414472344658	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTGTGGCTGCAGGTCAA	5607	False	NA	14	True	AATAAA	-21	NA	45546479	45566844	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_45546526_45546858_45547091_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083553	chr7	+	4214	31	FSM	ENSMUSG00000030835.7	ENSMUST00000033121.7	4257	31	39	4	39	-4	multi-exon	FALSE	canonical	3	214	junction_14	37.3234510730184	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCATAGTGTGGGGTGC	8132	False	NA	25	True	AATAAA	-25	NA	45683160	45733632	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_45683397_45686982_45687073_45687966_45688013_45690892_45690994_45691955_45692063_45693654_45693728_45694684_45694838_45695272_45695411_45696332_45696423_45699693_45699800_45699969_45700121_45703925_45704101_45706018_45706161_45706500_45706633_45707839_45707977_45710302_45710391_45711192_45711257_45712390_45712487_45715585_45715805_45715883_45715967_45717802_45717963_45718095_45718223_45719346_45719461_45720198_45720327_45721921_45722064_45725498_45725583_45727449_45727561_45728914_45729017_45730818_45730939_45732658_45732752_45733026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083578	chr7	+	2794	16	NIC	ENSMUSG00000006599.14	novel	2736	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	187.878920821067	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	4717	False	NA	4	True	AATAAA	-15	NA	46445537	46473224	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_46445713_46446820_46446890_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083600	chr7	+	1125	5	NNC	ENSMUSG00000063229.16	novel	1277	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3488.16831410126	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	19	True	AATAAA	-15	NA	46495266	46505051	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_46495342_46497019_46497170_46498396_46498522_46503406_46503531_46504400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083679	chr7	+	1280	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-21	-27	-21	27	mono-exon	FALSE	NA	NA	NA	NA	NA	659	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGCTCAGTAGTTAAAAGA	NA	False	NA	NA	False	AATAAA	-41	NA	51396373	51397653	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_51396400_51397700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083693	chr7	-	526	2	Genic_Genomic	ENSMUSG00000099647.2	novel	321	1	NA	NA	-46	275	multi-exon	FALSE	canonical	3	158	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTGCTACTTCAAAGC	NA	False	NA	NA	False	AATAAA	-40	NA	54062272	54061630	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr7_-_54062012_54062127
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083735	chr7	+	3107	11	FSM	ENSMUSG00000025326.13	ENSMUST00000107537.5	4911	11	51	1753	0	30	multi-exon	FALSE	canonical	3	99	junction_1	51.6876194073591	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGAGGGATAATTTGAT	NA	False	NA	NA	False	NA	NA	NA	58878549	58954722	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_58879020_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083737	chr7	+	3227	12	NIC	ENSMUSG00000025326.13	novel	9856	13	NA	NA	0	30	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	67.1986078171415	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGAGGGATAATTTGAT	NA	False	NA	NA	False	NA	NA	NA	58878549	58954722	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_58879020_58893097_58893218_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083754	chr7	+	1378	2	Genic_Genomic	ENSMUSG00000047370.6	novel	492	1	NA	NA	-80	7873	multi-exon	FALSE	canonical	0	0	junction_1	0	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCATCAACATAAAGATATT	NA	False	NA	NA	False	NA	NA	NA	59805276	59813721	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr7_+_59806578_59813644
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083757	chr7	+	1645	1	FSM	ENSMUSG00000033585.6	ENSMUST00000038775.6	3694	1	1715	334	1715	-334	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATACTGTGAAATAATTTCT	NA	False	NA	NA	False	AATAAA	-20	NA	61998031	61999676	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_61998000_61999700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083761	chr7	-	2561	1	FSM	ENSMUSG00000070527.4	ENSMUST00000094340.4	2547	1	-14	0	-14	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGACTCTTTTTTTAAT	NA	False	NA	0	True	AATAAA	-18	NA	62069901	62067340	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_62067300_62069900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083770	chr7	+	186	1	Intergenic	novelGene_327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTGCTTTGGGCAAGGT	NA	False	NA	NA	False	NA	NA	NA	63439097	63439283	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_63439100_63439300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083779	chr7	+	2001	10	FSM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	-3	-6	-3	6	multi-exon	FALSE	canonical	3	724	junction_5	65.6911967719673	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTTTTCAGACTATGTT	NA	False	NA	32	True	ATTAAA	-29	NA	63835125	63861181	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083787	chr7	+	1992	11	NIC	ENSMUSG00000030523.19	novel	2928	14	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	301.433309373732	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTCTAGAGGACTGAGT	NA	False	NA	18	True	ATTAAA	-15	NA	63835206	63861167	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083823	chr7	-	1372	1	FSM	ENSMUSG00000070520.5	ENSMUST00000094331.5	5946	1	-56	4630	-56	-4630	mono-exon	FALSE	NA	NA	NA	NA	NA	232	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGCTTTAAATATACATA	NA	False	NA	2	True	AATAAA	-22	NA	64522801	64521429	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_64521400_64522800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083875	chr7	-	2829	10	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	41	junction_5	13.5026289164118	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTTCTCTCCTCCTGTT	572	False	NA	-1	True	AATAAA	-17	NA	67294979	67163156	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083894	chr7	+	2220	11	FSM	ENSMUSG00000030555.17	ENSMUST00000107471.8	2216	11	-3	-1	-3	1	multi-exon	FALSE	canonical	3	46	junction_1	12.2429571591181	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTTGTGTGTTTGAAAT	NA	False	NA	14	True	AATAAA	-19	NA	67297169	67376325	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_67297594_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083927	chr7	+	2118	1	FSM	ENSMUSG00000097530.2	ENSMUST00000181818.2	1461	1	-40	-617	-40	617	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAGAACGAGAGAAAGAGA	NA	False	NA	NA	False	ATTAAA	-32	NA	72322525	72324643	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_72322500_72324600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083935	chr7	-	4636	32	NIC	ENSMUSG00000078671.12	novel	9085	39	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	2	3	junction_27	13.8258079568888	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAGAAGAAGAAAGAGAACA	NA	False	NA	NA	False	AAAAAG	-16	NA	73191494	73101552	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_73101588_73102846_73102976_73104076_73104200_73105238_73105390_73105521_73105661_73113383_73113524_73114095_73114138_73118203_73118380_73119305_73119477_73121544_73121638_73122759_73122857_73124253_73124403_73125091_73125242_73128406_73128479_73130148_73130302_73130708_73130872_73134156_73134346_73140226_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083941	chr7	-	3734	25	ISM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	0	42995	0	4943	5prime_fragment	FALSE	canonical	3	10	junction_9	13.8533364412894	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGAGGAGGAAGAACGGCA	NA	False	NA	NA	False	NA	NA	NA	73191494	73119380	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_-_73119477_73121544_73121638_73122759_73122857_73124253_73124403_73125091_73125242_73128406_73128479_73130148_73130302_73130708_73130872_73134156_73134346_73140226_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73157553_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000083993	chr7	+	2628	4	FSM	ENSMUSG00000030611.11	ENSMUST00000136001.8	548	4	-15	-2065	0	-1	multi-exon	FALSE	canonical	3	364	junction_2	42.7083130081252	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAGCTGTGAGTTTTTGTT	NA	False	NA	2	True	AATAAA	-15	NA	78433102	78442736	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_78433172_78433320_78433429_78438422_78438522_78440384
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084000	chr7	+	2068	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107421.8	2007	4	-60	-1	20	1	multi-exon	FALSE	canonical	3	314	junction_1	165.023903992388	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAACTGGTCCTTTCTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	78545621	78558130	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_78545763_78552091_78552579_78555590_78555792_78556891
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084007	chr7	+	2132	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107425.8	4956	4	-3	2827	-3	1	multi-exon	FALSE	canonical	3	272	junction_1	184.819431397844	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAACTGGTCCTTTCTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	78545671	78558130	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_78545763_78551977_78552579_78555590_78555792_78556891
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084022	chr7	-	2036	9	FSM	ENSMUSG00000030605.16	ENSMUST00000107409.5	2008	9	-27	-1	-20	1	multi-exon	TRUE	canonical	3	790	junction_6	144.155948541848	1090	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTGCCTCCTCATTGC	NA	False	NA	-4	True	AATACA	-20	NA	78798828	78783514	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78798642
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084059	chr7	-	4558	23	FSM	ENSMUSG00000039176.18	ENSMUST00000073889.14	7837	23	128	3151	-36	0	multi-exon	FALSE	canonical	3	224	junction_20	45.8324292422727	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCTACTGATATTATT	NA	False	NA	-7	True	TATAAA	-19	NA	79115982	79099129	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_79099786_79100232_79100394_79101289_79101499_79101607_79101777_79101854_79101978_79103452_79103700_79103786_79103923_79104341_79104460_79104558_79104613_79105182_79105344_79105788_79105897_79106182_79106261_79106455_79106577_79107921_79108159_79108921_79109049_79109184_79109334_79109436_79109620_79109805_79109886_79110010_79110158_79110263_79110429_79111445_79111642_79114351_79115120_79115817
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084062	chr7	+	208	1	Intergenic	novelGene_328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGCTACATACTTGAAGC	NA	False	NA	NA	False	NA	NA	NA	79112537	79112745	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_79112500_79112700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084067	chr7	-	1992	11	FSM	ENSMUSG00000030549.7	ENSMUST00000032766.5	2090	11	98	0	98	0	multi-exon	FALSE	canonical	2	10	junction_10	3.38969025133566	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGGGAGTGGATGTTCT	NA	False	NA	NA	False	AATAAA	-21	NA	79267307	79243110	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_79243549_79244529_79244737_79248288_79248363_79248717_79248843_79249104_79249242_79249426_79249565_79250241_79250409_79251334_79251483_79253487_79253639_79257292_79257480_79267087
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084072	chr7	+	2114	6	ISM	ENSMUSG00000046591.11	ENSMUST00000206591.2	3655	20	-26	18211	-1	9	5prime_fragment	FALSE	canonical	3	244	junction_2	18.3847763108502	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAGGCAAATTTCCATAT	1949	False	NA	NA	False	AATAAA	-26	NA	79309968	79325470	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_79310751_79315410_79315688_79317407_79317647_79319195_79319431_79320613_79320744_79325019
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084083	chr7	-	2250	3	FSM	ENSMUSG00000030545.10	ENSMUST00000032761.8	2241	3	-9	0	-9	0	multi-exon	TRUE	canonical	3	20	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCGTCTGTGAGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	79392837	79385704	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_79387659_79389912_79390029_79392657
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084133	chr7	-	1534	10	NIC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	604.630241052382	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	-5	True	AAAAAG	-13	NA	79765066	79744593	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084192	chr7	+	2971	15	NIC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_13	288.475240333922	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACTGTTTTGTCTTCAAT	NA	False	NA	16	True	AATAAA	-26	NA	79944215	79966005	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79963274_79963317_79964861
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084211	chr7	-	3221	20	NIC	ENSMUSG00000030533.17	novel	3932	22	NA	NA	-3	0	combination_of_known_junctions	TRUE	canonical	3	31	junction_19	16.1947975641576	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTGTTTGTTGTTGTAG	NA	False	NA	NA	False	AATAAA	-16	NA	79989970	79975039	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_79975626_79975760_79975917_79976056_79976175_79977330_79977447_79977665_79977780_79978200_79978268_79978440_79978569_79978769_79978911_79979253_79979396_79980085_79980181_79981300_79981602_79982724_79982897_79983767_79983939_79984442_79984612_79986053_79986222_79986672_79986766_79988588_79988765_79989061_79989099_79989298_79989461_79989861
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084382	chr7	+	2465	6	FSM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	15	3	15	-3	multi-exon	FALSE	canonical	3	154	junction_5	19.4566184112245	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTATCTTGAGTTCCTCAT	NA	False	NA	NA	False	ATTAAA	-20	NA	83281181	83291533	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084394	chr7	-	2999	1	FSM	ENSMUSG00000070462.5	ENSMUST00000094216.5	4433	1	-207	1641	-207	-1641	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCGCAGTTACTGTCTTT	NA	False	NA	-7	True	ATTAAA	-22	NA	83533720	83530721	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_83530700_83533700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084399	chr7	+	2101	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	50	2341	48	1111	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGTCCTCCAGTGATG	NA	False	NA	35	True	AATAAA	-30	NA	83541257	83548399	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_83541684_83544737_83544971_83546957
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084425	chr7	-	1548	7	FSM	ENSMUSG00000030629.16	ENSMUST00000178385.9	1538	7	-1	-9	-1	9	multi-exon	FALSE	canonical	3	57	junction_6	230.002475832085	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACGTTTCCCTCTTCTTT	NA	False	NA	NA	False	AATAAA	-22	NA	84328601	84264252	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84328517
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084437	chr7	+	1912	7	FSM	ENSMUSG00000030560.18	ENSMUST00000032779.12	2493	7	8	573	8	-573	multi-exon	FALSE	canonical	3	323	junction_5	18.6100331362771	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCTTTCTATGTGTGTTT	NA	False	NA	16	True	AATAAA	-21	NA	87927300	87959523	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_87927583_87930594_87930741_87946290_87946458_87948652_87948806_87951392_87951509_87957220_87957353_87958607
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084443	chr7	-	3391	15	FSM	ENSMUSG00000039428.12	ENSMUST00000041968.11	3700	15	0	309	0	-309	multi-exon	FALSE	canonical	3	153	junction_2	15.7941154115276	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCTGTGAGAGATATTT	NA	False	NA	-1	True	AGTAAA	-22	NA	88987995	88789230	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_88791179_88792988_88793057_88793864_88793964_88797177_88797255_88800620_88800685_88803235_88803404_88805634_88805705_88808076_88808224_88814332_88814375_88845320_88845368_88893128_88893195_88929174_88929209_88953888_88953982_88956344_88956473_88987655
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084457	chr7	-	2171	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	53	0	12	0	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGTACCTTGACAGTGG	NA	False	NA	-14	True	AATAAA	-17	NA	89590359	89566736	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084467	chr7	-	2110	12	FSM	ENSMUSG00000030619.11	ENSMUST00000107234.3	2067	12	-41	-2	-41	2	multi-exon	FALSE	canonical	3	1777	junction_2	230.503903625897	804	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTAGAAAGCTATTTACTT	NA	False	NA	0	True	AATAAA	-35	NA	89630232	89603859	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084498	chr7	-	774	5	FSM	ENSMUSG00000030615.13	ENSMUST00000032844.7	799	5	20	5	-1	-5	multi-exon	FALSE	canonical	3	739	junction_4	32.5297940356222	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGTCTGCAACATTAAAA	1665	False	NA	NA	False	AATAAA	-14	NA	90106417	90099912	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_90100144_90100750_90100866_90101914_90102109_90104631_90104728_90106279
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084534	chr7	-	486	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	-25	164	-25	-164	mono-exon	FALSE	NA	NA	NA	NA	NA	617	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGCCAAAATCAGCAGCC	NA	False	NA	NA	False	AAGAAA	-30	NA	92828877	92828391	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_92828400_92828900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084540	chr7	+	239	1	Intergenic	novelGene_329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATTTGCGTATACATATA	NA	False	NA	NA	False	NA	NA	NA	96402218	96402457	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_96402200_96402500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084549	chr7	+	2464	13	NNC	ENSMUSG00000018995.13	novel	3778	14	NA	NA	-20	520	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	33.1813200460741	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATGAAAGAAGTTATTTT	7379	False	NA	6	True	ATTAAA	-18	NA	96600748	96712699	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_96601152_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96689105_96689244_96706654_96706769_96711775
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084565	chr7	-	1086	2	FSM	ENSMUSG00000035686.9	ENSMUST00000043077.8	1277	2	185	6	-26	-6	multi-exon	FALSE	canonical	3	27	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACATGGCATGTTGGT	NA	False	NA	-12	True	ATTAAA	-9	NA	97066752	97062150	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_97062723_97066238
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084577	chr7	+	3204	23	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	105.099598571235	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTCTAGTTTCTGGTCC	977	False	NA	29	True	AATAAA	-17	NA	97130206	97190605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150270_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084586	chr7	+	3194	23	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_1	91.9439732384675	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTCTAGTTTCTGGTCC	980	False	NA	29	True	AATAAA	-17	NA	97130209	97190605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_97130358_97134126_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084589	chr7	+	3053	22	NIC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	3	28	junction_20	102.131723224906	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTCTAGTTTCTGGTCC	980	False	NA	29	True	AATAAA	-17	NA	97130209	97190605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97187106_97187228_97190218
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084646	chr7	-	3922	11	FSM	ENSMUSG00000030760.15	ENSMUST00000033020.14	11340	11	-4	7422	-4	-153	multi-exon	FALSE	canonical	3	186	junction_1	20.7511445467473	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACTGGTTTTGGAAGAAAA	NA	False	NA	-2	True	AATAAA	-17	NA	97958749	97863017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084652	chr7	-	2623	2	FSM	ENSMUSG00000049580.13	ENSMUST00000206414.2	2310	2	-113	-200	-73	0	multi-exon	FALSE	canonical	3	40	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGCATTTGCTGACAAATC	NA	False	NA	2	True	AATAAA	-30	NA	98010608	97999874	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_98002338_98010448
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084675	chr7	-	2284	8	FSM	ENSMUSG00000030747.6	ENSMUST00000033001.6	2262	8	-22	0	-22	0	multi-exon	FALSE	canonical	3	97	junction_4	10.965623464226	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTTGTTGCTTAATGC	NA	False	NA	NA	False	AATAAA	-18	NA	98831948	98802864	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_98803908_98806183_98806387_98807359_98807535_98808039_98808245_98813841_98813913_98814288_98814397_98818904_98819034_98831598
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084681	chr7	-	1778	6	FSM	ENSMUSG00000052396.8	ENSMUST00000064231.8	1780	6	2	0	2	0	multi-exon	FALSE	canonical	3	105	junction_3	4.4	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTTTTCTCTCTCC	NA	False	NA	-1	True	AATAAA	-20	NA	98887824	98868290	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_98869167_98871459_98871660_98872199_98872375_98872707_98872913_98881664_98881844_98887681
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084689	chr7	+	2317	3	FSM	ENSMUSG00000055407.15	ENSMUST00000107100.3	2335	3	18	0	18	0	multi-exon	FALSE	canonical	3	44	junction_2	18	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTCTCTGGCTCTGTG	NA	False	NA	13	True	AATAAA	-19	NA	98917570	98986344	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_98918521_98964895_98965110_98985191
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084695	chr7	-	2281	5	FSM	ENSMUSG00000070436.13	ENSMUST00000094154.6	2215	5	-47	-19	-47	6	multi-exon	FALSE	canonical	3	1409	junction_4	114.233313879971	1516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGATTTATGCAGAGT	NA	False	NA	NA	False	ATTAAA	-36	NA	99002493	98994576	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084709	chr7	-	2135	6	FSM	ENSMUSG00000070436.13	ENSMUST00000208119.2	2173	6	0	38	0	-33	multi-exon	FALSE	canonical	3	37	junction_5	754.843400977978	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTGTGAAAGCAGATT	NA	False	NA	51	True	AATAAA	-21	NA	99002321	98994634	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002088_99002173_99002259
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084717	chr7	-	2135	6	NIC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	-5	-33	combination_of_known_junctions	FALSE	canonical	3	37	junction_5	744.783297342254	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTGTGAAAGCAGATT	NA	False	NA	51	True	AATAAA	-21	NA	99002326	98994634	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002093_99002173_99002259
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084757	chr7	-	1825	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	83	0	-4	0	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGTATGCAATTATT	8418	False	NA	-12	True	AATAAA	-29	NA	99132862	99127102	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084780	chr7	-	3014	12	NNC	ENSMUSG00000030726.17	novel	3069	12	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_4	154.789059343876	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGCGAGTTGGAGT	NA	False	NA	-4	True	AATAAA	-18	NA	99770714	99731317	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742692_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084817	chr7	+	3110	8	FSM	ENSMUSG00000030704.15	ENSMUST00000032946.10	3214	8	104	0	0	0	multi-exon	FALSE	canonical	3	462	junction_3	112.157687827342	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGTTCACATTCTTTATT	NA	False	NA	11	True	AATAAA	-19	NA	100256896	100290475	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_100257501_100275758_100275818_100277610_100277665_100279044_100279151_100280948_100281061_100283851_100283946_100285901_100285969_100288461
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084820	chr7	+	3110	8	FSM	ENSMUSG00000030704.15	ENSMUST00000098252.5	3110	8	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_3	204.582800960832	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGTTCACATTCTTTATT	NA	False	NA	11	True	AATAAA	-19	NA	100256896	100290475	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_100257501_100275758_100275818_100277610_100277665_100278872_100278979_100280948_100281061_100283851_100283946_100285901_100285969_100288461
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084838	chr7	+	186	1	Intergenic	novelGene_330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACATGAGATTTAAATA	NA	False	NA	NA	False	NA	NA	NA	100633169	100633355	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_100633200_100633400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084878	chr7	+	205	1	Intergenic	novelGene_331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATAAATCCCTAGAAATT	NA	False	NA	NA	False	AAAAAG	-5	NA	101446549	101446754	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_101446500_101446800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084888	chr7	-	4740	29	FSM	ENSMUSG00000032737.14	ENSMUST00000165052.8	4730	29	-18	8	-18	6	multi-exon	FALSE	canonical	3	95	junction_28	22.1558429663829	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAAGGAAAACCATTTTG	NA	False	NA	-16	True	AATAAA	-28	NA	101487028	101471853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_101472611_101472719_101472854_101473099_101473767_101475167_101475309_101475399_101475479_101475712_101475869_101475960_101476049_101476457_101476547_101476646_101476761_101477405_101477496_101477610_101477693_101477967_101478057_101478155_101478256_101478360_101478500_101478782_101478880_101479259_101479378_101479881_101480079_101480177_101480281_101480573_101480681_101480765_101480917_101481019_101481119_101481234_101481325_101481427_101481522_101481681_101481823_101482056_101482178_101482742_101482894_101482981_101483046_101485777_101486159_101486927
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084913	chr7	+	811	6	NIC	ENSMUSG00000030649.19	novel	3103	6	NA	NA	-8	1	combination_of_known_junctions	FALSE	canonical	3	98	junction_2	189.568562794573	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTATTCCCTGTTTGTTG	7809	False	NA	26	True	AATAAA	-26	NA	101545606	101548752	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_101545658_101546939_101547025_101547153_101547279_101547760_101547821_101548106_101548245_101548400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084948	chr7	-	2256	9	FSM	ENSMUSG00000070426.13	ENSMUST00000096639.12	2249	9	-7	0	-7	0	multi-exon	FALSE	canonical	3	288	junction_4	49.7203114933927	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCCTTTTTTTTTTTGCC	NA	False	NA	0	True	AATAAA	-34	NA	101714372	101668343	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714272
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084969	chr7	+	3200	11	Fusion	ENSMUSG00000100254.2_ENSMUSG00000099481.7	novel	2298	11	NA	NA	-10	-4	intron_retention	FALSE	canonical	2	17	junction_2	28.6462912084619	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGTATGTGTTGCCGATC	NA	False	NA	NA	False	AATAAA	-12	NA	101714707	101732965	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr7_+_101715012_101719103_101719199_101720425_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000084996	chr7	+	204	1	Intergenic	novelGene_332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGATTAAGAACTCAAGAAG	NA	False	NA	NA	False	NA	NA	NA	101798106	101798310	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_101798100_101798300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085000	chr7	+	2036	7	FSM	ENSMUSG00000030990.19	ENSMUST00000033292.14	1201	7	-34	-801	7	-3	multi-exon	FALSE	canonical	3	107	junction_5	27.0657635317306	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGAGGTAGGTATGTTGC	601	False	NA	13	True	AATAAA	-20	NA	101872241	101887771	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085013	chr7	+	2150	7	NIC	ENSMUSG00000030990.19	novel	1201	7	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	61.1201003489578	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGGTAGGTATGTTGCT	635	False	NA	14	True	AATAAA	-21	NA	101872275	101887772	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_101872505_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085017	chr7	+	2133	7	NIC	ENSMUSG00000030990.19	novel	2034	7	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	67.2210284558833	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTGAGGTAGGTATGTT	637	False	NA	11	True	AATAAA	-18	NA	101872277	101887769	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_101872505_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085063	chr7	+	3532	9	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	8	-245	intron_retention	TRUE	canonical	0	0	junction_3	304.950995038547	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTCTTCTTACTCTGTA	NA	False	NA	16	True	AATAAA	-17	NA	103868009	103884114	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_103868091_103874713_103875188_103876015_103876116_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085066	chr7	+	3510	9	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	21	-248	intron_retention	FALSE	canonical	0	0	junction_3	304.950995038547	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	13	True	AATAAA	-14	NA	103868022	103884111	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_103868091_103874713_103875188_103876015_103876116_103877358_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085081	chr7	+	3577	9	NNC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	-20	-248	intron_retention	FALSE	canonical	0	0	junction_3	322.606934790621	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	13	True	AATAAA	-14	NA	103868615	103884111	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_103868745_103874713_103875188_103876015_103876116_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085108	chr7	-	2823	12	NIC	ENSMUSG00000044465.20	novel	10853	12	NA	NA	-6	0	combination_of_known_junctions	TRUE	canonical	3	18	junction_3	116.391402937184	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGCTCATTCTTCTTT	NA	False	NA	-10	True	TATAAA	-14	NA	105049224	105027816	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_105028337_105030286_105030450_105030605_105030785_105033581_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085119	chr7	+	197	1	Intergenic	novelGene_333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATGCACGAGCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	105167804	105168001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_105167800_105168000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085123	chr7	+	2385	6	FSM	ENSMUSG00000037049.10	ENSMUST00000046983.10	2412	6	27	0	27	0	multi-exon	FALSE	canonical	3	35	junction_2	5.53534100123922	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTCCTATTTCTTCTTCC	NA	False	NA	11	True	AATAAA	-21	NA	105203593	105207596	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_105204045_105204428_105205202_105205713_105205886_105206124_105206202_105206556_105206703_105206830
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085154	chr7	-	1994	8	NIC	ENSMUSG00000030881.16	novel	3275	8	NA	NA	31	1	intron_retention	FALSE	canonical	3	37	junction_3	33.0787557449287	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGTGAGGTCAATTTGT	NA	False	NA	NA	False	AATAAA	-17	NA	105289592	105284826	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_105285601_105286017_105286193_105286327_105286486_105286858_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085188	chr7	+	1811	13	FSM	ENSMUSG00000030890.17	ENSMUST00000033182.10	1795	13	-15	-1	-15	1	multi-exon	FALSE	canonical	3	265	junction_1	33.4937805171846	268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGTGTGGGGACAGAGGGA	NA	False	NA	29	True	AATAAA	-19	NA	105385783	105392133	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_105385924_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085199	chr7	-	3552	13	FSM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	6	0	6	0	multi-exon	FALSE	canonical	3	275	junction_12	25.3212690571912	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTTGTATTGTAAATGT	NA	False	NA	NA	False	NA	NA	NA	105401436	105394017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188_105401261_105401377
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085232	chr7	+	3477	6	NIC	ENSMUSG00000062542.12	novel	3817	7	NA	NA	-14	1	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	62.0064512772663	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTCGTTGTCTCATTAA	NA	False	NA	NA	False	AGTAAA	-17	NA	106969982	107147861	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_106970355_107035481_107036029_107101299_107101421_107103368_107103541_107105695_107105826_107145726
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085259	chr7	+	742	5	NIC	ENSMUSG00000046364.15	novel	526	4	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	6920.42061582965	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTTGCATCCTTCCTTG	NA	False	NA	7	True	ATTAAA	-19	NA	109118426	109120978	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_109118683_109118791_109118856_109119124_109119201_109119674_109119850_109120807
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085280	chr7	-	1692	5	FSM	ENSMUSG00000031021.14	ENSMUST00000033333.13	1703	5	11	0	11	0	multi-exon	FALSE	canonical	3	85	junction_4	15.7698287879102	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTTTCTGTTCTCCAG	NA	False	NA	2	True	AATAAA	-19	NA	109351475	109335040	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_109336199_109342753_109342889_109344516_109344626_109349219_109349312_109351277
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085285	chr7	+	201	1	Intergenic	novelGene_334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCTCCTGAAGTATAACT	NA	False	NA	NA	False	NA	NA	NA	109427846	109428047	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_109427800_109428000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085294	chr7	+	376	1	Intergenic	novelGene_335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCGGTAGTGTACGCCT	NA	False	NA	NA	False	NA	NA	NA	109584074	109584450	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_109584100_109584400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085304	chr7	+	3414	26	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	233.88532574747	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTCTTGATCTGATTGC	7239	False	NA	23	True	ATTAAA	-18	NA	109617521	109655324	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223_109654345_109655160
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085318	chr7	+	3021	16	NNC	ENSMUSG00000061079.15	novel	3003	16	NA	NA	-11	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	72.8924931358199	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTTTGTTTGTTTCATT	NA	False	NA	19	True	AATACA	-17	NA	109660905	109694601	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_109660987_109668694_109668810_109669684_109669778_109670578_109670663_109671325_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085320	chr7	+	3018	16	NNC	ENSMUSG00000061079.15	novel	2631	16	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	73.5768683456666	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTTTGTTTGTTTCATT	NA	False	NA	19	True	AATACA	-17	NA	109660905	109694601	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_109660987_109668694_109668810_109669684_109669778_109670578_109670663_109671328_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085330	chr7	+	3450	11	FSM	ENSMUSG00000031016.10	ENSMUST00000033326.10	3419	11	-22	-9	-22	9	multi-exon	TRUE	canonical	3	352	junction_6	26.6084573021436	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCACGGTGCCTGTTTTC	NA	False	NA	35	True	ATTAAA	-32	NA	109721230	109742502	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_109722133_109723662_109723869_109725013_109725075_109725202_109725376_109725907_109726030_109730035_109730183_109733961_109734058_109734844_109734931_109738355_109738527_109738768_109738915_109741162
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085335	chr7	+	1050	1	Genic_Genomic	ENSMUSG00000031016.10	novel	NA	NA	NA	NA	-17	-20208	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGCAGCCCCCCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	109721235	109722285	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr7_+_109721200_109722300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085338	chr7	+	3260	10	NIC	ENSMUSG00000031016.10	novel	3419	11	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_5	119.043409449383	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTAAATCTTCACGGTG	NA	False	NA	26	True	ATTAAA	-23	NA	109721264	109742493	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_109722133_109723662_109723869_109725013_109725075_109725202_109725376_109725907_109726030_109733961_109734058_109734844_109734931_109738355_109738527_109738768_109738915_109741162
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085348	chr7	+	4066	12	FSM	ENSMUSG00000031015.9	ENSMUST00000033325.9	4027	12	-32	-7	-32	7	multi-exon	FALSE	canonical	3	251	junction_6	36.1790771003727	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGTTACATTAATAAAATG	NA	False	NA	84	True	ATTAAA	-27	NA	109820885	109882720	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_109821117_109842590_109842732_109854941_109855116_109863086_109863315_109865042_109865190_109866988_109867098_109869106_109869289_109872466_109872575_109873841_109874009_109878386_109878586_109879773_109879871_109880437
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085355	chr7	-	3250	24	ISM	ENSMUSG00000038371.16	ENSMUST00000033058.14	7154	41	-2	57715	0	11519	5prime_fragment	TRUE	canonical	3	82	junction_16	12.0559502208573	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACACCTCCTTCCGGTAAG	NA	False	NA	NA	False	AAGAAA	-2	NA	110214129	109964943	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_-_109965105_109966387_109966516_109968598_109968795_109970790_109970865_109971702_109971876_109974778_109975036_109977170_109977342_109998502_109998572_110019998_110020149_110021651_110021762_110027394_110027600_110038046_110038146_110040156_110040286_110040658_110040773_110041496_110041575_110046220_110046335_110049101_110049211_110051035_110051169_110060343_110060450_110062062_110062174_110063794_110063915_110088427_110088566_110159464_110159554_110213913
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085370	chr7	+	4287	25	FSM	ENSMUSG00000005609.17	ENSMUST00000005749.6	4300	25	13	0	13	0	multi-exon	FALSE	canonical	3	158	junction_8	10.558616149856	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGTGCCTGTGTGTCCTCT	512	False	NA	31	True	AATAAA	-17	NA	110628170	110655584	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508_110651667_110652588_110652686_110653020_110653134_110654565
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085380	chr7	-	4918	21	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	-28	-1204	-15	1204	intron_retention	FALSE	canonical	3	1102	junction_8	1132.63140517999	597	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGTTTTTTCTTCATTTG	NA	False	NA	-4	True	AATAAA	-16	NA	110682252	110669934	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085400	chr7	-	3724	21	NIC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	1	intron_retention	FALSE	canonical	3	102	junction_19	1345.03087232227	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTTGTACATGACTTCAA	NA	False	NA	-18	True	AATAAA	-17	NA	110682213	110671137	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680713_110680841_110681991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085408	chr7	-	3784	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	0	intron_retention	FALSE	canonical	0	0	junction_1	1318.01154255335	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682213	110671138	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_110671956_110673031_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085410	chr7	-	3794	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	0	intron_retention	FALSE	canonical	0	0	junction_2	1326.2602443818	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682213	110671138	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_110671965_110673035_110673158_110673239_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085414	chr7	-	3799	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_10	1337.44149256397	43	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682227	110671138	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676060_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085415	chr7	-	3793	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	0	intron_retention	FALSE	canonical	0	0	junction_1	1318.01154255335	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682213	110671138	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_110671965_110673031_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085416	chr7	-	3727	22	NIC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	0	intron_retention	FALSE	canonical	3	147	junction_21	1306.04265608024	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682213	110671138	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680779_110681991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085417	chr7	-	3765	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	0	intron_retention	FALSE	canonical	3	76	junction_10	1322.53667310237	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682213	110671138	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676040_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085418	chr7	-	3784	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	0	intron_retention	FALSE	canonical	0	0	junction_8	1333.77474156039	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682213	110671138	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674915_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085427	chr7	-	3807	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_21	1335.05458796053	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682227	110671138	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681987
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085460	chr7	-	3800	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	-1	intron_retention	FALSE	canonical	3	79	junction_3	1292.2405896336	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAGTTGTACATGACTTC	NA	False	NA	-20	True	AATAAA	-15	NA	110682213	110671139	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_110671965_110673035_110673158_110673244_110673469_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085496	chr7	-	3273	7	ISM	ENSMUSG00000030772.7	ENSMUST00000033036.7	3359	8	628	5	628	-5	3prime_fragment	FALSE	canonical	3	37	junction_5	9.03234926989282	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTCCATGGTATGGGT	NA	False	NA	-6	True	AATAAA	-18	NA	111757636	111715228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_-_111717638_111718554_111718712_111719594_111719740_111720796_111720890_111748167_111748252_111749817_111749956_111757389
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085509	chr7	+	2260	1	FSM	ENSMUSG00000098132.2	ENSMUST00000182858.2	3496	1	-4	1240	-4	-1240	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGACTGTTTACATTTCT	NA	False	NA	NA	False	GATAAA	-18	NA	112553164	112555424	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_112553200_112555400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085528	chr7	-	2585	11	FSM	ENSMUSG00000038187.15	ENSMUST00000047091.14	2581	11	-22	18	-22	-1	multi-exon	FALSE	canonical	3	112	junction_8	39.4138300600183	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGACCAACTTTATG	NA	False	NA	-17	True	AATAAA	-16	NA	112968568	112914850	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112950987_112951146_112964111_112964177_112968078_112968166_112968405
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085545	chr7	-	2279	6	FSM	ENSMUSG00000055723.7	ENSMUST00000069449.7	2275	6	-4	0	-4	0	multi-exon	FALSE	canonical	3	204	junction_1	27.4779911929529	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACGCTTGACGGCTCCTTT	NA	False	NA	-1	True	ATTAAA	-21	NA	113717020	113646016	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_113647487_113649535_113649655_113657774_113657884_113658161_113658265_113659566_113659655_113716630
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085552	chr7	-	3357	22	FSM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	-5	-6	-5	6	multi-exon	FALSE	canonical	3	435	junction_12	34.3731688854697	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGGGATTTTTTTTTTT	NA	False	NA	-1	True	AATAAA	-22	NA	113853951	113814787	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085572	chr7	-	946	5	FSM	ENSMUSG00000030669.14	ENSMUST00000032906.11	994	5	48	0	-2	0	multi-exon	FALSE	canonical	3	77	junction_2	7.39932429347437	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTCTTTGCTGTTACT	2082	False	NA	0	True	ATTAAA	-27	NA	114235544	114230712	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235446
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085581	chr7	-	903	1	FSM	ENSMUSG00000086583.4	ENSMUST00000071641.5	1019	1	0	116	0	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCGGGTTGCTCAAAAGAA	NA	False	NA	NA	False	AAGAAA	-1	NA	114305470	114304567	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_114304600_114305500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085590	chr7	+	1426	5	FSM	ENSMUSG00000030663.13	ENSMUST00000032899.12	1479	5	51	2	11	1	multi-exon	FALSE	canonical	3	1664	junction_2	78.2527954772224	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGATTGTGATGCCTTT	NA	False	NA	27	True	AATAAA	-18	NA	115692586	115704443	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085605	chr7	+	204	1	Intergenic	novelGene_336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGAAATCCTGCAAGCCA	NA	False	NA	NA	False	NA	NA	NA	115926969	115927173	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_115927000_115927200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085613	chr7	-	542	5	FSM	ENSMUSG00000008683.17	ENSMUST00000131374.8	5179	5	-21	4658	-21	34	multi-exon	FALSE	canonical	3	7367	junction_4	1521.10568337641	1092	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGGCTGTGCTGACTG	NA	False	NA	1	True	NA	NA	NA	117715432	117708252	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117715358
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085624	chr7	-	2087	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	85	-1	-1	1	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	623	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTTTGTTAACTCTGAG	NA	False	NA	-10	True	ATTAAA	-26	NA	117728800	117718112	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085661	chr7	+	3118	31	FSM	ENSMUSG00000030982.20	ENSMUST00000059390.13	5097	31	504	1475	-2	2	multi-exon	TRUE	canonical	3	302	junction_1	75.0223744403406	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTCTCGGTGTGTGTT	NA	False	NA	12	True	ATTAAA	-23	NA	118339952	118440714	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118403326_118403408_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085684	chr7	-	4522	4	FSM	ENSMUSG00000008734.10	ENSMUST00000008878.10	4518	4	-5	1	-5	-1	multi-exon	FALSE	canonical	3	70	junction_1	4.64279609239471	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAAGATGCGTGGTAGCT	NA	False	NA	-4	True	AATAAA	-14	NA	118594439	118571270	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_118574427_118575735_118575894_118582837_118583869_118594262
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085690	chr7	-	2684	4	FSM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	6	-1	6	1	multi-exon	FALSE	canonical	3	902	junction_1	48.9239773072014	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCATTCTTTTTTATTC	NA	False	NA	0	True	AATAAA	-21	NA	119320015	119314314	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_119316293_119317244_119317494_119318349_119318525_119319733
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085696	chr7	+	2344	1	FSM	ENSMUSG00000100153.3	ENSMUST00000118909.2	972	1	-227	-1145	-25	18	mono-exon	FALSE	NA	NA	NA	NA	NA	488	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAGCTTGGGAATGACA	NA	False	NA	NA	False	NA	NA	NA	119339123	119341467	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_119339100_119341500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085704	chr7	+	1471	2	FSM	ENSMUSG00000100153.3	ENSMUST00000207161.2	1437	2	-16	-18	-16	18	multi-exon	FALSE	canonical	3	469	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAGCTTGGGAATGACA	NA	False	NA	NA	False	NA	NA	NA	119339132	119341467	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_119340294_119341157
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085750	chr7	+	3467	22	NNC	ENSMUSG00000030880.15	novel	4194	21	NA	NA	-13	3	intron_retention	TRUE	canonical	0	0	junction_21	76.9953616413724	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTCAGAATGTGGTATTT	NA	False	NA	NA	False	NA	NA	NA	120516953	120546658	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698_120545544_120546326
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085763	chr7	-	2541	5	FSM	ENSMUSG00000030878.12	ENSMUST00000033169.9	2525	5	-16	0	-16	0	multi-exon	FALSE	canonical	3	32	junction_2	6.89202437604511	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTCTACGTCTGTTGTTT	NA	False	NA	NA	False	AATAAA	-23	NA	120581551	120556258	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_120558021_120559314_120559480_120559732_120559882_120569548_120569662_120581199
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085776	chr7	-	2905	17	FSM	ENSMUSG00000034951.11	ENSMUST00000057576.8	2902	17	0	-3	0	3	multi-exon	TRUE	canonical	3	174	junction_8	14.1585607937389	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGTTTCCTTCTTCTCTG	8924	False	NA	3	True	AATAAA	-20	NA	121580934	121522058	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_121522692_121524646_121524791_121528409_121528525_121529752_121529837_121534880_121535022_121536176_121536364_121540392_121540459_121543000_121543118_121548967_121549123_121550385_121550514_121555152_121555352_121562360_121562484_121563423_121563507_121570502_121570672_121576489_121576607_121576838_121576988_121580639
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085801	chr7	-	2044	9	FSM	ENSMUSG00000030871.12	ENSMUST00000033159.4	2046	9	169	-167	-24	167	multi-exon	FALSE	canonical	3	113	junction_5	13.5317912709294	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGTGCGTCATTACCAAG	NA	False	NA	1	True	NA	NA	NA	121666317	121637876	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121645956_121647324_121647798_121654781_121654972_121662151_121662308_121666127
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085824	chr7	-	745	5	NNC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_1	2197.68361007676	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTTTCTCAATTAGTTT	6393	False	NA	-11	True	AATAAA	-16	NA	121701074	121690053	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_121690291_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085828	chr7	-	2653	13	FSM	ENSMUSG00000044702.14	ENSMUST00000106469.8	2559	13	-94	0	8	0	multi-exon	FALSE	canonical	3	13	junction_9	41.4242950721219	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732161	121706484	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121727360_121727667_121728145_121728240_121728896_121728957_121731942
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085849	chr7	+	2224	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	-12	-13	-12	13	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	1260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTGGTCTTGTATTTCT	NA	False	NA	69	True	ATTAAA	-27	NA	121758649	121769109	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085865	chr7	+	180	1	Intergenic	novelGene_337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTGACAGAGGGAGACACC	NA	False	NA	NA	False	NA	NA	NA	122797214	122797394	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_122797200_122797400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085871	chr7	-	3418	21	NNC	ENSMUSG00000030766.16	novel	3336	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	48.4230317101274	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTAATTCTTAGAGGCA	NA	False	NA	-1	True	ATTAAA	-25	NA	122969138	122878493	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_122879340_122882999_122883049_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968972
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085898	chr7	+	2399	8	FSM	ENSMUSG00000030752.9	ENSMUST00000033010.9	2389	8	0	-10	0	10	multi-exon	FALSE	canonical	3	41	junction_7	4.74664220738176	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCTTTAACCAGACTCC	NA	False	NA	NA	False	AATAAA	-37	NA	125043847	125061451	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_125043965_125051399_125051901_125054262_125054430_125055604_125055738_125056135_125056181_125059046_125059197_125060086_125060180_125060258
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085914	chr7	-	4540	24	FSM	ENSMUSG00000000131.16	ENSMUST00000009344.16	4455	24	-83	-2	10	1	multi-exon	TRUE	canonical	3	58	junction_14	102.701045398272	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATGGGGCATCTTTGTA	NA	False	NA	NA	False	AATAAA	-29	NA	125799663	125700885	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_125701563_125703875_125704107_125704272_125704372_125706242_125706405_125707623_125707796_125707957_125708073_125709085_125709242_125711923_125712114_125712828_125712976_125714979_125715125_125719528_125719622_125723543_125723704_125727398_125727469_125728719_125728810_125730197_125730307_125739736_125739847_125748405_125748533_125751997_125752452_125755895_125755974_125760032_125760193_125768300_125768499_125770201_125770315_125773329_125773421_125799070
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085938	chr7	-	1261	12	FSM	ENSMUSG00000030742.8	ENSMUST00000032997.8	1235	12	-26	0	10	0	multi-exon	FALSE	canonical	3	34	junction_9	5.32264769756525	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCGTTGTCTTCTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	125968732	125962998	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967357_125967388_125967470_125967536_125967666_125967755_125967973_125968009_125968113_125968142_125968319
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085953	chr7	-	2119	13	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	-8	0	combination_of_known_junctions	TRUE	canonical	3	25	junction_12	122.006830409886	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	-6	True	AATAAA	-14	NA	125976601	125969238	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008_125976218_125976289
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085976	chr7	-	3125	6	NIC	ENSMUSG00000030722.8	novel	3388	8	NA	NA	9	1	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	94.5101052798059	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGGTTTCTGTCTTTG	NA	False	NA	-5	True	AATAAA	-21	NA	125995900	125982024	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_125984312_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085980	chr7	-	3387	8	NNC	ENSMUSG00000030722.8	novel	3388	8	NA	NA	12	1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_7	83.1983123847682	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGGTTTCTGTCTTTG	NA	False	NA	-5	True	AATAAA	-21	NA	125995897	125982024	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995517
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000085991	chr7	+	2247	12	NIC	ENSMUSG00000030727.13	novel	2234	13	NA	NA	-16	9	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	55.1880331980083	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGCCTGCAAGCCCCGT	NA	False	NA	21	True	AATAAA	-24	NA	126028221	126045082	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043694_126043751_126043991_126044109_126044468
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086003	chr7	-	2999	10	NIC	ENSMUSG00000030733.11	novel	3089	11	NA	NA	-6	1	combination_of_known_junctions	FALSE	canonical	3	197	junction_2	41.0918873973506	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGTGGCTGATATTTGG	8171	False	NA	0	True	AATAAA	-29	NA	126074308	126066164	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126074167
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086015	chr7	-	3026	10	NIC	ENSMUSG00000030733.11	novel	3393	10	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_2	75.3988571154828	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGCTGTGGCTGATATT	8194	False	NA	-3	True	AATAAA	-26	NA	126074285	126066167	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_126066946_126067121_126067222_126067591_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126074167
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086026	chr7	+	281	1	Intergenic	novelGene_338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCAAATGGCTATTGATAA	NA	False	NA	NA	False	NA	NA	NA	126076350	126076631	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_126076400_126076600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086038	chr7	-	4041	22	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	0	0	intron_retention	FALSE	canonical	3	143	junction_21	199.099617268271	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTATGGGTTTGATTC	7242	False	NA	0	True	NA	NA	NA	126101272	126090879	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101124
