isoform	chrom	strand	length	exons	structural_category	associated_gene	associated_transcript	ref_length	ref_exons	diff_to_TSS	diff_to_TTS	diff_to_gene_TSS	diff_to_gene_TTS	subcategory	RTS_stage	all_canonical	min_sample_cov	min_cov	min_cov_pos	sd_cov	FL	n_indels	n_indels_junc	bite	iso_exp	gene_exp	ratio_exp	FSM_class	coding	ORF_length	CDS_length	CDS_start	CDS_end	CDS_genomic_start	CDS_genomic_end	predicted_NMD	perc_A_downstream_TTS	seq_A_downstream_TTS	dist_to_cage_peak	within_cage_peak	pos_cage_peak	dist_to_polya_site	within_polya_site	polyA_motif	polyA_dist	ORF_seq	TSS_genomic_coord	TTS_genomic_coord	experiment_id	entry_id	LRGASP_id
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000002	chr1	-	177	1	Intergenic	novelGene_1	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTTTTCACTGGGAAGG	NA	False	NA	-1	True	NA	NA	NA	4835416	4835239	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_-_4835200_4835400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000030	chr1	+	1923	4	ISM	ENSMUSG00000033813.16	ENSMUST00000165720.3	2854	10	33882	0	33882	0	3prime_fragment	FALSE	canonical	3	1602	junction_3	172.83711021267	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTTTTTGTCTTTTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	4962142	4968132	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_+_4962293_4963639_4963787_4965156_4965229_4966578
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000047	chr1	+	198	1	Intergenic	novelGene_2	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTGCAGGAAAACACAAC	6234	False	NA	NA	False	NA	NA	NA	9456825	9457023	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_+_9456800_9457000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000064	chr1	-	443	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182742.2	400	4	-37	-6	-36	4	multi-exon	FALSE	canonical	3	144	junction_1	223.143202649977	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGCAGTAATTTCTTTA	NA	False	NA	-9	True	AATAAA	-18	NA	10014379	10012243	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_10012375_10012547_10012617_10012834_10012943_10014244
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000068	chr1	-	1711	3	FSM	ENSMUSG00000098234.8	ENSMUST00000182819.8	816	3	-895	0	0	0	multi-exon	TRUE	canonical	3	538	junction_1	75	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTGGGCAGTAATTTC	NA	False	NA	-13	True	AATAAA	-14	NA	10014343	10012247	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_10012381_10012547_10012617_10012834
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000069	chr1	-	1929	2	ISM	ENSMUSG00000098234.8	ENSMUST00000182580.8	473	4	0	64	0	0	intron_retention	FALSE	canonical	3	538	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTGGGCAGTAATTTC	NA	False	NA	-13	True	AATAAA	-14	NA	10014343	10012247	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_-_10012381_10012547
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000070	chr1	-	383	4	NNC	ENSMUSG00000098234.8	novel	473	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_3	291.699998095456	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTGGGCAGTAATTTC	NA	False	NA	-13	True	AATAAA	-14	NA	10014343	10012247	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_-_10012381_10012547_10012617_10012834_10012917_10014244
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000086	chr1	-	1315	8	NIC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	-15	18	combination_of_known_junctions	FALSE	canonical	3	100	junction_7	313.343653036022	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTGGTTTTGTAGTTG	NA	False	NA	-7	True	AATAAA	-20	NA	10108185	10095049	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107886
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000140	chr1	-	941	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_5	2412.63137235859	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	-5	True	AATAAA	-25	NA	16174626	16171518	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173597_16173733_16173909_16174588
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000143	chr1	-	642	6	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	41	junction_4	2531.63136337027	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	-5	True	AATAAA	-25	NA	16174626	16171518	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16172996_16173769_16173909_16174588
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000158	chr1	-	1578	6	ISM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	259	6	-1	5	intron_retention	FALSE	canonical	3	5309	junction_1	712.412801681722	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	-11	True	AATAAA	-19	NA	16174627	16171524	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000225	chr1	-	349	1	FSM	ENSMUSG00000101939.2	ENSMUST00000188299.2	345	1	0	-4	0	4	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGTAATTAGTTTAAAAAAA	NA	False	NA	NA	False	AGTAAA	-1	NA	24652200	24651851	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_24651900_24652200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000228	chr1	-	1628	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-843	-2	-843	2	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653895	24652267	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_24652300_24653900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000231	chr1	-	688	1	FSM	ENSMUSG00000102070.2	ENSMUST00000188231.2	681	1	-1	-6	-1	6	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	NA	False	NA	NA	False	ACTAAA	-38	NA	24654647	24653959	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_24654000_24654600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000246	chr1	-	1621	10	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	-14681	2	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_9	101.707763399863	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCAAGTGGGAGTCTT	2985	False	NA	0	True	AATAAA	-20	NA	33677086	33492888	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33676802
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000249	chr1	-	1984	14	FSM	ENSMUSG00000026134.12	ENSMUST00000027312.11	1975	14	-7	-2	-7	2	multi-exon	FALSE	canonical	3	132	junction_10	82.0868352460372	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCAAGTGGGAGTCTT	NA	False	NA	0	True	AATAAA	-20	NA	33708883	33492888	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33701326_33701448_33702857_33702938_33706125_33706230_33707938_33708102_33708704
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000261	chr1	+	200	1	Intergenic	novelGene_3	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGCTTGAAGCAACAAG	NA	False	NA	NA	False	NA	NA	NA	33757020	33757220	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_+_33757000_33757200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000267	chr1	-	808	2	NNC	ENSMUSG00000042215.9	novel	1860	3	NA	NA	2384	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGCATTGGCCATTAT	NA	False	NA	-5	