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086068	chr7	-	3940	22	NIC	ENSMUSG00000032637.16	novel	4023	22	NA	NA	102	-10	intron_retention	FALSE	canonical	3	137	junction_12	256.469311880599	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTAAACTAACTTAACCT	7344	False	NA	-17	True	NA	NA	NA	126101170	126090896	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101124
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086072	chr7	-	3401	21	FSM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	-18	0	-18	0	multi-exon	FALSE	canonical	3	1924	junction_14	277.99846672239	811	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGGAGTTTCTAAAGGT	NA	False	NA	NA	False	NA	NA	NA	126165601	126145626	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086095	chr7	-	1704	15	FSM	ENSMUSG00000030720.17	ENSMUST00000032962.11	2386	15	-4	686	-4	0	multi-exon	FALSE	canonical	3	116	junction_11	19.7815880173912	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	126182423	126171257	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086101	chr7	-	1947	17	FSM	ENSMUSG00000030720.17	ENSMUST00000116269.9	2487	17	-146	686	-119	0	multi-exon	FALSE	canonical	3	21	junction_16	42.5708508694623	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	126183598	126171257	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086122	chr7	-	665	1	FSM	ENSMUSG00000066175.3	ENSMUST00000084587.2	348	1	-3	-314	-3	314	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTAGCTACATCTTTGGA	NA	False	NA	NA	False	AATAAA	-18	NA	126248745	126248080	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_126248100_126248700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086205	chr7	-	1595	10	FSM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	-44	-2	-15	0	multi-exon	FALSE	canonical	3	862	junction_9	8041.23258932084	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398357	126394405	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086212	chr7	-	1347	9	NIC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	287	junction_8	6630.75357708308	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126399219	126394405	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399173
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086264	chr7	+	2052	7	FSM	ENSMUSG00000042606.10	ENSMUST00000037248.10	2766	7	466	248	-1	211	multi-exon	FALSE	canonical	3	171	junction_2	39.0498257216199	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCCCAAACCGTCATGC	1942	False	NA	53	True	AATAAA	-27	NA	126461609	126464301	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_126461689_126461771_126461893_126461989_126462099_126462340_126463423_126463491_126463658_126463734_126463834_126463905
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086274	chr7	-	4976	16	FSM	ENSMUSG00000059981.13	ENSMUST00000117394.2	4985	16	11	-2	11	2	multi-exon	TRUE	canonical	3	97	junction_14	9.03228776236797	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGCCCAGGCTGCCTC	8444	False	NA	NA	False	NA	NA	NA	126483864	126468672	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_126470814_126471077_126471282_126471368_126471735_126473469_126473629_126473820_126474106_126474228_126474397_126475024_126475107_126475197_126475292_126477894_126477987_126478091_126478206_126478362_126478460_126478578_126478625_126479223_126479326_126479419_126479492_126479668_126479836_126483077
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086294	chr7	-	2820	15	FSM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	17	0	17	0	multi-exon	FALSE	canonical	3	72	junction_9	19.4401226165613	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTTTCCCTCTTAT	NA	False	NA	0	True	AATAAA	-21	NA	126613776	126586031	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126613690
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086325	chr7	-	2246	4	ISM	ENSMUSG00000030678.8	ENSMUST00000032916.6	2347	5	178	-4	178	0	intron_retention	FALSE	canonical	3	463	junction_1	152.057737572133	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAGTTCCTAAGTTAT	508	False	NA	-27	True	AATAAA	-18	NA	126625446	126621301	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_-_126622341_126623615_126623788_126624047_126624112_126624475
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086327	chr7	-	2476	5	NNC	ENSMUSG00000030678.8	novel	2650	6	NA	NA	178	0	intron_retention	FALSE	canonical	3	387	junction_1	181.38770630889	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAGTTCCTAAGTTAT	508	False	NA	-27	True	AATAAA	-18	NA	126625446	126621301	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_126622341_126622648_126622879_126623615_126623788_126624047_126624112_126624475
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086360	chr7	-	2119	14	FSM	ENSMUSG00000030677.9	ENSMUST00000032915.8	2115	14	0	-4	0	2	multi-exon	FALSE	canonical	3	689	junction_8	49.8885147636753	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCCTGGTTTTTGAGGAT	7925	False	NA	-2	True	AATACA	-17	NA	126641643	126626898	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086363	chr7	-	2212	13	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-30	1	intron_retention	FALSE	canonical	3	712	junction_7	45.9422191453569	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCCTGGTTTTTGAGGA	7957	False	NA	-3	True	AATACA	-16	NA	126641611	126626899	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086439	chr7	+	751	6	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1102	10	31	0	3prime_fragment	FALSE	canonical	3	600	junction_1	477.333007448678	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	4062	False	NA	32	True	AATAAA	-24	NA	126811881	126813460	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086475	chr7	-	2233	1	FSM	ENSMUSG00000049091.8	ENSMUST00000082428.6	2177	1	-45	-11	-45	11	mono-exon	FALSE	NA	NA	NA	NA	NA	684	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGTTCTGTGGATCAC	2796	False	NA	3	True	AATAAA	-30	NA	126873272	126871039	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_126871000_126873300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086486	chr7	-	2673	3	FSM	ENSMUSG00000054381.6	ENSMUST00000067425.6	2684	3	7	4	7	-4	multi-exon	FALSE	canonical	3	22	junction_2	4	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATAAATGATTTCTGCT	922	False	NA	NA	False	NA	NA	NA	126975215	126971712	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_126973871_126974560_126974675_126974814
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086502	chr7	-	1130	4	NIC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_2	9.62635271879577	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6899	False	NA	-4	True	ATTAAA	-17	NA	127021225	127018138	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_127018814_127019181_127019278_127020576_127020691_127020980
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086512	chr7	+	216	1	Genic_Genomic	ENSMUSG00000108483.2	novel	NA	NA	NA	NA	4798	43	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCACCATTAGAGCTGGG	NA	False	NA	NA	False	NA	NA	NA	127038391	127038607	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr7_+_127038400_127038600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086517	chr7	-	1999	3	FSM	ENSMUSG00000048921.12	ENSMUST00000053392.11	3621	3	6	1616	6	3	multi-exon	FALSE	canonical	3	47	junction_1	4.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTCTTAAAATAATATGG	4363	False	NA	0	True	ATTAAA	-15	NA	127048324	127042923	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_127044310_127047534_127047649_127047825
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086522	chr7	+	2100	12	ISM	ENSMUSG00000030822.16	ENSMUST00000106292.8	2175	13	641	-5	-7	5	3prime_fragment	FALSE	canonical	3	60	junction_1	50.8389126685683	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTCCTTTGTGCCTCCAG	NA	False	NA	14	True	TATAAA	-19	NA	127070183	127075936	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_127070292_127071077_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086530	chr7	+	2290	12	NIC	ENSMUSG00000030822.16	novel	2402	11	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	65.961797107765	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGACTCCTTTGTGC	NA	False	NA	8	True	TATAAA	-13	NA	127070188	127075930	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_127070292_127070876_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086538	chr7	+	2554	11	FSM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	-126	-26	-85	25	multi-exon	FALSE	canonical	3	200	junction_10	17.7132718603876	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGTTTGAAATCAATTAA	NA	False	NA	34	True	TATAAA	-39	NA	127070535	127075956	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086562	chr7	+	1970	3	FSM	ENSMUSG00000030815.12	ENSMUST00000151908.8	1918	3	-21	-31	3	31	multi-exon	FALSE	canonical	3	119	junction_1	14	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAATTCCATCCAAAATCC	NA	False	NA	NA	False	NA	NA	NA	127172554	127178489	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_127172629_127173025_127173139_127176706
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086571	chr7	+	4134	20	FSM	ENSMUSG00000030816.9	ENSMUST00000205694.2	5279	20	-47	1192	-47	13	multi-exon	FALSE	canonical	3	259	junction_5	49.1177002358039	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTCTAACCTGAGTCTC	NA	False	NA	34	True	AATAAA	-35	NA	127187891	127202779	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127189886_127190486_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195140_127195226_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086578	chr7	+	4114	20	NNC	ENSMUSG00000030816.9	novel	5279	20	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_5	86.3204427500525	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGTCCATTTGGTCTAAC	NA	False	NA	25	True	AATAAA	-26	NA	127187935	127202770	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127189886_127190453_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195140_127195226_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086653	chr7	-	3176	3	FSM	ENSMUSG00000049728.15	ENSMUST00000054415.12	5768	3	-8	2600	-8	70	multi-exon	FALSE	canonical	3	42	junction_2	4	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGCTTTGTTTAGC	NA	False	NA	NA	False	ACTAAA	-37	NA	127476008	127464818	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_127466536_127466927_127467597_127475218
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086697	chr7	+	1838	15	FSM	ENSMUSG00000030795.19	ENSMUST00000106251.10	5536	15	30	3668	-3	1	multi-exon	FALSE	canonical	3	619	junction_3	208.17746550205	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTTCCCCCAGTTTACT	1180	False	NA	38	True	ATTAAA	-21	NA	127566658	127581205	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571009_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086698	chr7	+	1834	15	FSM	ENSMUSG00000030795.19	ENSMUST00000077609.12	1831	15	-3	0	-3	0	multi-exon	FALSE	canonical	3	245	junction_3	273.376618440941	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	1180	False	NA	37	True	ATTAAA	-20	NA	127566658	127581204	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571012_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086704	chr7	+	2391	6	FSM	ENSMUSG00000030795.19	ENSMUST00000174196.8	2374	6	-4	-13	-3	13	multi-exon	FALSE	canonical	3	619	junction_3	88.8603398598047	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACCCTTTTGTAGCCGTT	1180	False	NA	NA	False	NA	NA	NA	127566658	127573512	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571009_127571155_127571288_127571477_127571725
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086744	chr7	+	675	1	FSM	ENSMUSG00000108608.2	ENSMUST00000205523.2	195	1	-36	-444	-36	300	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAATTCCCGTGGAGCCC	NA	False	NA	NA	False	NA	NA	NA	127942154	127942829	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_127942200_127942800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086759	chr7	+	2614	4	FSM	ENSMUSG00000030847.9	ENSMUST00000033136.9	2562	4	-52	0	-52	0	multi-exon	FALSE	canonical	3	128	junction_2	8.2192186706253	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTTGTGGTTTCTAA	7090	False	NA	17	True	AATAAA	-22	NA	128125287	128148705	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_128125769_128141696_128142036_128143530_128143933_128147313
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086821	chr7	+	2065	9	FSM	ENSMUSG00000006205.14	ENSMUST00000006367.8	2041	9	-26	2	-26	-2	multi-exon	FALSE	canonical	3	73	junction_3	16.015617378047	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTGGCGTGCTTCTTTT	6596	False	NA	17	True	ATTAAA	-18	NA	130537906	130587388	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_130538474_130563242_130563343_130563702_130563908_130581030_130581226_130581681_130581715_130583386_130583502_130583966_130584025_130585389_130585486_130586692
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086826	chr7	-	2238	6	NNC	ENSMUSG00000040177.11	novel	6773	6	NA	NA	0	476	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	35.7737333807921	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACGTTGTTTCTTCTTTTT	NA	False	NA	1	True	AATAGA	-21	NA	130964439	130944438	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_130945534_130952379_130952832_130959184_130959396_130962617_130962691_130963461_130963666_130964236
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086839	chr7	+	690	1	FSM	ENSMUSG00000063179.14	ENSMUST00000207419.2	675	1	0	-15	0	15	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTAAAACCAGAATCTGTA	NA	False	NA	NA	False	AAGAAA	-25	NA	130972884	130973574	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_130972900_130973600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086901	chr7	+	2885	9	FSM	ENSMUSG00000030965.20	ENSMUST00000084497.12	2892	9	12	-5	0	5	multi-exon	FALSE	canonical	3	195	junction_8	19.6273883896967	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTAGTGTCTGTCTTAG	NA	False	NA	21	True	AATAAA	-23	NA	132460965	132486845	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257_132480343_132482495_132482611_132484763
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086932	chr7	+	4484	25	FSM	ENSMUSG00000039990.17	ENSMUST00000051169.13	5424	25	150	790	0	2	multi-exon	FALSE	canonical	3	128	junction_10	22.9037463577953	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTAGTTCCCACTTGC	NA	False	NA	8	True	AATAAA	-21	NA	133239421	133273910	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_133239653_133240635_133240845_133242408_133242476_133243022_133243149_133245376_133245502_133245721_133245879_133248718_133248821_133249073_133249196_133249914_133250027_133252006_133252155_133252229_133252339_133252752_133252865_133253661_133253923_133255615_133255688_133255985_133256137_133258223_133258413_133258696_133258898_133260154_133260374_133261799_133262024_133263511_133263671_133263809_133263960_133265089_133265244_133267596_133267713_133269268_133269421_133273094
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086941	chr7	-	1630	10	FSM	ENSMUSG00000030979.14	ENSMUST00000106145.10	1644	10	10	4	0	-4	multi-exon	FALSE	canonical	3	14	junction_9	18.4477908610847	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGACTGATCTGAGTATGG	NA	False	NA	NA	False	NA	NA	NA	133310788	133288088	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310652
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086957	chr7	-	2978	12	FSM	ENSMUSG00000030986.14	ENSMUST00000033290.12	2955	12	-14	-9	-14	9	multi-exon	FALSE	canonical	3	247	junction_11	48.5725154403017	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTTCTTGGTAATTACA	NA	False	NA	0	True	AATAAA	-28	NA	133378546	133322661	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133378330
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086970	chr7	-	2881	12	FSM	ENSMUSG00000030986.14	ENSMUST00000140593.9	2998	12	121	-4	121	0	multi-exon	FALSE	canonical	3	66	junction_11	95.5958261822716	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTCAATGGGTTTCTTG	NA	False	NA	-9	True	AATAAA	-19	NA	133361877	133322670	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133361749
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086977	chr7	-	2872	11	ISM	ENSMUSG00000030986.14	ENSMUST00000140593.9	2998	12	235	-2	-205	-2	intron_retention	FALSE	canonical	3	326	junction_7	30.1875802276367	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTCTTCAATGGGTTTCT	NA	False	NA	-11	True	AATAAA	-17	NA	133361763	133322672	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000086997	chr7	+	209	1	Intergenic	novelGene_339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTGAATCACATTCCTAAC	7713	False	NA	NA	False	TTTAAA	-10	NA	135404059	135404268	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_135404100_135404300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087014	chr7	+	1295	12	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	-7	-407	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_4	1395.61737871402	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039376	137069916	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060571_137060623_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087018	chr7	+	1237	11	FSM	ENSMUSG00000031068.9	ENSMUST00000064404.8	1685	11	41	407	0	-407	multi-exon	FALSE	canonical	3	3305	junction_4	243.181434324251	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039383	137069916	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087035	chr7	+	2088	9	FSM	ENSMUSG00000041769.14	ENSMUST00000041097.13	2081	9	-7	0	-7	0	multi-exon	FALSE	canonical	3	482	junction_4	89.4111814875522	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	20	True	AATAAA	-34	NA	138448080	138484786	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_138448245_138448340_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087043	chr7	+	1941	8	FSM	ENSMUSG00000041769.14	ENSMUST00000155672.8	1938	8	0	-3	0	0	multi-exon	FALSE	canonical	3	482	junction_3	92.005767343628	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	20	True	AATAAA	-34	NA	138448323	138484786	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087053	chr7	+	2643	14	FSM	ENSMUSG00000025478.16	ENSMUST00000026551.15	3552	14	0	909	0	0	multi-exon	FALSE	canonical	1	1	junction_6	3.36181128975572	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGGTTAGAAACTGCCT	NA	False	NA	NA	False	NA	NA	NA	138665916	138681711	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_138666078_138669425_138669515_138670074_138670260_138671777_138671943_138673521_138673584_138673676_138673758_138674309_138674379_138674772_138674894_138676083_138676241_138676582_138676725_138677737_138677909_138678385_138678566_138679655_138679822_138680817
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087074	chr7	+	2859	16	FSM	ENSMUSG00000025477.15	ENSMUST00000106098.8	2826	16	-31	-2	-31	2	multi-exon	TRUE	canonical	3	132	junction_13	16.0850517216728	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTGCTTATTCTCCTG	NA	False	NA	21	True	AATAAA	-22	NA	138968993	139159570	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_138969381_139033969_139034012_139057910_139058012_139061547_139061636_139091323_139091388_139096546_139096651_139103752_139103806_139105577_139105698_139118094_139118180_139138789_139138886_139138979_139139055_139147279_139147354_139154859_139154972_139157265_139157335_139158097_139158186_139158269
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087089	chr7	+	1291	1	NIC	ENSMUSG00000047751.10	novel	1227	2	NA	NA	33	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTGAATGAATTCGGAC	NA	False	NA	NA	False	AATAAA	-20	NA	139523734	139525025	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_139523700_139525000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087098	chr7	-	3085	18	FSM	ENSMUSG00000025474.10	ENSMUST00000026547.9	2960	18	-84	-41	-18	0	multi-exon	FALSE	canonical	3	147	junction_17	73.93539684464	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGGCTCAATGATTTC	NA	False	NA	NA	False	NA	NA	NA	139616263	139575867	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087122	chr7	+	1098	6	FSM	ENSMUSG00000025470.12	ENSMUST00000168194.3	1076	6	-18	-4	3	4	multi-exon	FALSE	canonical	3	304	junction_1	28.032837887021	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTCTTCTTCATGTGTT	NA	False	NA	23	True	AATAAA	-20	NA	139616306	139620519	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139620155
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087140	chr7	-	732	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	140	junction_5	128.971934931597	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1936	False	NA	0	True	NA	NA	NA	139681889	139679382	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681707
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087156	chr7	+	235	1	Antisense	novelGene_ENSMUSG00000025465.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGATCTTTGCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	139693448	139693683	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chr7_+_139693400_139693700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087178	chr7	-	2603	3	FSM	ENSMUSG00000060314.14	ENSMUST00000106052.2	3851	3	-46	1294	0	-1294	multi-exon	FALSE	canonical	3	50	junction_1	4	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTAAGCATGTTGTTTT	NA	False	NA	NA	False	AAGAAA	-7	NA	140402091	140390895	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_140393228_140398500_140398628_140401947
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087244	chr7	-	569	2	Fusion	ENSMUSG00000025492.7_ENSMUSG00000060591.10	novel	655	2	NA	NA	128	-14	multi-exon	FALSE	canonical	3	74	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGGCAACTCTGGCTGTG	NA	False	NA	-26	True	AATAAA	-8	NA	140590555	140534763	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr7_-_140535087_140590309
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087311	chr7	+	2015	12	NIC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	15	552	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	88.9139243899021	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	6840	False	NA	11	True	AATAAA	-16	NA	140711228	140736067	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734850_140734910_140735246
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087320	chr7	+	1986	10	NIC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	20	552	combination_of_known_splicesites	FALSE	canonical	1	4	junction_2	99.4836049523789	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	6845	False	NA	11	True	AATAAA	-16	NA	140711233	140736067	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_140711431_140715221_140715324_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087330	chr7	-	1663	10	FSM	ENSMUSG00000038650.16	ENSMUST00000167493.9	1656	10	0	-7	0	5	multi-exon	FALSE	canonical	3	317	junction_9	147.871899850621	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTTGTCGTTCTTTGTGG	7992	False	NA	NA	False	ATTAAA	-21	NA	140752770	140740233	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140752654
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087337	chr7	-	1661	10	FSM	ENSMUSG00000038650.16	ENSMUST00000210314.2	1658	10	1	-4	1	4	multi-exon	FALSE	canonical	3	224	junction_9	176.376561249007	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCCTTGTCGTTCTTTGTG	NA	False	NA	NA	False	ATTAAA	-20	NA	140748601	140740234	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748486
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087343	chr7	-	1058	6	FSM	ENSMUSG00000025499.19	ENSMUST00000026572.11	2828	6	-48	1818	-3	3	multi-exon	FALSE	canonical	3	237	junction_1	141.994366085419	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGCTGGAAGTAGGA	NA	False	NA	1	True	AGTAAA	-21	NA	140773921	140770835	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_140771108_140771254_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087372	chr7	+	1513	6	NIC	ENSMUSG00000038618.13	novel	661	3	NA	NA	-12	0	combination_of_known_junctions	TRUE	canonical	3	36	junction_1	122.763186664407	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140796103	140798571	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_140796173_140796633_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087409	chr7	+	219	1	Intergenic	novelGene_340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTGGGGCTAGAGAGAT	7414	False	NA	NA	False	TTTAAA	-10	NA	140928354	140928573	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr7_+_140928400_140928600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087411	chr7	+	1288	8	FSM	ENSMUSG00000025503.6	ENSMUST00000026576.5	1229	8	-49	-10	-49	10	multi-exon	FALSE	canonical	3	3267	junction_3	222.11993450864	1677	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCACCGTCTTTGTCACCA	3791	False	NA	28	True	ATTAAA	-27	NA	140972062	140982891	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_140972232_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087422	chr7	+	834	1	FSM	ENSMUSG00000091083.5	ENSMUST00000182274.2	558	1	-123	-153	-123	153	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTGCCTCTTTAGGGA	NA	False	NA	NA	False	AATAAA	-38	NA	140986426	140987260	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_140986400_140987300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087442	chr7	-	3146	8	NIC	ENSMUSG00000019082.19	novel	3264	9	NA	NA	-9	0	intron_retention	TRUE	canonical	3	72	junction_7	23.6246153191876	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGCTTTAAGAGTCTGT	497	False	NA	-19	True	AATAAA	-18	NA	141017515	141009661	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087443	chr7	-	2562	10	FSM	ENSMUSG00000019082.19	ENSMUST00000019226.14	2811	10	244	5	-10	0	multi-exon	FALSE	canonical	3	72	junction_9	20.9708792800344	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGCTTTAAGAGTCTGT	-1	True	NA	-19	True	AATAAA	-18	NA	141017561	141009661	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087468	chr7	+	462	5	FSM	ENSMUSG00000025508.14	ENSMUST00000084434.11	964	5	267	235	6	0	multi-exon	FALSE	canonical	3	11307	junction_1	1806.73116428538	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	2384	False	NA	27	True	AATAAA	-20	NA	141027549	141031263	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_141027621_141027820_141027945_141028638_141028688_141030916_141031016_141031144
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087475	chr7	+	430	5	FSM	ENSMUSG00000025508.14	ENSMUST00000106004.8	421	5	-12	3	-12	-2	multi-exon	FALSE	canonical	3	34	junction_1	6154.22628666675	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGGCCTTTAAACATTT	2447	False	NA	24	True	AATAAA	-17	NA	141027612	141031260	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_141027655_141027820_141027945_141028638_141028688_141030916_141031016_141031144
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087482	chr7	+	2019	9	FSM	ENSMUSG00000025509.16	ENSMUST00000164016.8	2625	9	-34	640	-34	0	multi-exon	FALSE	canonical	3	56	junction_3	8.3132048573339	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCATGTTACCCTTGC	9911	False	NA	28	True	AATAAA	-29	NA	141035076	141040016	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_141035387_141037185_141037419_141037504_141037571_141037917_141038128_141038342_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087491	chr7	+	1790	8	FSM	ENSMUSG00000025510.15	ENSMUST00000177840.9	1708	8	-64	-18	-34	8	multi-exon	FALSE	canonical	3	214	junction_1	29.0537854500854	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTTGCTGACAGGACCT	NA	False	NA	16	True	NA	NA	NA	141047270	141051394	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_141047380_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087509	chr7	+	1455	8	FSM	ENSMUSG00000025511.16	ENSMUST00000026585.14	1466	8	11	0	11	0	multi-exon	FALSE	canonical	3	56	junction_1	68.6787850082111	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGAAGTTCTTTCATTT	3502	False	NA	45	True	NA	NA	NA	141055163	141073340	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_141055411_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087512	chr7	+	1690	7	FSM	ENSMUSG00000025511.16	ENSMUST00000239217.2	1157	7	-55	-478	-55	4	multi-exon	FALSE	canonical	3	206	junction_2	25.1241362482817	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTCTTTCATTTTCCA	599	False	NA	49	True	NA	NA	NA	141061921	141073344	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087567	chr7	+	1480	8	NNC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	-10	-4	at_least_one_novel_splicesite	FALSE	canonical	3	168	junction_6	2164.64777735317	21	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACTGCCAGACCTCTTC	NA	False	NA	38	True	AATAAA	-26	NA	142606520	142621667	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620887_142620971_142621048
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087585	chr7	+	1505	3	FSM	ENSMUSG00000045752.14	ENSMUST00000060433.10	1519	3	14	0	14	0	multi-exon	FALSE	canonical	3	158	junction_2	1	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGGCTTTTTCCGGGC	NA	False	NA	22	True	AATAAA	-21	NA	142622999	142624830	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_142623251_142623491_142623588_142623672
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087604	chr7	-	2318	16	FSM	ENSMUSG00000059119.10	ENSMUST00000072727.7	2285	16	-31	-2	-17	2	multi-exon	FALSE	canonical	3	502	junction_2	192.287354411741	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTTTTTTTGTTGTTTGA	NA	False	NA	1	True	ATTAAA	-22	NA	143102860	143067313	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087613	chr7	-	2280	15	FSM	ENSMUSG00000059119.10	ENSMUST00000208190.2	2259	15	-17	-4	-17	0	multi-exon	FALSE	canonical	3	471	junction_1	167.71624785905	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTTTTTTTGTTGTTT	NA	False	NA	-1	True	ATTAAA	-20	NA	143102860	143067315	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087623	chr7	-	2291	16	NNC	ENSMUSG00000059119.10	novel	2285	16	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	287.798926721804	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTGGTTTTTTTGTTGTT	NA	False	NA	-2	True	ATTAAA	-19	NA	143102832	143067316	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_143068375_143072586_143072623_143074116_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087666	chr7	-	2500	22	FSM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	-35	-3	-1	2	multi-exon	TRUE	canonical	3	1234	junction_21	93.4109735380392	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTCTGCCCTCTCAGC	NA	False	NA	0	True	AATAAA	-18	NA	143153828	143111440	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087669	chr7	-	2748	23	FSM	ENSMUSG00000010755.18	ENSMUST00000010899.14	3222	23	-1	475	-1	1	multi-exon	FALSE	canonical	3	290	junction_21	336.211639490553	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	-1	True	AATAAA	-17	NA	143153828	143111441	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087670	chr7	-	2458	22	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	316.06880189026	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	-1	True	AATAAA	-17	NA	143153793	143111441	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_143111744_143112864_143112949_143113385_143113436_143115591_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087672	chr7	-	2717	23	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	canonical	2	2	junction_3	433.306871675632	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	-1	True	AATAAA	-17	NA	143153793	143111441	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115591_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087673	chr7	-	2445	22	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_20	300.317345380695	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	-1	True	AATAAA	-17	NA	143153793	143111441	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140912_143142228_143142321_143153718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087684	chr7	-	2465	22	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	316.603753148848	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	-1	True	AATAAA	-17	NA	143153798	143111441	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_143111744_143112864_143112945_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087720	chr7	-	3242	7	Fusion	ENSMUSG00000010751.16_ENSMUSG00000037613.17	novel	1476	6	NA	NA	36	0	multi-exon	TRUE	canonical	0	0	junction_1	24.8378072032671	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTGGCTTGAATTGGCT	3144	False	NA	NA	False	NA	NA	NA	143239572	143188542	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr7_-_143188592_143219596_143222330_143223718_143223793_143224568_143224681_143233681_143233811_143235196_143235288_143239518
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087724	chr7	-	2642	21	FSM	ENSMUSG00000031090.15	ENSMUST00000033415.15	2641	21	-1	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	7.20416546173115	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTTATTGATGTGTACG	NA	False	NA	NA	False	AATAAA	-25	NA	143376579	143349320	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_143349794_143351561_143351739_143352191_143352321_143352777_143352848_143353527_143353660_143356932_143357040_143357750_143357887_143359651_143359821_143360616_143360720_143361123_143361173_143361721_143361847_143362528_143362604_143364905_143365038_143366226_143366345_143366499_143366589_143367126_143367179_143369322_143369413_143369910_143369965_143372829_143372947_143374908_143374970_143376395
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087731	chr7	+	2399	8	ISM	ENSMUSG00000058454.16	ENSMUST00000124340.8	2556	9	557	-1	-51	1	3prime_fragment	TRUE	canonical	3	394	junction_5	16.39686381163	281	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTTGTACTGTCTCCTG	NA	False	NA	33	True	NA	NA	NA	143383919	143402148	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087740	chr7	+	2535	9	NIC	ENSMUSG00000058454.16	novel	2815	9	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	171.596137412822	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTATGTTGTACTGTCTCC	NA	False	NA	31	True	NA	NA	NA	143383950	143402146	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_143384003_143387504_143387674_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087743	chr7	+	2094	7	NIC	ENSMUSG00000058454.16	novel	2556	9	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	155.689238192268	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	32	True	NA	NA	NA	143383950	143402147	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr7_+_143384003_143390374_143390467_143391498_143391722_143395076_143395109_143396850_143397056_143399177_143399310_143400789
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087754	chr7	+	2328	7	ISM	ENSMUSG00000058454.16	ENSMUST00000141916.8	2752	9	6548	0	-26	0	3prime_fragment	FALSE	canonical	3	394	junction_4	15.8324561160506	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	32	True	NA	NA	NA	143390361	143402147	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087762	chr7	-	3071	18	FSM	ENSMUSG00000031078.16	ENSMUST00000103079.4	3286	18	236	-21	-28	19	multi-exon	TRUE	canonical	0	0	junction_7	258.149054338875	959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTTGGTCTCCATGTTTT	NA	False	NA	1	True	AATAAA	-35	NA	144024510	143989450	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087788	chr7	-	3022	18	NNC	ENSMUSG00000031078.16	novel	3286	18	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	340.414839535204	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTGTGATCTTCTGC	NA	False	NA	-20	True	AATAAA	-14	NA	144024478	143989471	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995431_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087805	chr7	-	1529	2	FSM	ENSMUSG00000031077.8	ENSMUST00000033394.8	3903	2	0	2374	0	-2374	multi-exon	FALSE	canonical	3	26	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGCTGGGTGTGATAA	NA	False	NA	-5	True	AATAAA	-21	NA	144136200	144133428	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_144134598_144135840
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087812	chr7	+	3055	3	FSM	ENSMUSG00000050917.6	ENSMUST00000060336.5	3030	3	-20	-5	-20	5	multi-exon	FALSE	canonical	3	677	junction_2	22.5	1305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTCTGCTTTGTCTTT	7982	False	NA	33	True	ATTAAA	-23	NA	144415102	144418985	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_+_144415570_144415968_144416073_144416501
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087818	chr7	+	2706	4	NNC	ENSMUSG00000050917.6	novel	3030	3	NA	NA	-5	5	at_least_one_novel_splicesite	FALSE	canonical	1	12	junction_3	324.610878163721	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTCTGCTTTGTCTTT	7997	False	NA	33	True	ATTAAA	-23	NA	144415117	144418985	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_144415570_144415968_144416073_144416501_144416652_144416985
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087819	chr7	+	3034	3	NNC	ENSMUSG00000050917.6	novel	3030	3	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	361	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTGTGTCTGCTTTGTC	7997	False	NA	30	True	ATTAAA	-20	NA	144415117	144418982	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_144415570_144415968_144416070_144416501
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087820	chr7	+	2949	4	NNC	ENSMUSG00000050917.6	novel	3030	3	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_3	327.434811154153	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTGTGTCTGCTTTGTC	7997	False	NA	30	True	ATTAAA	-20	NA	144415117	144418982	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_144415570_144415968_144416073_144416501_144416584_144416671
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087821	chr7	+	2612	5	NNC	ENSMUSG00000050917.6	novel	3030	3	NA	NA	-5	5	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_4	345.874977412359	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTCTGCTTTGTCTTT	7997	False	NA	33	True	ATTAAA	-23	NA	144415117	144418985	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_144415570_144415968_144416073_144416501_144416652_144416985_144417108_144417201
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087825	chr7	+	3469	2	ISM	ENSMUSG00000050917.6	ENSMUST00000060336.5	3030	3	-5	-5	-5	5	intron_retention	FALSE	canonical	3	722	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTCTGCTTTGTCTTT	7997	False	NA	33	True	ATTAAA	-23	NA	144415117	144418985	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr7_+_144415570_144415968
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087835	chr7	+	2943	4	NNC	ENSMUSG00000050917.6	novel	3030	3	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	327.905474184253	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTGTGTCTGCTTTGTC	7997	False	NA	30	True	ATTAAA	-20	NA	144415117	144418982	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_+_144415570_144415968_144416073_144416501_144417108_144417201
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087851	chr7	+	3865	1	Genic_Genomic	ENSMUSG00000050917.6	novel	NA	NA	NA	NA	-5	2	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTGTGTCTGCTTTGTC	7997	False	NA	30	True	ATTAAA	-20	NA	144415117	144418982	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr7_+_144415100_144419000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087875	chr7	-	3077	5	NNC	ENSMUSG00000070348.6	novel	3740	5	NA	NA	38	-691	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	163.518347594391	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTTCCTGTTCACAATAC	NA	False	NA	59	True	NA	NA	NA	144493568	144484358	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr7_-_144486575_144487752_144487902_144491030_144491191_144491623_144491840_144493232
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087879	chr7	-	2804	25	FSM	ENSMUSG00000048677.10	ENSMUST00000058022.6	2993	25	54	135	-26	0	multi-exon	FALSE	canonical	3	14	junction_4	4.91860837364933	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACCTCTTTCTACTTC	NA	False	NA	1	True	TATAAA	-18	NA	144837694	144807794	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr7_-_144808436_144809187_144809271_144809616_144809699_144810250_144810334_144810466_144810549_144810908_144810983_144811532_144811605_144812251_144812352_144813825_144813876_144814608_144814738_144815669_144815730_144815884_144816005_144820294_144820382_144820514_144820597_144821039_144821141_144821804_144821870_144822596_144822663_144823470_144823571_144826016_144826093_144827598_144827706_144830845_144830963_144832473_144832652_144833013_144833091_144833965_144834031_144837587
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087885	chr8	+	5301	20	FSM	ENSMUSG00000004568.14	ENSMUST00000004684.13	5271	20	-30	0	2	0	multi-exon	TRUE	canonical	3	218	junction_1	25.5526180280738	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGGCTGAAACAGACCT	NA	False	NA	24	True	AATAAA	-14	NA	3443007	3506601	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382_3498569_3500295_3500437_3500780_3500915_3501490_3501539_3501630_3501679_3501814_3502286_3503037_3503372_3504158_3504285_3504371
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087924	chr8	+	4402	32	NNC	ENSMUSG00000004565.16	novel	4444	35	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_27	53.183756605766	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGTGCTGTCTTTGGGT	NA	False	NA	17	True	AATAAA	-21	NA	3566862	3594267	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588090_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087972	chr8	-	2662	19	NNC	ENSMUSG00000019470.13	novel	2677	19	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	107.002206623145	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCGGTCTTGACCTCCTT	1029	False	NA	-5	True	AATACA	-15	NA	3671298	3660087	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_3660220_3660306_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087985	chr8	+	200	1	Intergenic	novelGene_341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTACAATACCAATATCACAA	1183	False	NA	NA	False	ATTAAA	-14	NA	3667146	3667346	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_3667100_3667300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000087987	chr8	+	343	4	FSM	ENSMUSG00000087687.4	ENSMUST00000156380.4	1193	4	-13	863	-10	0	multi-exon	FALSE	canonical	3	539	junction_1	68.3715340376876	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTAGTGCCAAGTGTT	5574	False	NA	10	True	NA	NA	NA	3671537	3673372	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_3671612_3672341_3672429_3672592_3672626_3673223
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088001	chr8	+	1881	19	FSM	ENSMUSG00000004626.15	ENSMUST00000004745.9	1847	19	-34	0	-16	0	multi-exon	FALSE	canonical	3	69	junction_17	74.555886735479	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4568	False	NA	16	True	AATAAA	-22	NA	3681135	3692795	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691894_3692056_3692645
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088011	chr8	+	1935	19	NIC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	83.3438697042797	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4585	False	NA	16	True	AATAAA	-22	NA	3681152	3692795	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_3681279_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088019	chr8	+	2056	2	FSM	ENSMUSG00000040236.5	ENSMUST00000044857.4	2546	2	156	334	-55	1	multi-exon	FALSE	canonical	3	198	junction_1	0	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGGCTATTATTATTGT	NA	False	NA	15	True	NA	NA	NA	3726454	3730921	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_3726604_3729014
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088039	chr8	+	3414	11	FSM	ENSMUSG00000002948.20	ENSMUST00000110998.9	3497	11	84	-1	-5	0	multi-exon	FALSE	canonical	3	271	junction_7	24.9617707705203	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTGTCCTAAGCCTGG	NA	False	NA	20	True	AATAAA	-21	NA	4288823	4297897	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088069	chr8	-	2491	6	FSM	ENSMUSG00000040028.11	ENSMUST00000098950.6	5743	6	292	2960	-35	1	multi-exon	FALSE	canonical	3	1349	junction_5	146.904594890698	278	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTTTGTTTTTTGTTT	NA	False	NA	0	True	ATTAAA	-22	NA	4375121	4338341	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_4339925_4345335_4345562_4351684_4351839_4354926_4355031_4361598_4361787_4374885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088089	chr8	+	1602	11	FSM	ENSMUSG00000008206.17	ENSMUST00000008350.16	9475	11	250	7623	0	6	multi-exon	FALSE	canonical	3	44	junction_6	6.51459898996093	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTGCGCCAGAGCTTAA	NA	False	NA	17	True	AATAAA	-18	NA	4543448	4574057	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_4543591_4565554_4565729_4566872_4566991_4568239_4568359_4568602_4568661_4569462_4569514_4570215_4570309_4570553_4570683_4571173_4571281_4573353_4573511_4573603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088097	chr8	-	2197	13	FSM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	-39	-2	-26	2	multi-exon	TRUE	canonical	3	204	junction_9	39.0672497112351	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTGAAATGTGGATTTA	NA	False	NA	-3	True	TATAAA	-17	NA	4829593	4785973	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088142	chr8	-	1810	15	FSM	ENSMUSG00000056228.11	ENSMUST00000049461.7	1902	15	52	40	10	4	multi-exon	FALSE	canonical	3	35	junction_9	50.1547096288991	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGTGGGCCTATGCTGC	NA	False	NA	-56	True	ATTAAA	-29	NA	11600731	11564016	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580428_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088157	chr8	+	1946	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209565.2	1971	2	26	-1	26	0	multi-exon	FALSE	canonical	3	111	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTTTATTTCCTTATG	NA	False	NA	16	True	NA	NA	NA	11608454	11613251	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_11608567_11611417
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088165	chr8	-	2450	7	FSM	ENSMUSG00000031508.15	ENSMUST00000211174.2	2447	7	0	-3	0	2	multi-exon	FALSE	canonical	3	27	junction_4	195.638626610959	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTCTGAAACTGCTTT	NA	False	NA	0	True	AATAAA	-17	NA	11685754	11661580	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11673859_11678438_11678531_11682865_11683019_11685410
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088168	chr8	-	2406	7	FSM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	-6	-2	-3	2	multi-exon	FALSE	canonical	3	111	junction_4	160.305350988529	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTCTGAAACTGCTTT	NA	False	NA	0	True	AATAAA	-17	NA	11685760	11661580	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11685410
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088214	chr8	+	4469	20	FSM	ENSMUSG00000031511.17	ENSMUST00000074856.13	4451	20	-18	0	-18	0	multi-exon	FALSE	canonical	3	61	junction_7	14.3717944757881	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTTGCTTCATCTTCCTT	9610	False	NA	17	True	ATTAAA	-27	NA	11808335	11885219	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11855200_11855324_11858715_11858855_11859516_11859577_11860250_11860398_11862596_11862684_11864942_11865022_11865160_11865301_11867659_11867885_11869637_11869732_11871959_11872050_11881492_11881593_11881894_11881950_11882969
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088225	chr8	-	3690	22	FSM	ENSMUSG00000000759.15	ENSMUST00000000776.15	3797	22	107	0	-18	0	multi-exon	TRUE	canonical	3	142	junction_11	12.9206544206397	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATGTGGTTTCTGAA	NA	False	NA	1	True	ATTAAA	-18	NA	12722141	12664276	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088243	chr8	+	205	1	Intergenic	novelGene_342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCAGTCAGTGCTCTT	1039	False	NA	NA	False	NA	NA	NA	13201997	13202202	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_13202000_13202200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088268	chr8	-	2739	7	FSM	ENSMUSG00000038506.14	ENSMUST00000045366.10	2748	7	8	1	0	0	multi-exon	FALSE	canonical	3	25	junction_2	9.7082439194738	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGTGATGTCCTTTATT	NA	False	NA	-4	True	AATAAA	-13	NA	13337833	13305964	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_13307977_13308946_13309044_13311384_13311468_13321589_13321721_13328516_13328686_13330908_13331126_13337803
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088293	chr8	+	2599	12	NIC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	464	junction_1	173.205128471779	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	2129	False	NA	94	True	AATAAA	-24	NA	13388776	13428448	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_13388921_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088315	chr8	-	2599	15	FSM	ENSMUSG00000031451.7	ENSMUST00000033828.7	2548	15	-51	0	-51	0	multi-exon	FALSE	canonical	3	43	junction_8	9.27719389312373	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTTGGTCACTGTCT	5709	False	NA	1	True	AATAAA	-23	NA	13544541	13515373	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_13515901_13516626_13516856_13518191_13518365_13520218_13520388_13521448_13521614_13524656_13524847_13525038_13525158_13526111_13526234_13527043_13527167_13528251_13528375_13529006_13529130_13533673_13533737_13535670_13535696_13543845_13544013_13544260
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088349	chr8	-	1144	4	NNC	ENSMUSG00000031458.9	novel	793	4	NA	NA	-14	324	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	294.415050943769	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGTACACTGTTGCTGT	NA	False	NA	NA	False	TTTAAA	-25	NA	13940295	13934469	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_13935202_13935665_13935878_13937755_13937827_13940166
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088376	chr8	-	2433	3	NNC	ENSMUSG00000050052.13	novel	2463	3	NA	NA	20	0	intron_retention	TRUE	canonical	3	30	junction_2	133	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	4834	False	NA	-4	True	ATTAAA	-18	NA	14024723	14002007	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_14004136_14005719_14005818_14024516
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088389	chr8	-	1589	6	FSM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	-28	-4	-28	4	multi-exon	FALSE	canonical	3	204	junction_5	39.1591624016653	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTGTGATAAGATTATAA	NA	False	NA	-2	True	AATAAA	-22	NA	14140329	14077556	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140240
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088397	chr8	+	2466	4	NIC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-151	2880	combination_of_known_junctions	FALSE	canonical	3	37	junction_2	81.7897032367495	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGGTATGATGCCTAT	NA	False	NA	10	True	TATAAA	-18	NA	14938852	14947939	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_14939119_14940491_14940624_14944571_14945231_14946530
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088398	chr8	+	2335	3	FSM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	742	3780	-151	2881	multi-exon	FALSE	canonical	3	162	junction_1	24.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAGGTATGATGCCTATT	NA	False	NA	11	True	TATAAA	-19	NA	14938852	14947940	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_14939119_14944571_14945231_14946530
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088451	chr8	+	1122	4	Fusion	ENSMUSG00000110669.2_ENSMUSG00000071793.13	novel	948	5	NA	NA	-25	335	multi-exon	FALSE	canonical	3	77	junction_3	482.157881012249	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCATTCAACGTTAGGGC	NA	False	NA	NA	False	AATAAA	-15	NA	19834736	20046223	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036156_20045732
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088461	chr8	+	2874	5	Fusion	ENSMUSG00000110669.2_ENSMUSG00000071793.13	novel	948	5	NA	NA	-20	-2120	multi-exon	FALSE	canonical	3	606	junction_2	335.627770007191	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAAGGAAGTCAGTTAAG	NA	False	NA	NA	False	AATAAA	-1	NA	19834741	20043768	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr8_+_19834867_20030550_20030924_20035860_20036160_20039783_20039904_20041811
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088485	chr8	+	2951	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	21	11730	21	-2120	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAAGGAAGTCAGTTAAG	NA	False	NA	NA	False	AATAAA	-1	NA	20016486	20043768	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088491	chr8	+	4363	1	NIC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	21	-25039	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTAATAGTTGAGCATCT	NA	False	NA	NA	False	NA	NA	NA	20016486	20020849	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_20016500_20020800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088499	chr8	+	203	1	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	37597	1233	23348	-1233	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATCGCTGAAGAGTGACA	NA	False	NA	NA	False	AATAGA	-33	NA	20054062	20054265	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr8_+_20054100_20054300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088503	chr8	+	2928	1	Intergenic	novelGene_343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTAAAACTTTACCTGCT	NA	False	NA	NA	False	NA	NA	NA	20119986	20122914	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_20120000_20122900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088519	chr8	+	204	1	Intergenic	novelGene_344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATCGCTGAAGAGTGACA	NA	False	NA	NA	False	AATAGA	-33	NA	21130919	21131123	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_21130900_21131100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088530	chr8	-	2037	16	FSM	ENSMUSG00000031478.17	ENSMUST00000033865.16	2021	16	-16	0	7	0	multi-exon	FALSE	canonical	3	19	junction_15	6.34350061086148	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTGTGCTGGTTTTCAA	NA	False	NA	2	True	AATACA	-17	NA	22656444	22618298	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_22618807_22619360_22619485_22621221_22621354_22622065_22622210_22623008_22623112_22632905_22632956_22636946_22637020_22638498_22638700_22639876_22639932_22646991_22647079_22647165_22647234_22648642_22648727_22650207_22650306_22650385_22650474_22652339_22652511_22656393
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088541	chr8	-	2302	9	FSM	ENSMUSG00000037725.9	ENSMUST00000046916.9	2593	9	2	289	2	-4	multi-exon	FALSE	canonical	3	249	junction_6	17.1973835219198	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATTTCATTGATTGACT	NA	False	NA	-5	True	AATAAA	-22	NA	22675833	22658464	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088554	chr8	-	3436	7	FSM	ENSMUSG00000031482.10	ENSMUST00000033871.8	3430	7	-5	-1	-5	1	multi-exon	FALSE	canonical	3	211	junction_4	26.1002341411379	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCTGGTCGTAGTGTC	NA	False	NA	-5	True	NA	NA	NA	22888618	22865565	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879829_22880089_22885728_22885844_22888455
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088569	chr8	+	3664	11	FSM	ENSMUSG00000037656.10	ENSMUST00000067786.9	3566	11	-94	-4	-94	4	multi-exon	FALSE	canonical	3	459	junction_6	45.0493063209635	722	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGACGTCTTTTTCTTT	NA	False	NA	19	True	AATAAA	-24	NA	22966709	23059632	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_22966942_23025034_23025589_23028819_23028961_23030375_23030462_23035519_23035617_23048957_23049075_23050512_23050717_23050902_23051495_23054044_23054231_23055629_23055715_23058262
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088597	chr8	-	1433	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	-67	-12	-12	1	multi-exon	FALSE	canonical	3	2053	junction_8	117.712573669936	602	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTAGTAGTGGTTGGTT	NA	False	NA	1	True	AATAAA	-34	NA	23083841	23067089	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088610	chr8	-	3565	22	FSM	ENSMUSG00000031537.16	ENSMUST00000033939.13	3580	22	15	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	18.670796433355	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGAGTCATGTCATTGA	NA	False	NA	0	True	NA	NA	NA	23196579	23149227	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_23150476_23151417_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159747_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088655	chr8	-	1958	5	FSM	ENSMUSG00000015341.18	ENSMUST00000121783.7	1945	5	-6	-7	-6	0	multi-exon	TRUE	canonical	3	1223	junction_2	41.2946727799119	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTCTTGTCTTAGTCTA	NA	False	NA	-19	True	AATAAA	-1	NA	23747043	23731361	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088695	chr8	+	4107	18	NNC	ENSMUSG00000031565.19	novel	5025	18	NA	NA	-5	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	63.8572694769507	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGGGCGTGTGAAAAGAG	NA	False	NA	21	True	AATAAA	-24	NA	26008769	26064807	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047837_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056934_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088708	chr8	+	3933	18	NNC	ENSMUSG00000031565.19	novel	4046	18	NA	NA	3	86	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	81.4993578423764	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAATGTTTTTTAAAAGG	NA	False	NA	NA	False	NA	NA	NA	26008807	26064679	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047831_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056934_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062804_26063138_26063277_26063561_26063668_26063760
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088729	chr8	-	4810	5	FSM	ENSMUSG00000037316.10	ENSMUST00000038498.10	4876	5	66	0	-23	0	multi-exon	FALSE	canonical	3	378	junction_2	10.356157588604	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGTTTTCTCTCTAGCA	NA	False	NA	NA	False	AATAAA	-25	NA	26275249	26254565	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_26258438_26259309_26259565_26261106_26261362_26267450_26267556_26274926
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088739	chr8	-	3242	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	-25	-880	-25	0	multi-exon	TRUE	canonical	3	3119	junction_12	186.058007680998	1551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCAATGTTTGAATGAC	NA	False	NA	NA	False	NA	NA	NA	26337747	26306023	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088745	chr8	-	2433	16	FSM	ENSMUSG00000031575.19	ENSMUST00000068892.15	3307	16	0	874	0	0	multi-exon	FALSE	canonical	3	230	junction_15	813.355748325008	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTTCACTGGAAGTGA	NA	False	NA	-6	True	AATAAA	-25	NA	26330815	26306897	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330609
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088789	chr8	-	2435	18	NNC	ENSMUSG00000037260.9	novel	2694	18	NA	NA	73	-190	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_15	31.1427120224095	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCATGTTGTCTGATTT	NA	False	NA	-26	True	TATAAA	-16	NA	26466708	26434670	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_26435344_26436263_26436377_26436474_26436546_26437961_26438040_26441996_26442084_26443308_26443436_26444633_26444756_26445701_26445818_26447217_26447379_26449610_26449642_26450853_26450931_26453382_26453487_26454821_26454892_26458390_26458461_26461074_26461197_26461589_26461731_26462869_26462986_26466552
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088834	chr8	+	2039	8	FSM	ENSMUSG00000031485.16	ENSMUST00000033875.10	3603	8	0	1564	0	1	multi-exon	FALSE	canonical	3	235	junction_4	11.5881713089561	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTGATGAGTGAATT	NA	False	NA	14	True	ATTAAA	-16	NA	27532582	27544596	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088842	chr8	+	2565	9	NNC	ENSMUSG00000031485.16	novel	3603	8	NA	NA	10	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	86.0112637972493	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCGTGTGGGTGTTTTTCTC	NA	False	NA	30	True	AATAAA	-22	NA	27532598	27546165	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313_27544055_27545081
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088877	chr8	-	2449	5	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	-9466	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	47.5887329102173	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27730318	27715803	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_27716411_27716753_27716822_27717284_27718779_27719136_27719313_27730214
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088899	chr8	+	2191	7	FSM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	-19	961	-19	-961	multi-exon	FALSE	canonical	3	124	junction_5	19.2476549798208	381	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTCTTCTATTTGTCCAC	NA	False	NA	10	True	ATTAAA	-21	NA	31640323	31650121	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805_31645950_31648620_31648784_31649909
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088917	chr8	-	1907	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	-5	0	-5	0	multi-exon	FALSE	canonical	3	742	junction_2	38.8285245790727	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	False	NA	-2	True	TATAAA	-20	NA	31658797	31649490	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088923	chr8	+	2951	4	FSM	ENSMUSG00000046152.17	ENSMUST00000161788.8	2962	4	11	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	13.29995822884	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCACTGTCGCAGACTCTC	NA	False	NA	6	True	AATAAA	-16	NA	31677370	31727822	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31725622
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088933	chr8	+	359	1	Intergenic	novelGene_345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATCACTTACGTTCTAGG	NA	False	NA	NA	False	NA	NA	NA	34035588	34035947	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_34035600_34035900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088935	chr8	-	1654	8	FSM	ENSMUSG00000052906.8	ENSMUST00000095349.6	2808	8	-13	1167	-13	-1167	multi-exon	FALSE	canonical	3	227	junction_7	19.9335631229219	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTCTTAAGGTATCTTT	4657	False	NA	0	True	NA	NA	NA	34132008	34110780	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_34111729_34113189_34113265_34116351_34116394_34119264_34119403_34123529_34123656_34125316_34125388_34128507_34128631_34131877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088970	chr8	-	2481	8	FSM	ENSMUSG00000031586.18	ENSMUST00000053251.12	2466	8	-13	-2	-13	2	multi-exon	FALSE	canonical	3	696	junction_1	308.820996959833	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGTCTGACAACTTAC	NA	False	NA	NA	False	AATAAA	-21	NA	34419904	34272668	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_34274215_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000088989	chr8	-	944	7	FSM	ENSMUSG00000031516.12	ENSMUST00000033913.11	1249	7	308	-3	-11	0	multi-exon	FALSE	canonical	3	293	junction_6	39.9485780584101	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGCCTCAATTTCCATT	NA	False	NA	0	True	AATAAA	-31	NA	34575642	34557573	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_34557997_34559664_34559808_34560782_34560831_34562037_34562127_34564342_34564449_34573495_34573561_34575572
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089001	chr8	+	1883	6	FSM	ENSMUSG00000031532.8	ENSMUST00000239436.2	1897	6	16	-2	3	2	multi-exon	FALSE	canonical	3	207	junction_1	37.2633868562695	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTGTTTCGTGTGTGGTTT	NA	False	NA	35	True	AATAAA	-42	NA	34621732	34638001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635012_34635610_34635766_34637249
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089021	chr8	-	4015	7	FSM	ENSMUSG00000031527.8	ENSMUST00000033927.8	5079	7	-8	1072	-8	-1072	multi-exon	FALSE	canonical	3	346	junction_2	28.274939827031	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTTTCTCTCCACTTC	NA	False	NA	2	True	ATTAAA	-22	NA	35962695	35933478	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_35936525_35941550_35941666_35943612_35943723_35945713_35945798_35949669_35949881_35958354_35958534_35962425
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089050	chr8	-	2600	7	FSM	ENSMUSG00000031601.17	ENSMUST00000034012.10	2615	7	14	1	14	-1	multi-exon	FALSE	canonical	3	422	junction_2	67.4388612003495	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTTGTGACTGATGGCT	NA	False	NA	-2	True	AATAAA	-22	NA	40964781	40945581	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089085	chr8	+	1942	11	ISM	ENSMUSG00000031592.11	ENSMUST00000211247.2	6484	39	-27	56992	-1	6	5prime_fragment	FALSE	canonical	3	93	junction_5	27.2956040416767	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAAGAAACTGAAGAGTC	NA	False	NA	NA	False	AATACA	-4	NA	41692787	41728137	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41714396_41714514_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089098	chr8	-	2189	14	NIC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	-15	-1	combination_of_known_junctions	FALSE	canonical	3	76	junction_13	375.853820885935	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGCAGTCATGCATGCT	7624	False	NA	-22	True	AATAAA	-17	NA	41827687	41793698	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827542
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089107	chr8	-	199	1	Genic_Genomic	ENSMUSG00000031590.9	novel	NA	NA	NA	NA	-24	-5663	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGCGGCGCTCGGGAGG	NA	False	NA	-1	True	ACTAAA	-9	NA	41870135	41869936	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr8_-_41869900_41870100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089153	chr8	-	1826	4	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	3	109	junction_1	1739.84271319757	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43760071	43748099	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_43749570_43753664_43753743_43757512_43757597_43759877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089156	chr8	-	1965	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	2131.08874756543	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43760071	43748099	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758460_43758596_43759877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089166	chr8	-	1903	5	FSM	ENSMUSG00000051176.7	ENSMUST00000211248.2	1837	5	-66	0	-22	0	multi-exon	FALSE	canonical	3	65	junction_3	1844.21519555067	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43760039	43748099	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_43749574_43753664_43753743_43755911_43756017_43757512_43757597_43759877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089184	chr8	-	1901	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-22	-2	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	1854.01313034725	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAATGAGTTCAATTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	43760039	43748105	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_43749574_43753664_43753743_43755911_43756021_43757512_43757597_43759877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089230	chr8	+	3001	21	FSM	ENSMUSG00000018796.14	ENSMUST00000110372.9	3429	21	9	419	1	-419	multi-exon	FALSE	canonical	3	16	junction_1	90.7041344151412	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCGGCTCACTCAAACGTT	9516	False	NA	NA	False	AAGAAA	-8	NA	46944011	46988199	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_46944199_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089270	chr8	-	4355	30	FSM	ENSMUSG00000038102.16	ENSMUST00000039061.15	4332	30	-23	0	-20	0	multi-exon	TRUE	canonical	3	87	junction_18	20.4181612288351	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTTGGTTTTCTTTTAT	4031	False	NA	3	True	AATAAA	-29	NA	47986525	47943149	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966464_47966788_47966844_47966915_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47972606_47972741_47975385_47975483_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089290	chr8	-	2613	3	FSM	ENSMUSG00000038069.7	ENSMUST00000212175.2	3393	3	-1	781	0	-781	multi-exon	FALSE	canonical	3	65	junction_1	31	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTGTGTTTTTTTTTCT	NA	False	NA	-1	True	ATTAAA	-27	NA	48166967	48163260	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_48165330_48165922_48166054_48166554
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089292	chr8	-	2582	3	FSM	ENSMUSG00000038069.7	ENSMUST00000038738.7	3464	3	0	882	0	-781	multi-exon	FALSE	canonical	3	60	junction_1	33.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTGTGTTTTTTTTTCT	NA	False	NA	-1	True	ATTAAA	-27	NA	48166967	48163260	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_48165330_48165953_48166054_48166554
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089310	chr8	+	2098	6	FSM	ENSMUSG00000031562.17	ENSMUST00000170263.10	2096	6	0	-2	0	2	multi-exon	TRUE	canonical	3	319	junction_1	42.4480859403578	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTTTGCTTTTATATTTA	NA	False	NA	12	True	ATTAAA	-18	NA	48562992	48594702	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089327	chr8	+	2257	2	ISM	ENSMUSG00000110013.2	ENSMUST00000210977.2	763	4	0	42639	0	-42639	5prime_fragment	FALSE	canonical	3	54	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGTTTCTCGTGAGTGAT	NA	False	NA	23	True	NA	NA	NA	52809645	52813735	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr8_+_52809842_52811674
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089346	chr8	+	2198	7	FSM	ENSMUSG00000031520.7	ENSMUST00000033919.6	2449	7	-394	645	-394	-645	multi-exon	FALSE	canonical	3	36	junction_4	8.69386757049665	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATGAAGTTCAGTCTTTT	627	False	NA	NA	False	AATAAA	-19	NA	54530246	54639486	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_54530961_54609992_54610195_54612327_54612519_54622059_54622212_54633736_54633844_54634121_54634456_54638988
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089349	chr8	+	1684	7	FSM	ENSMUSG00000031613.10	ENSMUST00000034026.10	1683	7	0	-1	0	1	multi-exon	FALSE	canonical	3	14	junction_2	3.18416219575713	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAAATTGCCTATTCCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	56747619	56774079	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_56747748_56747973_56748098_56751390_56751498_56760628_56760726_56770784_56770862_56772027_56772192_56773092
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089361	chr8	+	1902	6	FSM	ENSMUSG00000038206.14	ENSMUST00000040218.13	3571	6	19	1650	0	-104	multi-exon	TRUE	canonical	3	53	junction_4	8.56504524214554	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTGAGAATATAAAAATGT	NA	False	NA	8	True	AATAAA	-21	NA	57004143	57045324	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_57004412_57017592_57017930_57022318_57022446_57041041_57041161_57043092_57043290_57044470
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089384	chr8	+	1194	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	-69	1503	-69	1287	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	1719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTGTATTAATTTTTC	NA	False	NA	11	True	AATAAA	-22	NA	57964871	57967530	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089386	chr8	+	1190	5	NNC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	-69	1287	at_least_one_novel_splicesite	FALSE	canonical	3	1278	junction_1	2424.68941310016	429	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTGTATTAATTTTTC	NA	False	NA	11	True	AATAAA	-22	NA	57964871	57967530	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_57965040_57965612_57965783_57966095_57966242_57966323_57966499_57966999
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089415	chr8	+	205	1	Intergenic	novelGene_346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGCGAATCGATCCATAC	7157	False	NA	NA	False	NA	NA	NA	61137694	61137899	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_61137700_61137900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089460	chr8	-	2461	12	FSM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	-62	1794	-62	1698	multi-exon	FALSE	canonical	3	58	junction_8	23.5231554638234	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAAAATCATATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	62044238	61966260	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387_61986610_61988719_61988819_61991721_61991858_62002604_62003280_62044093
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089468	chr8	-	2118	9	FSM	ENSMUSG00000037852.9	ENSMUST00000048967.9	2117	9	-1	0	-1	0	multi-exon	FALSE	canonical	3	35	junction_4	3.34477204006491	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATGGTGTGCATTTCTC	NA	False	NA	NA	False	AATAAA	-20	NA	65146089	65045575	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_65046256_65047930_65048050_65050493_65050594_65059636_65059777_65062081_65062265_65064407_65064526_65070571_65070740_65072384_65072582_65145676
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089477	chr8	-	1830	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	214	0	0	0	multi-exon	TRUE	canonical	3	690	junction_2	21.3822356174466	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	-17	True	AATAAA	-1	NA	65186612	65171172	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089485	chr8	+	205	1	Intergenic	novelGene_347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAAACCACACCCAATGTG	NA	False	NA	NA	False	NA	NA	NA	65208482	65208687	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_65208500_65208700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089487	chr8	+	1125	6	FSM	ENSMUSG00000025521.16	ENSMUST00000026595.13	1122	6	0	-3	0	3	multi-exon	FALSE	canonical	3	529	junction_4	36.201657420621	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTATGTTGTGAATA	NA	False	NA	28	True	TATAAA	-20	NA	65399836	65421688	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_65399986_65409037_65409185_65411996_65412262_65416849_65416985_65418190_65418294_65421362
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089504	chr8	-	2507	6	NIC	ENSMUSG00000025591.7	novel	3150	7	NA	NA	0	-2125	intron_retention	FALSE	canonical	3	740	junction_4	84.295670114188	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCTGTATGTAAGAATTT	NA	False	NA	-15	True	AATAAA	-15	NA	66939173	66929106	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66936823_66939063
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089511	chr8	+	2714	10	NNC	ENSMUSG00000053886.5	novel	2718	9	NA	NA	153	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	15.2372188901444	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGGTCATGGTG	NA	False	NA	22	True	NA	NA	NA	68729371	68800351	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_68729525_68734684_68735064_68746954_68747112_68747507_68747652_68749305_68749478_68781903_68782013_68783686_68783889_68787716_68787848_68798604_68798826_68799305
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089525	chr8	+	2426	17	NNC	ENSMUSG00000031864.17	novel	4201	17	NA	NA	3	160	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	173.689906424495	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTTTTAGTTTCAAGTA	NA	False	NA	30	True	AATAAA	-32	NA	69246610	69280313	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260288_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089543	chr8	+	2506	10	FSM	ENSMUSG00000015568.17	ENSMUST00000015712.15	4115	10	64	1545	0	-1545	multi-exon	TRUE	canonical	3	87	junction_5	14.4871164560059	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGGAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	69333206	69358041	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_69333493_69340094_69340256_69345246_69345427_69347278_69347391_69348313_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089548	chr8	+	2832	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	0	-7	0	7	multi-exon	TRUE	canonical	3	1214	junction_12	88.1479391228044	802	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTCTGTGTTTTCTCTCG	NA	False	NA	25	True	AATAAA	-29	NA	69541297	69566370	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089565	chr8	-	2468	5	FSM	ENSMUSG00000060427.16	ENSMUST00000121886.8	2259	5	-6	-203	-6	203	multi-exon	FALSE	canonical	3	55	junction_4	33.7083075813663	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTGCCTCCCATACTTT	NA	False	NA	-25	True	NA	NA	NA	70078205	70063304	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70078085
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089574	chr8	-	3187	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238418.2	3180	5	-7	0	-7	0	multi-exon	FALSE	canonical	3	68	junction_4	9.33742469849155	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGTCAATGTATTTT	NA	False	NA	0	True	NA	NA	NA	70169559	70157786	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70169417
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089579	chr8	+	3848	26	FSM	ENSMUSG00000031862.12	ENSMUST00000034326.7	3915	26	67	0	-20	0	multi-exon	TRUE	canonical	3	203	junction_10	47.3625337160081	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGCTGCCACTTATATCT	9231	False	NA	NA	False	AATAAA	-23	NA	70243879	70260399	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_70244292_70246398_70246489_70246579_70246771_70249228_70249302_70249479_70249636_70249731_70249802_70249874_70249982_70250356_70250487_70250590_70250647_70251036_70251164_70251233_70251372_70251461_70251583_70251970_70252129_70252411_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089682	chr8	+	1951	14	NNC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	0	-392	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	139.368058109819	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCATTCCAGTTCCT	2378	False	NA	11	True	ATTAAA	-16	NA	70495683	70524605	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517603_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089739	chr8	-	2252	8	FSM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	11	0	-6	0	multi-exon	FALSE	canonical	3	72	junction_3	11.6741472616082	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTCATTTTTCTCACCT	4679	False	NA	0	True	TTTAAA	-1	NA	70687105	70672821	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089767	chr8	+	2463	10	FSM	ENSMUSG00000003573.16	ENSMUST00000110124.9	2445	10	-22	4	-22	-4	multi-exon	FALSE	canonical	3	142	junction_9	38.9171326009065	252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGATCTGGCTCCCTGAG	NA	False	NA	NA	False	AATAAA	-21	NA	70735626	70747007	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744166_70744254_70745624
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089832	chr8	-	4618	24	NNC	ENSMUSG00000058301.9	novel	4518	24	NA	NA	-32	1	at_least_one_novel_splicesite	TRUE	canonical	3	18	junction_1	116.17656531729	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGCTTTTGCGTGGGGC	NA	False	NA	-28	True	AATAAA	-15	NA	70805960	70784173	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_70785126_70785265_70785393_70785622_70785841_70785920_70786083_70786542_70786625_70786722_70786898_70787267_70787411_70787882_70788040_70788303_70788422_70789666_70789881_70790138_70790283_70790855_70790971_70791046_70791212_70791535_70791655_70791729_70791890_70791973_70792083_70792392_70792492_70792664_70792750_70793199_70793362_70794109_70794291_70794659_70794828_70795984_70796075_70796875_70797016_70805427
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089845	chr8	-	3036	3	FSM	ENSMUSG00000055707.14	ENSMUST00000066597.13	2991	3	-48	3	-3	-3	multi-exon	FALSE	canonical	3	54	junction_2	2	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGATGGAGCAGACCTGT	NA	False	NA	-21	True	AATAAA	-13	NA	70929603	70902920	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_70905670_70908115_70908299_70929499
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089859	chr8	-	632	4	FSM	ENSMUSG00000058833.12	ENSMUST00000133683.8	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	338.518340222013	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959076	70956944	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70958941
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089883	chr8	-	717	4	FSM	ENSMUSG00000090137.9	ENSMUST00000129909.8	705	4	-12	0	12	0	multi-exon	FALSE	canonical	0	0	junction_3	10633.6606532694	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	False	NA	-4	True	AATAAA	-28	NA	70963017	70960912	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70962767
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089885	chr8	-	686	4	FSM	ENSMUSG00000090137.9	ENSMUST00000140679.8	697	4	11	0	11	0	multi-exon	FALSE	canonical	0	0	junction_3	10633.6606532694	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	False	NA	-4	True	AATAAA	-28	NA	70962989	70960912	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_70961179_70961945_70962033_70962170_70962282_70962767
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089916	chr8	+	1963	8	NNC	ENSMUSG00000019428.17	novel	1698	9	NA	NA	-6	1	intron_retention	FALSE	canonical	0	0	junction_1	458.365107123755	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTCTAGGCCTCTTTCT	NA	False	NA	28	True	AATAAA	-20	NA	70980390	70987979	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_70980491_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089918	chr8	+	2544	8	NNC	ENSMUSG00000019428.17	novel	1720	9	NA	NA	-6	0	intron_retention	FALSE	canonical	0	0	junction_1	479.613790205309	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTCTAGGCCTCTTTC	NA	False	NA	27	True	AATAAA	-19	NA	70980390	70987978	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_70980491_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70985400_70986766_70986845_70987132_70987265_70987516
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089920	chr8	+	1710	9	NNC	ENSMUSG00000019428.17	novel	1720	9	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	448.998590615828	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTCTAGGCCTCTTTC	NA	False	NA	27	True	AATAAA	-19	NA	70980390	70987978	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_70980491_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000089938	chr8	+	1868	9	FSM	ENSMUSG00000019428.17	ENSMUST00000119698.8	1799	9	-68	-1	16	0	multi-exon	FALSE	canonical	3	550	junction_1	286.852068800279	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTCTAGGCCTCTTTC	NA	False	NA	27	True	AATAAA	-19	NA	70980427	70987978	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090012	chr8	-	1810	15	NIC	ENSMUSG00000070003.8	novel	1475	17	NA	NA	-9	0	intron_retention	TRUE	canonical	3	751	junction_2	216.342981661726	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGGTACTGCTGATG	NA	False	NA	-13	True	AATAAA	-14	NA	71060973	71050142	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_-_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090057	chr8	+	774	5	NIC	ENSMUSG00000031848.16	novel	925	5	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	230	junction_3	1354.46250870964	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCAGCTGTTCTTCTGCC	NA	False	NA	18	True	AATAAA	-18	NA	71126028	71131400	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_71126108_71129204_71129247_71130427_71130509_71130603_71130785_71131009
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090077	chr8	+	1685	1	FSM	ENSMUSG00000071076.9	ENSMUST00000095267.8	1667	1	-17	-1	-17	1	mono-exon	FALSE	NA	NA	NA	NA	NA	346	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCTGTCCGCCTCCTTC	NA	False	NA	35	True	AGTAAA	-17	NA	71151581	71153266	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_71151600_71153300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090083	chr8	+	1346	5	FSM	ENSMUSG00000031840.15	ENSMUST00000034301.12	1363	5	-10	27	-2	-27	multi-exon	FALSE	canonical	3	41	junction_1	7.43303437365925	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCTGGCCCAGCCCCTG	NA	False	NA	19	True	AATAAA	-19	NA	71207349	71211254	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_71207513_71208502_71208731_71209093_71209213_71209783_71209909_71210543
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090089	chr8	-	1096	5	NNC	ENSMUSG00000035559.10	novel	980	5	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	304.272082189609	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGCGTGTGGGTGGGTT	NA	False	NA	-2	True	ATTAAA	-17	NA	71213581	71211294	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_71211671_71211754_71211884_71212036_71212241_71213013_71213185_71213365
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090116	chr8	-	3170	16	FSM	ENSMUSG00000031834.16	ENSMUST00000034296.15	3165	16	-4	-1	-4	1	multi-exon	TRUE	canonical	3	127	junction_15	21.8259784049498	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTCTTTGGGGACTGGA	NA	False	NA	-7	True	NA	NA	NA	71229361	71220818	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_71221542_71221705_71221877_71221991_71222064_71222232_71222410_71222548_71222692_71223020_71223147_71223227_71223409_71223490_71223590_71223697_71223807_71223932_71224019_71224476_71224676_71224776_71224909_71224995_71225047_71225246_71225340_71227299_71227997_71229250
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090142	chr8	-	923	5	FSM	ENSMUSG00000007721.7	ENSMUST00000007865.7	1356	5	439	-6	-113	6	multi-exon	FALSE	canonical	3	353	junction_4	97.9030132324843	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTATGTGTGGTGGGT	NA	False	NA	1	True	AATAAA	-24	NA	71326140	71320864	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_71321290_71321380_71321496_71321576_71321752_71322548_71322719_71326102
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090149	chr8	-	812	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212019.2	795	4	-17	0	-3	0	multi-exon	FALSE	canonical	3	16397	junction_3	7846.8208565989	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350059	71348022	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_71348152_71348243_71348690_71348776_71348957_71350002
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090209	chr8	+	762	6	NNC	ENSMUSG00000002395.15	novel	1000	8	NA	NA	-52	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	409.8313799601	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACATGTCTTCAGTGCTA	NA	False	NA	21	True	AATAAA	-22	NA	71820232	71822375	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_71820338_71820413_71820493_71820602_71820773_71821493_71821522_71821772_71821948_71822170
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090214	chr8	+	1291	5	NIC	ENSMUSG00000002395.15	novel	1000	8	NA	NA	-47	-1	intron_retention	FALSE	canonical	3	844	junction_2	28.3240180765371	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACATGTCTTCAGTGCTA	NA	False	NA	21	True	AATAAA	-22	NA	71820237	71822375	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_71820338_71820413_71820493_71820602_71820756_71821193_71821948_71822170
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090226	chr8	-	2243	4	FSM	ENSMUSG00000002393.15	ENSMUST00000002466.9	2218	4	-16	-9	-16	5	multi-exon	FALSE	canonical	3	125	junction_2	9.56846672960488	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGCTTTCTTCTGCAG	NA	False	NA	1	True	AATAAA	-21	NA	71834620	71826761	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_71827399_71828392_71828918_71831032_71831128_71833634
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090236	chr8	+	1375	10	NNC	ENSMUSG00000031820.10	novel	1433	9	NA	NA	0	7673	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	110.211917080988	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGATTACAAGTAGCTTT	NA	False	NA	NA	False	AAGAAA	-28	NA	71849504	71864936	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_71849665_71850322_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838_71857182_71864912
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090243	chr8	+	1357	9	NNC	ENSMUSG00000031820.10	novel	1433	9	NA	NA	3	-69	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	103.031472740129	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGTGTCACTTTGGGC	NA	False	NA	20	True	AATAAA	-22	NA	71849507	71857194	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_71849665_71850326_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090260	chr8	-	1994	5	FSM	ENSMUSG00000007950.10	ENSMUST00000008094.10	1978	5	-13	-3	-13	3	multi-exon	FALSE	canonical	3	51	junction_3	6.41774882649672	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCAATTTGTGATTCTC	NA	False	NA	-3	True	NA	NA	NA	71916312	71909345	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_71910022_71910681_71910899_71911021_71911193_71913889_71914617_71916109
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090264	chr8	+	656	2	FSM	ENSMUSG00000034880.8	ENSMUST00000048914.8	607	2	-43	-6	-43	6	multi-exon	FALSE	canonical	3	904	junction_1	0	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTATGTATTAACTTACAGT	8877	False	NA	24	True	AATAAA	-24	NA	71917559	71918397	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_71917712_71917893
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090270	chr8	+	1947	5	FSM	ENSMUSG00000074247.11	ENSMUST00000124745.8	1933	5	-13	-1	-13	1	multi-exon	FALSE	canonical	2	515	junction_4	131.476946648452	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTGTGTATTTTTCTGT	NA	False	NA	14	True	NA	NA	NA	71921829	71928743	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71926418_71926481_71927131
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090284	chr8	+	2076	9	FSM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	602	122	-16	-122	multi-exon	FALSE	canonical	0	0	junction_4	23.9892554073694	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTAGTAGCATGTGGT	NA	False	NA	17	True	ATTAAA	-19	NA	71941348	71945922	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720_71945000_71945182
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090291	chr8	+	1987	8	FSM	ENSMUSG00000007610.16	ENSMUST00000095259.10	2109	8	0	122	0	-122	multi-exon	TRUE	canonical	0	0	junction_4	25.5774135055258	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTAGTAGCATGTGGT	NA	False	NA	17	True	ATTAAA	-19	NA	71941364	71945922	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943709_71943854_71944068_71944235_71944720_71945000_71945182
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090338	chr8	+	949	5	FSM	ENSMUSG00000031807.11	ENSMUST00000034264.11	893	5	-53	-3	-53	3	multi-exon	FALSE	canonical	3	546	junction_2	58.7132864009502	763	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTCTGTGGTTCTTGTT	NA	False	NA	18	True	ATTAAA	-18	NA	72044766	72048916	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_72045149_72046727_72046836_72047312_72047415_72047704_72047846_72048700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090355	chr8	+	3077	12	FSM	ENSMUSG00000034807.10	ENSMUST00000047903.10	3207	12	131	-1	-42	1	multi-exon	FALSE	canonical	3	748	junction_9	75.1827525499814	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGGGTTTGGTGCCCCA	NA	False	NA	31	True	ATTAAA	-23	NA	72063772	72077556	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_72064089_72064727_72064839_72065553_72065672_72070193_72070329_72070718_72070924_72072295_72072416_72073244_72073322_72073391_72073499_72074407_72074541_72075346_72075475_72075733_72075941_72076136
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090359	chr8	+	3867	11	NIC	ENSMUSG00000034807.10	novel	3207	12	NA	NA	-27	0	intron_retention	FALSE	canonical	3	838	junction_7	59.7648726259832	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTGGGTTTGGTGCCCC	NA	False	NA	30	True	ATTAAA	-22	NA	72063787	72077555	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_72064089_72064727_72064839_72065553_72065672_72070193_72070329_72070718_72070924_72072295_72072416_72073244_72073322_72073391_72073499_72074407_72075475_72075733_72075941_72076136
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090399	chr8	-	3535	3	FSM	ENSMUSG00000031803.9	ENSMUST00000034260.9	3055	3	-162	-318	-162	318	multi-exon	FALSE	canonical	3	105	junction_2	27	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGATTGTTGCAATGACAT	8359	False	NA	3	True	AATAAA	-22	NA	72154595	72143081	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_72145800_72145960_72146544_72154361
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090404	chr8	-	2654	3	NNC	ENSMUSG00000031803.9	novel	3055	3	NA	NA	-1749	-454	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	71.5	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGGTAATATTTCTGTTT	6772	False	NA	-3	True	NA	NA	NA	72156182	72143853	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_72145800_72145960_72146544_72156057
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090410	chr8	-	2624	3	NNC	ENSMUSG00000031803.9	novel	3055	3	NA	NA	-1745	-456	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	75.5	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCCGGTAATATTTCTGT	6776	False	NA	-5	True	NA	NA	NA	72156178	72143855	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_72145800_72145960_72146544_72156081
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090421	chr8	+	2729	4	FSM	ENSMUSG00000052446.18	ENSMUST00000109997.10	2713	4	-16	0	-11	0	multi-exon	FALSE	canonical	3	347	junction_3	51.1468474101777	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	16	True	AATAAA	-18	NA	72704898	72724177	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090439	chr8	+	2185	8	FSM	ENSMUSG00000031799.11	ENSMUST00000003575.11	2158	8	-27	0	-27	0	multi-exon	FALSE	canonical	3	688	junction_1	35.3714978074559	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGATTTATTCTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	72889045	72906986	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_72889298_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090445	chr8	+	2033	8	FSM	ENSMUSG00000031799.11	ENSMUST00000238492.2	2044	8	11	0	11	0	multi-exon	FALSE	canonical	3	103	junction_1	228.433708510092	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGGATTTATTCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	72889662	72906984	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_72889765_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090490	chr8	+	1971	3	FSM	ENSMUSG00000055148.8	ENSMUST00000067912.8	1847	3	-121	-3	-121	3	multi-exon	FALSE	canonical	3	2955	junction_2	16	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGGGTTTAGCCAAACT	NA	False	NA	24	True	ATTAAA	-19	NA	73072755	73075503	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_73072994_73073269_73074087_73074587
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090498	chr8	+	2306	2	ISM	ENSMUSG00000055148.8	ENSMUST00000067912.8	1847	3	29	13	29	-13	intron_retention	FALSE	canonical	3	2987	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTGGTACCATCTT	NA	False	NA	8	True	ATTAAA	-3	NA	73072905	73075487	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr8_+_73072994_73073269
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090504	chr8	+	1552	3	NNC	ENSMUSG00000055148.8	novel	1847	3	NA	NA	29	-305	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	1473.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGTAGTGGTGTGGCTG	NA	False	NA	34	True	ATTAAA	-21	NA	73072905	73075195	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_73073033_73073269_73074087_73074587
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090508	chr8	+	1789	2	NIC	ENSMUSG00000055148.8	novel	1847	3	NA	NA	29	-305	intron_retention	FALSE	canonical	3	2955	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGTAGTGGTGTGGCTG	NA	False	NA	34	True	ATTAAA	-21	NA	73072905	73075195	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_73074087_73074587
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090516	chr8	+	2582	1	NIC	ENSMUSG00000055148.8	novel	1847	3	NA	NA	29	-13	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTGGTACCATCTT	NA	False	NA	8	True	ATTAAA	-3	NA	73072905	73075487	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_73072900_73075500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090535	chr8	-	2991	23	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	33	junction_2	86.0488161471765	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGACTATCTTCTTTTT	NA	False	NA	NA	False	TATAAA	-43	NA	73175295	73094838	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_-_73095369_73099809_73100016_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090540	chr8	-	2814	22	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	-20	4	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	69.7814859566126	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGACTATCTTCTTTTT	NA	False	NA	NA	False	TATAAA	-43	NA	73175324	73094838	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_-_73095369_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090559	chr8	+	2430	8	FSM	ENSMUSG00000052794.14	ENSMUST00000064853.13	2887	8	-3	460	-3	-100	multi-exon	FALSE	canonical	3	59	junction_1	11.7334338276463	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCTGCTTGTTTA	NA	False	NA	6	True	AGTAAA	-21	NA	73197720	73214385	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_73197834_73198593_73199315_73203293_73203586_73205202_73205277_73208957_73209412_73211816_73211913_73212446_73212614_73213872
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090571	chr8	-	3758	18	FSM	ENSMUSG00000052488.8	ENSMUST00000079510.6	3713	18	-39	-6	3	6	multi-exon	TRUE	canonical	3	101	junction_13	118.126552277382	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTCTAGCTGTGGATGA	NA	False	NA	-6	True	AATAAA	-16	NA	73229002	73214326	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222364_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090572	chr8	-	3730	18	FSM	ENSMUSG00000052488.8	ENSMUST00000212991.2	3646	18	63	-147	-2	6	multi-exon	FALSE	canonical	3	416	junction_13	64.9317448394025	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTCTAGCTGTGGATGA	NA	False	NA	-6	True	AATAAA	-16	NA	73229007	73214326	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090588	chr8	-	3047	3	FSM	ENSMUSG00000045248.7	ENSMUST00000058534.7	2997	3	-44	-6	-44	6	multi-exon	FALSE	canonical	3	122	junction_2	2.5	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGGAATCATTTCTCAT	3573	False	NA	1	True	AATAAA	-21	NA	73302158	73248398	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_73250951_73251366_73251442_73301738
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090721	chr8	+	2785	12	FSM	ENSMUSG00000037134.18	ENSMUST00000056237.15	2781	12	0	-4	0	4	multi-exon	FALSE	canonical	3	124	junction_5	20.627751506924	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATGTAACATTATTTTT	NA	False	NA	17	True	AATAAA	-22	NA	78276025	78307971	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_78276366_78282293_78282443_78285507_78285745_78287435_78287604_78289042_78289146_78290604_78290712_78291582_78291776_78294803_78294988_78298637_78299356_78303966_78304121_78307254_78307378_78307662
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090751	chr8	-	2077	5	FSM	ENSMUSG00000031683.17	ENSMUST00000130325.8	3792	5	14	1701	14	-115	multi-exon	FALSE	canonical	3	636	junction_4	242.43865203387	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTAGTCTCCTCGTGGTCT	NA	False	NA	-5	True	NA	NA	NA	79547755	79533194	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79546615_79546715_79547676
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090773	chr8	+	229	1	Intergenic	novelGene_348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTTGATCATGGTTTTC	NA	False	NA	NA	False	NA	NA	NA	80334430	80334659	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_80334400_80334700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090830	chr8	-	4714	10	FSM	ENSMUSG00000038250.10	ENSMUST00000042724.8	4707	10	-7	0	-7	0	multi-exon	FALSE	canonical	3	94	junction_4	8.95392871906924	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCTACTGTCCTGTTTT	NA	False	NA	-9	True	ATTAAA	-14	NA	81741564	81707361	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_81708610_81711066_81712430_81714115_81714223_81716635_81716730_81719824_81720019_81722310_81722470_81727681_81727784_81731960_81732091_81738795_81738932_81740383
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090863	chr8	+	2265	3	FSM	ENSMUSG00000005483.11	ENSMUST00000005620.10	2996	3	-18	749	-18	-749	multi-exon	FALSE	canonical	3	562	junction_2	45.5	465	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGCAGTCCTTCGACTCT	NA	False	NA	11	True	ATTAAA	-20	NA	84334803	84338533	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_84335172_84336442_84337024_84337217
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090871	chr8	+	1763	7	FSM	ENSMUSG00000019433.10	ENSMUST00000019577.10	1522	7	-143	-98	-143	98	multi-exon	FALSE	canonical	3	964	junction_1	101.245027312731	410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTCTCCCTGCTTTCTT	NA	False	NA	24	True	NA	NA	NA	84379162	84391421	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_84379367_84387587_84387910_84388583_84388770_84388863_84389045_84389677_84389791_84390548_84390631_84390746
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090918	chr8	-	2730	18	FSM	ENSMUSG00000002885.15	ENSMUST00000002964.14	2986	18	143	113	0	0	multi-exon	FALSE	canonical	2	28	junction_14	43.193056599508	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCACGTTTGCTGGTGA	NA	False	NA	-11	True	ATTAAA	-19	NA	84467812	84449992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090920	chr8	-	3012	20	FSM	ENSMUSG00000002885.15	ENSMUST00000075843.13	3000	20	-14	2	0	0	multi-exon	FALSE	canonical	3	18	junction_16	54.4176930653952	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCACGTTTGCTGGTGA	NA	False	NA	-11	True	ATTAAA	-19	NA	84467812	84449992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84458531_84458667_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090972	chr8	-	892	2	FSM	ENSMUSG00000045232.5	ENSMUST00000061923.5	634	2	11	-269	11	269	multi-exon	FALSE	canonical	3	87	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCACGCGTGCGTATCAT	2859	False	NA	-2	True	AATAAA	-17	NA	84771618	84769288	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_84769961_84771398
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000090983	chr8	-	2223	13	FSM	ENSMUSG00000037103.9	ENSMUST00000210279.2	2199	13	-24	0	-19	0	multi-exon	FALSE	canonical	3	169	junction_7	21.0218140669797	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGTGTCCTGTTCTGT	9238	False	NA	-3	True	ACTAAA	-17	NA	84831416	84823700	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_84824138_84824365_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091046	chr8	-	1523	1	FSM	ENSMUSG00000053560.6	ENSMUST00000060427.6	1524	1	2	-1	2	1	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTTGTCTGGCTTGCTTC	NA	False	NA	0	True	AATAAA	-21	NA	85389481	85387958	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_85388000_85389500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091084	chr8	+	2114	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109767.9	2138	17	24	0	-1	0	multi-exon	FALSE	canonical	3	116	junction_1	116.091541869983	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	15	True	AATAAA	-15	NA	85415899	85426416	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091091	chr8	+	2034	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	11	-1	3	0	multi-exon	FALSE	canonical	3	38	junction_1	132.785409001705	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	15	True	AATAAA	-15	NA	85415903	85426416	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_85415979_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091101	chr8	+	2375	16	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	3	0	intron_retention	FALSE	canonical	3	179	junction_1	102.688395968905	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	15	True	AATAAA	-15	NA	85415903	85426416	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_85416006_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091104	chr8	+	2299	16	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	3	0	intron_retention	FALSE	canonical	3	129	junction_1	113.803026712337	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	15	True	AATAAA	-15	NA	85415903	85426416	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_85416006_85416336_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091146	chr8	+	1765	2	FSM	ENSMUSG00000033751.6	ENSMUST00000036734.6	2494	2	732	-3	732	3	multi-exon	FALSE	canonical	3	736	junction_1	0	416	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATATACTTTCTCTTA	3406	False	NA	NA	False	NA	NA	NA	85558882	85562114	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_85559270_85560736
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091180	chr8	-	1879	9	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-36	-241	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	438.293779901107	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	-4	True	ATTAAA	-18	NA	85573495	85568719	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571198_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091181	chr8	-	1877	9	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-36	-241	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	435.168286413429	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	-4	True	ATTAAA	-18	NA	85573495	85568719	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571497_85571595_85572490_85572695_85572878_85572981_85573336
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091191	chr8	+	1832	13	FSM	ENSMUSG00000003808.19	ENSMUST00000003906.13	1826	13	-5	-1	-5	1	multi-exon	FALSE	canonical	3	551	junction_9	56.0676055212713	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTGTCATTCATTTCAT	NA	False	NA	39	True	AATAAA	-39	NA	85583612	85595887	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091205	chr8	+	781	5	FSM	ENSMUSG00000003824.13	ENSMUST00000170296.2	929	5	98	50	16	-50	multi-exon	FALSE	canonical	3	66	junction_1	678.634428466461	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGTCATACTTTATTCC	NA	False	NA	31	True	ATTAAA	-14	NA	85598837	85614025	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_85598883_85599330_85599462_85610059_85610214_85612563_85612753_85613763
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091231	chr8	-	2803	9	ISM	ENSMUSG00000053693.17	ENSMUST00000109741.9	4872	26	18530	2	5291	1	3prime_fragment	FALSE	canonical	1	2	junction_8	3.38193731461717	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGGGTTCACACCT	NA	False	NA	-1	True	AATAAA	-18	NA	85645452	85638533	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr8_-_85639871_85639948_85640137_85642083_85642221_85642308_85642432_85642784_85643015_85643181_85643389_85644355_85644604_85644681_85644861_85645298
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091241	chr8	+	411	2	ISM	ENSMUSG00000003812.14	ENSMUST00000128400.2	4073	7	4651	206	-19	-206	3prime_fragment	FALSE	canonical	3	74	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTGTTGGGGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	85640000	85640944	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr8_+_85640158_85640690
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091252	chr8	-	1730	10	FSM	ENSMUSG00000052926.17	ENSMUST00000109736.9	2981	10	194	1057	35	0	multi-exon	FALSE	canonical	3	62	junction_9	446.653979919331	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	4748	False	NA	-8	True	AATAAA	-14	NA	85696175	85684295	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694291_85694498_85695914
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091269	chr8	+	900	6	FSM	ENSMUSG00000005161.16	ENSMUST00000005292.15	1500	6	83	517	0	6	multi-exon	FALSE	canonical	3	3496	junction_3	236.69169820676	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTGGTGTGTGTTT	NA	False	NA	19	True	AATAAA	-19	NA	85696322	85700946	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091274	chr8	-	1812	1	FSM	ENSMUSG00000052837.8	ENSMUST00000064922.7	1809	1	-3	0	-3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGGTCTCTTTTTTC	NA	False	NA	-1	True	AGTAAA	-21	NA	85705350	85703538	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_85703500_85705400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091310	chr8	+	2396	16	FSM	ENSMUSG00000052566.9	ENSMUST00000210326.2	3080	16	-14	698	11	-698	multi-exon	FALSE	canonical	3	335	junction_11	30.1194658356058	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGTTGTGAGCCACCAT	NA	False	NA	NA	False	NA	NA	NA	85717256	85725637	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091326	chr8	+	187	1	Intergenic	novelGene_349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATCCCAATCTGGAGTT	279	False	NA	NA	False	NA	NA	NA	85731098	85731285	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_85731100_85731300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091353	chr8	+	1861	10	FSM	ENSMUSG00000008167.15	ENSMUST00000095220.4	1907	10	46	0	4	0	multi-exon	TRUE	canonical	3	54	junction_4	11.5864970366477	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTGTGAGCTTTCTGT	NA	False	NA	22	True	AATAAA	-22	NA	85786729	85793750	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791126_85791209_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091365	chr8	+	522	2	FSM	ENSMUSG00000060038.15	ENSMUST00000129826.2	659	2	-49	186	0	-186	multi-exon	FALSE	canonical	3	212	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTTATTTTTCAGTTAAGA	NA	False	NA	NA	False	NA	NA	NA	85798385	85799305	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_85798683_85799080
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091454	chr8	-	2937	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	-18	0	-18	0	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCAGCATTCTTCAGT	NA	False	NA	NA	False	AATAAA	-15	NA	86281991	86264261	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091487	chr8	-	2151	2	FSM	ENSMUSG00000036840.6	ENSMUST00000045296.6	1968	2	-109	-74	-109	74	multi-exon	FALSE	canonical	3	375	junction_1	0	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTGTTTACTTTAGC	NA	False	NA	NA	False	ATTAAA	-25	NA	87472671	87450560	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_87452485_87472444
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091492	chr8	-	338	1	Genic_Genomic	ENSMUSG00000031652.12	novel	NA	NA	NA	NA	2570	1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGAGGGTGGTGCTTT	NA	False	NA	-7	True	NA	NA	NA	87568103	87567765	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr8_-_87567800_87568100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091494	chr8	-	3351	7	FSM	ENSMUSG00000031652.12	ENSMUST00000034074.8	6469	7	-51	3169	-51	11	multi-exon	FALSE	canonical	3	315	junction_2	32.4790530786981	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTTCCTTAAGGAAAGCAA	NA	False	NA	NA	False	AATAAA	-34	NA	87611937	87570935	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_87571670_87573442_87573551_87575074_87575183_87578252_87578350_87579786_87579918_87587053_87588739_87611449
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091504	chr8	+	538	1	FSM	ENSMUSG00000066362.6	ENSMUST00000183478.2	538	1	5	-5	5	5	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTCAGACACTAAAGAGGAG	NA	False	NA	42	True	AATAAA	-31	NA	87774321	87774859	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_87774300_87774900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091513	chr8	+	470	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182758.2	447	4	-23	0	-5	0	multi-exon	FALSE	canonical	3	44	junction_1	69.6866000191014	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	204	False	NA	7	True	AATAAA	-15	NA	88199738	88252182	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_88199859_88248363_88248442_88250923_88251056_88252042
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091532	chr8	+	3249	15	FSM	ENSMUSG00000031657.17	ENSMUST00000034079.14	3251	15	2	0	1	0	multi-exon	FALSE	canonical	3	239	junction_7	19.6926641267291	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTGTCATACAGATT	NA	False	NA	NA	False	AATAAA	-16	NA	88864484	88898655	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091533	chr8	+	3246	15	NNC	ENSMUSG00000031657.17	novel	3251	15	NA	NA	1	0	intron_retention	FALSE	canonical	0	0	junction_4	72.8924634272282	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTGTCATACAGATT	NA	False	NA	NA	False	AATAAA	-16	NA	88864484	88898655	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868407_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091545	chr8	+	2302	10	FSM	ENSMUSG00000031661.13	ENSMUST00000034086.13	3035	10	3	730	3	551	multi-exon	FALSE	canonical	2	13	junction_7	4.46661138716484	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTGTGGTTTCCCAAGAT	NA	False	NA	NA	False	ATTAAA	-13	NA	89247984	89319516	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_89248160_89248274_89248308_89248914_89249049_89300825_89300893_89309830_89309938_89311781_89311878_89315781_89315930_89316355_89316441_89317350_89317479_89318187
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091573	chr8	-	2134	10	FSM	ENSMUSG00000031667.17	ENSMUST00000109609.9	1171	10	7	-970	7	0	multi-exon	TRUE	canonical	3	139	junction_9	96.0081015100057	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATTTTTTTAACTTCCAG	NA	False	NA	-3	True	AATAAA	-17	NA	91860644	91850126	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857777_91860527
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091578	chr8	-	2075	10	FSM	ENSMUSG00000031667.17	ENSMUST00000125257.3	2079	10	6	-2	2	2	multi-exon	FALSE	canonical	3	258	junction_9	63.7020456287233	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTGTTAAATAATTTTCT	NA	False	NA	-71	True	AATAAA	-20	NA	91860649	91850194	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091589	chr8	+	3565	9	FSM	ENSMUSG00000055932.16	ENSMUST00000069718.15	3564	9	-1	0	-1	0	multi-exon	FALSE	canonical	3	202	junction_7	44.2492937796752	245	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCGTCCGTGCTTTTCTCC	NA	False	NA	16	True	AATAAA	-24	NA	92040151	92395067	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786_92211907_92249399_92249525_92392909
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091595	chr8	-	2296	4	FSM	ENSMUSG00000031734.14	ENSMUST00000175795.4	2748	4	111	341	-41	-341	multi-exon	FALSE	canonical	2	5	junction_1	2.82842712474619	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCTCTGTATAGTGACGAG	NA	False	NA	NA	False	TTTAAA	-38	NA	92528584	92525493	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_92525605_92526038_92526106_92526300_92527427_92527592
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091641	chr8	+	601	2	FSM	ENSMUSG00000031765.9	ENSMUST00000212291.2	633	2	30	2	0	0	multi-exon	FALSE	canonical	3	14831	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGGTTTTCTTGGTGT	NA	False	NA	27	True	AATAAA	-16	NA	94905868	94906953	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_94905967_94906450
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091645	chr8	+	1087	1	FSM	ENSMUSG00000031765.9	ENSMUST00000211807.2	1085	1	0	-2	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94905868	94906955	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_94905900_94907000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091660	chr8	+	2750	23	FSM	ENSMUSG00000032939.15	ENSMUST00000212824.2	2928	23	-28	206	-4	0	multi-exon	FALSE	canonical	3	35	junction_1	328.081966678305	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	94941200	95041488	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_94941260_94947187_94947240_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091666	chr8	+	2701	22	NNC	ENSMUSG00000032939.15	novel	2707	22	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	246.553366146716	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	94941202	95041488	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_94941265_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091674	chr8	+	1874	8	FSM	ENSMUSG00000031770.17	ENSMUST00000034220.8	1873	8	0	-1	0	1	multi-exon	FALSE	canonical	3	44	junction_2	160.784175279808	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGACTCCCATTGTCCT	NA	False	NA	29	True	AATAAA	-22	NA	95113122	95121987	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_95113367_95115983_95116062_95116151_95116224_95117345_95117477_95118359_95118483_95118801_95119153_95120423_95120530_95121218
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091715	chr8	+	3120	3	FSM	ENSMUSG00000031778.14	ENSMUST00000034230.7	3315	3	195	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGGAACTTTTCTCTGGG	2374	False	NA	NA	False	AATAAA	-24	NA	95498831	95509055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_95498963_95504655_95504777_95506187
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091723	chr8	-	1824	9	FSM	ENSMUSG00000031781.15	ENSMUST00000034233.15	1807	9	-8	-9	-8	9	multi-exon	FALSE	canonical	3	211	junction_8	506.411394026635	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGAGTGTGTCTTTGTGT	NA	False	NA	-5	True	ATTAAA	-28	NA	95564901	95549179	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564581
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091742	chr8	+	1203	9	FSM	ENSMUSG00000031783.11	ENSMUST00000109521.4	1580	9	48	329	-3	172	multi-exon	FALSE	canonical	3	1933	junction_5	86.4056566435323	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCGTCATCGTGCCACT	NA	False	NA	29	True	AATAAA	-20	NA	95584125	95590541	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091794	chr8	+	1733	7	NIC	ENSMUSG00000031792.16	novel	1758	7	NA	NA	8	2	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	78.3212756677406	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTGTCTTATTTTAAAC	NA	False	NA	14	True	AATAAA	-15	NA	96058919	96074137	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_96059075_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96073154
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091805	chr8	+	190	1	Intergenic	novelGene_350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAATGCATCATGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	96127335	96127525	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_96127300_96127500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091812	chr8	+	261	1	Intergenic	novelGene_351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTTGGCTATAACTATGA	NA	False	NA	NA	False	AGTAAA	-6	NA	96325206	96325467	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_96325200_96325500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091823	chr8	+	2743	14	FSM	ENSMUSG00000036564.18	ENSMUST00000080666.8	2738	14	-7	2	-7	2	multi-exon	FALSE	canonical	3	13	junction_5	6.1711295754251	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGTGTGTCGTGTTTCCTA	NA	False	NA	7	True	AATAAA	-12	NA	96429683	96441582	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_96429806_96432815_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96439805
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091874	chr8	-	3566	24	ISM	ENSMUSG00000036550.17	ENSMUST00000068452.10	8152	48	-64	28848	-12	-1188	5prime_fragment	FALSE	canonical	3	469	junction_5	184.483051306297	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTTTATTTTCAACAAT	NA	False	NA	NA	False	NA	NA	NA	96534073	96474933	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr8_-_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481607_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091882	chr8	+	808	1	FSM	ENSMUSG00000061104.6	ENSMUST00000074053.6	789	1	8	-27	8	27	mono-exon	FALSE	NA	NA	NA	NA	NA	779	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTGTCACAAAGAATCAATT	NA	False	NA	NA	False	AATACA	-40	NA	96551981	96552789	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_96552000_96552800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091883	chr8	-	3306	12	FSM	ENSMUSG00000036534.7	ENSMUST00000212270.2	3315	12	13	-4	-4	0	multi-exon	FALSE	canonical	3	212	junction_11	48.4964001390441	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTTATCTTCT	NA	False	NA	0	True	AATAAA	-19	NA	96580154	96562547	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091884	chr8	-	3332	12	NNC	ENSMUSG00000036534.7	novel	3333	12	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	97.860585604604	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTTATCTTCT	NA	False	NA	0	True	AATAAA	-19	NA	96580141	96562547	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_96564300_96567002_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091890	chr8	-	3284	12	FSM	ENSMUSG00000036534.7	ENSMUST00000040481.4	3333	12	49	0	32	0	multi-exon	FALSE	canonical	2	9	junction_11	95.4970468151409	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTTATCTTCT	NA	False	NA	0	True	AATAAA	-19	NA	96580118	96562547	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580099
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091907	chr8	-	2415	10	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	-39	1	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	187.671567596028	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTCTGCTTTTCTACTT	NA	False	NA	-3	True	AATAAA	-18	NA	96615059	96590760	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_96591876_96593444_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091946	chr8	-	4602	13	FSM	ENSMUSG00000035770.9	ENSMUST00000041769.8	4627	13	25	0	-7	0	multi-exon	FALSE	canonical	3	129	junction_6	10.797054639525	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTTTTGGTGACTTTGTT	1793	False	NA	-1	True	AATAAA	-20	NA	105169654	105144311	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_105147315_105148918_105149036_105149744_105149863_105150217_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994_105164226_105167105_105167223_105169105_105169180_105169326
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091958	chr8	-	1717	19	FSM	ENSMUSG00000031878.19	ENSMUST00000162466.8	1735	19	18	0	-4	0	multi-exon	FALSE	canonical	3	78	junction_15	163.229558869982	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3352	False	NA	NA	False	AATAAA	-19	NA	105261250	105237659	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254818_105254850_105256687_105256749_105257024_105257129_105261143
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091959	chr8	-	1787	20	FSM	ENSMUSG00000031878.19	ENSMUST00000034349.10	1808	20	21	0	-2	0	multi-exon	FALSE	canonical	3	645	junction_15	52.7352662859429	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3354	False	NA	NA	False	AATAAA	-19	NA	105261248	105237659	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091966	chr8	+	3515	2	FSM	ENSMUSG00000048371.9	ENSMUST00000059588.8	5692	2	16	2161	16	-2161	multi-exon	FALSE	canonical	3	69	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGAGCCGGGCAGTGTTG	NA	False	NA	NA	False	NA	NA	NA	105318098	105323497	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_105318228_105320111
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091983	chr8	+	2966	16	NIC	ENSMUSG00000031889.10	novel	2916	16	NA	NA	-21	0	combination_of_known_junctions	TRUE	canonical	3	12	junction_12	66.0092922751537	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	ACTAAA	-2	NA	105951816	105979685	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105975960_105976095_105976228_105976288_105977350_105977424_105978229
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000091990	chr8	-	2292	2	FSM	ENSMUSG00000069920.11	ENSMUST00000093217.9	2325	2	34	-1	34	0	multi-exon	FALSE	canonical	2	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTTCTCTTCTCAATTC	9997	False	NA	NA	False	ATTAAA	-16	NA	105981749	105979269	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_105981475_105981662
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092020	chr8	+	785	6	FSM	ENSMUSG00000014856.13	ENSMUST00000015000.12	785	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	56.0556865982391	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTGGGTGATGATG	251	False	NA	18	True	AATAAA	-20	NA	106052985	106055689	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055091_106055239_106055325_106055403
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092044	chr8	+	3840	12	FSM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	-58	0	-47	0	multi-exon	FALSE	canonical	3	206	junction_10	73.0190736997323	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	False	NA	38	True	AATAAA	-21	NA	106363152	106409554	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_106363353_106370147_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406702_106406892_106408066
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092066	chr8	+	1249	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212634.2	678	3	0	-571	0	1	multi-exon	FALSE	canonical	0	0	junction_1	13	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGGTCCTTCTGTGTCC	NA	False	NA	12	True	ATTAAA	-18	NA	106427779	106430126	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_106427919_106428805_106429029_106429239
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092071	chr8	+	1277	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212352.2	1234	3	-39	-4	0	1	multi-exon	FALSE	canonical	2	20	junction_1	6.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGGTCCTTCTGTGTCC	NA	False	NA	12	True	ATTAAA	-18	NA	106427779	106430126	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_106427950_106428805_106429029_106429242
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092086	chr8	-	1326	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	-4	2	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_7	45.9436211734623	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTTCCATAGGAGCTG	NA	False	NA	-12	True	ATTAAA	-17	NA	106434846	106430280	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434788
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092118	chr8	-	2655	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	4	intron_retention	FALSE	canonical	3	191	junction_9	18.3816293489087	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCGATATTGTATTTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	106578640	106571300	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_-_106571628_106571705_106571811_106571891_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092137	chr8	+	1877	1	FSM	ENSMUSG00000036442.9	ENSMUST00000040445.9	1819	1	-53	-5	-53	5	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTCGACTTTTTTTTTTT	NA	False	NA	17	True	ATTAAA	-24	NA	106581710	106583587	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_106581700_106583600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092151	chr8	+	4780	29	FSM	ENSMUSG00000036270.17	ENSMUST00000040254.16	4780	29	0	0	0	0	multi-exon	TRUE	canonical	3	268	junction_16	54.5128121057194	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTCTTTGATGTGACTA	3256	False	NA	31	True	AATAAA	-23	NA	106607512	106619857	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092161	chr8	+	4692	29	FSM	ENSMUSG00000036270.17	ENSMUST00000119261.8	4645	29	-47	0	23	0	multi-exon	FALSE	canonical	3	70	junction_18	83.7903344847198	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTGATTTTAGTT	3279	False	NA	14	True	AATAAA	-6	NA	106607535	106619840	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616304_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092164	chr8	+	4746	29	NIC	ENSMUSG00000036270.17	novel	4780	29	NA	NA	23	0	intron_retention	FALSE	canonical	3	40	junction_14	98.4644605936578	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTGATTTTAGTT	3279	False	NA	14	True	AATAAA	-6	NA	106607535	106619840	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614749_106614941_106615019_106615151_106615227_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092182	chr8	-	570	3	FSM	ENSMUSG00000031897.10	ENSMUST00000212938.2	646	3	89	-13	87	4	multi-exon	FALSE	canonical	3	246	junction_1	9	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAAGGCTGTGTCTTTCTT	NA	False	NA	-3	True	AATAAA	-24	NA	106663570	106662362	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_106662538_106662627_106662780_106663327
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092203	chr8	-	1842	1	FSM	ENSMUSG00000045538.7	ENSMUST00000058579.7	2262	1	425	-5	425	5	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATGATTTCTTTTTCTT	NA	False	NA	-4	True	AATAAA	-22	NA	106738089	106736247	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_106736200_106738100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092212	chr8	+	1906	16	FSM	ENSMUSG00000031901.13	ENSMUST00000034375.11	1860	16	-24	-22	-24	1	multi-exon	FALSE	canonical	3	148	junction_9	22.4047613987146	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCTGACATAATTTTTCT	NA	False	NA	34	True	AATAAA	-34	NA	106738114	106780473	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106758329_106758374_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092225	chr8	+	2739	6	FSM	ENSMUSG00000031903.8	ENSMUST00000034377.8	2706	6	-33	0	-33	0	multi-exon	FALSE	canonical	3	107	junction_2	8.49941174435031	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCCTTGTCCTGCTCTGA	6164	False	NA	14	True	AATAAA	-20	NA	106876997	106891347	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_106877246_106881499_106881657_106886794_106886914_106887212_106887312_106887715_106887941_106889456
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092239	chr8	-	1622	4	NNC	ENSMUSG00000033106.7	novel	1246	5	NA	NA	0	279	intron_retention	FALSE	canonical	3	16	junction_2	53.0471488394994	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCAGTTCTTTTTTAGA	NA	False	NA	-2	True	AATAAA	-22	NA	106937567	106927069	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_106927782_106928862_106928992_106930962_106931173_106936996
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092262	chr8	+	2188	17	NIC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	0	-1100	combination_of_known_splicesites	FALSE	canonical	3	37	junction_16	255.302516634678	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	1906	False	NA	26	True	AATAAA	-27	NA	106937654	106978326	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106978110
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092278	chr8	+	2241	18	NNC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	2	-1100	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_8	258.880635411387	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	1908	False	NA	26	True	AATAAA	-27	NA	106937656	106978326	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967859_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092286	chr8	+	3248	16	FSM	ENSMUSG00000061048.9	ENSMUST00000080797.8	4384	16	-34	1170	-34	-1170	multi-exon	FALSE	canonical	3	35	junction_1	6.02218122167265	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTAGGGGAGTGGATTT	NA	False	NA	9	True	ATTAAA	-23	NA	107237488	107282759	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_107237639_107237855_107237974_107262039_107262114_107263192_107263319_107263447_107263604_107263705_107263851_107265625_107265802_107266426_107266556_107267938_107268125_107270282_107270525_107270748_107270895_107271634_107271860_107274253_107274464_107279020_107279152_107279497_107279645_107281872
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092298	chr8	+	4449	16	FSM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	-18	-1	-18	1	multi-exon	FALSE	canonical	3	808	junction_8	93.5918799896658	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGCTCACTTGATTTGA	5031	False	NA	27	True	ATTAAA	-19	NA	107329964	107396879	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092357	chr8	-	3292	3	NIC	ENSMUSG00000046691.15	novel	2931	4	NA	NA	0	-1	intron_retention	FALSE	canonical	3	308	junction_1	3	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGCTGTCGCTCCATT	NA	False	NA	-32	True	AATAAA	-12	NA	107620225	107610526	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_-_107613670_107613932_107613989_107620132
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092362	chr8	+	2276	17	FSM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	-36	-8	-21	8	multi-exon	TRUE	canonical	3	1046	junction_1	100.936996902771	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTAAATTATTTTCTAA	NA	False	NA	20	True	AATAAA	-25	NA	107620246	107649728	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092368	chr8	+	2261	17	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	-10	8	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_1	299.962074425668	127	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTAAATTATTTTCTAA	NA	False	NA	20	True	AATAAA	-25	NA	107620257	107649728	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_107620341_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092376	chr8	+	2234	17	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	5	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	315.118027243365	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGACATTTTAAATTATTT	NA	False	NA	15	True	AATAAA	-20	NA	107620287	107649723	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_107620345_107621222_107621384_107624691_107624888_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092384	chr8	+	203	1	Intergenic	novelGene_352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGGTGGGAGGGAGCTTC	NA	False	NA	NA	False	NA	NA	NA	107650516	107650719	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_107650500_107650700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092431	chr8	+	3015	5	FSM	ENSMUSG00000031917.13	ENSMUST00000034392.13	3036	5	21	0	-3	0	multi-exon	FALSE	canonical	3	714	junction_4	51.2688989544344	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCTCCGTATCAACTCT	NA	False	NA	19	True	ATTAAA	-20	NA	107783529	107787563	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092433	chr8	-	2670	10	FSM	ENSMUSG00000031921.18	ENSMUST00000068421.13	2667	10	-1	-2	-1	0	multi-exon	FALSE	canonical	3	17	junction_3	7.27247474309048	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTCTAGCTGGTTCTTG	NA	False	NA	0	True	ATTAAA	-17	NA	107823178	107796031	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_107797198_107798506_107798548_107799191_107799278_107803241_107803632_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092468	chr8	-	2404	8	NIC	ENSMUSG00000003848.15	novel	1658	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	448	junction_3	29.242825737997	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGTTTTATTTGGG	NA	False	NA	0	True	AATAAA	-17	NA	108151681	108139117	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_-_108139816_108142737_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092470	chr8	-	1665	9	FSM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	-4	-3	-2	0	multi-exon	FALSE	canonical	3	419	junction_2	34.7902195307819	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGTTTTATTTGGG	NA	False	NA	0	True	AATAAA	-17	NA	108151685	108139117	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092515	chr8	+	211	1	Intergenic	novelGene_353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCAGGCCATCAAGCTTG	NA	False	NA	NA	False	NA	NA	NA	108317903	108318114	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_108317900_108318100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092545	chr8	-	2344	10	FSM	ENSMUSG00000031729.7	ENSMUST00000034164.6	2304	10	-24	-16	-24	16	multi-exon	FALSE	canonical	3	462	junction_2	71.0226880807973	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGAATTTGGATTTTAG	NA	False	NA	3	True	AATAAA	-36	NA	110419916	110397940	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_110399274_110402007_110402057_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092585	chr8	+	3986	23	NNC	ENSMUSG00000031731.17	novel	3692	23	NA	NA	62	0	intron_retention	FALSE	canonical	0	0	junction_6	46.8494158831788	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTCCCACATTGTACTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110505247	110587990	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556312_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092622	chr8	+	3095	19	FSM	ENSMUSG00000010936.12	ENSMUST00000034190.11	3069	19	-22	-4	-8	4	multi-exon	FALSE	canonical	3	368	junction_15	41.1869046070606	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGCCTGCTCCTTCTCTG	7339	False	NA	20	True	AATAAA	-24	NA	111345208	111447034	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949_111437125_111438224_111438344_111439379_111439460_111442058_111442210_111446438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092636	chr8	+	3085	19	NNC	ENSMUSG00000010936.12	novel	3069	19	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	108.376002992781	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTCTGCCTGCTCCTTC	7349	False	NA	16	True	AATAAA	-20	NA	111345218	111447030	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409261_111436949_111437125_111438224_111438344_111439379_111439460_111442058_111442210_111446438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092643	chr8	+	2930	18	NIC	ENSMUSG00000010936.12	novel	3069	19	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_17	108.822098559751	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTCTGCCTGCTCCTTC	7349	False	NA	16	True	AATAAA	-20	NA	111345218	111447030	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949_111437125_111438224_111438344_111439379_111439460_111446438
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092655	chr8	+	2317	15	ISM	ENSMUSG00000010936.12	ENSMUST00000212663.2	2605	18	5	3688	0	8	5prime_fragment	FALSE	canonical	3	404	junction_10	33.1637864951196	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTAATTGCTCTCCTTGT	7370	False	NA	NA	False	AAAACA	-3	NA	111345239	111437323	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092664	chr8	+	202	1	Intergenic	novelGene_354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTCAGGAATCTGATAC	NA	False	NA	NA	False	NA	NA	NA	111489874	111490076	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_111489900_111490100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092675	chr8	-	4261	26	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-6	-253	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_25	162.261990620108	18	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCGTGTGTAGTTTTTG	NA	False	NA	-28	True	TATAAA	-17	NA	111573425	111537123	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573334
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092735	chr8	-	811	7	FSM	ENSMUSG00000015023.8	ENSMUST00000173183.2	731	7	-26	-54	4	54	multi-exon	FALSE	canonical	3	259	junction_3	37.1786228900426	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGTGTGTCATGGGCT	7690	False	NA	NA	False	AATAAA	-22	NA	111724428	111707050	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092766	chr8	+	3424	22	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-9	-2095	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	773.637202790785	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	16	True	AATAAA	-18	NA	111760501	111782201	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_111760541_111760803_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092788	chr8	+	3416	21	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-4	-2094	at_least_one_novel_splicesite	FALSE	canonical	2	49	junction_1	741.049787463703	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGATGTCATGCGCTCT	NA	False	NA	17	True	AATAAA	-19	NA	111760529	111782202	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_111760652_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092795	chr8	+	3394	22	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	0	-2094	at_least_one_novel_splicesite	FALSE	canonical	2	99	junction_1	755.304689912074	89	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGATGTCATGCGCTCT	NA	False	NA	17	True	AATAAA	-19	NA	111760533	111782202	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_111760577_111760838_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092804	chr8	+	3338	21	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	1	-2092	combination_of_known_junctions	FALSE	canonical	2	137	junction_1	723.09724622626	197	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGATGTCATGCGCTCTGC	NA	False	NA	19	True	AATAAA	-21	NA	111760534	111782204	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_111760577_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092809	chr8	+	3389	22	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	6	-2097	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	989.454466152723	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGGTGATGTCATGCGC	NA	False	NA	14	True	AATAAA	-16	NA	111760539	111782199	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_111760577_111760838_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773746_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092811	chr8	+	3422	22	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	6	-2095	at_least_one_novel_splicesite	FALSE	canonical	2	27	junction_1	768.623438967161	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	16	True	AATAAA	-18	NA	111760539	111782201	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_111760577_111760803_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092836	chr8	-	4749	26	FSM	ENSMUSG00000003316.15	ENSMUST00000169020.8	7021	26	-9	2281	-9	823	multi-exon	TRUE	canonical	3	407	junction_22	36.1425178978997	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTCCCTCCTTTCTGT	6419	False	NA	-22	True	ATTAAA	-22	NA	111985857	111883333	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_111884694_111886430_111886538_111887252_111887374_111888057_111888166_111888998_111889101_111889269_111889413_111890402_111890527_111892188_111892327_111895292_111895386_111896119_111896238_111897861_111897951_111899046_111899161_111899833_111899897_111900865_111900953_111904276_111904415_111905464_111905619_111907566_111907669_111909162_111909285_111914345_111914561_111915298_111915483_111917821_111917894_111919155_111919360_111924224_111924441_111926767_111926855_111928157_111928191_111985402
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092867	chr8	-	3562	26	FSM	ENSMUSG00000031959.16	ENSMUST00000038193.15	5083	26	1	1520	1	-109	multi-exon	TRUE	canonical	3	54	junction_4	5.67718239974725	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGCATTCTTTTTCTT	NA	False	NA	-1	True	TATAAA	-35	NA	112248723	112176948	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092875	chr8	+	2762	4	FSM	ENSMUSG00000033545.15	ENSMUST00000095176.12	3108	4	-347	693	-145	112	multi-exon	FALSE	canonical	3	106	junction_3	7.78888096369861	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTTTTCCCTTGTGAT	NA	False	NA	25	True	TATAAA	-16	NA	112263126	112349717	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_112264197_112335924_112336021_112345837_112345944_112348227
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092891	chr8	-	3147	7	FSM	ENSMUSG00000031955.11	ENSMUST00000212349.2	3116	7	-25	-6	-25	3	multi-exon	FALSE	canonical	3	127	junction_1	13.2591687354659	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTACAGAAATGCTTGAGA	NA	False	NA	1	True	AATAAA	-20	NA	112458793	112437102	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_112438027_112439232_112439323_112439970_112441069_112441914_112442032_112442246_112442409_112447330_112447964_112458670
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092902	chr8	+	276	1	Intergenic	novelGene_355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGGTTTTAAAAAATTCAAG	NA	False	NA	NA	False	TTTAAA	-13	NA	112479306	112479582	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_112479300_112479600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092907	chr8	-	1275	7	FSM	ENSMUSG00000031954.7	ENSMUST00000034432.7	1178	7	-77	-20	-77	20	multi-exon	FALSE	canonical	3	1827	junction_5	79.8013157786261	409	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGCCGTGCTCCTTCCCT	NA	False	NA	-3	True	AATAAA	-35	NA	112581000	112495102	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_112495420_112505882_112506042_112557501_112557622_112566989_112567118_112568414_112568623_112571725_112571844_112580775
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092914	chr8	-	209	1	Intergenic	novelGene_356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGGTCTTATTTTTTAA	NA	False	NA	-17	True	NA	NA	NA	112595976	112595767	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_-_112595800_112596000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092942	chr8	-	2067	14	FSM	ENSMUSG00000031948.15	ENSMUST00000034426.14	2008	14	-55	-4	-55	4	multi-exon	FALSE	canonical	3	1149	junction_10	189.523538373557	838	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTGTTACTTTTTCTCC	NA	False	NA	0	True	AATAAA	-20	NA	112738010	112720070	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092965	chr8	+	3523	3	FSM	ENSMUSG00000033430.11	ENSMUST00000052138.11	3560	3	-31	68	-31	-68	multi-exon	FALSE	canonical	3	135	junction_1	1.5	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTGTTTTTGTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112737998	112747092	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_112738775_112741968_112742094_112744470
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092982	chr8	+	1137	8	ISM	ENSMUSG00000004637.16	ENSMUST00000160862.8	1715	9	-4	6428	-4	5927	5prime_fragment	FALSE	canonical	3	58	junction_7	25.2303671905787	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTGTGCGGCTTCTGGA	NA	False	NA	NA	False	NA	NA	NA	115166430	115438991	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092990	chr8	-	2295	7	NNC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	59780	-13	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_6	23.3571307218065	271	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAGAACATGACTTACTA	NA	False	NA	52	True	NA	NA	NA	117399950	117301151	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117399859
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092991	chr8	-	2764	7	FSM	ENSMUSG00000031758.11	ENSMUST00000109102.4	2411	7	-366	13	-366	-13	multi-exon	FALSE	canonical	3	57	junction_6	26.9670580935745	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAGAACATGACTTACTA	1403	False	NA	52	True	NA	NA	NA	117460096	117301151	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117459536
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000092994	chr8	-	2426	8	NNC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	59809	-13	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	56.0444430058568	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAGAACATGACTTACTA	NA	False	NA	52	True	NA	NA	NA	117399921	117301151	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117380271_117380432_117399859
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093021	chr8	+	1803	12	FSM	ENSMUSG00000031756.6	ENSMUST00000034205.5	1768	12	-33	-2	-23	2	multi-exon	FALSE	canonical	3	221	junction_1	41.3065540194129	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAGTTCCTTTGGATGAA	NA	False	NA	10	True	AATAAA	-18	NA	117648445	117668244	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093033	chr8	+	4882	4	FSM	ENSMUSG00000047388.11	ENSMUST00000109099.4	4877	4	-4	-1	-4	1	multi-exon	FALSE	canonical	3	272	junction_2	31.5066130624456	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGTGTGAATCTTGTC	NA	False	NA	25	True	ATTAAA	-19	NA	117670127	117687185	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_117670490_117679612_117679739_117681452_117681653_117682991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093040	chr8	-	1140	4	NIC	ENSMUSG00000034424.6	novel	1443	5	NA	NA	61	-162	combination_of_known_splicesites	FALSE	canonical	3	83	junction_3	974.020647739165	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTGTGATTTTTATTT	NA	False	NA	-9	True	AATAAA	-16	NA	117720215	117708710	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_-_117709466_117710546_117710679_117714051_117714116_117720026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093049	chr8	+	2828	11	FSM	ENSMUSG00000052557.12	ENSMUST00000064488.11	2652	11	-154	-22	-154	22	multi-exon	TRUE	canonical	3	16	junction_7	6.18465843842649	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAACTGTCTAGGGATCAA	NA	False	NA	NA	False	NA	NA	NA	117884719	117931947	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_117885041_117910239_117910355_117913885_117914237_117917010_117917229_117917402_117917525_117919978_117920092_117920851_117921002_117922504_117922642_117923190_117923320_117930688_117930799_117930885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093092	chr8	-	4313	24	NNC	ENSMUSG00000031835.17	novel	4336	24	NA	NA	-13	5	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_23	138.535194084391	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCATGTGTCGTGCCCC	8128	False	NA	-2	True	AATAAA	-19	NA	120285487	120234889	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120276296_120276397_120285384
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093107	chr8	-	3175	5	FSM	ENSMUSG00000034189.6	ENSMUST00000036049.6	3141	5	-23	-11	-23	11	multi-exon	TRUE	canonical	3	107	junction_4	18.9274932307477	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGAGGGTCTTTTTCTTTC	NA	False	NA	1	True	AATAAA	-30	NA	120301945	120288716	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_120290877_120292382_120292611_120292767_120293214_120294504_120294731_120301830
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093125	chr8	+	2182	9	NIC	ENSMUSG00000024266.9	novel	1926	10	NA	NA	-22	2	intron_retention	FALSE	canonical	3	28	junction_5	5.50993421013355	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGCGTGTTGGGATG	4259	False	NA	9	True	AATAAA	-14	NA	120339463	120343665	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120343269_120343352
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093137	chr8	+	2495	21	NNC	ENSMUSG00000034112.10	novel	3222	27	NA	NA	33707	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	2.80133896556629	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCTCTCTCTCTGCTTG	NA	False	NA	NA	False	ATTAAA	-23	NA	120460515	120484457	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_120460562_120461026_120461177_120461248_120461318_120461965_120462042_120465132_120465200_120469068_120469194_120469331_120469430_120471056_120471159_120472252_120472343_120474352_120474455_120474893_120475051_120475762_120475934_120476511_120476610_120476699_120476751_120477898_120478066_120479526_120479596_120479682_120479800_120480940_120481089_120482276_120482376_120482713_120482856_120484106
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093148	chr8	-	1659	4	FSM	ENSMUSG00000031827.14	ENSMUST00000034285.14	1596	4	-55	-8	-55	8	multi-exon	FALSE	canonical	3	203	junction_1	12.9185482500507	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGGTTGTCTGCTTCGTG	NA	False	NA	NA	False	AGTAAA	-22	NA	120567338	120535952	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_120537095_120549392_120549551_120566880_120566964_120567062
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093165	chr8	+	3298	14	FSM	ENSMUSG00000031826.21	ENSMUST00000144458.8	3726	14	433	-5	-21	0	multi-exon	FALSE	canonical	3	816	junction_3	215.032734538435	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8806	False	NA	39	True	AATAAA	-21	NA	120637531	120684299	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093169	chr8	+	3294	14	FSM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	-16	-4	-16	4	multi-exon	FALSE	canonical	3	740	junction_3	231.479471146212	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGGTGTGCTCAGC	8811	False	NA	43	True	AATAAA	-25	NA	120637536	120684303	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093175	chr8	+	3289	14	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	435.472836943909	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8816	False	NA	39	True	AATAAA	-21	NA	120637541	120684299	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678842_120679918_120680085_120681527_120681673_120682936_120683003_120683321
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093183	chr8	+	3221	13	NIC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	52	junction_2	404.702050896706	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8822	False	NA	39	True	AATAAA	-21	NA	120637547	120684299	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_120637679_120658587_120658657_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093200	chr8	+	3269	14	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	431.906328875923	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8842	False	NA	39	True	AATAAA	-21	NA	120637567	120684299	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675529_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093281	chr8	+	2848	9	FSM	ENSMUSG00000041515.11	ENSMUST00000047737.10	2847	9	-1	0	-1	0	multi-exon	TRUE	canonical	3	23	junction_1	7.56637297521078	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAATGTTTGTTTCTTTTTT	NA	False	NA	18	True	ATTAAA	-22	NA	121463095	121483433	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_121463149_121466555_121466731_121470444_121470629_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093315	chr8	-	2060	12	FSM	ENSMUSG00000040263.17	ENSMUST00000045884.17	2078	12	1	17	1	3	multi-exon	FALSE	canonical	3	124	junction_5	29.2453287927892	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTCTTTCTTCTACAGA	437	False	NA	-22	True	AATAAA	-20	NA	122556307	122523068	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122546860_122546960_122548018_122548098_122548520_122548613_122556120
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093331	chr8	-	3508	10	NNC	ENSMUSG00000040010.11	novel	3517	10	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	739.425870039689	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGACTGTGTTCTGTG	NA	False	NA	NA	False	TTTAAA	-18	NA	122634427	122607888	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_122609835_122610329_122610508_122611721_122611872_122612647_122612745_122613018_122613123_122613599_122613721_122614235_122614281_122615060_122615167_122623166_122623305_122633804
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093356	chr8	+	1999	13	FSM	ENSMUSG00000025316.17	ENSMUST00000093078.13	2289	13	73	217	-10	2	multi-exon	FALSE	canonical	3	61	junction_4	55.5245191084283	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCCAACCAACCAACCAAC	NA	False	NA	NA	False	NA	NA	NA	122677303	122752699	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093359	chr8	+	2334	14	NIC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	-10	1	combination_of_known_junctions	FALSE	canonical	3	94	junction_9	50.3807984461442	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGCTCAGTGTTGTTGC	NA	False	NA	8	True	AATAAA	-16	NA	122677303	122752917	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093367	chr8	+	240	1	Intergenic	novelGene_357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATTTTTAGTAGTGTA	NA	False	NA	NA	False	AATAAA	-9	NA	122732856	122733096	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_122732900_122733100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093373	chr8	+	3720	18	FSM	ENSMUSG00000017478.16	ENSMUST00000093073.12	3705	18	-15	0	-15	0	multi-exon	FALSE	canonical	3	173	junction_3	41.8252254144417	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGGTCCTGGTAATGT	924	False	NA	15	True	AATAAA	-16	NA	123103366	123144099	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_123103540_123110138_123110744_123113600_123113686_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093375	chr8	+	3792	19	FSM	ENSMUSG00000017478.16	ENSMUST00000017622.12	3810	19	19	-1	-15	0	multi-exon	FALSE	canonical	3	64	junction_3	72.8266375428831	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGGTCCTGGTAATGT	924	False	NA	15	True	AATAAA	-16	NA	123103366	123144099	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_123103540_123110138_123110744_123113600_123113686_123114431_123114504_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093384	chr8	-	807	6	FSM	ENSMUSG00000006519.12	ENSMUST00000017604.10	744	6	-51	-12	-51	12	multi-exon	FALSE	canonical	3	631	junction_1	96.6531944635044	263	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCATATGAGGCTGGGG	NA	False	NA	NA	False	AATAAA	-30	NA	123159720	123151502	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_123151827_123152924_123153007_123153674_123153759_123153967_123154043_123154393_123154464_123159548
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093415	chr8	+	1618	15	FSM	ENSMUSG00000049482.17	ENSMUST00000151855.8	3999	15	-10	2391	-10	3	multi-exon	FALSE	canonical	3	8	junction_11	35.9174222974004	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTACAGTACTTGTGGGAA	8918	False	NA	17	True	AATAAA	-19	NA	123202937	123208486	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207871_123207964_123208069_123208137_123208209_123208269_123208334
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093428	chr8	+	2250	10	FSM	ENSMUSG00000006585.4	ENSMUST00000006760.3	2189	10	-38	-23	-38	23	multi-exon	FALSE	canonical	3	858	junction_2	66.8792905627208	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTAAATGCTGTTGTG	2548	False	NA	50	True	AATAAA	-38	NA	123294715	123299890	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123296841_123296932_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093470	chr8	+	2245	10	FSM	ENSMUSG00000015016.9	ENSMUST00000212790.2	2171	10	-73	-1	0	1	multi-exon	FALSE	canonical	3	16	junction_1	7.64489662745314	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGACCTGTGAGCTGTGA	9534	False	NA	14	True	AATAAA	-26	NA	123502243	123544620	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_123502368_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093497	chr8	+	2568	17	NNC	ENSMUSG00000000738.19	novel	2896	17	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	61.7469318569757	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCTCTCCATGTGTAT	NA	False	NA	15	True	AGTAAA	-15	NA	123792237	123824494	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_+_123792449_123793211_123793315_123797114_123797205_123800490_123800730_123803589_123803730_123804556_123804660_123806152_123806279_123806707_123806871_123807375_123807550_123814066_123814192_123815683_123815787_123816862_123816974_123818373_123818490_123820329_123820487_123821212_123821380_123821896_123821975_123824132
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093523	chr8	+	2831	1	FSM	ENSMUSG00000064450.3	ENSMUST00000082516.3	86	1	-624	-2121	-624	2121	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829152	123831983	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_123829200_123832000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093524	chr8	+	898	5	NIC	ENSMUSG00000000740.13	novel	780	6	NA	NA	89	0	intron_retention	FALSE	canonical	3	17818	junction_4	2909.59597710747	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829177	123831983	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_+_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093544	chr8	-	2140	6	NNC	ENSMUSG00000000743.10	novel	2140	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	190.847163982072	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTCAGACTTTTTTTTTT	9745	False	NA	-4	True	AATAAA	-16	NA	123939499	123931002	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123935858_123939404
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093545	chr8	-	2173	6	NNC	ENSMUSG00000000743.10	novel	2140	7	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	190.847163982072	119	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTCAGACTTTTTTTTTT	9717	False	NA	-4	True	AATAAA	-16	NA	123939527	123931002	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123939379
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093558	chr8	+	1656	13	FSM	ENSMUSG00000033862.8	ENSMUST00000036880.8	1642	13	-6	-8	-6	8	multi-exon	FALSE	canonical	3	205	junction_10	22.2279853638006	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGCAATCCTTTAATGT	2119	False	NA	18	True	GATAAA	-19	NA	123951574	123958997	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093579	chr8	-	4483	43	FSM	ENSMUSG00000032815.17	ENSMUST00000035495.15	4485	43	2	0	2	0	multi-exon	TRUE	canonical	3	94	junction_17	20.5305065860605	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCTGGCCTTATTGT	NA	False	NA	-4	True	AAGAAA	-17	NA	124045313	123995038	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_123995289_123995483_123995577_123995681_123995818_123996028_123996102_123996598_123996705_123996970_123997034_123997943_123998080_123999058_123999172_124000886_124000992_124001075_124001136_124001206_124001313_124001870_124002044_124004998_124005084_124007930_124008060_124009356_124009431_124010747_124010925_124013208_124013291_124014799_124014991_124015124_124015222_124015462_124015534_124016099_124016237_124016537_124016652_124018135_124018213_124021744_124021795_124021870_124021932_124023032_124023122_124024505_124024566_124024648_124024745_124026748_124026860_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039759_124039856_124039978_124040113_124043101_124043196_124044800_124044911_124045213
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093586	chr8	+	201	1	Intergenic	novelGene_358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAGATGTAGCTCATACA	542	False	NA	NA	False	NA	NA	NA	124048153	124048354	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_124048200_124048400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093608	chr8	+	2679	18	FSM	ENSMUSG00000001472.18	ENSMUST00000212571.2	2649	18	-21	-9	-21	5	multi-exon	TRUE	canonical	3	129	junction_17	98.3685253625717	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGATATGGCCTTTTT	NA	False	NA	17	True	AAGAAA	-22	NA	124100470	124130554	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129888
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093638	chr8	+	3127	12	FSM	ENSMUSG00000001482.16	ENSMUST00000065534.10	3127	12	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	53.2429330273546	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124169724	124190009	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_124169791_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093657	chr8	+	3061	17	FSM	ENSMUSG00000031967.16	ENSMUST00000001520.13	4227	17	-36	1202	-36	1099	multi-exon	FALSE	canonical	3	631	junction_4	44.0414843499853	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGAAGCTGCTCAGCCCT	7459	False	NA	NA	False	NA	NA	NA	124204605	124229453	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493_124216765_124219279_124219418_124219613_124219768_124220566_124220675_124221544_124221671_124225326_124225438_124226730_124226847_124227971_124228173_124228253_124228449_124228586
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093701	chr8	+	201	1	Intergenic	novelGene_359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGCCGGGCGTGGTTGCA	NA	False	NA	NA	False	NA	NA	NA	124700682	124700883	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_+_124700700_124700900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093709	chr8	-	2999	5	NNC	ENSMUSG00000038697.16	novel	2912	5	NA	NA	-82	8	at_least_one_novel_splicesite	FALSE	canonical	1	31	junction_1	242.411839644849	86	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGCATCTTATTTATA	4012	False	NA	44	True	ATTAAA	-23	NA	124747829	124723048	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr8_-_124724843_124729715_124730441_124734929_124735035_124736427_124736573_124747599
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093719	chr8	-	3004	5	FSM	ENSMUSG00000038697.16	ENSMUST00000093039.6	2912	5	-84	-8	-84	8	multi-exon	FALSE	canonical	3	323	junction_4	121.207208944023	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGCATCTTATTTATA	4010	False	NA	44	True	ATTAAA	-23	NA	124747831	124723048	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747599
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093754	chr8	+	2809	18	FSM	ENSMUSG00000031979.18	ENSMUST00000034460.11	2825	18	17	-1	17	1	multi-exon	FALSE	canonical	3	176	junction_7	26.4246660485719	307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAGTTATGTATCCAGT	NA	False	NA	30	True	AATAAA	-20	NA	125247522	125278748	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_125247691_125252369_125252532_125253838_125253905_125255714_125255796_125256636_125256741_125259167_125259277_125259952_125260133_125262137_125262263_125264521_125264649_125267711_125267852_125269627_125269690_125270748_125270901_125271867_125272042_125272758_125272832_125273289_125273433_125275255_125275396_125276905_125277090_125278129
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093778	chr8	-	2944	19	NIC	ENSMUSG00000037300.20	novel	3148	21	NA	NA	-15	6	combination_of_known_junctions	FALSE	canonical	3	125	junction_15	88.9418592170619	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGGTCGTTTTGCTA	NA	False	NA	-2	True	ATTAAA	-22	NA	125448737	125398064	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093786	chr8	-	3320	23	NIC	ENSMUSG00000037300.20	novel	3301	23	NA	NA	-5	5	combination_of_known_junctions	FALSE	canonical	3	143	junction_17	103.32721034023	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTTGGTCGTTTTGCT	NA	False	NA	-3	True	ATTAAA	-21	NA	125448727	125398065	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125424732_125424826_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093795	chr8	-	3152	21	NIC	ENSMUSG00000037300.20	novel	3148	21	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	107	junction_6	93.2745410066434	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCAGTTTGGTCGTTTTGC	NA	False	NA	-4	True	ATTAAA	-20	NA	125448722	125398066	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093819	chr8	+	2996	5	ISM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	21	13	1	-13	intron_retention	FALSE	canonical	3	83	junction_2	14.0890028036054	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCAGTTCAGTAACTAAG	NA	False	NA	8	True	AATAAA	-17	NA	125448898	125460849	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093904	chr8	+	2234	3	FSM	ENSMUSG00000033998.10	ENSMUST00000046765.10	2235	3	1	0	1	0	multi-exon	FALSE	canonical	3	118	junction_2	9	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGGTTTATTACAACT	NA	False	NA	21	True	AATAAA	-18	NA	126721909	126757424	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_+_126722554_126751750_126752147_126756230
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093916	chr8	-	1512	5	FSM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	-84	3474	-80	845	multi-exon	FALSE	canonical	3	5050	junction_1	881.47603484156	643	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGTCAGTTGCTACT	NA	False	NA	-20	True	ATTAAA	-19	NA	127672674	127660890	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093942	chr8	-	458	2	Intergenic	novelGene_360	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	282	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTTAGCTCCGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	129480221	129473043	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr8_-_129473263_129479982
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093947	chr9	+	2665	12	NNC	ENSMUSG00000025899.15	novel	7674	12	NA	NA	-2	-36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	21.1745988477618	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATCTGAAGTTTTATC	-10	True	NA	NA	False	AAGAAA	-9	NA	3335475	3386139	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_3335595_3338455_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369919_3382693_3382844_3385041
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093961	chr9	-	2008	5	ISM	ENSMUSG00000025894.12	ENSMUST00000051589.9	2843	6	5	1164	5	-992	intron_retention	FALSE	canonical	3	643	junction_4	110.637640520756	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTCGTCTTAGGGTTTC	6	True	NA	43	True	AGTAAA	-22	NA	4309462	4295956	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093981	chr9	+	1270	8	FSM	ENSMUSG00000032002.11	ENSMUST00000215683.2	2421	8	-6	1157	-6	8	multi-exon	FALSE	canonical	3	895	junction_7	57.310824564343	373	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTGAGTGTCAGAGTGGTA	NA	False	NA	32	True	AATAAA	-40	NA	7184513	7207048	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_7184883_7186767_7186860_7188745_7188817_7189161_7189254_7203262_7203372_7203450_7203556_7205297_7205401_7206719
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093990	chr9	+	675	1	FSM	ENSMUSG00000074516.7	ENSMUST00000213318.2	480	1	-53	-142	-53	142	mono-exon	FALSE	NA	NA	NA	NA	NA	1046	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCCAGTCTCAGTGAAG	-3	True	NA	NA	False	AATAAA	-39	NA	7751672	7752347	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_7751700_7752300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000093994	chr9	+	2856	5	FSM	ENSMUSG00000050912.16	ENSMUST00000052865.16	2907	5	51	0	51	0	multi-exon	FALSE	canonical	3	248	junction_1	14.5086181285469	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTAGTGTTTTGTTGAA	-25	True	NA	16	True	AATAAA	-19	NA	7764092	7794334	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_7764314_7768290_7768342_7790842_7791110_7791311_7791466_7792171
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094007	chr9	-	4219	9	NNC	ENSMUSG00000053110.14	novel	4171	9	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	84.1145052889215	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCAACTTTTTTACATT	-2	True	NA	-6	True	AATAAA	-22	NA	8004641	7931999	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_7934734_7936511_7936629_7938408_7938540_7950492_7950541_7952953_7953136_7962289_7962404_7973796_7973913_8001457_8001709_8004115
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094028	chr9	+	3097	16	FSM	ENSMUSG00000031918.17	ENSMUST00000155679.8	3088	16	-9	0	-9	0	multi-exon	FALSE	canonical	3	129	junction_2	100.813138473559	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGTCCACAGTTGTCTA	NA	False	NA	27	True	ATTAAA	-16	NA	13660467	13717777	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_13660697_13671713_13671785_13693572_13693679_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094029	chr9	+	3201	17	NIC	ENSMUSG00000031918.17	novel	3106	16	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	121	junction_4	125.44469336624	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGTCCACAGTTGTCT	NA	False	NA	26	True	ATTAAA	-15	NA	13660467	13717776	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_13660697_13671713_13671785_13693572_13693679_13694901_13695007_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094072	chr9	-	2241	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216037.2	1037	3	0	-1204	0	2	multi-exon	FALSE	canonical	3	83	junction_2	53	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCAGTGTTTGTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	14695822	14691080	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_14692908_14693910_14694259_14695756
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094074	chr9	-	1812	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216372.2	2679	3	305	562	-1	29	multi-exon	FALSE	canonical	3	72	junction_2	58.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTCATAGTATGGATAGTA	NA	False	NA	NA	False	NA	NA	NA	14695847	14691475	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_14692908_14693910_14694259_14695815
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094116	chr9	+	1221	12	FSM	ENSMUSG00000031939.17	ENSMUST00000213763.2	1216	12	0	-5	0	-1	multi-exon	FALSE	canonical	3	217	junction_9	145.029663537447	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTTTATAGTTTGTAT	9118	False	NA	4	True	NA	NA	NA	15217555	15228271	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094137	chr9	+	1216	1	FSM	ENSMUSG00000090602.4	ENSMUST00000164523.4	852	1	-42	-322	-42	322	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGGAAAAGGACATCTGAA	NA	False	NA	4	True	AATAAA	-33	NA	16941298	16942514	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_16941300_16942500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094161	chr9	-	2077	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086458.10	2056	3	-18	-3	-18	0	multi-exon	FALSE	canonical	3	47	junction_2	23	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTTGCACTTATTTAAC	NA	False	NA	-1	True	ATTAAA	-21	NA	20556081	20549081	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_20550495_20553319_20553393_20555490
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094163	chr9	-	1974	2	NIC	ENSMUSG00000066892.15	novel	4182	2	NA	NA	0	0	intron_retention	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTTGCACTTATTTAAC	NA	False	NA	-1	True	ATTAAA	-21	NA	20556051	20549081	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_20550495_20555490
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094201	chr9	-	2284	28	ISM	ENSMUSG00000004098.8	ENSMUST00000145974.2	3927	42	8	11162	8	-11162	5prime_fragment	TRUE	canonical	1	1	junction_23	3.76832513836353	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGAAAGGGTGAGGAGGAA	1611	False	NA	NA	False	NA	NA	NA	20726355	20705251	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_-_20705288_20706952_20707007_20707105_20707151_20707245_20707300_20708517_20708563_20708678_20708733_20708869_20708915_20709713_20709768_20709884_20709930_20710331_20710386_20710555_20710610_20710704_20710759_20711538_20711593_20712363_20712418_20712511_20712569_20713062_20713147_20713239_20713315_20713753_20713817_20714302_20714345_20714415_20714464_20715932_20716074_20716165_20716280_20718900_20719051_20719655_20719761_20720735_20720893_20720960_20721151_20721235_20721398_20726161
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094235	chr9	-	5268	39	FSM	ENSMUSG00000004099.17	ENSMUST00000004202.17	5367	39	103	-4	-31	4	multi-exon	TRUE	canonical	3	422	junction_35	116.269340570878	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGTGATTGAGTTCTCTG	NA	False	NA	-3	True	AATAAA	-21	NA	20864172	20818500	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851851_20852668_20852880_20852994_20853103_20853878_20853916_20864003
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094256	chr9	-	2816	2	FSM	ENSMUSG00000043895.7	ENSMUST00000054197.7	6394	2	-12	3590	-12	2298	multi-exon	FALSE	canonical	3	250	junction_1	0	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGGTTATGTGTGTGT	8082	False	NA	0	True	AATAAA	-20	NA	20888089	20877246	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_20879867_20887893
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094276	chr9	+	1198	8	NIC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	-13	0	intron_retention	FALSE	canonical	3	832	junction_5	84.7158515875517	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	18	True	AATAAA	-18	NA	20914197	20920127	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919196_20919789
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094285	chr9	+	2367	5	FSM	ENSMUSG00000003299.11	ENSMUST00000213977.2	2317	5	-52	2	-11	-2	multi-exon	FALSE	canonical	3	966	junction_4	55.0244263941025	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTGAAAATGAGCTGGTC	NA	False	NA	16	True	AATAAA	-16	NA	20914199	20920125	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094293	chr9	+	2537	7	FSM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	-4	2	-4	-2	multi-exon	FALSE	canonical	3	355	junction_3	34.8456915876586	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGTGAGTTTGTGTAC	NA	False	NA	14	True	AATAAA	-19	NA	20927276	20940111	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094294	chr9	+	2534	7	NNC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	-4	-3	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_6	146.235445619575	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTGTGAGTTTGTGTA	NA	False	NA	13	True	AATAAA	-18	NA	20927276	20940110	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938975_20939066
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094324	chr9	-	3461	13	FSM	ENSMUSG00000010205.12	ENSMUST00000115487.3	3470	13	9	0	9	0	multi-exon	FALSE	canonical	3	416	junction_7	41.8140725912541	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGAGCTGGCTGGTTCTTG	NA	False	NA	-2	True	ATTAAA	-31	NA	21003295	20985453	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_20986793_20986880_20986965_20987259_20987404_20987862_20987938_20990504_20990811_20990896_20991109_20991379_20991468_20992000_20992114_20992270_20992401_20992479_20992672_20997540_20998011_21001545_21001613_21003054
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094337	chr9	-	1955	8	ISM	ENSMUSG00000032175.12	ENSMUST00000214454.2	4770	25	2531	15764	-1366	3625	internal_fragment	FALSE	canonical	3	64	junction_4	17.9193203223874	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTATTTATTTATT	NA	False	NA	NA	False	ATTAAA	-22	NA	21040008	21031129	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_-_21031714_21031798_21032000_21032687_21033055_21035272_21035437_21035706_21035855_21036159_21036278_21038419_21038640_21039855
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094354	chr9	+	2761	15	NIC	ENSMUSG00000032177.18	novel	3594	14	NA	NA	-29	14	combination_of_known_junctions	FALSE	canonical	3	11	junction_11	5.62429133857986	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCTGTAGATGCTCTCCC	1135	False	NA	NA	False	NA	NA	NA	21092882	21122937	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_21093117_21102622_21102815_21103690_21103728_21103815_21103887_21105870_21105921_21106041_21106155_21109888_21109983_21112516_21112714_21114493_21114593_21114683_21114849_21115619_21115720_21116265_21116421_21116586_21116710_21117440_21117624_21121989
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094373	chr9	-	3078	5	FSM	ENSMUSG00000003308.16	ENSMUST00000164812.8	3614	5	-7	543	-7	23	multi-exon	FALSE	canonical	3	121	junction_3	9.14808723176599	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCATAAACAGAAAACACAGG	NA	False	NA	NA	False	AAAAAG	-12	NA	21150116	21141905	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094415	chr9	-	1596	10	ISM	ENSMUSG00000003309.15	ENSMUST00000003397.9	1706	11	2523	1	2523	-1	3prime_fragment	FALSE	canonical	3	12	junction_6	5.45916377623922	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGTGAGTGTGCTTCTT	3868	False	NA	-5	True	ATTAAA	-11	NA	21221084	21206757	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_-_21207151_21207728_21207805_21209495_21209622_21210574_21210734_21213751_21213824_21213918_21214062_21216577_21216705_21216788_21217068_21220662_21220731_21220931
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094436	chr9	+	3621	21	NIC	ENSMUSG00000032178.15	novel	3513	21	NA	NA	-30	2	combination_of_known_junctions	FALSE	canonical	3	965	junction_19	396.045376188133	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTCTCAGGCCTGGGT	NA	False	NA	118	True	AATAAA	-16	NA	21279136	21316659	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094444	chr9	+	3549	20	FSM	ENSMUSG00000032178.15	ENSMUST00000067646.12	3549	20	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_18	395.630525194118	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCCTGTCTCAGGCCTG	NA	False	NA	115	True	AATAAA	-13	NA	21279166	21316656	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094465	chr9	+	1347	10	FSM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	-25	-6	-25	6	multi-exon	FALSE	canonical	3	687	junction_5	65.5845510263914	547	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTGTCTGTCTTCTTC	2344	False	NA	48	True	TATAAA	-34	NA	21323107	21331576	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094489	chr9	+	3048	21	NIC	ENSMUSG00000033335.18	novel	3510	21	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	2	156	junction_20	136.611712528612	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCAGATGTGTCTCCTT	5862	False	NA	20	True	AATAAA	-21	NA	21336223	21419055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21418718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094490	chr9	+	3509	20	NIC	ENSMUSG00000033335.18	novel	3502	21	NA	NA	-4	2	combination_of_known_junctions	FALSE	canonical	2	224	junction_13	132.11218266634	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGTGGGCCTTTTGTGT	5862	False	NA	22	True	AATAAA	-32	NA	21336223	21418438	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094495	chr9	+	3037	20	NIC	ENSMUSG00000033335.18	novel	3510	21	NA	NA	-4	1	combination_of_known_junctions	FALSE	canonical	2	156	junction_19	153.943760641486	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCAGATGTGTCTCCTTC	5862	False	NA	21	True	AATAAA	-22	NA	21336223	21419056	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21418718
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094497	chr9	+	3515	21	FSM	ENSMUSG00000033335.18	ENSMUST00000173397.8	3510	21	-4	-1	-4	1	multi-exon	TRUE	canonical	2	185	junction_20	132.122244531343	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACGTGTGTGGGCCTTTTG	5862	False	NA	19	True	AATAAA	-29	NA	21336223	21418435	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417631
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094534	chr9	+	3211	16	FSM	ENSMUSG00000032185.16	ENSMUST00000034703.15	3220	16	9	0	9	0	multi-exon	FALSE	canonical	3	1025	junction_5	67.5234938537856	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGCAAAACAGCAGGGTA	NA	False	NA	20	True	AATAAA	-22	NA	21458198	21500763	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_21458527_21480750_21480877_21485782_21485890_21486709_21486815_21490694_21490806_21491604_21491783_21494334_21494426_21494806_21494889_21497462_21497549_21497740_21497831_21498196_21498335_21498420_21498511_21498586_21498700_21498803_21498882_21499146_21499216_21499344
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094547	chr9	-	2038	9	ISM	ENSMUSG00000032182.16	ENSMUST00000078572.9	1894	10	4	0	4	0	intron_retention	FALSE	canonical	3	66	junction_4	11.9032558571174	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6128	False	NA	-16	True	AATAAA	-17	NA	21504064	21499977	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094600	chr9	-	5054	12	NNC	ENSMUSG00000032194.10	novel	5040	12	NA	NA	-6	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	126.069113932015	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCGTGTCTGTTTGTTCT	NA	False	NA	-8	True	AATAAA	-19	NA	21710046	21678075	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_21680301_21681049_21681140_21681221_21681423_21684040_21684184_21685828_21686049_21686996_21687085_21690996_21691234_21691674_21691766_21691855_21692000_21705752_21706980_21707375_21707491_21709773
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094625	chr9	-	1875	15	FSM	ENSMUSG00000032198.10	ENSMUST00000213296.2	1868	15	-6	-1	-4	1	multi-exon	FALSE	canonical	3	13	junction_1	50.5494807094989	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATTGCCTCTGTTCTCTT	6269	False	NA	-5	True	NA	NA	NA	21763918	21748643	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_21748848_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094633	chr9	-	3100	5	FSM	ENSMUSG00000019066.14	ENSMUST00000115351.10	3835	5	38	697	-15	454	multi-exon	FALSE	canonical	3	21	junction_4	8.45576726264388	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCCTACTGTGGAAACTG	2271	False	NA	NA	False	NA	NA	NA	21829450	21819483	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_21821968_21825940_21826066_21826158_21826278_21827000_21827240_21829317
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094650	chr9	+	1842	2	FSM	ENSMUSG00000051238.7	ENSMUST00000053583.7	1838	2	-2	-2	-2	2	multi-exon	FALSE	canonical	3	72	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGACTCTGGTGGTCTGTG	NA	False	NA	10	True	NA	NA	NA	21867048	21869562	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_21867301_21867972
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094656	chr9	+	2260	18	FSM	ENSMUSG00000003402.15	ENSMUST00000115331.10	1983	18	-271	-6	-11	4	multi-exon	TRUE	canonical	3	290	junction_11	154.653737577573	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTTTTTTAATTTCA	NA	False	NA	24	True	AATAAA	-20	NA	21914090	21925522	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922893_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094660	chr9	+	2225	18	FSM	ENSMUSG00000003402.15	ENSMUST00000003493.9	2012	18	-208	-5	4	5	multi-exon	FALSE	canonical	3	461	junction_11	125.012497645132	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTTTTTTAATTTCAT	NA	False	NA	25	True	AATAAA	-21	NA	21914105	21925523	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094687	chr9	-	2005	7	NNC	ENSMUSG00000003410.9	novel	5014	7	NA	NA	-2	-1547	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1.73205080756888	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAAAGAGGGGAGTGGGC	278	False	NA	NA	False	NA	NA	NA	21963321	21929303	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_21930130_21935969_21936009_21937468_21937695_21937803_21937958_21947607_21947712_21947936_21948157_21962885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094689	chr9	-	2024	7	FSM	ENSMUSG00000003410.9	ENSMUST00000003501.9	5014	7	-13	3003	0	-1547	multi-exon	FALSE	canonical	0	0	junction_1	1.88561808316413	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAAAGAGGGGAGTGGGC	280	False	NA	NA	False	NA	NA	NA	21963319	21929303	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_21930151_21935969_21936009_21937468_21937695_21937803_21937958_21947607_21947712_21947936_21948157_21962885
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094699	chr9	-	1684	9	FSM	ENSMUSG00000066839.13	ENSMUST00000098937.10	1673	9	-11	0	0	0	multi-exon	TRUE	canonical	3	105	junction_8	44.5222907654132	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5885	False	NA	-9	True	AATAAA	-15	NA	21996734	21983541	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996644
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094705	chr9	-	908	3	FSM	ENSMUSG00000013822.8	ENSMUST00000013966.8	888	3	-15	-5	-15	3	multi-exon	FALSE	canonical	3	357	junction_2	52.5	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCTGTACTTCTTGGATA	7929	False	NA	-3	True	AATAAA	-20	NA	22028483	22024281	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_22024976_22025103_22025240_22028405
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094727	chr9	+	609	1	NIC	ENSMUSG00000010607.9	novel	695	2	NA	NA	785	14	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCCTTCATCCAAAGACT	NA	False	NA	25	True	AATAAA	-25	NA	22069026	22069635	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_22069000_22069600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094738	chr9	+	2734	5	FSM	ENSMUSG00000057982.9	ENSMUST00000215618.2	1313	5	-29	-1392	0	740	multi-exon	FALSE	canonical	3	112	junction_4	21.3717102731625	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTAACCATTTCCCTCTC	749	False	NA	NA	False	NA	NA	NA	22137018	22152131	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094843	chr9	-	1961	9	FSM	ENSMUSG00000031990.16	ENSMUST00000034472.16	1942	9	-19	0	6	0	multi-exon	FALSE	canonical	3	88	junction_8	42.8396355610082	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27066708	27008679	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094862	chr9	+	3655	9	FSM	ENSMUSG00000031994.14	ENSMUST00000068135.13	3631	9	-19	-5	-19	5	multi-exon	TRUE	canonical	3	22	junction_2	5.53257399408268	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTAGTCTGGTTCATTA	NA	False	NA	NA	False	ACTAAA	-23	NA	30853838	30874157	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_30854898_30862561_30862802_30863890_30864027_30864651_30864820_30865762_30866068_30867791_30867976_30870209_30870383_30870497_30870674_30872943
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094872	chr9	+	3449	6	FSM	ENSMUSG00000047412.17	ENSMUST00000115222.10	8861	6	-255	5667	-253	-15	multi-exon	FALSE	canonical	3	240	junction_5	55.0694107468021	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGAAGCCACGAGTAAT	NA	False	NA	17	True	ATTAAA	-20	NA	30941686	30981514	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_30942255_30964535_30965610_30973336_30973422_30975474_30975639_30977954_30978039_30980040
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094882	chr9	-	3262	19	FSM	ENSMUSG00000031995.10	ENSMUST00000034478.3	3259	19	-3	0	-3	0	multi-exon	FALSE	canonical	3	531	junction_11	45.3756610671839	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTTCTTGCTATACT	NA	False	NA	0	True	AGTAAA	-24	NA	31043152	31000697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31042841
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094931	chr9	-	3539	16	FSM	ENSMUSG00000031996.18	ENSMUST00000217641.2	3462	16	-74	-3	-46	3	multi-exon	FALSE	canonical	3	473	junction_10	230.67090554872	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTGTTCCTGACCATGG	8669	False	NA	-6	True	AATAAA	-22	NA	31123157	31060849	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094935	chr9	-	3681	17	FSM	ENSMUSG00000031996.18	ENSMUST00000072634.15	3634	17	-46	-1	-22	1	multi-exon	FALSE	canonical	3	712	junction_10	199.562020434751	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTGTGTTCCTGACCAT	8693	False	NA	-8	True	AATAAA	-20	NA	31123133	31060851	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094949	chr9	-	3659	17	NNC	ENSMUSG00000031996.18	novel	3634	17	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	360.028102201759	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCACCTTGTGTTCCTGA	8715	False	NA	-12	True	AATAAA	-16	NA	31123111	31060855	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088309_31088438_31089200_31089375_31122918
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094969	chr9	+	2020	1	FSM	ENSMUSG00000079884.7	ENSMUST00000182663.3	604	1	-89	-1327	-89	1327	mono-exon	FALSE	NA	NA	NA	NA	NA	572	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGACATAGGATTCAATC	NA	False	NA	NA	False	NA	NA	NA	33639453	33641473	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_33639500_33641500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094993	chr9	-	2315	7	FSM	ENSMUSG00000032041.16	ENSMUST00000176685.8	1783	7	60	-592	18	33	multi-exon	FALSE	canonical	3	40	junction_5	13.6065752079239	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAGAAAGCCAGGGTGTG	7995	False	NA	NA	False	NA	NA	NA	35111206	35098047	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110516_35110616_35111152
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000094999	chr9	-	2244	11	FSM	ENSMUSG00000039048.16	ENSMUST00000127996.8	2289	11	46	-1	-8	-1	multi-exon	TRUE	canonical	3	179	junction_9	18.9747200242849	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCTCTTGAGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	35122305	35115502	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095022	chr9	-	1621	8	NNC	ENSMUSG00000050471.18	novel	1860	8	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_2	45.5246064883417	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGCTCTACTTTGAAGA	6389	False	NA	-16	True	ATTAAA	-25	NA	35179076	35128526	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_35129044_35129224_35129282_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35179018
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095032	chr9	+	1823	7	FSM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	-2	0	-2	0	multi-exon	FALSE	canonical	3	136	junction_6	10.6052921799554	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTAATTTTTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	35179158	35187261	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35183924_35183997_35184143_35184763_35184862_35186359
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095075	chr9	-	2242	11	FSM	ENSMUSG00000062762.18	ENSMUST00000238932.2	2220	11	-16	-6	-16	6	multi-exon	TRUE	canonical	3	488	junction_2	34.4551882885582	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATAATGTTTGATTTCTA	NA	False	NA	-2	True	ATTAAA	-23	NA	36708705	36690448	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708508
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095092	chr9	-	3491	13	FSM	ENSMUSG00000035934.17	ENSMUST00000039674.13	3632	13	141	0	0	0	multi-exon	FALSE	canonical	2	8	junction_11	4.65698400254929	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATGCACAGTTCTCTC	NA	False	NA	-5	True	AGTAAA	-19	NA	37058562	36802277	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_36804354_36805615_36805795_36806606_36806684_36820924_36821045_36821807_36821906_36822429_36822560_36834879_36835069_36847616_36847789_36865988_36866129_36879673_36879783_36898463_36898569_36994502_36994573_37058536
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095097	chr9	-	2903	18	FSM	ENSMUSG00000032122.16	ENSMUST00000115068.10	5943	18	312	2728	-12	3	multi-exon	FALSE	canonical	3	62	junction_1	7.12469267230106	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTGGTTCTCACTTTA	NA	False	NA	0	True	AATAAA	-13	NA	37166722	37141608	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_37142953_37144605_37144671_37144915_37145014_37145137_37145217_37145453_37145528_37145688_37145738_37146380_37146467_37146776_37146840_37148174_37148266_37148595_37148749_37149032_37149071_37149511_37149679_37150426_37150504_37150914_37151051_37152387_37152467_37152584_37152679_37153174_37153257_37166594
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095104	chr9	+	455	1	FSM	ENSMUSG00000090136.5	ENSMUST00000160052.2	444	1	-7	-4	-7	4	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGGGCAAGCTCAGTCG	NA	False	NA	NA	False	NA	NA	NA	37164210	37164665	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_37164200_37164700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095124	chr9	+	2701	10	FSM	ENSMUSG00000001942.9	ENSMUST00000215474.2	4947	10	145	2101	-12	567	multi-exon	FALSE	canonical	3	33	junction_7	7.87400787401181	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCGATGCATCCATTTGC	NA	False	NA	NA	False	AAGAAA	-10	NA	37525110	37558850	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_37525223_37528095_37528258_37534194_37534371_37538995_37539135_37542644_37542901_37544253_37544364_37544916_37545051_37553935_37554094_37556047_37556244_37557592
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095138	chr9	-	1212	3	FSM	ENSMUSG00000011114.19	ENSMUST00000126062.2	823	3	-69	-320	0	320	multi-exon	FALSE	canonical	3	1703	junction_2	71.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGGGTGCATTCAATAAAA	NA	False	NA	NA	False	NA	NA	NA	37568533	37564831	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_37565733_37566317_37566389_37568293
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095146	chr9	+	2442	9	FSM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	-46	-2	-46	2	multi-exon	FALSE	canonical	3	3928	junction_3	6050.21958150074	1234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTCCTGACTGAGTTA	2121	False	NA	12	True	AATAAA	-22	NA	40712233	40716498	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095151	chr9	+	2202	8	NIC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	3928	junction_3	6242.18814002832	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACAGTTGTCCTGACTGA	2456	False	NA	8	True	AATAAA	-18	NA	40712568	40716494	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715992_40716227
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095152	chr9	+	2109	9	NNC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	7690.53829390375	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2456	False	NA	10	True	AATAAA	-20	NA	40712568	40716496	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715664_40715758_40715992_40716227
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095225	chr9	+	2174	13	FSM	ENSMUSG00000032010.16	ENSMUST00000034508.14	3867	13	50	1643	-7	-9	multi-exon	FALSE	canonical	3	29	junction_2	11.1654228162962	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAAAATCCTGACAAGT	NA	False	NA	NA	False	NA	NA	NA	43978367	44005281	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_43978518_43986662_43987520_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095233	chr9	-	2737	1	FSM	ENSMUSG00000053128.16	ENSMUST00000056328.6	2724	1	-13	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCCTTGGGAGTGGT	9249	False	NA	NA	False	AATAAA	-20	NA	44024814	44022077	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_44022100_44024800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095267	chr9	+	1387	1	FSM	ENSMUSG00000049932.4	ENSMUST00000052686.4	1384	1	-3	0	-3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTTAATGTTGAATGCT	5250	False	NA	34	True	ATTAAA	-30	NA	44245987	44247374	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_44246000_44247400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095274	chr9	-	1559	14	FSM	ENSMUSG00000032126.17	ENSMUST00000077353.15	1605	14	37	9	37	4	multi-exon	FALSE	canonical	3	699	junction_4	86.0870620274656	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTCTGAGACCTTTCTG	1445	False	NA	0	True	AATAAA	-24	NA	44255488	44247644	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095287	chr9	+	182	1	Intergenic	novelGene_361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAACAGGAGAGGGGGGAAA	NA	False	NA	NA	False	NA	NA	NA	44288885	44289067	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_44288900_44289100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095300	chr9	+	4374	26	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	-3	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	169.771375679176	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTGTATGTGTTTGCTT	NA	False	NA	-2	True	AATAAA	-14	NA	44290839	44303657	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_44290897_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095352	chr9	+	765	6	NNC	ENSMUSG00000009927.10	novel	1280	5	NA	NA	-25	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5001.66505875793	2762	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGCATCTGTTTCCTAA	NA	False	NA	96	True	AATAAA	-21	NA	44318410	44321493	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_44318548_44318856_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095367	chr9	-	1211	11	FSM	ENSMUSG00000043923.9	ENSMUST00000053286.9	1725	11	514	0	-16	0	multi-exon	FALSE	canonical	3	28	junction_6	11.2853887837327	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGATTGAACCTGTAAA	8924	False	NA	0	True	AATAAA	-21	NA	44329352	44321455	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324767_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095376	chr9	+	1385	1	FSM	ENSMUSG00000094437.3	ENSMUST00000178509.3	357	1	-85	-943	-85	943	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACAAAGAAGAGAGATAAGA	NA	False	NA	NA	False	AATAAA	-39	NA	44375454	44376839	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_44375500_44376800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095378	chr9	+	2538	14	NNC	ENSMUSG00000032097.11	novel	6065	14	NA	NA	-252	-3540	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	8.71236623678017	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATACCAAGTAAAATTTTC	NA	False	NA	NA	False	TTTAAA	-9	NA	44515936	44548488	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_44516043_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095385	chr9	+	2513	14	NNC	ENSMUSG00000032097.11	novel	6065	14	NA	NA	-45	-3540	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	7.66070431047592	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATACCAAGTAAAATTTTC	NA	False	NA	NA	False	TTTAAA	-9	NA	44516143	44548488	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_44516225_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095387	chr9	+	2538	14	FSM	ENSMUSG00000032097.11	ENSMUST00000217034.2	6029	14	-49	3540	-45	-3540	multi-exon	FALSE	canonical	3	13	junction_1	7.66070431047592	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATACCAAGTAAAATTTTC	NA	False	NA	NA	False	TTTAAA	-9	NA	44516143	44548488	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_44516250_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095401	chr9	+	2521	14	FSM	ENSMUSG00000032097.11	ENSMUST00000170489.2	6065	14	4	3540	0	-3540	multi-exon	FALSE	canonical	2	6	junction_1	9.15352294193447	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATACCAAGTAAAATTTTC	NA	False	NA	NA	False	TTTAAA	-9	NA	44516192	44548488	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_44516282_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095404	chr9	-	2966	13	ISM	ENSMUSG00000048537.17	ENSMUST00000144251.8	3589	17	4712	0	-101	0	3prime_fragment	FALSE	canonical	3	19	junction_8	6.21601873299051	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGTGTGGAAGTCTGAG	NA	False	NA	0	True	AATAAA	-18	NA	44619825	44597604	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609048_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44619690
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095415	chr9	-	4075	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	-3	0	-3	0	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	398	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTTATCCCTCAAACGG	NA	False	NA	NA	False	NA	NA	NA	44679145	44652860	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095509	chr9	+	1843	14	FSM	ENSMUSG00000032078.18	ENSMUST00000156440.8	2984	14	102	1039	-27	120	multi-exon	FALSE	canonical	3	619	junction_8	51.2505159448701	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGCCTCTGCGTTCATGTC	NA	False	NA	14	True	ATTAAA	-21	NA	46184463	46192902	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_46184666_46184775_46184938_46185353_46185445_46185954_46186026_46186661_46186749_46187028_46187152_46187497_46187546_46187709_46187777_46188089_46188161_46188943_46189034_46189601_46189713_46190966_46191054_46191213_46191280_46192335
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095519	chr9	+	987	6	ISM	ENSMUSG00000032076.21	ENSMUST00000151624.2	1112	7	257596	-6	257596	6	3prime_fragment	FALSE	canonical	3	300	junction_1	18.4780951399218	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGGTCTCCTTCAGGA	1846	False	NA	NA	False	NA	NA	NA	47699266	47725358	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095520	chr9	+	1311	8	ISM	ENSMUSG00000032076.21	ENSMUST00000152459.8	1784	12	257758	20856	257596	-4717	internal_fragment	FALSE	canonical	3	173	junction_7	55.5356109323797	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAAGTGTATTTGTCTAC	1846	False	NA	NA	False	AATAAA	-30	NA	47699266	47741029	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095521	chr9	+	1891	9	ISM	ENSMUSG00000032076.21	ENSMUST00000114547.8	4444	10	257712	2306	257596	45	3prime_fragment	FALSE	canonical	3	143	junction_7	61.313614923604	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGAAAACTCTTTGCTGC	1846	False	NA	NA	False	NA	NA	NA	47699266	47762372	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47759464_47759597_47761569
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095524	chr9	+	1924	10	ISM	ENSMUSG00000032076.21	ENSMUST00000085909.9	2126	11	257712	-45	257596	45	3prime_fragment	FALSE	canonical	3	105	junction_8	78.429019572548	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGAAAACTCTTTGCTGC	1846	False	NA	NA	False	NA	NA	NA	47699266	47762372	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674_47740708_47759464_47759597_47761569
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095540	chr9	+	217	1	Intergenic	novelGene_362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTTCAGGGAAGTGGGAG	NA	False	NA	NA	False	NA	NA	NA	48373509	48373726	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_48373500_48373700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095542	chr9	-	1171	7	FSM	ENSMUSG00000032026.8	ENSMUST00000034524.5	1077	7	-94	0	-82	0	multi-exon	FALSE	canonical	3	1058	junction_4	53.1959167188193	320	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCGGCACCCTCTGCTC	NA	False	NA	-1	True	AATAAA	-26	NA	48392005	48379811	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_48380247_48383119_48383174_48384331_48384441_48385701_48385814_48386419_48386498_48390609_48390694_48391706
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095580	chr9	+	2903	16	FSM	ENSMUSG00000032264.10	ENSMUST00000034803.10	2863	16	-39	-1	-39	1	multi-exon	FALSE	canonical	3	236	junction_12	29.9965923990635	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAGTGTCTTTAATAAC	NA	False	NA	21	True	AGTAAA	-17	NA	48966873	48990073	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354_48972515_48973492_48973646_48975309_48975502_48977978_48978143_48979959_48980143_48980873_48981113_48982881_48982954_48984502_48984673_48985318_48985450_48986204_48986337_48988751_48988955_48989498
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095593	chr9	-	2279	22	FSM	ENSMUSG00000040219.5	ENSMUST00000055096.5	3628	22	48	1301	38	-1301	multi-exon	FALSE	canonical	3	14	junction_3	5.49706167646225	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGATGTCTGCCGGGTTTT	NA	False	NA	0	True	AATAAA	-27	NA	49397477	49349563	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_49349757_49351456_49351683_49353136_49353237_49354401_49354504_49355967_49356037_49356484_49356584_49357041_49357180_49357824_49357886_49359226_49359320_49364623_49364793_49367160_49367250_49368132_49368203_49369295_49369485_49369949_49370011_49371689_49371762_49378071_49378132_49381528_49381651_49382425_49382504_49383161_49383184_49383682_49383844_49395969_49396043_49397445
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095598	chr9	-	4761	13	NNC	ENSMUSG00000039542.17	novel	6564	20	NA	NA	-1354	2307	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	56.871871098305	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATCCGTTGGTGCTTTCA	9144	False	NA	NA	False	AATAAA	-19	NA	49481203	49440268	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_49443277_49454310_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481121
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095609	chr9	-	1051	6	FSM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	-5	0	0	0	multi-exon	FALSE	canonical	3	95	junction_5	16.1294761229248	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7954	False	NA	NA	False	AATAAA	-18	NA	50439956	50432916	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439856
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095610	chr9	-	1138	7	NIC	ENSMUSG00000032067.7	novel	589	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	39.4574313518872	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7954	False	NA	NA	False	AATAAA	-18	NA	50439956	50432916	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439445_50439533_50439856
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095644	chr9	-	217	1	Intergenic	novelGene_363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCTGAAACACTAGTGAGG	NA	False	NA	NA	False	NA	NA	NA	50562527	50562310	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_-_50562300_50562500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095654	chr9	-	895	4	FSM	ENSMUSG00000037971.11	ENSMUST00000042468.9	2082	4	297	890	5	9	multi-exon	TRUE	canonical	3	19	junction_2	3.74165738677394	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTATTTGTTTACTCTAA	NA	False	NA	NA	False	AATAAA	-22	NA	50679455	50675017	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_50675317_50675523_50675591_50675995_50676227_50679157
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095694	chr9	-	2180	14	ISM	ENSMUSG00000053289.9	ENSMUST00000065630.8	3128	18	-59	61286	-59	-61286	5prime_fragment	FALSE	canonical	3	249	junction_4	29.3672925177396	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATTTACTGATGAAGGG	NA	False	NA	NA	False	AAAAAG	-34	NA	53159412	53071220	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_-_53071318_53115358_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095702	chr9	+	3575	8	FSM	ENSMUSG00000034487.5	ENSMUST00000037853.5	3642	8	-27	94	-27	-94	multi-exon	FALSE	canonical	3	69	junction_3	8.89622712968015	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAACTCCATGTACTTTAA	9245	False	NA	NA	False	AATAAA	-22	NA	53295297	53313073	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_53295587_53299679_53299878_53301734_53302022_53303214_53303432_53305235_53305433_53307143_53307339_53309219_53309325_53310986
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095714	chr9	-	2205	12	FSM	ENSMUSG00000032047.6	ENSMUST00000034547.6	3405	12	30	1170	-22	795	multi-exon	FALSE	canonical	3	149	junction_5	11.4912830779187	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAATATGGTTAAG	NA	False	NA	NA	False	AATAAA	-17	NA	53521652	53492991	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_53493966_53494736_53494895_53496139_53496205_53498752_53498867_53500477_53500574_53502606_53502758_53503267_53503412_53505705_53505807_53505993_53506090_53506582_53506701_53509384_53509433_53521512
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095747	chr9	+	1810	12	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	721.870859080821	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATAATGAATGATGTAAT	NA	False	NA	52	True	AATAAA	-19	NA	54493770	54511226	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_54493828_54497141_54497205_54499444_54499547_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095759	chr9	-	1179	11	FSM	ENSMUSG00000061559.16	ENSMUST00000130368.8	1162	11	-15	-2	5	2	multi-exon	FALSE	canonical	3	105	junction_9	343.30050975785	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTGTGAACGTGCTGT	5428	False	NA	-1	True	AATAAA	-21	NA	54641796	54624440	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637941_54638670_54638722_54641758
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095769	chr9	-	227	1	Intergenic	novelGene_364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTCTTTGTGCCAGACA	2316	False	NA	NA	False	AAAAAG	-21	NA	54644908	54644681	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_-_54644700_54644900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095772	chr9	+	803	4	FSM	ENSMUSG00000032291.9	ENSMUST00000034830.9	802	4	0	-1	0	1	multi-exon	FALSE	canonical	3	250	junction_3	35.3679076125361	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGGCTCTTTCTTTGAG	NA	False	NA	19	True	ATTAAA	-15	NA	54672031	54680395	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_54672256_54672766_54672946_54675667_54675782_54680109
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095784	chr9	+	211	1	Intergenic	novelGene_365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACCCTCTGACCTCATCA	NA	False	NA	NA	False	NA	NA	NA	55023984	55024195	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_55024000_55024200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095788	chr9	+	2934	13	FSM	ENSMUSG00000032307.17	ENSMUST00000059555.15	3456	13	522	0	-19	0	multi-exon	TRUE	canonical	3	762	junction_1	63.2035402489449	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCACCTTTCCCTCTT	NA	False	NA	10	True	AATAAA	-18	NA	55056659	55114813	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_55057111_55070251_55070354_55075486_55075592_55083474_55083532_55087756_55087898_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270_55102320_55102707_55102804_55110984_55111052_55113243
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095794	chr9	+	2116	7	NNC	ENSMUSG00000032309.16	novel	2112	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	369.828526331987	491	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	11	True	AATAAA	-18	NA	55116208	55131717	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_55116473_55116636_55116780_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095830	chr9	-	1734	7	FSM	ENSMUSG00000032324.12	ENSMUST00000034876.10	1716	7	-15	-3	-15	3	multi-exon	FALSE	canonical	3	718	junction_1	24.1522945769824	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACATTTTAATTATTTGG	NA	False	NA	0	True	AATAAA	-20	NA	56068356	56043164	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_56044020_56052772_56052857_56053058_56053212_56053797_56053900_56054369_56054445_56054670_56054863_56068083
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095836	chr9	+	2001	9	FSM	ENSMUSG00000032329.5	ENSMUST00000215269.2	1700	9	170	-471	-1	471	multi-exon	FALSE	canonical	3	179	junction_3	23.7276210354093	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGTAGATGGCTCTTGA	NA	False	NA	NA	False	NA	NA	NA	56326097	56398080	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095849	chr9	+	1032	1	FSM	ENSMUSG00000118653.2	ENSMUST00000239472.2	988	1	-30	-14	-30	14	mono-exon	FALSE	NA	NA	NA	NA	NA	2143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATGGTAAACAAGAAAATGT	NA	False	NA	NA	False	AAAAAG	-44	NA	56344710	56345742	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_56344700_56345700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095886	chr9	+	3256	26	FSM	ENSMUSG00000032295.16	ENSMUST00000160147.8	3820	26	55	509	-23	0	multi-exon	FALSE	canonical	2	160	junction_17	33.744593641056	395	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTGCTGTTTCTCA	NA	False	NA	23	True	AATAAA	-24	NA	57038028	57049497	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095936	chr9	-	1437	7	FSM	ENSMUSG00000063849.7	ENSMUST00000085709.6	2744	7	-3	1310	-2	-2	multi-exon	FALSE	canonical	3	27	junction_2	42.49607825043	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGAGACTGTGTCCTTCTT	NA	False	NA	-6	True	AATAAA	-15	NA	57347382	57321245	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_57322010_57322368_57322538_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095956	chr9	-	3227	7	FSM	ENSMUSG00000040722.8	ENSMUST00000046587.8	3225	7	-2	0	0	0	multi-exon	FALSE	canonical	3	67	junction_3	41.0680329859288	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	False	NA	0	True	AATAAA	-20	NA	57375343	57348609	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375215
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095961	chr9	-	3187	6	NIC	ENSMUSG00000040722.8	novel	1025	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_5	39.9669863762581	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	False	NA	0	True	AATAAA	-20	NA	57375343	57348609	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_57351148_57352654_57352773_57353354_57353457_57358638_57358768_57359262_57359318_57375098
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095973	chr9	+	711	1	FSM	ENSMUSG00000074280.7	ENSMUST00000098689.7	409	1	-50	-252	-50	252	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCAGCAATGTTCAATAT	NA	False	NA	NA	False	NA	NA	NA	57391195	57391906	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_57391200_57391900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000095995	chr9	+	2345	9	FSM	ENSMUSG00000040188.11	ENSMUST00000045791.11	2340	9	-2	-3	-2	3	multi-exon	TRUE	canonical	3	243	junction_4	15.3927742788621	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCCCTGATGTCAATGGT	NA	False	NA	16	True	AATAAA	-18	NA	57468223	57496081	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_57468394_57484475_57484545_57484921_57485021_57486715_57486834_57488066_57488196_57488772_57488933_57490134_57490237_57494362_57494484_57494704
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096008	chr9	-	2763	13	FSM	ENSMUSG00000032312.8	ENSMUST00000034863.8	2749	13	-14	0	-14	0	multi-exon	FALSE	canonical	3	100	junction_12	11.433381924095	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCCTCGGCGCTTCCTC	NA	False	NA	-25	True	AATAAA	-23	NA	57552950	57533928	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57552277
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096016	chr9	-	2450	14	NIC	ENSMUSG00000032312.8	novel	2390	15	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_13	43.0998565326625	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCCTCGGCGCTTCCTC	NA	False	NA	-25	True	AATAAA	-23	NA	57560758	57533928	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57559114_57559276_57560559
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096025	chr9	+	215	1	Intergenic	novelGene_366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGTAAAGGTTAGACGC	NA	False	NA	NA	False	NA	NA	NA	57556256	57556471	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_57556300_57556500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096028	chr9	+	3377	7	FSM	ENSMUSG00000038957.14	ENSMUST00000043990.14	5708	7	0	2331	0	-1235	multi-exon	FALSE	canonical	3	211	junction_3	27.6189347288333	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAGAGTGAAGTGCTGCT	NA	False	NA	21	True	AATAAA	-31	NA	57615822	57657451	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_57615983_57620663_57620845_57623230_57623551_57634468_57634805_57647172_57647327_57651867_57652086_57655443
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096105	chr9	-	3876	3	FSM	ENSMUSG00000051243.15	ENSMUST00000114144.9	3880	3	0	4	0	0	multi-exon	FALSE	canonical	2	3	junction_2	4	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGACTCGGTGAGATTTTT	7223	False	NA	-4	True	AATAAA	-15	NA	58111602	58103584	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_58107267_58108562_58108656_58111501
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096131	chr9	-	3081	11	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_1	112.525063874676	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGTCTGTAATTTTGCT	2152	False	NA	-11	True	NA	NA	NA	58157068	58125822	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_58126012_58126793_58126953_58127105_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096145	chr9	-	2235	7	ISM	ENSMUSG00000036986.17	ENSMUST00000114136.9	4343	8	24	3229	24	-255	5prime_fragment	FALSE	canonical	3	178	junction_3	76.1389446268392	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCAGTAATCTACTCTTG	2175	False	NA	NA	False	NA	NA	NA	58157045	58128587	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_-_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096173	chr9	-	240	1	Intergenic	novelGene_367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTATTTTTATAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	58208023	58207783	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_-_58207800_58208000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096176	chr9	+	2689	3	FSM	ENSMUSG00000066607.6	ENSMUST00000085658.5	2139	3	-512	-38	-512	0	multi-exon	FALSE	canonical	0	0	junction_2	8.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCGGGGCCCACAGGCC	NA	False	NA	NA	False	AATAAA	-17	NA	58395373	58407063	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_58396523_58396951_58397676_58406247
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096189	chr9	+	2042	8	FSM	ENSMUSG00000032336.18	ENSMUST00000085651.12	2024	8	-18	0	-18	0	multi-exon	FALSE	canonical	3	310	junction_5	36.1815151813233	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	519	False	NA	NA	False	AATAAA	-16	NA	58489556	58560161	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540_58558616_58559141
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096214	chr9	+	2279	6	NIC	ENSMUSG00000025236.12	novel	2484	7	NA	NA	-4	1	combination_of_known_splicesites	FALSE	canonical	3	80	junction_4	227.97315631451	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGTCTAATTGATTTTG	NA	False	NA	20	True	ATTAAA	-21	NA	59198850	59223484	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59221035_59221135_59222013
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096219	chr9	+	2273	6	NIC	ENSMUSG00000025236.12	novel	2464	7	NA	NA	-1	1	combination_of_known_splicesites	FALSE	canonical	3	80	junction_4	226.796825374607	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGTCTAATTGATTTTG	NA	False	NA	20	True	ATTAAA	-21	NA	59198853	59223484	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59221035_59221135_59222016
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096291	chr9	+	2237	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	-19	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6961.50973640057	136	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTGTGTTTTGTTTTGTT	1850	False	NA	18	True	AATAAA	-18	NA	59563836	59586656	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_59563922_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096293	chr9	+	2244	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	-19	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	7076.10947908524	48	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGTGTTTTGTTTTGT	1850	False	NA	17	True	AATAAA	-17	NA	59563836	59586655	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585329_59585509_59586010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096302	chr9	+	2237	11	NNC	ENSMUSG00000032294.18	novel	2041	11	NA	NA	-8	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	7782.00502762624	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTGTGTTTTGTTTTGTT	1861	False	NA	18	True	AATAAA	-18	NA	59563847	59586656	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582311_59582479_59585326_59585509_59586010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096331	chr9	+	2208	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5360.55493862343	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTTGTGTTTTGTTTT	1872	False	NA	15	True	AATAAA	-15	NA	59563858	59586653	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59578998_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096336	chr9	+	2220	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6955.31559600282	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGTGTTTTGTTTTGT	1872	False	NA	17	True	AATAAA	-17	NA	59563858	59586655	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586015
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096353	chr9	+	2274	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6982.46754378422	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGTGTTTTGTTTTGT	1872	False	NA	17	True	AATAAA	-17	NA	59563858	59586655	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_59563982_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096366	chr9	+	2205	11	Fusion	ENSMUSG00000032294.18_ENSMUSG00000111394.2	novel	625	5	NA	NA	4	-3	multi-exon	FALSE	canonical	0	0	junction_7	6975.60285925166	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGTGTTTTGTTTTGT	2540	False	NA	17	True	AATAAA	-17	NA	59564526	59586655	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Fusion_chr9_+_59564581_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096400	chr9	+	221	1	Intergenic	novelGene_368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGACGAGCGGGATGCTTG	NA	False	NA	NA	False	NA	NA	NA	61781192	61781413	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_61781200_61781400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096406	chr9	-	3416	23	FSM	ENSMUSG00000032254.11	ENSMUST00000034815.9	3398	23	-15	-3	-15	3	multi-exon	FALSE	canonical	3	138	junction_5	42.1913194628531	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	0	True	AATAAA	-21	NA	61854071	61824558	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096410	chr9	-	3095	22	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	-6	3	combination_of_known_junctions	FALSE	canonical	3	131	junction_5	37.7146464629211	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	0	True	AATAAA	-21	NA	61854062	61824558	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096432	chr9	+	204	1	Intergenic	novelGene_369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATTGTTAGTTGAGCA	NA	False	NA	NA	False	NA	NA	NA	62233711	62233915	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_62233700_62233900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096478	chr9	-	4569	14	NIC	ENSMUSG00000032405.11	novel	5564	14	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	23.8180976391468	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCTGTGTTCTGTAAAAT	NA	False	NA	-1	True	AATAAA	-16	NA	62888165	62785650	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_62788546_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096487	chr9	-	2246	14	FSM	ENSMUSG00000032405.11	ENSMUST00000098651.6	5564	14	-18	3336	-14	1176	multi-exon	FALSE	canonical	3	79	junction_1	15.6049605221996	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGCACCCACAAACCTTCA	NA	False	NA	NA	False	GATAAA	-45	NA	62888179	62788985	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_62789544_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096543	chr9	+	1396	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6159.02867722773	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	38	True	AATAAA	-20	NA	64080655	64085801	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_64080720_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096554	chr9	+	275	1	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	4870	147	1110	-147	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	599	False	NA	38	True	AATAAA	-20	NA	64085526	64085801	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_+_64085500_64085800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096585	chr9	+	1138	7	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	40	junction_5	1014.70478739166	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAGGATTTGAGTTTCT	9569	False	NA	16	True	AATAAA	-16	NA	64188888	64212076	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64208323_64208531_64211588
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096588	chr9	+	1139	7	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	0	7	combination_of_known_splicesites	FALSE	canonical	3	80	junction_2	1041.97100887373	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGATTTGAGTTTCTCACCA	9569	False	NA	21	True	AATAAA	-21	NA	64188888	64212081	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_64188935_64195395_64195526_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096608	chr9	+	217	1	Intergenic	novelGene_370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCACAGCTGGGAAGTAT	NA	False	NA	NA	False	AAAAAG	-18	NA	64223919	64224136	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_64223900_64224100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096613	chr9	-	2336	5	FSM	ENSMUSG00000004771.13	ENSMUST00000172298.8	2336	5	-3	3	-3	-3	multi-exon	TRUE	canonical	3	899	junction_3	39.0160223497988	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTGTGGTGAGATTACAT	NA	False	NA	-5	True	AATAAA	-18	NA	64645043	64622583	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64635515_64635712_64644865
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096625	chr9	+	2794	13	FSM	ENSMUSG00000034263.14	ENSMUST00000037504.7	2837	13	-7	50	-7	-50	multi-exon	TRUE	canonical	3	19	junction_1	58.8451357377991	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTTGATCTATCTTA	NA	False	NA	NA	False	ATTAAA	-38	NA	64868211	64893940	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_64868540_64868975_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880093_64880499_64880643_64882898_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096633	chr9	-	2726	11	FSM	ENSMUSG00000033629.7	ENSMUST00000036615.7	2709	11	-17	0	-17	0	multi-exon	FALSE	canonical	3	252	junction_1	24.7620677650313	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTGTGCTTAAACATCA	NA	False	NA	-1	True	ATTAAA	-23	NA	64928992	64894264	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_64895812_64897598_64897731_64898255_64898363_64899538_64899652_64905476_64905605_64908262_64908374_64911538_64911591_64912889_64913055_64913842_64913917_64917755_64917799_64928738
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096635	chr9	-	2725	11	NNC	ENSMUSG00000033629.7	novel	2709	11	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	87.2812121822331	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTGTGCTTAAACATCA	NA	False	NA	-1	True	ATTAAA	-23	NA	64928992	64894264	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_64895812_64897598_64897731_64898255_64898363_64899538_64899652_64905476_64905605_64908262_64908374_64911538_64911591_64912889_64913055_64913842_64913912_64917751_64917799_64928738
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096650	chr9	+	3336	14	FSM	ENSMUSG00000032394.7	ENSMUST00000217371.2	3183	14	-110	-43	-87	43	multi-exon	FALSE	canonical	3	70	junction_11	14.1668000921899	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTAACCCCCAAAAGAACCA	NA	False	NA	NA	False	NA	NA	NA	65048383	65093197	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_65048836_65051537_65051844_65084676_65084822_65085147_65085279_65085657_65085796_65087322_65087482_65088417_65088584_65088806_65089055_65089237_65089403_65089983_65090176_65090281_65090387_65091054_65091194_65091314_65091523_65092415
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096659	chr9	+	2855	14	FSM	ENSMUSG00000032394.7	ENSMUST00000034961.6	3146	14	-4	295	-4	-295	multi-exon	FALSE	canonical	3	39	junction_11	21.5941587543412	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAGATGAAAGAAGAGAGA	NA	False	NA	NA	False	TTTAAA	-29	NA	65048466	65092859	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_65048836_65051537_65051844_65084676_65084822_65085147_65085279_65085657_65085796_65087322_65087482_65088417_65088584_65088806_65089055_65089237_65089403_65089983_65090176_65090281_65090387_65091114_65091194_65091314_65091523_65092415
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096677	chr9	+	2437	13	FSM	ENSMUSG00000015357.11	ENSMUST00000113824.8	2809	13	-19	391	16	-390	multi-exon	FALSE	canonical	3	55	junction_5	89.4905333292609	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCCATTGTTTAGTGTTA	6167	False	NA	26	True	AATAAA	-22	NA	65201557	65237549	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096686	chr9	+	2453	5	FSM	ENSMUSG00000041837.5	ENSMUST00000048184.4	2419	5	-33	-1	-33	1	multi-exon	FALSE	canonical	3	267	junction_1	28.3846349280733	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCCCTGATTTATTC	NA	False	NA	43	True	AATAAA	-26	NA	65253352	65266926	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_65254291_65261891_65262031_65263526_65263764_65263999_65264088_65265875
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096693	chr9	+	3213	4	FSM	ENSMUSG00000086228.4	ENSMUST00000239433.2	846	4	-201	-2166	-201	-162	multi-exon	FALSE	canonical	3	844	junction_1	5.79271573232759	371	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGGTTTTCTCATTCA	NA	False	NA	NA	False	NA	NA	NA	65278926	65287497	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_65279411_65281031_65281242_65284190_65284293_65285080
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096699	chr9	+	2074	9	FSM	ENSMUSG00000059183.13	ENSMUST00000074792.7	2042	9	-25	-7	-25	7	multi-exon	FALSE	canonical	3	114	junction_5	22.1472345903501	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGCCCAGGGTATATGA	NA	False	NA	NA	False	NA	NA	NA	65343038	65360343	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65347731_65348894_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096709	chr9	+	1690	9	FSM	ENSMUSG00000032388.8	ENSMUST00000034955.8	2680	9	-20	1010	-20	-1010	multi-exon	FALSE	canonical	3	680	junction_7	65.1440711039769	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTTCTGTGATGAGTGA	7156	False	NA	15	True	AATAAA	-17	NA	65368208	65394742	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_65368437_65372545_65372633_65376056_65376219_65380919_65381001_65383121_65383268_65387660_65387770_65389142_65389251_65391723_65391865_65394114
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096746	chr9	+	2028	8	FSM	ENSMUSG00000032387.16	ENSMUST00000055844.10	1987	8	-31	-10	-31	8	multi-exon	FALSE	canonical	3	1453	junction_4	112.168059042616	857	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGCTTCTACGATCCAT	NA	False	NA	24	True	AATAAA	-24	NA	65537809	65567818	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096773	chr9	+	207	1	Intergenic	novelGene_371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGACCTGCAAATGGGGA	NA	False	NA	NA	False	NA	NA	NA	65716773	65716980	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_65716800_65717000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096781	chr9	+	993	4	FSM	ENSMUSG00000040204.7	ENSMUST00000045802.7	2188	4	57	1138	-26	-1138	multi-exon	FALSE	canonical	3	794	junction_3	40.4722126896961	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTTGTCATTTATCAGAA	NA	False	NA	NA	False	ATTAAA	-25	NA	65797575	65809410	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096801	chr9	-	2038	16	NNC	ENSMUSG00000032382.15	novel	2073	15	NA	NA	20	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	155.849271912177	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACAGGACTGGGCATGG	NA	False	NA	-9	True	AATAAA	-15	NA	66032059	65995419	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016794_66016911_66023732_66023808_66031888
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096802	chr9	-	1967	15	NNC	ENSMUSG00000032382.15	novel	2073	15	NA	NA	20	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	138.685759167689	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACAGGACTGGGCATGG	NA	False	NA	-9	True	AATAAA	-15	NA	66032059	65995419	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003835_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016794_66016911_66031888
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096803	chr9	-	1937	15	NNC	ENSMUSG00000032382.15	novel	2073	15	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	137.198816708172	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACAGGACTGGGCATGG	NA	False	NA	-9	True	AATAAA	-15	NA	66033869	65995419	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016794_66016911_66033724
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096831	chr9	+	198	1	Intergenic	novelGene_372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTAGGGGAGTAGGGGA	NA	False	NA	NA	False	NA	NA	NA	66637241	66637439	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_66637200_66637400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096849	chr9	-	1785	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113695.8	1607	8	-176	-2	-16	0	multi-exon	FALSE	canonical	3	209	junction_4	182.146722648058	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	False	NA	0	True	AATAAA	-26	NA	66951260	66929871	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096881	chr9	+	1376	13	FSM	ENSMUSG00000032231.15	ENSMUST00000034756.15	1447	13	71	0	-25	0	multi-exon	FALSE	canonical	3	66	junction_7	12.0908022893437	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGTTGCCTTTGCTTTCA	NA	False	NA	NA	False	AATAAA	-25	NA	69360972	69399077	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_69361022_69371741_69371807_69374572_69374673_69383334_69383430_69386959_69387074_69390255_69390347_69391061_69391142_69392479_69392540_69393751_69393846_69394834_69394931_69395336_69395396_69396933_69397057_69398727
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096911	chr9	+	4673	28	FSM	ENSMUSG00000032220.11	ENSMUST00000034745.9	4625	28	-48	0	-30	0	multi-exon	FALSE	canonical	3	179	junction_9	20.3906969292862	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGTTTCTTCATGACA	NA	False	NA	20	True	AATAAA	-20	NA	70114601	70307048	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_70114986_70194193_70194338_70204548_70204639_70208974_70209070_70223873_70223962_70227350_70227441_70229673_70229806_70232114_70232250_70234425_70234559_70242396_70242594_70245010_70245092_70245998_70246086_70248562_70248650_70249263_70249432_70250325_70250412_70253968_70254051_70260541_70260649_70266566_70266666_70269504_70269650_70274897_70275013_70275950_70276121_70277638_70277785_70283785_70283933_70285492_70285651_70286002_70286093_70291085_70291288_70303057_70303228_70306003
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096921	chr9	-	1530	9	NNC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	448.011840663838	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTATCCTGTGTATAT	NA	False	NA	-8	True	AATAAA	-14	NA	70328836	70314973	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326404_70328698
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096947	chr9	-	2552	9	FSM	ENSMUSG00000042444.11	ENSMUST00000049031.6	8081	9	-9	5538	-9	-4	multi-exon	FALSE	canonical	3	12	junction_5	3.11247489949718	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATTGACACTAATACTTA	NA	False	NA	NA	False	NA	NA	NA	70564465	70511833	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_70512572_70514739_70514941_70518110_70518285_70524045_70524189_70534036_70534140_70538277_70538437_70541286_70541352_70552170_70552229_70563554
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096956	chr9	+	4669	16	FSM	ENSMUSG00000054693.15	ENSMUST00000067880.13	4593	16	-76	0	-76	0	multi-exon	FALSE	canonical	3	235	junction_13	22.3632635264971	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGGTCTATGCTCTTTG	4874	False	NA	14	True	AATAAA	-19	NA	70586202	70687511	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_70586542_70610568_70610720_70625939_70626059_70629894_70630054_70647356_70647458_70651132_70651286_70653515_70653609_70655364_70655549_70661443_70661608_70668864_70669049_70673233_70673385_70674153_70674338_70675090_70675200_70676073_70676295_70683654_70683782_70685281
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000096967	chr9	-	2267	4	FSM	ENSMUSG00000032199.14	ENSMUST00000034720.12	2200	4	-67	0	-67	0	multi-exon	FALSE	canonical	3	2231	junction_1	103.721850264167	718	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGAGTTTCCGTTCT	2403	False	NA	1	True	NA	NA	NA	71393284	71385718	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_71386823_71388623_71388829_71390448_71391088_71392965
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097087	chr9	-	4211	6	FSM	ENSMUSG00000042688.17	ENSMUST00000049355.11	4072	6	-21	-118	-21	116	multi-exon	FALSE	canonical	3	266	junction_5	19.2727787306346	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTCCTGTTTGACTCTTT	NA	False	NA	-26	True	AATAAA	-16	NA	75317308	75294067	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860_75306034_75317144
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097107	chr9	-	3612	10	FSM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	-18	73	-18	-73	multi-exon	FALSE	canonical	3	422	junction_2	36.4461381720248	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATAGTCCCTTCATGTGT	NA	False	NA	-2	True	NA	NA	NA	75466957	75405061	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097124	chr9	+	3430	16	FSM	ENSMUSG00000032350.10	ENSMUST00000034905.9	3423	16	-3	-4	-3	4	multi-exon	FALSE	canonical	3	228	junction_1	20.3437131976114	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACGTGTATGAGTGGCTTT	4417	False	NA	22	True	AATAAA	-25	NA	77661813	77701771	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_77662242_77682360_77682474_77683407_77683591_77686803_77686918_77688365_77688425_77688515_77688650_77692615_77692691_77693031_77693149_77693992_77694132_77694558_77694672_77695088_77695182_77695469_77695575_77698996_77699079_77699161_77699266_77699334_77699456_77700321
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097133	chr9	+	2792	8	FSM	ENSMUSG00000032349.14	ENSMUST00000034904.14	2782	8	-9	-1	-9	1	multi-exon	FALSE	canonical	3	515	junction_6	44.3764048354804	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTTCTGTTGTTTGA	NA	False	NA	12	True	ATTAAA	-20	NA	77824636	77891802	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097137	chr9	-	2132	13	NNC	ENSMUSG00000001366.15	novel	2155	13	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	23.9733648498124	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGGATGGCCTTTAA	NA	False	NA	3	True	AATAAA	-31	NA	78015907	77988780	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008805_78008969_78011548_78011637_78015572
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097147	chr9	+	3066	14	NNC	ENSMUSG00000009828.16	novel	2540	14	NA	NA	-514	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	46.097144657366	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGTCTCATTATTTTCTT	NA	False	NA	7	True	TATAAA	-18	NA	78015959	78075224	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_78016764_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067846_78067944_78068094_78071812_78071946_78074191_78074315_78074881
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097164	chr9	+	976	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	12	-11	12	11	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	1280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTTTGTTTTGTTTTC	NA	False	NA	28	True	ATTAAA	-27	NA	78099240	78116642	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097179	chr9	-	799	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	-138	-42	-138	42	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	28231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGTGTCCGTTTGAATCC	NA	False	NA	NA	False	ATTAAA	-44	NA	78275597	78274291	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_78274577_78275002_78275186_78275266
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097194	chr9	-	518	3	NNC	ENSMUSG00000060461.6	novel	619	3	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	3	664	junction_2	88746.5	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78275443	78274333	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_78274577_78275002_78275178_78275343
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097197	chr9	-	607	3	NNC	ENSMUSG00000060461.6	novel	619	3	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	2030	junction_2	88063.5	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78275455	78274333	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_78274577_78275002_78275178_78275266
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097204	chr9	-	612	4	NNC	ENSMUSG00000060461.6	novel	619	3	NA	NA	-617	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_3	84702.6028735573	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78276076	78274333	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_78274577_78275002_78275186_78275266_78275383_78276006
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097231	chr9	+	2579	1	Genic_Genomic	ENSMUSG00000070291.5	novel	NA	NA	NA	NA	-3	-25235	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTATTTAGCTAGATGTG	9039	False	NA	NA	False	TTTAAA	-18	NA	78303055	78305634	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chr9_+_78303100_78305600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097242	chr9	+	2375	12	FSM	ENSMUSG00000032342.14	ENSMUST00000034896.13	2366	12	-8	-1	-8	1	multi-exon	FALSE	canonical	3	57	junction_9	10.2457409010559	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTAGGTGATTTTACGT	NA	False	NA	20	True	AATAAA	-19	NA	78355481	78381435	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_78355793_78356700_78356901_78356999_78357118_78360045_78360336_78364491_78364605_78364697_78364889_78365198_78365330_78368114_78368320_78368801_78368974_78372165_78372285_78377912_78378074_78381071
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097260	chr9	-	1745	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6333.98655134766	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	98	True	ATTAAA	-18	NA	78388953	78385734	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386901_78387057_78387133_78387431_78387522_78387703_78387788_78387971_78388920
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097261	chr9	-	1743	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	6275.98032670789	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	98	True	ATTAAA	-18	NA	78388953	78385734	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387520_78387703_78387788_78387971_78388920
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097262	chr9	-	1830	7	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	intron_retention	FALSE	canonical	0	0	junction_5	5414.21883408247	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	98	True	ATTAAA	-18	NA	78388953	78385734	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_78386141_78386239_78386475_78386559_78387057_78387133_78387431_78387522_78387703_78387788_78387971_78388920
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097263	chr9	-	1745	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	6275.98032670789	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	98	True	ATTAAA	-18	NA	78388953	78385734	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387518_78387703_78387788_78387971_78388920
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097264	chr9	-	1904	6	NIC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	intron_retention	FALSE	canonical	3	9075	junction_5	2485.88838043867	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	98	True	ATTAAA	-18	NA	78388953	78385734	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387431_78387522_78387971_78388920
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097265	chr9	-	1535	6	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1295	4	70	-4	3prime_fragment	FALSE	canonical	3	11573	junction_3	1608.66794584837	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8395	False	NA	98	True	ATTAAA	-18	NA	78387711	78385734	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097266	chr9	-	1733	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6181.43384726904	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	98	True	ATTAAA	-18	NA	78388953	78385734	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387141_78387431_78387522_78387703_78387788_78387971_78388920
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097270	chr9	-	2691	7	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	intron_retention	FALSE	canonical	0	0	junction_6	5340.69375695289	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	98	True	ATTAAA	-18	NA	78388953	78385734	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387788
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097306	chr9	-	1969	1	FSM	ENSMUSG00000059422.6	ENSMUST00000182917.2	1201	1	-77	-691	-77	691	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTGTCGTGTGATGTT	NA	False	NA	NA	False	AATACA	-26	NA	78729197	78727228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_78727200_78729200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097314	chr9	-	548	4	FSM	ENSMUSG00000032330.8	ENSMUST00000034881.8	659	4	111	0	-57	0	multi-exon	FALSE	canonical	3	5621	junction_3	439.918426781855	724	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTCAGCAGTTGGCA	NA	False	NA	0	True	AATAAA	-16	NA	79667049	79662642	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_79662888_79663558_79663644_79665771_79665862_79666921
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097336	chr9	+	717	2	FSM	ENSMUSG00000079225.4	ENSMUST00000055820.7	638	2	-61	-18	-61	18	multi-exon	FALSE	canonical	3	2455	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAAGGACTGAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	81559589	81560748	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_81559913_81560354
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097339	chr9	+	866	2	NNC	ENSMUSG00000079225.4	novel	638	2	NA	NA	-61	18	at_least_one_novel_splicesite	FALSE	canonical	3	2674	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAAGGACTGAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	81559589	81560748	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_81560062_81560354
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097341	chr9	+	1118	2	NNC	ENSMUSG00000079225.4	novel	638	2	NA	NA	-61	18	intron_retention	FALSE	canonical	3	1420	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAAGGACTGAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	81559589	81560748	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_81560470_81560510
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097346	chr9	+	1160	1	FSM	ENSMUSG00000079225.4	ENSMUST00000183511.2	775	1	-75	-310	-61	19	mono-exon	FALSE	NA	NA	NA	NA	NA	786	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGGACTGAGTCTGTAT	NA	False	NA	NA	False	NA	NA	NA	81559589	81560749	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_81559600_81560700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097356	chr9	-	2908	23	ISM	ENSMUSG00000032253.14	ENSMUST00000188868.7	3317	25	-87	6656	21	-31	5prime_fragment	FALSE	canonical	3	34	junction_11	7.22484235865655	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAATGAAGAAAAAGATGGA	NA	False	NA	NA	False	NA	NA	NA	82857548	82782739	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_-_82782907_82785176_82785254_82787701_82787843_82788993_82789112_82790743_82790928_82791839_82791978_82795740_82795967_82797348_82797478_82808449_82808585_82809087_82809242_82810152_82810252_82810881_82810923_82811027_82811129_82812356_82812428_82814538_82814640_82814898_82815121_82827810_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097387	chr9	+	2896	22	NNC	ENSMUSG00000038379.16	novel	2871	22	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_11	54.6264162422717	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTGGTCAGTTTCTTCA	NA	False	NA	13	True	AATAAA	-24	NA	83716751	83754442	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735136_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097427	chr9	-	2077	13	FSM	ENSMUSG00000056131.14	ENSMUST00000070064.11	2666	13	-35	624	-20	0	multi-exon	FALSE	canonical	3	372	junction_7	43.7311070317483	219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTTTCGATTGCTTACC	NA	False	NA	-2	True	ATTAAA	-20	NA	86453915	86437053	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097463	chr9	-	3108	28	FSM	ENSMUSG00000032422.19	ENSMUST00000165315.9	3109	28	0	1	0	-1	multi-exon	TRUE	canonical	3	141	junction_13	28.9754164757839	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTTTGTATTTACTGTC	NA	False	NA	-3	True	AATAAA	-39	NA	88321004	88258803	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097468	chr9	+	580	1	FSM	ENSMUSG00000066443.6	ENSMUST00000155008.2	481	1	-35	-64	-35	64	mono-exon	FALSE	NA	NA	NA	NA	NA	971	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAAGCTACACTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	88272854	88273434	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_88272900_88273400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097475	chr9	-	2528	12	FSM	ENSMUSG00000032423.13	ENSMUST00000069221.12	9450	12	-9	6931	6	-2	multi-exon	FALSE	canonical	3	723	junction_1	80.8280493004688	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCTCTAAGTAGATTTTT	NA	False	NA	-3	True	AATAAA	-26	NA	88364621	88335992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097488	chr9	-	681	5	NIC	ENSMUSG00000097195.11	novel	826	6	NA	NA	-6	1	combination_of_known_junctions	FALSE	canonical	3	461	junction_1	309.579553588411	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTCAATTCTTTTTGT	NA	False	NA	-8	True	AATAAA	-39	NA	88404950	88403103	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536_88404640_88404903
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097490	chr9	-	741	6	FSM	ENSMUSG00000097195.11	ENSMUST00000182232.9	826	6	83	2	0	0	multi-exon	FALSE	canonical	3	405	junction_2	292.278634183205	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404944	88403104	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404640_88404903
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097491	chr9	-	780	6	FSM	ENSMUSG00000097195.11	ENSMUST00000239365.2	809	6	29	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	430.698688180032	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404682_88404903
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097495	chr9	-	1005	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239369.2	1678	5	671	2	0	0	multi-exon	FALSE	canonical	3	405	junction_2	300.420122495148	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404944	88403104	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097498	chr9	-	1266	3	NIC	ENSMUSG00000097195.11	novel	1534	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	461	junction_1	364.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_88403502_88403970_88404435_88404536
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097499	chr9	-	944	4	NIC	ENSMUSG00000097195.11	novel	809	6	NA	NA	-6	0	intron_retention	FALSE	canonical	3	461	junction_1	319.66545011934	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404950	88403104	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097511	chr9	-	400	1	ISM	ENSMUSG00000097195.11	ENSMUST00000239357.2	1481	6	0	27221	0	-1087	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGGTAAAGGCGATGCAG	NA	False	NA	NA	False	AAGAAA	-1	NA	88404941	88404541	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_-_88404500_88404900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097536	chr9	-	1803	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	21	0	-9	0	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	1303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996806	89973717	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097544	chr9	-	1811	13	NIC	ENSMUSG00000062270.15	novel	1882	13	NA	NA	8	2	combination_of_known_junctions	FALSE	canonical	3	67	junction_10	2451.75327855168	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	AATAAA	-20	NA	89996704	89973721	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985822_89989287_89989356_89992178_89992226_89996588
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097556	chr9	+	2238	1	FSM	ENSMUSG00000096647.3	ENSMUST00000178436.3	871	1	-58	-1309	-58	1309	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTATTTTCATTTATACG	NA	False	NA	NA	False	AATACA	-25	NA	90000931	90003169	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_90000900_90003200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097570	chr9	+	2631	19	FSM	ENSMUSG00000032374.15	ENSMUST00000070522.14	3649	19	41	977	0	-969	multi-exon	TRUE	canonical	3	58	junction_10	9.44264688775947	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAAGTTGGTATTTATTT	NA	False	NA	NA	False	AAGAAA	-16	NA	92424316	92489504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_92424622_92453307_92453400_92455523_92455661_92463254_92463419_92466543_92466657_92468891_92468956_92470653_92470752_92473352_92473455_92475797_92475924_92477314_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097576	chr9	-	2722	26	NNC	ENSMUSG00000032407.15	novel	612	6	NA	NA	0	48426	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	236.314028360569	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGCAACGCTTTAAATTT	8302	False	NA	NA	False	AAAAAG	-6	NA	95393938	95290524	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_95290564_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366456_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373317_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097599	chr9	-	572	6	NNC	ENSMUSG00000032407.15	novel	3111	28	NA	NA	0	10	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	326.317391507103	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTCATTCTTACATAAT	8302	False	NA	NA	False	AATGAA	-40	NA	95393938	95375150	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_95375285_95375755_95375871_95377887_95377987_95382740_95382851_95384592_95384638_95393869
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097605	chr9	+	1965	9	FSM	ENSMUSG00000015354.9	ENSMUST00000015498.9	4438	9	-73	2546	-73	867	multi-exon	FALSE	canonical	3	281	junction_3	14.5982661641717	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGCAGCCAGATAACCTT	8302	False	NA	NA	False	AATAAA	-17	NA	95519580	95577603	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_95519927_95520704_95520814_95552057_95552314_95560397_95560523_95563585_95563723_95568738_95568894_95574913_95574998_95576676_95576845_95577018
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097610	chr9	+	1752	9	NNC	ENSMUSG00000015354.9	novel	4438	9	NA	NA	135	864	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	102.509755633305	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAAGGCAGCCAGATAAC	8510	False	NA	NA	False	AATAAA	-14	NA	95519788	95577600	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_95519927_95520704_95520814_95552057_95552314_95560397_95560523_95563585_95563721_95568738_95568894_95574913_95574998_95576676_95576845_95577018
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097658	chr9	-	2917	6	FSM	ENSMUSG00000043587.16	ENSMUST00000078478.8	2908	6	-2	-7	-2	-1	multi-exon	FALSE	canonical	3	26	junction_2	3.9293765408777	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTTACGGTGTGTATCT	NA	False	NA	5	True	AATAAA	-23	NA	96771484	96705389	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_96707676_96710982_96711123_96721138_96721266_96722011_96722171_96738420_96738553_96771411
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097666	chr9	+	764	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-230	-44	230	mono-exon	FALSE	NA	NA	NA	NA	NA	13926	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGACACAAACACCACCCT	NA	False	NA	NA	False	NA	NA	NA	96777666	96778430	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_96777700_96778400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097683	chr9	-	4698	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	24	-4	at_least_one_novel_splicesite	FALSE	canonical	3	212	junction_4	351.164593073635	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATCTTAAGATTTTATAA	NA	False	NA	-8	True	ATTAAA	-33	NA	96993186	96957621	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971647_96975129_96975231_96979155_96979234_96982127_96982293_96992963
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097699	chr9	+	823	4	FSM	ENSMUSG00000046402.11	ENSMUST00000052068.11	2652	4	1809	20	1809	-20	multi-exon	FALSE	canonical	3	98	junction_1	8.01387685344754	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTTTGGAGGAATTTCA	4694	False	NA	21	True	AATAAA	-22	NA	98306822	98328608	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_98307105_98307505_98307685_98326642_98326745_98328348
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097705	chr9	+	3083	22	FSM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	-33	0	-23	0	multi-exon	TRUE	canonical	3	669	junction_10	53.4673910412871	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTTGAGTTTCCTTCCT	NA	False	NA	19	True	CATAAA	-20	NA	98445750	98470435	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097716	chr9	+	3057	22	NNC	ENSMUSG00000032458.7	novel	3050	22	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	168.76793765418	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTTGAGTTTCCTTCCT	NA	False	NA	19	True	CATAAA	-20	NA	98445780	98470435	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469678_98469813_98469883_98470097
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097724	chr9	+	1834	1	FSM	ENSMUSG00000090470.3	ENSMUST00000167951.3	1817	1	-17	0	-17	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTGAGTCAAAAATCATAGC	NA	False	NA	6	True	AATAAA	-19	NA	98746802	98748636	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_98746800_98748600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097739	chr9	+	2646	18	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	4	0	combination_of_known_junctions	TRUE	canonical	3	66	junction_1	83.1088001619555	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125498	99182457	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097783	chr9	-	1766	4	FSM	ENSMUSG00000032475.16	ENSMUST00000116522.8	4476	4	0	2710	0	0	multi-exon	FALSE	canonical	3	120	junction_2	6.34209919681348	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGATATTGCATCTGT	NA	False	NA	-40	True	AATAAA	-18	NA	100428187	100377055	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_100377725_100379310_100380024_100390481_100390726_100428047
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097820	chr9	+	4190	10	FSM	ENSMUSG00000032531.16	ENSMUST00000035121.14	4328	10	136	2	136	-2	multi-exon	FALSE	canonical	3	168	junction_1	19.0852538254079	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCTGTCTGTCTGTCTA	NA	False	NA	15	True	AATAAA	-18	NA	102595002	102610615	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_102595102_102597279_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097842	chr9	-	1863	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	97.1596624119289	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTGAGTCAAATGATGAG	NA	False	NA	3	True	TATAAA	-34	NA	103079336	103066285	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_103066696_103066841_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097856	chr9	+	5277	28	FSM	ENSMUSG00000032555.11	ENSMUST00000035164.10	5224	28	-53	0	-53	0	multi-exon	FALSE	canonical	3	379	junction_13	76.5309229485215	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGATTTGTTCATTT	900	False	NA	14	True	AATAAA	-19	NA	103182360	103227627	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_103182571_103183295_103183387_103185943_103186079_103187015_103187160_103188692_103188875_103189970_103190168_103192252_103192430_103195185_103195353_103197367_103197532_103197672_103197921_103200466_103200826_103201525_103201699_103202840_103203053_103205605_103205893_103209883_103210055_103210143_103210254_103211254_103211379_103213010_103213158_103213262_103213366_103215378_103215572_103219126_103219348_103220746_103220896_103221123_103221236_103221989_103222154_103222940_103223079_103223882_103223973_103224125_103224288_103226980
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097875	chr9	-	3199	5	NIC	ENSMUSG00000032803.16	novel	3387	5	NA	NA	-49	0	combination_of_known_junctions	TRUE	canonical	3	42	junction_2	203.657187449891	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTGGAATGTGATGCTT	NA	False	NA	-8	True	AATAAA	-14	NA	103242867	103230302	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_103232513_103233478_103233633_103237074_103237218_103241173_103241251_103242252
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097887	chr9	-	621	3	NNC	ENSMUSG00000032803.16	novel	3387	5	NA	NA	-85	-2382	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	239	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCAAATAAGGTAGGATGT	NA	False	NA	NA	False	NA	NA	NA	103242903	103241184	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_103241251_103242252_103242302_103242397
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097902	chr9	+	3331	20	FSM	ENSMUSG00000090150.11	ENSMUST00000047799.13	3444	20	38	75	2	-75	multi-exon	FALSE	canonical	3	30	junction_7	6.62112793865633	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTCTTATTGTCATTTT	NA	False	NA	17	True	NA	NA	NA	103940922	104004849	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_103941103_103950820_103950921_103953015_103953142_103953528_103953691_103955761_103955927_103958429_103958572_103958896_103959019_103959989_103960097_103961359_103961487_103967456_103967535_103968790_103968930_103972719_103972828_103974552_103974652_103990660_103990728_103991651_103991738_103992476_103992549_103993363_103993519_104000245_104000363_104001216_104001327_104003780
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097907	chr9	+	1652	10	FSM	ENSMUSG00000032563.17	ENSMUST00000035177.15	3972	10	0	2320	0	84	multi-exon	FALSE	canonical	3	494	junction_1	31.6489229040682	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAGGAGGACTTTTTTAA	NA	False	NA	122	True	AATATA	-28	NA	104930437	104954767	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360_104952439_104954191
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097913	chr9	+	2280	9	FSM	ENSMUSG00000032563.17	ENSMUST00000149243.8	2309	9	29	0	-2	0	multi-exon	FALSE	canonical	3	494	junction_1	31.1879383736726	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTATGTCCTTTTTTGTG	NA	False	NA	NA	False	AATAAA	-2	NA	104930466	104953671	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097922	chr9	-	4924	28	FSM	ENSMUSG00000032570.18	ENSMUST00000038118.15	4876	28	-52	4	-52	1	multi-exon	FALSE	canonical	3	363	junction_24	33.8350310750022	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGACTTCCCAGTTAGT	NA	False	NA	-1	True	AATAAA	-21	NA	105372384	105288560	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_105290389_105291832_105291975_105295248_105295345_105295742_105295891_105297380_105297498_105298772_105298842_105300141_105300309_105301368_105301420_105308693_105308792_105309852_105310024_105312250_105312408_105316539_105316645_105319964_105320055_105320144_105320241_105322416_105322515_105323250_105323376_105326020_105326088_105329002_105329079_105329973_105330043_105330732_105330886_105336858_105336968_105338215_105338278_105341824_105341861_105343781_105343872_105344899_105345017_105347235_105347347_105371613_105371797_105372091
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097936	chr9	+	4885	20	FSM	ENSMUSG00000032571.15	ENSMUST00000065778.13	4711	20	-176	2	13	-2	multi-exon	FALSE	canonical	3	108	junction_1	21.4158146964708	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGGGATTTTTTTGGAG	NA	False	NA	30	True	AGTAAA	-21	NA	105520192	105564854	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_105520590_105521394_105522169_105525864_105525999_105527515_105528099_105531150_105531286_105532014_105532237_105535617_105535792_105538535_105538682_105540240_105540445_105544930_105545133_105546184_105546373_105546944_105547156_105549842_105550009_105553941_105554107_105555307_105555520_105559383_105559516_105562329_105562431_105563332_105563422_105563544_105563654_105564313
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097955	chr9	+	3613	8	NIC	ENSMUSG00000020257.14	novel	3747	9	NA	NA	0	-33	combination_of_known_junctions	FALSE	canonical	3	45	junction_3	76.5447714792874	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTCGTAAACAGGATTTT	NA	False	NA	21	True	TATAAA	-18	NA	106048127	106068305	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_106048579_106053811_106053910_106057764_106057832_106061378_106061496_106061881_106062038_106062447_106062518_106063568_106063712_106065794
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097969	chr9	+	1614	9	FSM	ENSMUSG00000023277.14	ENSMUST00000024047.12	1596	9	-16	-2	-16	2	multi-exon	FALSE	canonical	3	299	junction_8	33.0111250186963	487	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGCCTGGGTGCCTTTCC	NA	False	NA	21	True	AATAAA	-18	NA	106080290	106092590	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_106080484_106084087_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000097981	chr9	-	2224	11	FSM	ENSMUSG00000032786.17	ENSMUST00000141118.9	3399	11	720	455	-64	14	multi-exon	TRUE	canonical	3	139	junction_7	18.0612845611822	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGTTAGGTGTTTCTGC	8498	False	NA	0	True	AATAAA	-45	NA	106125133	106111111	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_106111397_106112586_106112750_106113638_106113908_106115273_106115439_106115841_106116022_106116730_106116916_106118314_106118538_106118834_106118985_106120360_106120595_106123957_106124178_106124983
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098000	chr9	+	864	4	FSM	ENSMUSG00000048758.15	ENSMUST00000217081.2	466	4	-2	-396	-2	0	multi-exon	FALSE	canonical	3	58	junction_1	2158.78427721613	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCTGTTGTCATAG	NA	False	NA	3	True	AATAAA	-19	NA	106306758	106308767	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_106307013_106307168_106307214_106307506_106307572_106308267
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098010	chr9	-	1270	7	NNC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	104.893067242576	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	False	NA	1	True	AATAAA	-28	NA	106324877	106317249	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_106317604_106317819_106318056_106321021_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098014	chr9	-	1263	7	NNC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	104.56165113888	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGACGTTGTGTTTCCTG	NA	False	NA	-1	True	AATAAA	-26	NA	106324877	106317251	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_106317604_106317819_106318056_106321021_106321142_106321288_106321506_106322724_106322856_106322969_106323029_106324729
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098018	chr9	+	2068	13	FSM	ENSMUSG00000023495.14	ENSMUST00000024260.14	2035	13	-33	0	-33	0	multi-exon	FALSE	canonical	3	316	junction_11	32.902212016148	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGCAGTAATACTAGTG	1567	False	NA	27	True	AATAAA	-20	NA	106331007	106341211	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_106331207_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340329
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098025	chr9	+	2028	12	NNC	ENSMUSG00000023495.14	novel	2035	13	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	107.339193584351	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGCAGTAATACTAGTG	1591	False	NA	27	True	AATAAA	-20	NA	106331031	106341211	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_106331207_106337203_106337357_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340329
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098054	chr9	-	1618	6	FSM	ENSMUSG00000040813.17	ENSMUST00000169068.8	1364	6	-254	0	-9	0	multi-exon	TRUE	canonical	3	151	junction_5	120.179865202121	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGGTTTTTGTCTG	7859	False	NA	0	True	AATAAA	-28	NA	106563135	106535944	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562833
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098089	chr9	-	2729	11	NNC	ENSMUSG00000032577.17	novel	2816	11	NA	NA	-14	1	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_10	45.4053961550827	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGGTTTCTTTATGTC	NA	False	NA	-1	True	AATAAA	-25	NA	107166992	107132124	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166727
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098110	chr9	-	1585	11	FSM	ENSMUSG00000032579.15	ENSMUST00000035196.14	2192	11	-1	608	-1	0	multi-exon	FALSE	canonical	3	133	junction_9	21.6296093353532	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTGTTATTAACATTCA	NA	False	NA	-12	True	AATAAA	-12	NA	107215550	107204890	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214199_107214578_107215479
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098115	chr9	+	2144	2	FSM	ENSMUSG00000010045.3	ENSMUST00000010189.3	2194	2	61	-11	61	11	multi-exon	FALSE	canonical	3	142	junction_1	0	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCTCTCATCTTTATCAG	NA	False	NA	44	True	NA	NA	NA	107411204	107415883	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_107412529_107415063
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098147	chr9	+	2195	4	FSM	ENSMUSG00000010051.16	ENSMUST00000010195.14	3014	4	-12	831	8	585	multi-exon	FALSE	canonical	3	13	junction_3	10.4029910228848	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACCAACCAACCAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	107454144	107457346	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_107454278_107454751_107455676_107456079_107456170_107456298
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098155	chr9	+	2009	12	FSM	ENSMUSG00000010048.11	ENSMUST00000010192.11	2056	12	64	-17	-20	17	multi-exon	TRUE	canonical	3	631	junction_11	35.5716016363504	366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGCCTTCCCTCCCTCC	NA	False	NA	38	True	ATTAAA	-33	NA	107464904	107470254	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098180	chr9	-	3023	19	NNC	ENSMUSG00000057969.16	novel	3410	21	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_18	15.5384826944089	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGAATGGCCCCAGCAG	6879	False	NA	-22	True	AATAAA	-16	NA	107483880	107475551	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645_107482787_107483744
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098193	chr9	+	195	1	Intergenic	novelGene_373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTTTATTTTATGTCA	1672	False	NA	NA	False	NA	NA	NA	107589549	107589744	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_107589500_107589700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098196	chr9	-	3087	25	FSM	ENSMUSG00000032580.13	ENSMUST00000182659.8	3205	25	-6	124	-6	0	multi-exon	FALSE	canonical	3	262	junction_19	112.690456068333	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTCTTTATTGAG	9699	False	NA	-1	True	AAGAAA	-17	NA	107648201	107617693	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098234	chr9	+	3036	11	FSM	ENSMUSG00000032936.14	ENSMUST00000035700.14	3277	11	238	3	4	-3	multi-exon	FALSE	canonical	3	33	junction_4	7.3729234364667	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCCTCTTGCCTTTGCTT	NA	False	NA	15	True	AATAAA	-23	NA	107813110	107826887	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823064_107823277_107823417_107823538_107823660_107823816_107823893_107823981_107824119_107824280_107824360_107824578_107824667_107824942
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098262	chr9	+	2239	6	FSM	ENSMUSG00000032594.12	ENSMUST00000167159.9	2157	6	-10	-72	-1	38	multi-exon	FALSE	canonical	3	91	junction_5	93.84540478894	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGGCTGTGACTGCT	6852	False	NA	74	True	TATAAA	-44	NA	107879831	107923380	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922513_107922661
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098263	chr9	+	4989	5	ISM	ENSMUSG00000032594.12	ENSMUST00000035214.11	4559	6	132	0	-1	0	intron_retention	FALSE	canonical	3	292	junction_3	27.3541587331799	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCCAAGTCTGTGTGA	6852	False	NA	17	True	AATAAA	-17	NA	107879831	107925981	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098292	chr9	+	2276	18	NNC	ENSMUSG00000032591.16	novel	2262	18	NA	NA	-9	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	12.4013058805616	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGTGCTTCTTAGTTTCT	6654	False	NA	19	True	CATAAA	-24	NA	107957625	107962203	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_107957730_107958343_107958492_107958583_107958701_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959521_107959663_107959860_107960018_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098338	chr9	+	206	1	Intergenic	novelGene_374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGGATCTGTGGCAATAC	NA	False	NA	NA	False	NA	NA	NA	108129591	108129797	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_108129600_108129800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098352	chr9	+	2095	9	FSM	ENSMUSG00000032607.13	ENSMUST00000035230.7	2082	9	-11	-2	6	2	multi-exon	TRUE	canonical	3	166	junction_5	15.4029218007494	271	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTCTAGCTTCCTTGTT	NA	False	NA	23	True	AATAAA	-24	NA	108174057	108179503	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098371	chr9	+	2206	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	0	-9	0	9	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	1339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTGTGTGTTGCTTTC	NA	False	NA	24	True	AATAAA	-24	NA	108183327	108215142	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098394	chr9	+	1070	1	FSM	ENSMUSG00000063856.9	ENSMUST00000192401.2	900	1	370	-540	-3	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTGTGTGTCCTGTGTC	NA	False	NA	17	True	AATAAA	-17	NA	108216471	108217541	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_108216500_108217500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098435	chr9	+	2483	24	FSM	ENSMUSG00000032604.17	ENSMUST00000006838.16	2800	24	317	0	-33	0	multi-exon	FALSE	canonical	3	468	junction_2	39.8133167299073	649	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCTCTCTGTTGTCTGCCT	NA	False	NA	18	True	AATAAA	-21	NA	108385221	108393140	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098466	chr9	+	3298	11	NIC	ENSMUSG00000006673.15	novel	3331	11	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	232.186649056314	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGGAGAACGTGTCTTTA	1147	False	NA	68	True	NA	NA	NA	108394285	108437366	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_108394440_108395965_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098505	chr9	+	1697	14	FSM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	150	11	-3	4	multi-exon	TRUE	canonical	3	1280	junction_13	396.993628196225	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1145	False	NA	25	True	AATAAA	-18	NA	108437634	108442772	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098509	chr9	+	1736	15	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	4	combination_of_known_junctions	FALSE	canonical	3	50	junction_9	848.284297862456	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1178	False	NA	25	True	AATAAA	-18	NA	108437667	108442772	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441111_108441184_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098526	chr9	+	1880	10	NIC	ENSMUSG00000019039.15	novel	1746	12	NA	NA	10	0	intron_retention	FALSE	canonical	3	128	junction_6	18.4357409183867	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAGAGTGAGGCGTGTT	NA	False	NA	14	True	AATAAA	-16	NA	108447094	108449972	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449497_108449591_108449661_108449749
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098551	chr9	-	3944	16	FSM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	-19	-1	-13	1	multi-exon	TRUE	canonical	3	517	junction_5	114.47891605978	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGAGTCTTTTTTTCA	NA	False	NA	NA	False	AATAAA	-21	NA	108526598	108480139	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098561	chr9	-	3943	16	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	359	junction_14	154.606683771002	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	108526601	108480140	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521565_108522131_108522194_108526427
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098637	chr9	+	2015	12	ISM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	58	0	-23	0	intron_retention	FALSE	canonical	3	5755	junction_3	203.476073278148	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	18	True	AATAAA	-14	NA	108765758	108778691	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098652	chr9	+	1669	13	NIC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	1708.58941983016	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	18	True	AATAAA	-14	NA	108765766	108778691	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_108765938_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098655	chr9	+	1582	13	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1704.28320506175	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	18	True	AATAAA	-14	NA	108765768	108778691	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776545_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098669	chr9	+	1840	6	FSM	ENSMUSG00000025647.17	ENSMUST00000026737.12	1834	6	-6	0	-6	0	multi-exon	FALSE	canonical	3	153	junction_2	42.9678949914934	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCTTTCTTCAGCGCCT	NA	False	NA	18	True	AATAAA	-18	NA	108867646	108886792	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_108867833_108869937_108870095_108880434_108880522_108885045_108885162_108885354_108885574_108885717
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098698	chr9	-	678	4	FSM	ENSMUSG00000091537.3	ENSMUST00000167504.3	944	4	170	96	-39	-96	multi-exon	FALSE	canonical	3	4656	junction_3	487.196743284134	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTGCTTGTTTATC	NA	False	NA	NA	False	ATTAAA	-24	NA	108911485	108907050	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_108907494_108911069_108911158_108911238_108911295_108911394
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098702	chr9	-	431	3	FSM	ENSMUSG00000091537.3	ENSMUST00000193868.2	380	3	0	-51	0	51	multi-exon	FALSE	canonical	3	59	junction_2	2893	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTGTCTCTAGTGTTCA	NA	False	NA	NA	False	AATAAA	-17	NA	108911446	108907202	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_108907494_108911069_108911158_108911394
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098711	chr9	+	1065	7	FSM	ENSMUSG00000032478.15	ENSMUST00000035053.12	1074	7	9	0	-4	0	multi-exon	FALSE	canonical	3	194	junction_1	146.935359937627	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTGCAAGCTTTCTCT	NA	False	NA	25	True	AATAAA	-32	NA	109661834	109672042	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_109661876_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098718	chr9	+	1142	7	FSM	ENSMUSG00000032478.15	ENSMUST00000200005.5	719	7	22	-445	0	0	multi-exon	FALSE	canonical	3	252	junction_1	126.972000413039	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTGCAAGCTTTCTCT	NA	False	NA	25	True	AATAAA	-32	NA	109661838	109672042	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098732	chr9	+	3687	15	FSM	ENSMUSG00000032477.15	ENSMUST00000094324.8	3632	15	-54	-1	-54	1	multi-exon	FALSE	canonical	3	454	junction_8	39.8577188898467	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTGCCTAGTTCCTAAT	NA	False	NA	29	True	AATAAA	-19	NA	109704592	109722964	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_109705228_109706228_109706303_109707335_109707379_109708298_109708336_109708901_109709004_109710540_109710646_109712556_109712683_109713186_109713262_109713410_109713579_109716315_109716415_109717941_109718005_109718099_109718199_109718778_109718910_109720812_109720925_109721146
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098740	chr9	+	3629	15	NNC	ENSMUSG00000032477.15	novel	3632	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_4	122.641442707544	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCTGCCTAGTTCCTAA	NA	False	NA	28	True	AATAAA	-18	NA	109704646	109722963	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_109705228_109706228_109706303_109707335_109707379_109708298_109708336_109708904_109709004_109710540_109710646_109712556_109712683_109713186_109713262_109713410_109713579_109716315_109716415_109717941_109718005_109718099_109718199_109718778_109718910_109720812_109720925_109721146
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098757	chr9	+	211	1	Intergenic	novelGene_375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCCATTGGTGGACTAGT	9052	False	NA	NA	False	NA	NA	NA	109905491	109905702	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_109905500_109905700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098769	chr9	-	3990	23	FSM	ENSMUSG00000032480.18	ENSMUST00000198425.5	3968	23	-22	0	-7	0	multi-exon	FALSE	canonical	3	120	junction_20	140.114150629448	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	-1	True	AATAAA	-21	NA	109946512	109913387	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942094_109944103_109944230_109944558_109944651_109946425
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098772	chr9	-	3773	19	FSM	ENSMUSG00000032480.18	ENSMUST00000062368.13	3806	19	33	0	-15	0	multi-exon	FALSE	canonical	3	264	junction_18	79.7176537599273	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	-1	True	AATAAA	-21	NA	109930122	109913387	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098784	chr9	-	4047	23	NNC	ENSMUSG00000032480.18	novel	4441	23	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_21	156.078578694428	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCTGCTGTCCTCCCAA	NA	False	NA	-3	True	AATAAA	-19	NA	109946512	109913389	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944224_109944558_109944651_109946425
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098791	chr9	-	3959	23	NNC	ENSMUSG00000032480.18	novel	3968	23	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_21	160.130247864018	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTGCTGTCCTCCCA	NA	False	NA	-4	True	AATAAA	-18	NA	109946490	109913390	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942094_109944103_109944224_109944558_109944651_109946425
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098801	chr9	+	4749	28	FSM	ENSMUSG00000032481.18	ENSMUST00000088716.12	5717	28	6	962	6	-962	multi-exon	FALSE	canonical	3	994	junction_27	99.253261289205	233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAATCTGAGCCTGTAT	2451	False	NA	NA	False	NA	NA	NA	109961053	110068284	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944_110064122_110066886
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098838	chr9	+	1732	3	NNC	ENSMUSG00000044791.17	novel	7442	19	NA	NA	-3403	-15800	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	16	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATGATAAATTTAAAAATT	NA	False	NA	NA	False	TATAAA	-27	NA	110358261	110377880	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_110358374_110374367_110374384_110376276
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098866	chr9	-	1933	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	13	-14	13	14	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTCTAAGTGGTAAGTTA	NA	False	NA	-1	True	AGTAAA	-35	NA	110775213	110768656	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098872	chr9	-	2828	6	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_1	1780.14781408736	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	-15	True	AGTAAA	-21	NA	110775162	110768670	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_110770848_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098922	chr9	-	4469	18	FSM	ENSMUSG00000032504.16	ENSMUST00000035086.13	5951	18	-12	1494	-12	1234	multi-exon	FALSE	canonical	3	268	junction_2	35.4147936949624	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCTGAATATTCTCTTGG	NA	False	NA	NA	False	AATAGA	-20	NA	113537339	113482305	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_113484176_113485084_113485276_113486153_113486278_113488898_113488994_113490013_113490149_113491336_113491586_113500824_113500995_113501770_113501883_113503392_113503571_113507373_113507498_113509020_113509244_113514374_113514492_113516692_113516794_113518642_113518797_113520520_113520649_113526573_113526644_113529036_113529092_113536966
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098930	chr9	-	3219	18	NNC	ENSMUSG00000032504.16	novel	5951	18	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	77.3019514339821	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTGTTATGTTTTGTC	NA	False	NA	-9	True	AATAAA	-16	NA	113537315	113483540	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_-_113484176_113485084_113485276_113486144_113486278_113488898_113488994_113490013_113490149_113491336_113491586_113500824_113500995_113501770_113501883_113503392_113503571_113507373_113507498_113509020_113509244_113514374_113514492_113516692_113516794_113518642_113518797_113520520_113520649_113526573_113526644_113529036_113529092_113536966
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098938	chr9	+	6316	36	NIC	ENSMUSG00000033392.17	novel	2727	16	NA	NA	-16	15	combination_of_known_splicesites	FALSE	canonical	3	90	junction_24	28.274947445773	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTAGCTCAGCTCTTTC	NA	False	NA	30	True	AATAAA	-31	NA	113570524	113748765	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_113570944_113590657_113590737_113595635_113595740_113599264_113599357_113600850_113600927_113602747_113602846_113615631_113615703_113642209_113642357_113664242_113664323_113670626_113670720_113673141_113673288_113676770_113676907_113677548_113677620_113679190_113679251_113680890_113680969_113681690_113681859_113682416_113682473_113683240_113683415_113691253_113691356_113697615_113697787_113699690_113699799_113705311_113705419_113709009_113709255_113710755_113710820_113719025_113719190_113721464_113721544_113725709_113725854_113728523_113728668_113730558_113730666_113732909_113733064_113735064_113735294_113737754_113737949_113738483_113738613_113740477_113740685_113744205_113744323_113747062
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098948	chr9	+	3461	17	NNC	ENSMUSG00000009741.16	novel	3850	17	NA	NA	211	-1	intron_retention	TRUE	canonical	3	42	junction_1	101.01175674148	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTATTTTGAATTCATTA	1513	False	NA	16	True	AATAAA	-17	NA	113760212	113806068	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_113760288_113760575_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098963	chr9	-	1738	7	FSM	ENSMUSG00000032431.7	ENSMUST00000084881.5	1674	7	-60	-4	-60	4	multi-exon	FALSE	canonical	3	526	junction_5	47.5280618862864	484	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCGTCCTTCCAGACGT	NA	False	NA	NA	False	GATAAA	-24	NA	114219803	114204197	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_114204651_114207107_114207192_114208977_114209124_114210653_114210783_114213763_114213936_114215269_114215420_114219199
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098972	chr9	+	2384	16	FSM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	16	-4	-16	4	multi-exon	FALSE	canonical	3	295	junction_2	39.3725228497687	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGTCCTGTCATTAATATA	NA	False	NA	28	True	AATAAA	-19	NA	114230159	114303449	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098987	chr9	+	2155	15	NIC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	40	1	combination_of_known_junctions	FALSE	canonical	3	112	junction_1	76.8975265651421	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGGTCCTGTCATTAAT	NA	False	NA	25	True	AATAAA	-16	NA	114230215	114303446	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_114230338_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000098988	chr9	+	3211	2	FSM	ENSMUSG00000079260.4	ENSMUST00000111820.4	2921	2	43	-333	43	333	multi-exon	FALSE	canonical	3	40	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATCTAGTTAGCTGAGG	NA	False	NA	NA	False	NA	NA	NA	114230215	114236677	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_114230338_114233588
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099037	chr9	+	2685	13	FSM	ENSMUSG00000032435.10	ENSMUST00000047404.7	2601	13	-68	-16	-68	16	multi-exon	FALSE	canonical	3	336	junction_8	45.3210767744986	603	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGCCTTTTCTTATAT	2058	False	NA	19	True	AATAAA	-32	NA	114517789	114553386	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542672_114544161_114544298_114544667_114544780_114546930_114546991_114548925_114548971_114549616_114549738_114550772_114550926_114552320
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099098	chr9	+	3922	12	FSM	ENSMUSG00000040875.13	ENSMUST00000183104.8	2477	12	-395	-1050	-395	1048	multi-exon	FALSE	canonical	3	27	junction_1	15.4807264868928	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGTGTCTTGTGTTATT	NA	False	NA	NA	False	ATTAAA	-3	NA	114807241	115062341	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_114808033_114890900_114891077_114896313_114896394_114938467_114938660_114996149_114996361_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099110	chr9	-	4843	16	FSM	ENSMUSG00000032437.11	ENSMUST00000035010.10	4221	16	-511	-111	-511	111	multi-exon	FALSE	canonical	3	623	junction_10	54.7444974403821	331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTTGTCTCTTGCAGACC	NA	False	NA	-1	True	AATAAA	-20	NA	115140000	115071537	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_115073114_115075112_115075326_115077572_115077687_115079846_115080021_115080745_115080918_115081566_115081755_115082900_115083113_115083856_115084012_115085200_115085250_115086503_115086651_115087529_115087629_115095161_115095262_115096377_115096444_115105771_115106060_115109478_115109588_115138819
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099122	chr9	-	256	1	FSM	ENSMUSG00000080848.4	ENSMUST00000117563.2	472	1	-44	260	-44	-260	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCCGCCGTGCAGTCAAA	NA	False	NA	NA	False	AAGAAA	-29	NA	115870176	115869920	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_115869900_115870200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099126	chr9	+	3121	8	FSM	ENSMUSG00000039285.13	ENSMUST00000044454.12	3396	8	16	259	16	-259	multi-exon	FALSE	canonical	0	0	junction_7	57.0105611411838	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTGAAATACTGTCC	9601	False	NA	NA	False	ATTAAA	-25	NA	117869582	117892648	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124_117888244_117890781
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099134	chr9	+	1249	5	ISM	ENSMUSG00000039285.13	ENSMUST00000134433.8	2499	7	-45	8754	-23	71	5prime_fragment	FALSE	canonical	3	140	junction_4	16.3783393541592	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGGTTGTGTCTTAATT	9620	False	NA	NA	False	AATATA	-26	NA	117869601	117880798	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099190	chr9	+	191	1	Intergenic	novelGene_376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTAGTTTGGGCTGGAG	1262	False	NA	NA	False	NA	NA	NA	119103758	119103949	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_119103800_119103900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099261	chr9	-	2982	5	NIC	ENSMUSG00000032515.9	novel	2906	5	NA	NA	-88	1	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	4.71036092035419	215	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCTTCTTGGTGAGGT	NA	False	NA	3	True	AATAAA	-18	NA	119813812	119800227	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119813699
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099268	chr9	-	2991	5	NIC	ENSMUSG00000032515.9	novel	2906	5	NA	NA	38	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_4	8.5	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTTCTTGGTGAGG	NA	False	NA	2	True	AATAAA	-17	NA	119812807	119800228	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119812684
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099299	chr9	+	1041	7	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-2	14	at_least_one_novel_splicesite	FALSE	canonical	3	123	junction_6	1794.22347796725	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAGACTGTACCTGGATT	NA	False	NA	19	True	AATAAA	-29	NA	119956852	119960639	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960468
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099302	chr9	+	1044	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	98	796	-2	14	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAGACTGTACCTGGATT	NA	False	NA	19	True	AATAAA	-29	NA	119956852	119960639	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099333	chr9	+	807	5	NIC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	1	0	intron_retention	FALSE	canonical	3	10044	junction_1	2963.91573766867	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400580	120403501	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402884_120403160
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099384	chr9	+	201	1	Intergenic	novelGene_377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCAGTTCCTGCCCCTTC	NA	False	NA	NA	False	NA	NA	NA	121198162	121198363	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_121198200_121198400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099446	chr9	+	2025	4	FSM	ENSMUSG00000057895.12	ENSMUST00000051667.14	2010	4	-15	0	-15	0	multi-exon	FALSE	canonical	3	61	junction_1	7.71722460186015	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTTGTTTTAACTGTAT	4859	False	NA	11	True	AATAAA	-22	NA	122752121	122760093	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_+_122752284_122754072_122754362_122755374_122755520_122758664
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099463	chr9	-	2474	7	FSM	ENSMUSG00000025786.18	ENSMUST00000147563.9	6987	7	-8	4521	-8	1	multi-exon	FALSE	canonical	3	232	junction_1	22.8454955443445	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGCTCTGCTCTCTCCCC	8705	False	NA	0	True	AATAAA	-17	NA	122942278	122905895	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122929327_122929658_122942060
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099464	chr9	-	2507	8	FSM	ENSMUSG00000025786.18	ENSMUST00000026892.15	2492	8	-14	-1	10	1	multi-exon	FALSE	canonical	3	31	junction_6	109.785505158273	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGCTCTGCTCTCTCCCC	8724	False	NA	0	True	AATAAA	-17	NA	122942259	122905895	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122927987_122928040_122929327_122929658_122942060
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099470	chr9	-	2458	7	NIC	ENSMUSG00000025786.18	novel	2492	8	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	97.6774738048077	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCTCTGCTCTCTCCC	8724	False	NA	-1	True	AATAAA	-16	NA	122942259	122905896	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122929323_122929658_122942060
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099489	chr9	+	207	1	Intergenic	novelGene_378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCCTGAAGTTGGCTGG	4951	False	NA	NA	False	NA	NA	NA	122986500	122986707	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chr9_+_122986500_122986700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099552	chrM	+	1619	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	-3	-71	-3	71	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	-2	True	NA	NA	False	NA	NA	NA	5324	6943	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrM_+_5300_6900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099555	chrM	+	691	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	-2	-5	-2	5	mono-exon	FALSE	NA	NA	NA	NA	NA	1254	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATGAAGCTAAGAGCGTTA	-3	True	NA	NA	False	ACTAAA	-40	NA	7010	7701	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrM_+_7000_7700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099562	chrM	+	785	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	0	-1	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	-2	True	NA	NA	False	NA	NA	NA	8606	9391	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrM_+_8600_9400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099567	chrM	+	1670	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-291	-1	-291	1	mono-exon	FALSE	NA	NA	NA	NA	NA	210	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAATATAGTTTACAAAAAA	-2	True	NA	14	True	NA	NA	NA	9875	11545	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrM_+_9900_11500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099571	chrM	+	3548	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-1724	0	1724	mono-exon	FALSE	NA	NA	NA	NA	NA	1047	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTGATAGTATAAACATTA	-4	True	NA	13	True	ACTAAA	-13	NA	11741	15289	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrM_+_11700_15300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099579	chrM	-	766	1	Intergenic	novelGene_379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAGTAGTTTAATTAGA	0	True	NA	-5	True	CATAAA	-32	NA	16188	15422	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrM_-_15400_16200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099606	chrUn_MU069435v1	+	1162	1	Intergenic	novelGene_380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTTCGGAGGTCGACC	NA	False	NA	22	True	NA	NA	NA	0	1162	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrUn_MU069435v1_+_0_1200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099609	chrUn_MU069435v1	+	248	3	Intergenic	novelGene_381	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	139	junction_1	109.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTAGCAGTTGTAGGACA	NA	False	NA	NA	False	NA	NA	NA	3309	7362	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrUn_MU069435v1_+_3351_3591_3670_7233
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099611	chrUn_MU069435v1	-	258	2	Intergenic	novelGene_382	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGAGCCAGGCAGTGGTGG	NA	False	NA	NA	False	TTTAAA	-5	NA	6763	4416	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrUn_MU069435v1_-_4528_6616
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099615	chrUn_MU069435v1	+	518	2	Intergenic	novelGene_383	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	21	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTCCAGCTATTTAT	NA	False	NA	NA	False	AATAAA	-14	NA	14031	15286	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrUn_MU069435v1_+_14170_14906
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099618	chrUn_MU069435v1	+	491	2	Intergenic	novelGene_384	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	30	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTCCAGCTATTTAT	NA	False	NA	NA	False	AATAAA	-14	NA	14904	22056	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrUn_MU069435v1_+_15016_21676
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099623	chrUn_MU069435v1	+	379	1	Intergenic	novelGene_385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGAAGTCTCCAGCTATT	NA	False	NA	NA	False	AATAAA	-11	NA	21674	22053	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrUn_MU069435v1_+_21700_22100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099735	chrX	+	2917	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115677.8	2943	10	24	2	24	0	multi-exon	FALSE	canonical	3	13	junction_1	93.7669820010234	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7630221	7641438	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_7630268_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099791	chrX	-	1102	7	FSM	ENSMUSG00000031157.11	ENSMUST00000033497.9	1104	7	3	-1	3	1	multi-exon	FALSE	canonical	3	139	junction_6	154.654902569847	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGGCTTGAGTGCTTCC	299	False	NA	0	True	AATAAA	-23	NA	7765505	7760756	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765407
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099811	chrX	-	4038	29	FSM	ENSMUSG00000031161.16	ENSMUST00000115642.8	4069	29	36	-5	-15	5	multi-exon	FALSE	canonical	3	285	junction_28	46.7627942767691	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTTTTTTTTTATTTTG	NA	False	NA	NA	False	AATAAA	-30	NA	7814092	7796353	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813888
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099829	chrX	+	1112	3	NIC	ENSMUSG00000087193.8	novel	1177	4	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	67	junction_1	23	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	NA	False	NA	29	True	TATAAA	-19	NA	7917826	7939198	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_+_7917897_7936874_7937304_7938585
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099877	chrX	-	1172	5	FSM	ENSMUSG00000031168.15	ENSMUST00000033509.15	1743	5	575	-4	-39	4	multi-exon	FALSE	canonical	3	751	junction_2	18.0190871022924	489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGATATTTAATTACTAATC	NA	False	NA	1	True	AATAAA	-23	NA	8059176	8051563	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_8052073_8052882_8053014_8053121_8053159_8056317_8056676_8059039
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099911	chrX	+	905	1	FSM	ENSMUSG00000072249.4	ENSMUST00000097029.4	847	1	-63	5	-63	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGTATCAAATTGATGC	NA	False	NA	25	True	AATAAA	-25	NA	8929190	8930095	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_8929200_8930100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099915	chrX	-	843	2	Antisense	novelGene_ENSMUSG00000083123.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	31	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTCCTGCCCACCGACC	NA	False	NA	NA	False	NA	NA	NA	8946973	8929253	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Antisense_chrX_-_8929910_8946786
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099922	chrX	-	2139	5	FSM	ENSMUSG00000031176.9	ENSMUST00000033519.3	2176	5	37	0	37	0	multi-exon	FALSE	canonical	3	232	junction_4	27.1523479647709	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGCTCTGGTTGATCC	NA	False	NA	-1	True	AATAAA	-21	NA	9529205	9520505	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_9522303_9522618_9522697_9523279_9523404_9527218_9527261_9529107
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099931	chrX	-	2678	17	FSM	ENSMUSG00000031174.18	ENSMUST00000115533.8	2739	17	214	-153	27	-3	multi-exon	FALSE	canonical	3	37	junction_1	23.3939595569027	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATATGTGCTTGGAAGTA	NA	False	NA	-3	True	AATAAA	-29	NA	10082945	10024457	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_10025089_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099934	chrX	-	2722	17	FSM	ENSMUSG00000031174.18	ENSMUST00000073392.11	2926	17	201	3	14	-3	multi-exon	FALSE	canonical	3	77	junction_1	17.609368067878	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATATGTGCTTGGAAGTA	NA	False	NA	-3	True	AATAAA	-29	NA	10082958	10024457	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099959	chrX	+	2363	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	-37	-2	-37	2	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGGTTACAGTTTTATTT	NA	False	NA	86	True	AATAAA	-21	NA	12454002	12483290	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099984	chrX	+	221	1	Intergenic	novelGene_386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCTCCCTATGGAAGCTA	NA	False	NA	NA	False	NA	NA	NA	12729694	12729915	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_12729700_12729900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000099994	chrX	+	1332	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-30	-92	-30	92	mono-exon	FALSE	NA	NA	NA	NA	NA	2551	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAACACAACTCTTGAGA	NA	False	NA	NA	False	NA	NA	NA	13068779	13070111	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_13068800_13070100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100023	chrX	-	2291	14	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68052	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_13	14.945265027612	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117555	16998287	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100056	chrX	+	4765	13	FSM	ENSMUSG00000037315.16	ENSMUST00000115384.9	4866	13	100	1	0	-1	multi-exon	FALSE	canonical	3	119	junction_1	19.6800801714717	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTGTCAGTGTGATGAT	NA	False	NA	8	True	ATTAAA	-16	NA	20292026	20386177	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_20292070_20295261_20295371_20301449_20301538_20326754_20326812_20328350_20328431_20345752_20345911_20355940_20356132_20360395_20360608_20365664_20365833_20368634_20368752_20377258_20377730_20378974_20379093_20383224
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100060	chrX	-	347	1	FSM	ENSMUSG00000084830.3	ENSMUST00000117527.2	174	1	-57	-116	-57	116	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATTAGATAAACAATTTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	20447610	20447263	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_20447300_20447600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100077	chrX	+	3186	23	NIC	ENSMUSG00000031060.17	novel	3172	23	NA	NA	-24	6	combination_of_known_junctions	TRUE	canonical	3	194	junction_9	67.1727297333874	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTACTTTCTCATGTC	531	False	NA	34	True	AATAAA	-22	NA	20483997	20517133	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100115	chrX	+	3470	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-475	at_least_one_novel_splicesite	TRUE	canonical	3	59	junction_24	748.843338489433	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	46	True	AATAAA	-15	NA	20524659	20548943	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548351_20548449_20548616
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100116	chrX	+	3480	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	784.046229249271	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	48	True	AATAAA	-17	NA	20524659	20548945	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538391_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100117	chrX	+	3470	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	783.772075032021	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	48	True	AATAAA	-17	NA	20524659	20548945	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538759_20539064_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100119	chrX	+	3473	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	783.663301169577	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	48	True	AATAAA	-17	NA	20524659	20548945	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541827_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100168	chrX	+	3146	16	FSM	ENSMUSG00000031065.15	ENSMUST00000033380.7	3120	16	-26	0	-26	0	multi-exon	FALSE	canonical	3	1538	junction_15	84.886172149663	399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTGGTTATAAATCATCAA	2298	False	NA	18	True	ATTAAA	-20	NA	20554630	20566119	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_20555046_20559562_20559771_20560276_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562001_20562256_20562381_20562585_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100210	chrX	+	3446	21	FSM	ENSMUSG00000031066.11	ENSMUST00000033383.3	3467	21	22	-1	-6	1	multi-exon	FALSE	canonical	3	183	junction_13	34.5694590643244	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGCTGTTTTGAGTGTTT	NA	False	NA	4	True	NA	NA	NA	20570166	20586779	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100256	chrX	+	223	1	Intergenic	novelGene_387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCCATGGAAGGAGTTACA	NA	False	NA	NA	False	NA	NA	NA	21338586	21338809	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_21338600_21338800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100266	chrX	-	3287	9	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3358	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_6	366.28779668452	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	-22	True	AATAAA	-15	NA	23227934	23085523	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100268	chrX	-	3221	8	ISM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	3387	14	3358	0	3prime_fragment	FALSE	canonical	3	772	junction_6	153.107671864193	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	-22	True	AATAAA	-15	NA	23227934	23085523	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100271	chrX	-	3322	8	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3736	0	at_least_one_novel_splicesite	TRUE	canonical	3	222	junction_7	307.654590309938	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	-22	True	AATAAA	-15	NA	23185154	23085523	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100272	chrX	-	3288	10	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_6	389.833899418461	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	-22	True	AATAAA	-15	NA	23231306	23085523	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732_23227824_23231194
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100293	chrX	+	3532	1	FSM	ENSMUSG00000079297.5	ENSMUST00000112099.2	1350	1	-1	-2181	-1	2181	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTTAACCATAATAGCCA	NA	False	NA	NA	False	NA	NA	NA	32943122	32946654	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_32943100_32946700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100309	chrX	+	1852	3	NNC	ENSMUSG00000006373.11	novel	1857	3	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	269	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGAGGCTTTCATTTT	1671	False	NA	NA	False	AATAAA	-15	NA	35861861	35869732	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_35862268_35865775_35865930_35868440
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100314	chrX	-	206	1	Intergenic	novelGene_388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAGGTTGATAAAGAAGAT	NA	False	NA	NA	False	NA	NA	NA	36030582	36030376	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_-_36030400_36030600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100319	chrX	+	1236	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5382.46789741162	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	29	True	AATAAA	-31	NA	36059301	36062460	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_36059495_36060501_36060983_36061388_36061530_36062039
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100320	chrX	+	1242	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	-2	0	-2	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	29	True	AATAAA	-31	NA	36059301	36062460	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100335	chrX	-	3314	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	26	0	18	0	multi-exon	FALSE	canonical	3	146	junction_1	34.0999348321306	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTGTTTTGATCATTT	NA	False	NA	NA	False	AATAAA	-28	NA	36127873	36112195	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100382	chrX	-	808	1	FSM	ENSMUSG00000080241.4	ENSMUST00000116499.4	451	1	-101	-256	-101	256	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTTTGTTAGCTTGAAA	NA	False	NA	-12	True	AATAAA	-2	NA	36807851	36807043	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_36807000_36807900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100392	chrX	+	1017	4	FSM	ENSMUSG00000006200.4	ENSMUST00000006362.4	1010	4	-7	0	-7	0	multi-exon	FALSE	canonical	3	92	junction_1	47.588514020367	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGCTCCATTGTCTTGG	NA	False	NA	14	True	AATAAA	-18	NA	36915779	36918734	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_36916057_36916242_36916703_36917291_36917338_36918500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100410	chrX	-	747	2	ISM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	0	38516	0	-38216	5prime_fragment	FALSE	canonical	3	600	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCTCAGCATGCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	37665073	37660666	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chrX_-_37661356_37665015
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100412	chrX	+	1081	6	FSM	ENSMUSG00000000355.14	ENSMUST00000000365.3	783	6	-200	-98	-123	98	multi-exon	FALSE	canonical	3	489	junction_1	58.4486099064811	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGACTCAATGTCCTAT	NA	False	NA	10	True	ATTAAA	-23	NA	37689331	37702401	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100422	chrX	+	450	1	FSM	ENSMUSG00000080896.6	ENSMUST00000117155.2	174	1	-30	-246	-30	246	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGTACATATATACAATG	NA	False	NA	NA	False	ATTAAA	-24	NA	38058663	38059113	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_38058700_38059100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100435	chrX	+	201	1	Intergenic	novelGene_389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTTTCCAACTTTAAAGA	NA	False	NA	NA	False	NA	NA	NA	42542422	42542623	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_42542400_42542600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100439	chrX	-	2143	2	FSM	ENSMUSG00000045284.10	ENSMUST00000115056.2	3495	2	-2	1354	-2	-1354	multi-exon	FALSE	canonical	3	16	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCCATGTTCCAGTTTGC	NA	False	NA	NA	False	NA	NA	NA	43879040	43876800	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_43877171_43877267
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100453	chrX	+	2522	15	FSM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	-15	0	-15	0	multi-exon	FALSE	canonical	3	320	junction_8	49.1840047833705	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACTACCTTCTGTATTA	NA	False	NA	20	True	AATAAA	-24	NA	47345723	47371330	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100477	chrX	-	2098	16	FSM	ENSMUSG00000036932.15	ENSMUST00000114945.9	2221	16	123	0	-10	0	multi-exon	FALSE	canonical	3	21	junction_15	394.039704711199	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602313	47563820	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47592459_47592591_47602112
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100508	chrX	+	203	1	Intergenic	novelGene_390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAGCTCTGCTTAAGTTC	NA	False	NA	NA	False	NA	NA	NA	50274854	50275057	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_50274900_50275100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100509	chrX	-	1184	8	FSM	ENSMUSG00000055780.11	ENSMUST00000069509.4	4120	8	62	2874	62	-2874	multi-exon	FALSE	canonical	3	16	junction_1	4.17475405605784	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGCAACCTGAAGGACAG	NA	False	NA	NA	False	CATAAA	-41	NA	50889959	50845709	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_50846351_50854031_50854113_50882224_50882281_50885803_50885850_50886599_50886704_50887371_50887431_50889689_50889806_50889878
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100524	chrX	-	2315	8	FSM	ENSMUSG00000055653.14	ENSMUST00000069360.14	2216	8	-99	0	-70	0	multi-exon	FALSE	canonical	3	233	junction_6	17.9398086582293	256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTTGGTCCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-17	NA	51702897	51361302	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_51361832_51403713_51403874_51454598_51454720_51476985_51477112_51485949_51486084_51517316_51518012_51671673_51671836_51702509
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100529	chrX	-	406	2	Genic_Genomic	ENSMUSG00000083621.2	novel	408	1	NA	NA	-24	52	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATACCTCGTGCTGCAAA	NA	False	NA	NA	False	AATAAA	-28	NA	51861650	51861166	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Genic_Genomic_chrX_-_51861476_51861553
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100534	chrX	+	977	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	-27	-68	-27	68	mono-exon	FALSE	NA	NA	NA	NA	NA	2343	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACGGACCACAACTGACAG	NA	False	NA	NA	False	AATAAA	-45	NA	51987437	51988414	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_51987400_51988400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100584	chrX	+	229	1	Intergenic	novelGene_391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCAGACTTTATTCCCTCC	NA	False	NA	NA	False	TTTAAA	-11	NA	53255634	53255863	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_53255600_53255900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100604	chrX	-	4120	4	FSM	ENSMUSG00000061273.4	ENSMUST00000059899.3	4234	4	122	-8	122	8	multi-exon	FALSE	canonical	3	129	junction_2	4.64279609239471	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTAGTGGGTTTTTGT	NA	False	NA	1	True	AATAAA	-22	NA	55643307	55630863	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_55634664_55636437_55636542_55640749_55640803_55643144
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100619	chrX	+	2578	8	NIC	ENSMUSG00000023092.17	novel	2770	8	NA	NA	-25	3	combination_of_known_junctions	FALSE	canonical	3	11	junction_6	57.513796037941	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGCCTCCTGTCTTTTTA	NA	False	NA	9	True	AATAAA	-15	NA	55777121	55838703	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55836598_55836799_55837203
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100627	chrX	+	2889	10	NNC	ENSMUSG00000067873.12	novel	2810	10	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	156.01313651559	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACTTGAGTTAACTTG	NA	False	NA	16	True	AATAAA	-31	NA	56098899	56112543	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_56099126_56099313_56099559_56100857_56101043_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100649	chrX	+	2163	17	NNC	ENSMUSG00000079584.3	novel	2156	17	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	151.271641013774	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTGTCTGGCCTCAGT	NA	False	NA	15	True	TATAAA	-8	NA	56454513	56534133	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468741_56478571_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100650	chrX	+	2166	17	NNC	ENSMUSG00000079584.3	novel	2156	17	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	151.271641013774	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTGTCTGGCCTCAGT	NA	False	NA	15	True	TATAAA	-8	NA	56454513	56534133	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468741_56478568_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100665	chrX	+	1582	2	FSM	ENSMUSG00000046180.12	ENSMUST00000062542.5	1572	2	-3	-7	-3	7	multi-exon	FALSE	canonical	3	101	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGTTTGTTCTTTGGAG	NA	False	NA	20	True	AATAAA	-25	NA	57956817	57965671	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_57956922_57964193
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100670	chrX	-	2830	5	FSM	ENSMUSG00000031137.18	ENSMUST00000033473.12	2499	5	-331	0	-331	0	multi-exon	FALSE	canonical	3	70	junction_2	5.62916512459885	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACTTCAATGTGTGTT	NA	False	NA	NA	False	AATAAA	-25	NA	58180127	58107504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_58109030_58112760_58112960_58171253_58171358_58177199_58177311_58179236
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100675	chrX	-	3812	28	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	828	0	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_27	79.0220750182634	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	59223621	59101315	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100705	chrX	+	5163	1	Intergenic	novelGene_392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	63977041	63982204	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_63977000_63982200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100736	chrX	+	1136	1	FSM	ENSMUSG00000071748.3	ENSMUST00000096420.3	4226	1	11	3079	11	-3079	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTATGGTTTTATTATAA	NA	False	NA	NA	False	NA	NA	NA	67864709	67865845	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_67864700_67865800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100746	chrX	-	2429	6	FSM	ENSMUSG00000073139.10	ENSMUST00000101506.10	2429	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	81.8300678235085	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520786	69503358	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69510759_69510968_69513723_69513901_69520583
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100747	chrX	-	2528	7	FSM	ENSMUSG00000073139.10	ENSMUST00000114630.3	1307	7	-15	-1206	-15	0	multi-exon	FALSE	canonical	3	188	junction_5	21.8587638158144	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520801	69503358	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510968_69513723_69513901_69520583
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100748	chrX	-	2355	7	NIC	ENSMUSG00000073139.10	novel	1307	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	74.9288551449529	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520786	69503358	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510810_69513723_69513901_69520583
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100772	chrX	+	3362	15	NNC	ENSMUSG00000031337.17	novel	3379	15	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	89.0701683952556	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCCAGGGCTATGACTG	NA	False	NA	15	True	AATAAA	-23	NA	70258631	70358900	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339960_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100789	chrX	+	1659	5	FSM	ENSMUSG00000015217.12	ENSMUST00000114582.9	1743	5	62	22	0	-22	multi-exon	FALSE	canonical	3	153	junction_1	303.596360320739	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTATTACAACGGCCTA	NA	False	NA	NA	False	AATAAA	-23	NA	70599595	70604260	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_70599797_70601658_70601814_70602038_70602179_70602703_70602879_70603272
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100802	chrX	+	240	1	Intergenic	novelGene_393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCACTCCTAAAAACAGTTA	NA	False	NA	NA	False	NA	NA	NA	71631924	71632164	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_71631900_71632200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100818	chrX	-	2615	5	NNC	ENSMUSG00000050424.10	novel	2287	2	NA	NA	-2597	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	35.979160635012	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTTCTGGCGATGTTC	NA	False	NA	0	True	AATAAA	-21	NA	72083306	72077586	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_72077934_72078765_72080775_72080892_72080952_72081548_72081672_72083229
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100829	chrX	-	1220	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-32	2	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_8	86.1506674379253	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	72126116	72117948	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125964
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100905	chrX	-	1655	9	FSM	ENSMUSG00000058147.2	ENSMUST00000080839.2	1584	9	-66	-5	-66	5	multi-exon	FALSE	canonical	3	686	junction_5	383.166718772651	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGGCATGAGTCATTTAAT	NA	False	NA	-3	True	AATAAA	-21	NA	72309062	72298140	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100929	chrX	-	1029	7	FSM	ENSMUSG00000031371.15	ENSMUST00000077243.5	1032	7	3	0	3	0	multi-exon	FALSE	canonical	3	30	junction_3	203.601462557506	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	-12	True	AATAAA	-17	NA	72502647	72480920	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72496604_72496667_72498472_72498541_72501579_72501696_72502440
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100930	chrX	-	2199	9	NIC	ENSMUSG00000031371.15	novel	1380	10	NA	NA	3	0	intron_retention	FALSE	canonical	3	498	junction_5	41.9545885452354	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	-12	True	AATAAA	-17	NA	72502647	72480920	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_-_72481172_72489415_72489531_72490533_72491663_72491797_72491957_72492416_72492509_72496604_72496667_72498472_72498541_72501579_72501696_72502440
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100937	chrX	+	2776	4	FSM	ENSMUSG00000031383.9	ENSMUST00000019701.9	2722	4	-50	-4	-50	4	multi-exon	TRUE	canonical	3	583	junction_1	9.62635271879577	1580	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTTGTTGCTTCTTGGAC	NA	False	NA	32	True	AATAAA	-26	NA	72682974	72687124	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_72683248_72683798_72684411_72684952_72685409_72685689
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100961	chrX	+	4002	13	FSM	ENSMUSG00000019558.15	ENSMUST00000114465.9	3314	13	-688	0	-53	0	multi-exon	FALSE	canonical	3	360	junction_3	45.3026857187665	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTCCTGTTTCTGCTTC	NA	False	NA	30	True	AATAAA	-20	NA	72716702	72726108	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_72717657_72719243_72719376_72720255_72720506_72720926_72721060_72722241_72722377_72722471_72722576_72722669_72722795_72723290_72723404_72723524_72723663_72723737_72723841_72723937_72724039_72724110_72724282_72724565
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100976	chrX	+	2724	13	NNC	ENSMUSG00000019558.15	novel	3314	13	NA	NA	15	-2	intron_retention	FALSE	canonical	0	0	junction_11	124.210842253538	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATCACAACCCACCAAAAAT	NA	False	NA	5	True	AATAAA	-11	NA	72716770	72724893	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_72717657_72719243_72719376_72720255_72720506_72720926_72721060_72722241_72722377_72722471_72722576_72722669_72722795_72723290_72723404_72723524_72723663_72723737_72723841_72723937_72724044_72724110_72724282_72724565
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100979	chrX	-	1262	8	FSM	ENSMUSG00000002015.6	ENSMUST00000002091.6	1219	8	-39	-4	-39	4	multi-exon	FALSE	canonical	3	2403	junction_7	231.225131040053	801	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTCTAACTGAGGCTT	NA	False	NA	-9	True	AATAAA	-21	NA	72759820	72729779	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758535_72759723
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100983	chrX	+	3671	10	FSM	ENSMUSG00000031378.15	ENSMUST00000002084.14	3648	10	-23	0	-23	0	multi-exon	TRUE	canonical	3	38	junction_7	8.3901765016235	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCTCCTGAACTTGGT	NA	False	NA	18	True	AGTAAA	-19	NA	72760179	72782140	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_72761537_72764519_72764701_72772589_72772733_72772814_72772984_72774399_72774495_72777614_72777761_72778067_72778214_72780395_72780481_72780708_72780835_72780917
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100989	chrX	+	224	1	Intergenic	novelGene_394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAGAGGTGTACTGACAT	NA	False	NA	NA	False	NA	NA	NA	72791916	72792140	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_72791900_72792100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000100998	chrX	-	1477	11	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	32	0	intron_retention	FALSE	canonical	3	1072	junction_9	145.935054048025	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830471	72822568	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101000	chrX	-	1310	12	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	-19	0	combination_of_known_junctions	TRUE	canonical	3	210	junction_11	355.941284971423	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830247	72822568	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830133
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101011	chrX	-	2352	9	NIC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	-4	0	intron_retention	FALSE	canonical	3	1120	junction_6	124.053415914275	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830507	72822568	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101027	chrX	-	1478	11	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	32	-3	intron_retention	FALSE	canonical	0	0	junction_9	429.183131075768	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGCCCTGTTCTTCC	NA	False	NA	-31	True	AATAAA	-16	NA	72830471	72822571	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826276_72826323_72830380
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101030	chrX	-	2529	8	NIC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	32	-3	intron_retention	FALSE	canonical	3	1120	junction_6	118.975044545021	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGCCCTGTTCTTCC	NA	False	NA	-31	True	AATAAA	-16	NA	72830471	72822571	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72826323_72830380
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101037	chrX	+	859	6	FSM	ENSMUSG00000002014.13	ENSMUST00000002090.3	765	6	-92	-2	-58	2	multi-exon	FALSE	canonical	3	426	junction_1	441.755135793575	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGGGGCTCCTGTGTCTAT	5374	False	NA	50	True	AATAAA	-32	NA	72830575	72834434	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_72830913_72832443_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101042	chrX	+	948	7	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_2	575.300621897418	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5385	False	NA	48	True	AATAAA	-30	NA	72830586	72834432	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_72830913_72832440_72832560_72832660_72832760_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101069	chrX	-	1021	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114387.8	979	8	-28	-14	8	0	multi-exon	FALSE	canonical	3	116	junction_1	343.561063104701	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGGGTATGCTTTTTTT	NA	False	NA	-1	True	AATAAA	-38	NA	72965522	72960478	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_72960889_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101079	chrX	-	1420	11	FSM	ENSMUSG00000031387.15	ENSMUST00000116578.8	1418	11	0	-2	0	2	multi-exon	FALSE	canonical	3	1767	junction_7	141.190120050944	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGCGCGCCTCTGTG	NA	False	NA	0	True	AATAAA	-20	NA	72974456	72965724	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101080	chrX	-	1349	11	FSM	ENSMUSG00000031387.15	ENSMUST00000114379.8	1318	11	-29	-2	-4	2	multi-exon	FALSE	canonical	3	383	junction_8	509.144390129166	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGCGCGCCTCTGTG	NA	False	NA	0	True	AATAAA	-20	NA	72974427	72965724	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973834_72973869_72974013_72974124_72974319
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101113	chrX	-	2977	14	FSM	ENSMUSG00000031392.19	ENSMUST00000114354.10	3835	14	-8	866	-8	26	multi-exon	FALSE	canonical	3	198	junction_10	56.8590076026845	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTCTTACAGTTCAGTC	NA	False	NA	NA	False	NA	NA	NA	73067532	73058385	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066271_73066454_73066559_73066671_73066804_73066971_73067140_73067215
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101130	chrX	-	1885	4	FSM	ENSMUSG00000031393.17	ENSMUST00000100750.10	10538	4	-39	8692	-18	4	multi-exon	FALSE	canonical	3	104	junction_3	52.083266666624	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGAGTTTCGTGGCTTCG	NA	False	NA	NA	False	AATAAA	-26	NA	73129314	73078889	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_73080101_73080587_73080939_73123514_73123639_73129115
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101145	chrX	+	1399	6	FSM	ENSMUSG00000001964.15	ENSMUST00000002029.13	1595	6	57	139	-8	-139	multi-exon	FALSE	canonical	3	248	junction_2	18.1592951405059	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTGATTCTTCCTACTG	NA	False	NA	21	True	AATAAA	-16	NA	73298349	73301354	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73300612
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101157	chrX	+	860	6	FSM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	-5	0	-2	0	multi-exon	FALSE	canonical	3	7516	junction_1	832.521615335001	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314460	73316741	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101163	chrX	+	2278	1	FSM	ENSMUSG00000119320.1	ENSMUST00000082806.3	137	1	-1629	-512	-1629	512	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTTTTTGTTTCTGATT	NA	False	NA	9	True	AATAAA	-19	NA	73314460	73316738	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_73314500_73316700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101174	chrX	+	1807	10	FSM	ENSMUSG00000009995.18	ENSMUST00000069722.13	1851	10	42	2	-11	1	multi-exon	FALSE	canonical	3	70	junction_7	76.3282385490455	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCTGTCTTCTGTGTAG	NA	False	NA	8	True	AATAAA	-21	NA	73326344	73333755	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332267_73332321_73332710_73332789_73332904
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101187	chrX	+	2480	8	NIC	ENSMUSG00000009995.18	novel	2368	9	NA	NA	0	1	intron_retention	FALSE	canonical	3	76	junction_6	61.4664335143954	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCTGTCTTCTGTGTAG	NA	False	NA	8	True	AATAAA	-21	NA	73326355	73333755	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73332626_73332710_73332789_73332904
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101209	chrX	+	2318	9	ISM	ENSMUSG00000019087.14	ENSMUST00000114171.10	2157	10	-16	-1	4	1	intron_retention	TRUE	canonical	3	647	junction_4	28.1954672775608	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGCTTCGTGTCACTC	NA	False	NA	15	True	AATAAA	-20	NA	73340752	73348296	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101226	chrX	+	2441	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	226	-1	-32	1	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTCTTTAGGTTCTCT	6174	False	NA	16	True	AATAAA	-17	NA	73348829	73355469	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101236	chrX	+	2672	10	NIC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	-5	0	intron_retention	FALSE	canonical	3	728	junction_6	47.3648825477846	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	6201	False	NA	15	True	AATAAA	-16	NA	73348856	73355468	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101313	chrX	+	1518	7	NNC	ENSMUSG00000031403.15	novel	610	3	NA	NA	-1793	-158	at_least_one_novel_splicesite	FALSE	canonical	3	454	junction_1	848.656143558744	24	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGAATTGTTCAGAATGG	NA	False	NA	NA	False	NA	NA	NA	74147761	74153225	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_74147807_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101319	chrX	-	1985	12	FSM	ENSMUSG00000031402.13	ENSMUST00000033775.9	2525	12	0	540	0	375	multi-exon	FALSE	canonical	3	210	junction_6	19.4626151487859	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTGACCCTGTAACTCCAT	NA	False	NA	-5	True	AATAAA	-22	NA	74174622	74153878	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_74154450_74155532_74155608_74155804_74156008_74157191_74157273_74157839_74157921_74159661_74159769_74161361_74161559_74165040_74165110_74167501_74167588_74168976_74169056_74169342_74169487_74174330
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101349	chrX	+	223	1	Intergenic	novelGene_395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATGAAGATGATTCTCAT	NA	False	NA	NA	False	NA	NA	NA	74928041	74928264	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_74928000_74928300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101365	chrX	+	2380	16	NNC	ENSMUSG00000025246.14	novel	5234	16	NA	NA	5	393	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	124.783795244237	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGTGATAAACCAAAAGG	NA	False	NA	-96	True	AATAAA	-32	NA	76554623	76703742	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_76554876_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397_76691531_76691857_76692000_76692261_76692324_76692428_76692527_76693478_76693540_76693974_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101366	chrX	+	2448	17	NIC	ENSMUSG00000025246.14	novel	5234	16	NA	NA	5	393	combination_of_known_junctions	FALSE	canonical	3	50	junction_1	145.192921228964	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGTGATAAACCAAAAGG	NA	False	NA	-96	True	AATAAA	-32	NA	76554623	76703742	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_+_76554876_76628399_76628466_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397_76691531_76691857_76692000_76692259_76692324_76692428_76692527_76693478_76693540_76693974_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101382	chrX	+	514	1	FSM	ENSMUSG00000081049.2	ENSMUST00000118723.2	402	1	-30	-82	-30	82	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGAAAGGCTGGGGAAA	NA	False	NA	NA	False	NA	NA	NA	78238622	78239136	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_78238600_78239100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101385	chrX	-	1944	4	FSM	ENSMUSG00000046942.18	ENSMUST00000052283.7	1854	4	-90	0	-90	0	multi-exon	FALSE	canonical	3	76	junction_2	116.448367194316	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78715131	78666836	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_78668390_78671446_78671527_78685326_78685395_78714888
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101386	chrX	-	1727	3	FSM	ENSMUSG00000046942.18	ENSMUST00000114016.10	1725	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	241	junction_2	42	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78679190	78666836	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_78668390_78671446_78671527_78679096
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101395	chrX	+	1880	1	FSM	ENSMUSG00000081205.5	ENSMUST00000117582.2	1068	1	-55	-757	-55	757	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAAGTAATAATGGTCAA	NA	False	NA	NA	False	AAAAAG	-28	NA	79500292	79502172	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_79500300_79502200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101435	chrX	+	206	1	Intergenic	novelGene_396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTCAGCGCTGCTTTTCC	NA	False	NA	NA	False	AAGAAA	-7	NA	87877894	87878100	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_87877900_87878100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101460	chrX	-	1550	7	ISM	ENSMUSG00000079509.11	ENSMUST00000113927.8	6933	8	2	6121	2	1530	5prime_fragment	FALSE	canonical	3	21	junction_6	36.8646171823335	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAGACCTGATTCCAGG	NA	False	NA	NA	False	AAGAAA	-2	NA	93167011	93124358	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chrX_-_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93166673
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101464	chrX	-	3642	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	9	-4	9	4	multi-exon	TRUE	canonical	3	1008	junction_2	64.9970120101527	243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCCCATGTGTTTTATA	NA	False	NA	2	True	AATAAA	-25	NA	93256306	93232308	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101491	chrX	-	2644	12	NIC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	-37	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_11	424.670839962022	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	-2	True	AATAAA	-21	NA	93585646	93579079	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93585497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101492	chrX	-	2705	13	NNC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	-20	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	443.191330641243	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	-2	True	AATAAA	-21	NA	93585629	93579079	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582208_93582888_93583460_93584154_93584856_93584931_93585497
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101516	chrX	+	195	1	Intergenic	novelGene_397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAGTATACCGAGTAATGG	NA	False	NA	NA	False	NA	NA	NA	94427760	94427955	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_94427800_94428000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101585	chrX	-	2695	2	FSM	ENSMUSG00000034403.17	ENSMUST00000167246.2	2666	2	1	-30	1	0	multi-exon	FALSE	canonical	3	379	junction_1	0	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTGACTGCGCTTACACA	NA	False	NA	NA	False	NA	NA	NA	98514340	98509343	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_98511921_98514222
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101607	chrX	+	2351	1	FSM	ENSMUSG00000051582.3	ENSMUST00000060241.3	873	1	-105	-1373	-105	1373	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCATTTCTTGTGCAGCT	NA	False	NA	12	True	AATAAA	-22	NA	99472513	99474864	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_99472500_99474900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101616	chrX	-	1072	7	FSM	ENSMUSG00000015668.14	ENSMUST00000059099.7	1041	7	-6	-25	-3	0	multi-exon	FALSE	canonical	3	137	junction_6	158.307366291724	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTGCTTGAATATAAAAT	NA	False	NA	-4	True	AATAAA	-17	NA	99669547	99666488	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669421
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101628	chrX	-	2363	12	FSM	ENSMUSG00000031297.15	ENSMUST00000073927.5	2232	12	-49	-82	-16	70	multi-exon	FALSE	canonical	3	1250	junction_11	82.5987012884915	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAAGTGTCTTGTGTCTTT	NA	False	NA	NA	False	TATAAA	-29	NA	100129027	100122745	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101635	chrX	-	2389	13	NNC	ENSMUSG00000031297.15	novel	2371	13	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_12	505.338500413337	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGTTCTTTGCTTA	NA	False	NA	NA	False	ATTAAA	-29	NA	100128978	100122809	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426_100128566_100128877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101636	chrX	-	2410	13	FSM	ENSMUSG00000031297.15	ENSMUST00000101362.8	2371	13	-22	-17	-2	6	multi-exon	FALSE	canonical	3	84	junction_12	497.596780089618	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGTTCTTTGCTTA	NA	False	NA	NA	False	ATTAAA	-29	NA	100128980	100122809	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426_100128585_100128877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101643	chrX	-	2190	12	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	158	6	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_11	409.125251083797	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGTTCTTTGCTTA	NA	False	NA	NA	False	ATTAAA	-29	NA	100128800	100122809	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128759
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101644	chrX	-	2025	12	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	3	168	junction_10	371.664893941343	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGTTCTTTGCTTA	NA	False	NA	NA	False	ATTAAA	-29	NA	100128978	100122809	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127701_100127881_100128877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101649	chrX	-	2690	11	FSM	ENSMUSG00000031297.15	ENSMUST00000138162.2	2717	11	33	-6	0	6	multi-exon	FALSE	canonical	3	1250	junction_10	85.0282306060758	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGTTCTTTGCTTA	NA	False	NA	NA	False	ATTAAA	-29	NA	100128978	100122809	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_100123199_100123305_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101672	chrX	+	201	1	Intergenic	novelGene_398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGATAAGAAGAGGGGA	NA	False	NA	NA	False	NA	NA	NA	100176774	100176975	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_100176800_100177000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101738	chrX	+	5355	22	FSM	ENSMUSG00000034160.14	ENSMUST00000044475.5	5384	22	29	0	-1	0	multi-exon	FALSE	canonical	3	202	junction_4	118.587682955494	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTGGTGTAGTTTGT	NA	False	NA	15	True	AATAAA	-20	NA	100683698	100727957	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101755	chrX	-	2275	6	NIC	ENSMUSG00000045010.15	novel	1190	7	NA	NA	-33	1	intron_retention	FALSE	canonical	3	117	junction_2	83.8035798758024	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTACTTTTGCAACTGTT	NA	False	NA	NA	False	NA	NA	NA	100838062	100833952	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_-_100834130_100834212_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101762	chrX	-	2067	7	NNC	ENSMUSG00000045010.15	novel	1190	7	NA	NA	-22	-1	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	110.674322024377	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTACTTTTGCAACTG	NA	False	NA	NA	False	NA	NA	NA	100838051	100833954	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_100834130_100834212_100834255_100834449_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101771	chrX	+	2043	7	FSM	ENSMUSG00000046774.18	ENSMUST00000163399.8	1991	7	-47	-5	-47	1	multi-exon	FALSE	canonical	3	67	junction_5	79.7050116924205	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTACTTTTGCAACTGTT	NA	False	NA	NA	False	NA	NA	NA	100838214	100842249	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101772	chrX	+	2228	6	NIC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	-47	1	intron_retention	FALSE	canonical	3	236	junction_4	22.2656686403081	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTACTTTTGCAACTGTT	NA	False	NA	NA	False	NA	NA	NA	100838214	100842249	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841990_100842072
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101774	chrX	+	2052	7	NIC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	-47	1	intron_retention	FALSE	canonical	3	47	junction_5	86.9329243344162	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTACTTTTGCAACTGTT	NA	False	NA	NA	False	NA	NA	NA	100838214	100842249	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841772_100841947_100841990_100842072
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101854	chrX	+	821	7	NNC	ENSMUSG00000031329.5	novel	812	7	NA	NA	1	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	10.5619863451699	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCGTTTCTGTGTCACTGT	NA	False	NA	7	True	AATAAA	-16	NA	102458073	102468192	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_102458253_102459640_102459681_102460356_102460394_102461814_102461897_102464105_102464207_102465593_102465653_102467869
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101880	chrX	-	2893	1	FSM	ENSMUSG00000083327.2	ENSMUST00000120233.2	2406	1	-272	-215	-272	215	mono-exon	FALSE	NA	NA	NA	NA	NA	367	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGAATTACCAGCAAGGA	NA	False	NA	2	True	AATAAA	-25	NA	103392112	103389219	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_103389200_103392100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101889	chrX	-	869	6	FSM	ENSMUSG00000087174.8	ENSMUST00000140954.8	3287	6	16	2402	0	0	multi-exon	FALSE	canonical	3	59	junction_2	25.9183332797462	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113714	104087408	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113216_104113282_104113605
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101902	chrX	+	3545	1	FSM	ENSMUSG00000031227.9	ENSMUST00000033578.7	3550	1	-10	15	-10	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGCTAATCCACTAATTT	NA	False	NA	NA	False	AATAAA	-17	NA	104163973	104167518	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_104164000_104167500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101908	chrX	-	3089	10	FSM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	20	1415	20	979	multi-exon	FALSE	canonical	3	195	junction_8	15.5404688745065	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTTTGCCAGGGCTAAAG	NA	False	NA	NA	False	NA	NA	NA	105055485	105013104	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101924	chrX	+	1825	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	0	0	0	0	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	512	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCCTGTCATACTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	105230705	105247305	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101953	chrX	-	4035	15	FSM	ENSMUSG00000025531.15	ENSMUST00000026607.15	4868	15	-3	836	-3	-834	multi-exon	TRUE	canonical	3	145	junction_7	16.3001189428489	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTTCCAGGTCATTTAC	NA	False	NA	NA	False	NA	NA	NA	112095217	111951125	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_111953333_111957032_111957194_111962758_111962858_111974543_111974641_111979275_111979340_111981613_111981719_111989834_111989913_112019872_112020099_112021625_112021747_112022245_112022363_112025712_112026128_112049032_112049158_112050410_112050484_112069200_112069268_112095137
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101959	chrX	-	3117	2	Intergenic	novelGene_399	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	91	junction_1	0	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGGAAAGCTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	116231727	116226546	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_-_116227411_116229474
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101966	chrX	-	5153	1	Intergenic	novelGene_400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	247	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCTTGCAATTTGCAAAA	NA	False	NA	NA	False	NA	NA	NA	116231728	116226575	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_-_116226600_116231700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000101979	chrX	+	4540	14	FSM	ENSMUSG00000031256.12	ENSMUST00000033609.9	4502	14	-35	-3	-25	3	multi-exon	FALSE	canonical	3	451	junction_8	78.010695670871	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTACTTAGAAATCTTTTG	NA	False	NA	15	True	AATAAA	-15	NA	132959910	132987571	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102012	chrX	+	212	1	Intergenic	novelGene_401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGTCTCACTAGCTGGTC	NA	False	NA	NA	False	NA	NA	NA	133206912	133207124	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_133206900_133207100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102018	chrX	+	3173	23	FSM	ENSMUSG00000031262.13	ENSMUST00000081064.12	3227	23	58	-4	-13	4	multi-exon	FALSE	canonical	3	156	junction_9	42.2862392872416	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCGAATTTTTTTTTTTT	NA	False	NA	10	True	AATAAA	-21	NA	133208890	133263392	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_133208978_133209314_133209383_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102041	chrX	+	496	5	NNC	ENSMUSG00000079435.10	novel	483	5	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5286.05620358883	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTCTCCTGTTGAGTGG	NA	False	NA	81	True	ATTAAA	-22	NA	133486399	133488811	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_133486469_133486826_133486933_133487259_133487332_133488199_133488323_133488685
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102055	chrX	+	2393	3	FSM	ENSMUSG00000045427.14	ENSMUST00000074950.11	2426	3	39	-6	-7	0	multi-exon	FALSE	canonical	3	597	junction_2	148.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	AATAAA	-25	NA	133501966	133507809	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_133502083_133503440_133503512_133505603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102057	chrX	+	2438	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	-68	-6	-7	0	multi-exon	FALSE	canonical	3	164	junction_3	339.283886377699	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	AATAAA	-25	NA	133501966	133507809	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102069	chrX	+	2175	4	FSM	ENSMUSG00000033460.15	ENSMUST00000113198.8	2085	4	-81	-9	-31	0	multi-exon	FALSE	canonical	3	131	junction_3	26.0895892391327	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618680	133622666	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_133618800_133619668_133619742_133620375_133620475_133620782
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102088	chrX	-	3485	6	FSM	ENSMUSG00000033436.14	ENSMUST00000113193.9	3666	6	183	-2	-42	0	multi-exon	FALSE	canonical	3	17	junction_5	6.60302960768767	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTGTTCTGGTGCTTTA	NA	False	NA	-1	True	AATAAA	-21	NA	133709787	133704893	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_133707763_133708010_133708077_133708202_133708263_133708369_133708475_133708983_133709249_133709667
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102095	chrX	-	3830	5	FSM	ENSMUSG00000079432.2	ENSMUST00000113183.2	3698	5	29	-161	29	161	multi-exon	FALSE	canonical	3	86	junction_3	56.4933624419719	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGTTCTTCGTGAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	134078352	134068211	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_134070935_134071511_134072097_134073399_134073700_134077932_134078052_134078249
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102098	chrX	+	3833	5	FSM	ENSMUSG00000067360.13	ENSMUST00000118821.8	3698	5	26	-161	17	161	multi-exon	FALSE	canonical	3	77	junction_4	43.9964487203229	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGTTCTTCGTGAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	134203081	134213562	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_134203188_134203385_134203513_134208081_134208382_134209685_134210271_134210847
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102111	chrX	+	3833	5	FSM	ENSMUSG00000054994.3	ENSMUST00000068340.3	3698	5	26	-161	26	161	multi-exon	FALSE	canonical	3	112	junction_2	53.6516542149448	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGTTCTTCGTGAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	134395362	134405504	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_134395469_134395666_134395786_134400016_134400317_134401619_134402205_134402781
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102127	chrX	+	2802	5	NNC	ENSMUSG00000072964.15	novel	2823	5	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	89.3168517134365	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGTTTGTGTATATGA	NA	False	NA	10	True	AATAAA	-21	NA	134786616	134791830	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_+_134786841_134787593_134787676_134788009_134788067_134789120_134789229_134789499
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102148	chrX	+	861	3	FSM	ENSMUSG00000047844.4	ENSMUST00000116527.2	837	3	-20	-4	-20	4	multi-exon	FALSE	canonical	3	2369	junction_2	964	950	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCAGTCATCTTCTACTT	NA	False	NA	NA	False	AATAAA	-21	NA	135039724	135041196	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_135039916_135040271_135040349_135040603
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102162	chrX	-	889	3	FSM	ENSMUSG00000050071.9	ENSMUST00000058125.9	866	3	-21	-2	-21	2	multi-exon	FALSE	canonical	3	4595	junction_1	588.5	1163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTACTCATCTTTTCTT	NA	False	NA	0	True	AATAAA	-19	NA	135116283	135114718	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_135115333_135115652_135115730_135116085
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102166	chrX	-	769	3	FSM	ENSMUSG00000050071.9	ENSMUST00000113118.2	754	3	26	-41	-15	0	multi-exon	FALSE	canonical	3	367	junction_1	2702.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTGTACTCATCTTTTC	NA	False	NA	-2	True	AATAAA	-17	NA	135116207	135114720	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_135115333_135115694_135115730_135116085
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102199	chrX	-	1794	4	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1484.46091973559	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	AATAAA	-34	NA	135642027	135633690	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_135635251_135636296_135636372_135640553_135640644_135641958
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102200	chrX	-	1821	4	FSM	ENSMUSG00000031422.17	ENSMUST00000113097.8	1825	4	4	0	0	0	multi-exon	TRUE	canonical	3	47	junction_3	1449.75867723639	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	AATAAA	-34	NA	135644435	135633690	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135644341
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102204	chrX	-	1870	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	0	-11	0	0	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	AATAAA	-34	NA	135642101	135633690	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102227	chrX	+	435	1	ISM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	178	3874	178	-3874	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAATTGGAGAACCTGAT	NA	False	NA	NA	False	NA	NA	NA	138234609	138235044	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chrX_+_138234600_138235000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102262	chrX	-	2199	4	NNC	ENSMUSG00000031431.14	novel	1552	4	NA	NA	1211	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	116.190456674471	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139500197	139440276	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_139441857_139442853_139442906_139498876_139499308_139500061
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102267	chrX	-	2145	4	NNC	ENSMUSG00000031431.14	novel	1552	4	NA	NA	1178	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	110.816164083685	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139500230	139440276	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_chrX_-_139441857_139442853_139442906_139498876_139499308_139500148
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102280	chrX	+	2135	13	FSM	ENSMUSG00000079418.6	ENSMUST00000112971.2	2202	13	-9	76	-9	-1	multi-exon	FALSE	canonical	2	18	junction_1	12.4707992259251	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTTGGTTGAGAACTAT	NA	False	NA	NA	False	AATAAA	-15	NA	139857646	139947190	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_139857721_139887027_139887139_139888914_139888987_139890906_139891006_139893565_139893668_139893817_139893891_139895351_139895432_139896010_139896190_139896311_139896391_139941722_139941869_139943027_139943085_139945462_139945572_139946236
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102295	chrX	+	2464	4	FSM	ENSMUSG00000042271.14	ENSMUST00000112914.8	2484	4	20	0	20	0	multi-exon	FALSE	canonical	3	263	junction_3	9.93310961716756	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141011192	141022688	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_141011378_141012519_141012607_141019779_141019925_141020641
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102317	chrX	+	4087	27	NIC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	548	junction_3	189.502244292029	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143100995	143157446	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102338	chrX	+	3860	25	NIC	ENSMUSG00000041718.17	novel	2996	19	NA	NA	-59	0	combination_of_known_junctions	TRUE	canonical	3	134	junction_1	227.828696459765	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143118805	143157446	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_+_143118899_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102344	chrX	+	3958	24	ISM	ENSMUSG00000041718.17	ENSMUST00000154827.8	4168	27	17898	0	52	0	3prime_fragment	FALSE	canonical	3	957	junction_21	118.352985224418	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143118916	143157446	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102350	chrX	+	3850	23	NIC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	91	0	combination_of_known_junctions	FALSE	canonical	3	128	junction_18	237.652139178671	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143118955	143157446	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102354	chrX	+	2042	7	FSM	ENSMUSG00000095872.8	ENSMUST00000178833.2	1350	7	-93	-599	-93	-2	multi-exon	TRUE	canonical	0	0	junction_3	6.15539510420646	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTTTGTTTGTGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	146572630	146616450	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_146572740_146589721_146589848_146590566_146590647_146594315_146595275_146608125_146608208_146609013_146609064_146615814
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102369	chrX	+	1994	7	FSM	ENSMUSG00000072923.7	ENSMUST00000101181.5	1977	7	-17	0	-17	0	multi-exon	FALSE	canonical	0	0	junction_1	5.06622805119022	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	148377548	148419760	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_148377658_148394767_148394894_148395612_148395693_148399354_148400266_148411437_148411520_148412325_148412376_148419124
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102374	chrX	+	2046	7	FSM	ENSMUSG00000094378.8	ENSMUST00000101180.8	2029	7	-17	0	-17	0	multi-exon	TRUE	canonical	1	1	junction_6	4.6785562825394	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTTGTGTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	148567451	148609690	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_148567561_148582582_148582709_148583428_148583509_148587159_148588119_148601122_148601205_148602010_148602061_148609050
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102387	chrX	-	1923	6	FSM	ENSMUSG00000025269.17	ENSMUST00000026303.16	1884	6	-36	-3	-36	2	multi-exon	FALSE	canonical	3	78	junction_1	8.28009661779378	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTGAGTGGATATTTT	NA	False	NA	-1	True	AATAAA	-24	NA	149371181	149354500	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370918
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102409	chrX	-	2103	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	4	0	4	0	multi-exon	FALSE	canonical	3	63	junction_12	38.0929965858409	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149596699	149589416	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149596611
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102411	chrX	-	2178	13	NIC	ENSMUSG00000025268.16	novel	2107	13	NA	NA	-15	0	intron_retention	FALSE	canonical	3	35	junction_12	45.1259810604342	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149595979	149589416	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149595816
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102436	chrX	-	4812	16	FSM	ENSMUSG00000025266.12	ENSMUST00000112691.9	4869	16	57	0	57	0	multi-exon	FALSE	canonical	3	473	junction_8	38.4461528201024	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	-16	True	NA	NA	NA	149800261	149766136	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102459	chrX	-	3771	5	FSM	ENSMUSG00000025264.13	ENSMUST00000112683.9	3796	5	25	0	5	0	multi-exon	FALSE	canonical	3	302	junction_1	26.3201443765037	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCATTTTCCTTGTTTCA	NA	False	NA	-1	True	AAAAAG	-18	NA	149879514	149870089	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_149873411_149873600_149873778_149874671_149874764_149879160_149879252_149879424
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102468	chrX	-	1400	5	FSM	ENSMUSG00000025264.13	ENSMUST00000026295.10	3804	5	18	2386	-2	0	multi-exon	FALSE	canonical	3	72	junction_1	125.415310070182	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATCCATTGTCCTCCCC	NA	False	NA	-3	True	AATAAA	-21	NA	149879521	149872476	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_149873411_149873591_149873778_149874671_149874764_149879160_149879252_149879424
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102499	chrX	-	1510	8	FSM	ENSMUSG00000025257.6	ENSMUST00000026288.5	1508	8	0	-2	0	2	multi-exon	FALSE	canonical	3	80	junction_7	14.6816559150582	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTGTCGTAAGAGTACA	NA	False	NA	0	True	AATAAA	-19	NA	150799291	150787575	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799158
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102516	chrX	+	228	1	Intergenic	novelGene_402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGGCATGGAGCCGCTG	NA	False	NA	NA	False	NA	NA	NA	150958989	150959217	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_150959000_150959200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102537	chrX	-	2728	7	FSM	ENSMUSG00000041096.14	ENSMUST00000044509.7	2696	7	-32	0	-32	0	multi-exon	FALSE	canonical	3	155	junction_2	16.4189930669738	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTCTTGGAGTCTTTTG	NA	False	NA	-4	True	AATAAA	-17	NA	151125453	151119850	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123194_151123298_151123377_151124535
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102539	chrX	-	2729	7	NIC	ENSMUSG00000041096.14	novel	2696	7	NA	NA	-30	0	intron_retention	FALSE	canonical	3	44	junction_2	53.7339123211155	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTCTTGGAGTCTTTTG	NA	False	NA	-4	True	AATAAA	-17	NA	151125451	151119850	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_-_151120562_151121720_151122392_151122628_151122724_151122857_151123004_151123081_151123194_151123298_151123377_151124535
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102549	chrX	-	1410	1	FSM	ENSMUSG00000047238.5	ENSMUST00000051484.5	1410	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTTCATTTATTGTC	NA	False	NA	NA	False	AATAAA	-17	NA	151820571	151819161	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_151819200_151820600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102559	chrX	-	179	1	Intergenic	novelGene_403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTTAAAAAGAATCCTA	4295	False	NA	NA	False	NA	NA	NA	152291183	152291004	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_-_152291000_152291200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102570	chrX	-	1653	4	FSM	ENSMUSG00000079350.3	ENSMUST00000070141.7	1646	4	-2	-5	-2	5	multi-exon	FALSE	canonical	3	13	junction_3	17.6823829464998	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTAGTTTCTTGTTGTG	NA	False	NA	0	True	AATAAA	-21	NA	153778848	153768765	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_153770173_153771107_153771197_153777179_153777280_153778791
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102576	chrX	-	1647	4	FSM	ENSMUSG00000079349.10	ENSMUST00000069556.4	1360	4	0	-287	0	3	multi-exon	FALSE	canonical	3	37	junction_1	7.03957069398096	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTAGTTTCTTTTTGTG	NA	False	NA	3	True	AATAAA	-21	NA	153846141	153836053	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_153837456_153838390_153838480_153844474_153844576_153846086
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102587	chrX	-	2521	5	NIC	ENSMUSG00000025283.16	novel	1352	6	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	1003	junction_1	114.726577130149	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAGCCTGAGCATTTTT	NA	False	NA	-13	True	AATAAA	-18	NA	153999344	153996133	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_-_153996664_153996892_153996934_153997028_153998681_153998780_153998833_153999098
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102625	chrX	+	3230	7	FSM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	17	1925	17	-1925	multi-exon	FALSE	canonical	3	2276	junction_6	179.511064344854	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAATGGTTTTTTGTTTT	5364	False	NA	NA	False	AATAAA	-16	NA	158155190	158170999	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102632	chrX	+	218	1	Intergenic	novelGene_404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGTCAAAAGAAAGGGTAG	NA	False	NA	NA	False	NA	NA	NA	158276480	158276698	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_158276500_158276700
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102634	chrX	+	1739	4	NIC	ENSMUSG00000044150.13	novel	578	4	NA	NA	-15	1860	intron_retention	FALSE	canonical	3	25	junction_1	277.359373777455	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGTAAAGAAGATTGCAGA	NA	False	NA	24	True	TATAAA	-45	NA	158309668	158336745	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NIC_chrX_+_158310201_158331234_158331312_158334746_158335371_158336239
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102681	chrX	+	527	1	FSM	ENSMUSG00000059461.8	ENSMUST00000118642.2	387	1	-52	-88	-52	88	mono-exon	FALSE	NA	NA	NA	NA	NA	912	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGTCTTAAAAGTAGGAA	NA	False	NA	NA	False	NA	NA	NA	161349800	161350327	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_161349800_161350300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102690	chrX	+	2298	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	-48	-6	-48	6	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	917	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGCATCATTTTTTCAC	NA	False	NA	NA	False	AATAAA	-23	NA	161543349	161562094	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102702	chrX	-	1178	8	ISM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	88	5403	88	4595	5prime_fragment	FALSE	canonical	3	89	junction_2	55.0558158339594	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTATATATTTTAGTAG	NA	False	NA	NA	False	AAAAAG	-41	NA	161612362	161567317	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_chrX_-_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102714	chrX	-	2308	9	FSM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	-12	-209	-12	209	multi-exon	FALSE	canonical	3	113	junction_1	15.2105021284637	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATTGTACGTATTTATA	NA	False	NA	-3	True	AATAAA	-21	NA	161671455	161639843	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055_161646205_161655510_161655651_161661326_161661401_161665675_161665743_161665963_161666083_161671064
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102723	chrX	+	2215	19	FSM	ENSMUSG00000031360.15	ENSMUST00000033727.14	3353	19	-33	1171	-6	18	multi-exon	TRUE	canonical	2	133	junction_1	30.7828415409191	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTTGTGTTTTCTCCA	NA	False	NA	29	True	ATTAAA	-35	NA	161684594	161814333	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_161684744_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102748	chrX	-	2004	4	FSM	ENSMUSG00000040749.12	ENSMUST00000134272.2	803	4	-18	-1183	-18	3	multi-exon	FALSE	canonical	3	72	junction_3	219.75794765049	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGTTTTTCTCACTTTTG	NA	False	NA	-15	True	AATAAA	-18	NA	162859507	162853697	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859182
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102773	chrX	+	3567	6	FSM	ENSMUSG00000031381.17	ENSMUST00000033754.15	3594	6	27	0	7	0	multi-exon	FALSE	canonical	3	160	junction_2	38.4052079801685	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTCTCAGTTTGTCTT	NA	False	NA	28	True	AATAAA	-28	NA	163202809	163216912	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_163202837_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102790	chrX	+	2857	9	FSM	ENSMUSG00000047757.18	ENSMUST00000167446.8	2953	9	97	-1	-23	1	multi-exon	TRUE	canonical	3	98	junction_5	7.72981241687015	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTTGTTTTCTTTTACT	NA	False	NA	NA	False	ATTAAA	-18	NA	163763684	163780266	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_163763807_163765432_163766450_163769555_163769709_163770700_163770794_163774540_163774685_163775726_163775891_163778339_163778768_163778882_163779118_163779765
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102799	chrX	-	3554	23	FSM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	-4	903	-4	-903	multi-exon	FALSE	canonical	3	107	junction_14	25.8655535317559	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTGTATTTTTTTAACA	NA	False	NA	NA	False	ATTAAA	-14	NA	165223704	165173931	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_165174055_165174886_165174955_165175413_165175567_165176172_165176328_165183915_165184030_165186537_165186636_165188421_165188579_165188992_165189605_165191584_165191697_165192483_165192615_165193601_165193792_165194811_165194904_165196296_165196371_165197971_165198092_165207971_165208079_165209815_165209990_165210163_165210301_165211523_165211632_165214684_165214716_165214797_165214867_165218330_165218532_165223024_165223124_165223275
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102803	chrX	+	224	1	Intergenic	novelGene_405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAGGTGAGGGGGAACA	NA	False	NA	NA	False	NA	NA	NA	165184558	165184782	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	Intergenic_chrX_+_165184600_165184800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102808	chrX	-	1286	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	169	-8	-52	8	multi-exon	FALSE	canonical	3	555	junction_2	7.5	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCTTTTTAATTTGATTA	NA	False	NA	0	True	ATTAAA	-32	NA	165262694	165240240	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_165241340_165245310_165245339_165262535
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102811	chrX	-	4040	5	FSM	ENSMUSG00000051224.14	ENSMUST00000112188.8	4050	5	10	0	10	0	multi-exon	FALSE	canonical	3	63	junction_2	3.35410196624968	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTATTCTCCAATATTT	NA	False	NA	-2	True	AATAAA	-20	NA	165293464	165282807	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_165286402_165288701_165288833_165290704_165290743_165291901_165292003_165293288
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102820	chrX	+	880	1	FSM	ENSMUSG00000067147.8	ENSMUST00000118791.2	801	1	-23	-56	-23	56	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACATCAAATATTTATCTA	NA	False	NA	NA	False	ATTAAA	-12	NA	165637183	165638063	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_+_165637200_165638100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102841	chrX	-	2417	7	FSM	ENSMUSG00000031352.11	ENSMUST00000033717.9	2320	7	-97	0	-5	0	multi-exon	FALSE	canonical	3	290	junction_6	111.381351920129	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTAGAGTGATTTTTGT	NA	False	NA	0	True	AATAAA	-25	NA	168103373	168094525	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168103110
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102888	SIRV1	-	982	3	FSM	SIRV1A	SIRV106	973	3	-5	-4	0	4	multi-exon	FALSE	canonical	2	497	junction_2	204	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATGCATACTTCCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10791	996	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV1_-_1485_7552_7809_10553
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102890	SIRV1	-	1570	6	FSM	SIRV1A	SIRV101	1561	6	-5	-4	0	4	multi-exon	FALSE	canonical	3	1499	junction_5	1975.53128044078	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATGCATACTTCCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10791	996	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102894	SIRV1	-	1366	6	FSM	SIRV1A	SIRV103	1363	6	0	-3	0	3	multi-exon	FALSE	canonical	3	1304	junction_5	2022.74937646758	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGATGCATACTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	10791	997	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10647
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102907	SIRV1	-	1303	4	FSM	SIRV1A	SIRV102	1300	4	-1	-2	-1	2	multi-exon	FALSE	canonical	3	4191	junction_1	833.052752764727	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAATCGATGCATACTT	NA	False	NA	NA	False	NA	NA	NA	10367	1004	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV1_-_1485_6337_6814_7552_7815_10282
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102912	SIRV1	-	679	5	FSM	SIRV1A	SIRV105	670	5	-8	-1	-8	1	multi-exon	FALSE	canonical	3	1547	junction_4	2187.81237769604	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGGAAGTCAAAAGACTT	NA	False	NA	NA	False	NA	NA	NA	10648	6448	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV1_-_6474_6560_6814_7552_7815_10282_10367_10593
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102915	SIRV1	+	709	3	FSM	SIRV1B	SIRV108	702	3	-1	-6	-1	6	multi-exon	FALSE	canonical	3	89	junction_1	13	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATAGGGCGTGGCGGTAT	NA	False	NA	NA	False	NA	NA	NA	10581	11612	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV1_+_10792_10897_11188_11403
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102918	SIRV1	+	471	3	FSM	SIRV1B	SIRV109	464	3	-3	-4	-3	4	multi-exon	FALSE	canonical	3	3494	junction_2	198.5	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCGGCTAATCATGTTATC	NA	False	NA	NA	False	NA	NA	NA	10708	11647	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV1_+_10792_10882_11058_11434
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102925	SIRV10001	+	1059	1	FSM	SIRV10001A	SIRV10001	9941	1	0	8882	0	-8882	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAAGGGGGTAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	0	1059	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV10001_+_0_1100
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102928	SIRV10001	+	4764	1	FSM	SIRV10001A	SIRV10001	9941	1	5177	0	5177	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	5177	9941	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV10001_+_5200_9900
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102943	SIRV12001	+	2231	1	FSM	SIRV12001A	SIRV12001	12029	1	0	9798	0	-9798	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAATAGTGAACGGAATAG	NA	False	NA	NA	False	AAAAAG	-33	NA	0	2231	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV12001_+_0_2200
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102951	SIRV12002	+	3273	1	FSM	SIRV12002A	SIRV12002	11999	1	0	8726	0	-8726	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAGTAGGTAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	0	3273	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV12002_+_0_3300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102957	SIRV12003	+	1323	1	FSM	SIRV12003A	SIRV12003	12000	1	0	10677	0	-10677	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACCTTATGTTTTCTGGC	NA	False	NA	NA	False	AATAAA	-2	NA	0	1323	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV12003_+_0_1300
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102963	SIRV2	-	2055	11	FSM	SIRV2A	SIRV201	2051	11	-1	-3	-1	3	multi-exon	FALSE	canonical	3	240	junction_6	997.649657946115	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAACGTGGCATGCGTAC	NA	False	NA	NA	False	NA	NA	NA	5908	997	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3375_3665_3826_3966_4095_4338_4480_4687_4801_5788
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102971	SIRV2	-	1972	11	FSM	SIRV2A	SIRV202	1971	11	0	-1	0	1	multi-exon	FALSE	canonical	3	173	junction_6	1003.16519576788	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCTCTATAGCTGTATCT	NA	False	NA	NA	False	NA	NA	NA	5911	1034	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4095_4338_4480_4687_4801_5788
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102977	SIRV2	+	523	1	FSM	SIRV2B	SIRV205	523	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	303	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCGTCTACCGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	1108	1631	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV2_+_1100_1600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102981	SIRV2	-	742	3	FSM	SIRV2A	SIRV204	740	3	-1	-1	-1	1	multi-exon	FALSE	canonical	3	2423	junction_1	198	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTTATCCTATATCGGAA	NA	False	NA	NA	False	NA	NA	NA	4733	3642	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV2_-_3826_3966_4480_4687
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102985	SIRV2	-	687	5	FSM	SIRV2A	SIRV203	686	5	0	-1	0	1	multi-exon	FALSE	canonical	3	2087	junction_4	259.923065540556	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGACGTGGACGTTTCA	NA	False	NA	NA	False	NA	NA	NA	5895	3664	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV2_-_3826_3966_4095_4338_4480_4687_4801_5751
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102990	SIRV2	+	425	1	FSM	SIRV2C	SIRV206	424	1	0	-1	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	327	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAACACACTTCCATCCACT	NA	False	NA	NA	False	NA	NA	NA	4033	4458	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV2_+_4000_4500
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102992	SIRV3	-	481	3	FSM	SIRV3B	SIRV308	479	3	0	-2	0	2	multi-exon	FALSE	canonical	3	5391	junction_1	17	505	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTGTATGGCGGACA	NA	False	NA	NA	False	NA	NA	NA	1982	998	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV3_-_1168_1532_1765_1902
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102995	SIRV3	+	2382	3	FSM	SIRV3A	SIRV306	2373	3	-8	-1	-8	1	multi-exon	FALSE	canonical	3	759	junction_2	1218.5	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCTAACAGTAAAAGAGTC	NA	False	NA	NA	False	NA	NA	NA	1936	8293	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV3_+_2006_4003_4081_6057
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000102996	SIRV3	+	2476	5	FSM	SIRV3A	SIRV301	2467	5	-8	-1	-8	1	multi-exon	FALSE	canonical	3	1234	junction_3	576.603416569829	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTAACGTCTCGTAAGACG	NA	False	NA	NA	False	NA	NA	NA	1936	8940	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV3_+_2006_4568_4780_6057_7989_8127_8208_8755
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103009	SIRV3	+	1809	2	FSM	SIRV3A	SIRV302	1807	2	-1	-1	-1	1	multi-exon	FALSE	canonical	3	834	junction_1	0	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTAACAGGTTCTCAACC	NA	False	NA	NA	False	NA	NA	NA	1962	7823	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV3_+_2006_6057
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103010	SIRV3	+	782	5	FSM	SIRV3A	SIRV307	779	5	-1	-2	-1	2	multi-exon	FALSE	canonical	3	1252	junction_4	794.143052289699	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAACGTCTCGTAAGACGG	NA	False	NA	NA	False	NA	NA	NA	1962	8941	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV3_+_2006_4003_4081_4574_4775_6057_6334_8755
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103011	SIRV3	+	1092	8	NNC	SIRV3A	novel	1083	8	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1147.84278593564	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTTAACGTCTCGTAAGA	NA	False	NA	NA	False	NA	NA	NA	1962	8938	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV3_+_2006_4003_4081_4568_4780_6057_6334_7270_7363_7861_7989_8124_8208_8755
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103016	SIRV3	+	778	5	NNC	SIRV3A	novel	779	5	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1138.90122486544	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTAACGTCTCGTAAGACG	NA	False	NA	NA	False	NA	NA	NA	1962	8940	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV3_+_2006_4003_4081_4574_4772_6057_6334_8755
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103035	SIRV3	-	591	3	FSM	SIRV3C	SIRV310	589	3	0	-2	0	2	multi-exon	FALSE	canonical	3	1245	junction_2	66	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGGTTTTGGGTACTGG	NA	False	NA	NA	False	NA	NA	NA	9914	8757	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV3_-_8967_9189_9325_9667
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103039	SIRV3	-	798	3	FSM	SIRV3C	SIRV309	796	3	-1	-1	-1	1	multi-exon	FALSE	canonical	3	1394	junction_2	16	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTCAAATATCTGTGTCC	NA	False	NA	NA	False	CATAAA	-22	NA	9944	8796	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV3_-_8976_9189_9299_9434
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103042	SIRV4	+	1570	3	FSM	SIRV4C	SIRV409	1567	3	-2	-1	-2	1	multi-exon	FALSE	canonical	3	1019	junction_2	11.5	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGTAACCTGTCAAGT	NA	False	NA	NA	False	NA	NA	NA	998	3404	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV4_+_1347_1678_1886_2389
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103045	SIRV4	+	1565	3	NNC	SIRV4C	novel	1567	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	509.5	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	999	3403	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV4_+_1344_1678_1886_2389
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103050	SIRV4	+	952	2	FSM	SIRV4C	SIRV410	950	2	-1	-1	-1	1	multi-exon	FALSE	canonical	3	1621	junction_1	0	1014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTATATGTTGTTGCTGC	NA	False	NA	NA	False	NA	NA	NA	1454	2772	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV4_+_1886_2251
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103058	SIRV4	-	595	4	FSM	SIRV4A	SIRV404	592	4	-1	-2	-1	2	multi-exon	FALSE	canonical	3	669	junction_3	2787.93595494747	589	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATATTTAGAGCGTATG	NA	False	NA	NA	False	NA	NA	NA	14624	8320	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV4_-_8373_8629_8991_13672_13823_14592
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103071	SIRV4001	+	3997	1	FSM	SIRV4001A	SIRV4001	3997	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	3997	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV4001_+_0_4000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103077	SIRV4002	+	3999	1	FSM	SIRV4002A	SIRV4002	3999	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	498	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	3999	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV4002_+_0_4000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103082	SIRV4003	+	4001	1	FSM	SIRV4003A	SIRV4003	4001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	TATAAA	-45	NA	0	4001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV4003_+_0_4000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103087	SIRV5	+	2033	16	NNC	SIRV5A	novel	2029	16	NA	NA	-1	1	intron_retention	FALSE	canonical	0	0	junction_1	2797.28762593735	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTACCGCCAAAAAATGGGA	NA	False	NA	NA	False	NA	NA	NA	999	10992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103089	SIRV5	+	2036	16	NNC	SIRV5A	novel	2029	16	NA	NA	0	1	intron_retention	FALSE	canonical	0	0	junction_1	3421.5192622901	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTACCGCCAAAAAATGGGA	NA	False	NA	NA	False	NA	NA	NA	1000	10992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6323_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103090	SIRV5	+	2029	16	NNC	SIRV5A	novel	2029	16	NA	NA	0	1	intron_retention	FALSE	canonical	0	0	junction_1	3425.02853840503	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTACCGCCAAAAAATGGGA	NA	False	NA	NA	False	NA	NA	NA	1000	10992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3641_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103107	SIRV5	+	2088	17	NNC	SIRV5A	novel	2085	17	NA	NA	0	1	intron_retention	FALSE	canonical	0	0	junction_1	3250.47321554878	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTACCGCCAAAAAATGGGA	NA	False	NA	NA	False	NA	NA	NA	1008	10992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103109	SIRV5	+	554	2	NNC	SIRV5A	novel	552	2	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1008	2398	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103111	SIRV5	+	2085	17	NNC	SIRV5A	novel	2085	17	NA	NA	0	1	intron_retention	FALSE	canonical	0	0	junction_1	3703.11488764442	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTACCGCCAAAAAATGGGA	NA	False	NA	NA	False	NA	NA	NA	1008	10992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3641_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103114	SIRV5	+	2092	17	NNC	SIRV5A	novel	2085	17	NA	NA	0	1	intron_retention	FALSE	canonical	0	0	junction_1	3709.87358064598	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTACCGCCAAAAAATGGGA	NA	False	NA	NA	False	NA	NA	NA	1008	10992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6323_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103132	SIRV5	+	2489	18	NNC	SIRV5A	novel	2474	18	NA	NA	1	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3312.97375067542	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACCTTGGTAACTTCGGA	NA	False	NA	NA	False	AGTAAA	-16	NA	1020	11872	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103133	SIRV5	+	2481	18	NNC	SIRV5A	novel	2474	18	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3712.23411033914	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGTAACCTTGGTAACT	NA	False	NA	NA	False	AGTAAA	-11	NA	1020	11867	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3641_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103138	SIRV5	+	541	6	FSM	SIRV5A	SIRV507	533	6	-7	-1	1	1	multi-exon	FALSE	canonical	3	3871	junction_1	2708.37786137754	907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTAAGTGGTCAAGCCACG	NA	False	NA	NA	False	NA	NA	NA	1020	3599	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV5_+_1150_1925_2034_2119_2157_2270_2316_3298_3405_3483
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103151	SIRV5	+	2481	18	NNC	SIRV5A	novel	2474	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3721.43232833737	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGTAACCTTGGTAACT	NA	False	NA	NA	False	AGTAAA	-11	NA	1027	11867	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6323_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103153	SIRV5	+	2475	18	NNC	SIRV5A	novel	2474	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3507.49258323568	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGTAACCTTGGTAACT	NA	False	NA	NA	False	AGTAAA	-11	NA	1027	11867	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8024_8286_8382_8454_8586_10858_10992_11133
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103159	SIRV5	+	2488	18	NNC	SIRV5A	novel	2474	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3714.25983815466	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGTAACCTTGGTAACT	NA	False	NA	NA	False	AGTAAA	-11	NA	1027	11867	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3641_5366_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103163	SIRV5	+	2475	18	NNC	SIRV5A	novel	2474	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3507.37371556309	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGTAACCTTGGTAACT	NA	False	NA	NA	False	AGTAAA	-11	NA	1027	11867	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8279_8382_8454_8586_10858_10992_11133
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103173	SIRV5	+	1896	17	NNC	SIRV5A	novel	1890	17	NA	NA	-3	1	intron_retention	FALSE	canonical	0	0	junction_1	3384.73373906649	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTACCGCCAAAAAATGGGA	NA	False	NA	NA	False	NA	NA	NA	1053	10992	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103179	SIRV5	+	1891	17	NNC	SIRV5A	novel	1890	17	NA	NA	-2	0	intron_retention	FALSE	canonical	0	0	junction_1	3749.78703093172	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1054	10991	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2316_3298_3405_3483_3641_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103180	SIRV5	+	1898	17	NNC	SIRV5A	novel	1890	17	NA	NA	-2	0	intron_retention	FALSE	canonical	0	0	junction_1	3766.92209403115	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1054	10991	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_1150_1985_2034_2119_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6323_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103190	SIRV5	+	536	2	ISM	SIRV5A	SIRV503	526	3	-2	134	-2	17	5prime_fragment	FALSE	canonical	3	11825	junction_1	0	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGCAAGACCTCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	8199	11008	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	ISM_SIRV5_+_8586_10858
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103194	SIRV5	+	888	4	NNC	SIRV5A	novel	885	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5079.78413802091	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGTAACCTTGGTAACT	NA	False	NA	NA	False	AGTAAA	-11	NA	8315	11867	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_8382_8454_8586_10858_10992_11309
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103195	SIRV5	+	882	4	NNC	SIRV5A	novel	885	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5079.78413802091	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGTAACCTTGGTAACT	NA	False	NA	NA	False	AGTAAA	-11	NA	8315	11867	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV5_+_8382_8454_8586_10858_10986_11309
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103201	SIRV5	+	2486	1	FSM	SIRV5A	SIRV504	2473	1	-8	-5	-8	5	mono-exon	FALSE	NA	NA	NA	NA	NA	1628	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAAAACATTTGTTACAAG	NA	False	NA	NA	False	NA	NA	NA	11125	13611	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV5_+_11100_13600
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103207	SIRV6	+	1441	9	FSM	SIRV6A	SIRV601	1435	9	-5	-1	-5	1	multi-exon	TRUE	canonical	3	2056	junction_3	7596.8547757855	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACCGGGAGTATACTTA	NA	False	NA	NA	False	NA	NA	NA	995	11827	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6_+_1187_1468_1535_1640_1736_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103213	SIRV6	+	1538	10	FSM	SIRV6A	SIRV604	1537	10	0	-1	0	1	multi-exon	TRUE	canonical	0	0	junction_4	9140.21704229429	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACTTAGTTCAATCTTC	NA	False	NA	NA	False	NA	NA	NA	1087	11838	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11034_11109_11205
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103216	SIRV6	+	1541	10	FSM	SIRV6A	SIRV612	1528	10	0	-13	0	1	multi-exon	FALSE	canonical	0	0	junction_4	7772.9807349673	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACTTAGTTCAATCTTC	NA	False	NA	NA	False	NA	NA	NA	1087	11838	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103228	SIRV6	+	1093	9	FSM	SIRV6A	SIRV605	1088	9	0	-5	0	5	multi-exon	FALSE	canonical	0	0	junction_4	8239.38325968637	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGCAATCAACTCACCATAA	NA	False	NA	NA	False	NA	NA	NA	1130	11336	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103229	SIRV6	+	576	4	FSM	SIRV6A	SIRV607	574	4	0	-2	0	2	multi-exon	FALSE	canonical	0	0	junction_3	10529.1711924538	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCAGTCAAGTCGTAGTC	NA	False	NA	NA	False	NA	NA	NA	1130	2542	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6_+_1187_1468_1736_1845_2027_2470
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103240	SIRV6	+	457	3	FSM	SIRV6A	SIRV611	454	3	-2	-1	-2	1	multi-exon	FALSE	canonical	3	2656	junction_1	12443	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGTGTTTATAGTTTAC	NA	False	NA	NA	False	NA	NA	NA	1301	1951	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6_+_1382_1468_1535_1640
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103245	SIRV6	-	281	1	FSM	SIRV6B	SIRV617	276	1	-1	-4	-1	4	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTACTTGGGCACCTTGCT	NA	False	NA	NA	False	NA	NA	NA	1821	1540	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6_-_1500_1800
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103247	SIRV6	+	546	4	FSM	SIRV6A	SIRV616	531	4	-5	-10	-5	10	multi-exon	FALSE	canonical	3	918	junction_2	7304.14215816386	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAATAGTGCAAATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	2280	10798	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6_+_2621_2740_2815_3106_3165_10724
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103261	SIRV6	+	462	5	FSM	SIRV6A	SIRV614	459	5	0	-3	0	3	multi-exon	FALSE	canonical	3	2976	junction_3	7392.30118095847	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGACTGTATCGGAGACG	NA	False	NA	NA	False	AAAAAG	-20	NA	2516	10818	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6_+_2621_2740_2829_3106_3165_7805_7924_10724
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103269	SIRV6	+	1312	6	FSM	SIRV6A	SIRV613	1311	6	0	-1	0	0	multi-exon	FALSE	canonical	3	472	junction_2	9686.74001715748	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	3105	11825	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6_+_3165_7104_7449_7805_7924_10724_10819_11031_11109_11205
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103277	SIRV6	+	1977	1	FSM	SIRV6A	SIRV603	1969	1	-6	-2	-6	2	mono-exon	FALSE	NA	NA	NA	NA	NA	413	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAGATTTCGACCGAATA	NA	False	NA	NA	False	ATTAAA	-28	NA	8993	10970	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6_+_9000_11000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103278	SIRV6	+	785	3	FSM	SIRV6A	SIRV615	783	3	-1	-1	-1	0	multi-exon	FALSE	canonical	3	18822	junction_2	2138	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	10236	11331	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6_+_10819_11031_11109_11205
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103286	SIRV6001	+	6000	1	FSM	SIRV6001A	SIRV6001	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6001_+_0_6000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103292	SIRV6002	+	6000	1	FSM	SIRV6002A	SIRV6002	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6002_+_0_6000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103297	SIRV6003	+	6000	1	FSM	SIRV6003A	SIRV6003	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV6003_+_0_6000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103300	SIRV7	-	2249	6	FSM	SIRV7A	SIRV702	2247	6	0	-2	0	2	multi-exon	FALSE	canonical	3	229	junction_3	1351.00954844886	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTTAATATGAATCAACTC	NA	False	NA	NA	False	TATAAA	-24	NA	114916	998	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103301	SIRV7	-	2539	5	FSM	SIRV7A	SIRV703	2498	5	-39	-2	0	2	multi-exon	FALSE	canonical	3	1087	junction_2	1651.92015167199	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTTAATATGAATCAACTC	NA	False	NA	NA	False	TATAAA	-24	NA	147957	998	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103313	SIRV7	-	2495	5	NNC	SIRV7A	novel	2498	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1334.65969445398	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	147918	1000	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147611
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103314	SIRV7	-	2243	6	NNC	SIRV7A	novel	2247	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1373.66872280037	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	114916	1000	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43074_114680
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103322	SIRV7	-	2466	5	FSM	SIRV7A	SIRV701	2462	5	-2	-2	0	-1	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	TATAAA	-21	NA	147925	1001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103324	SIRV7	-	2463	5	NNC	SIRV7A	novel	2462	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1290.30122452085	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	TATAAA	-21	NA	147925	1001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147611
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103330	SIRV7	-	2469	5	NNC	SIRV7A	novel	2462	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1838.52148478064	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	TATAAA	-21	NA	147925	1001	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV7_-_2676_2993_3115_43028_43078_114680_114989_147608
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103345	SIRV7	-	953	5	NNC	SIRV7A	novel	949	5	NA	NA	-1	1	intron_retention	FALSE	canonical	0	0	junction_3	1984.06911421956	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGAGATCGACGAAGTTA	NA	False	NA	NA	False	NA	NA	NA	147958	56030	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV7_-_56098_70883_70988_78841_78966_114680_114989_147608
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103347	SIRV7	-	948	5	NNC	SIRV7A	novel	949	5	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_3	2066.85127367694	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAGATCGACGAAGTT	NA	False	NA	NA	False	NA	NA	NA	147957	56031	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV7_-_56098_70883_70988_78841_78966_114680_114989_147611
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103350	SIRV7	-	922	5	NNC	SIRV7A	novel	949	5	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_3	1736.72714825905	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAGAGATCGACGAAGT	NA	False	NA	NA	False	NA	NA	NA	147957	56032	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV7_-_56098_70883_70988_78841_78966_114680_114961_147608
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103351	SIRV7	-	919	5	NNC	SIRV7A	novel	949	5	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_3	2066.85127367694	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAGAGATCGACGAAGT	NA	False	NA	NA	False	NA	NA	NA	147957	56032	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	NNC_SIRV7_-_56098_70883_70988_78841_78966_114680_114961_147611
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103359	SIRV8001	+	2443	1	FSM	SIRV8001A	SIRV8001	8001	1	0	5558	0	-5558	mono-exon	FALSE	NA	NA	NA	NA	NA	283	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAGGAGAAGGAAGAATA	NA	False	NA	NA	False	NA	NA	NA	0	2443	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV8001_+_0_2400
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103367	SIRV8002	+	3042	1	FSM	SIRV8002A	SIRV8002	8000	1	0	4958	0	-4958	mono-exon	FALSE	NA	NA	NA	NA	NA	246	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAACCTCTAAAGTGTAGAA	NA	False	NA	NA	False	AAAAAG	-19	NA	0	3042	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV8002_+_0_3000
ONT_R2C2_Mouse_MpreCap_0+_F121-9_Total_SMARTMMLV.NAM_TM_000000103378	SIRV8003	+	2893	1	FSM	SIRV8003A	SIRV8003	8000	1	0	5107	0	-5107	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGTTCAAGTCGTATAG	NA	False	NA	NA	False	NA	NA	NA	0	2893	ES_R2C2_ONT	iso_detect_ref_crg_R2C2_ONT	FSM_SIRV8003_+_0_2900
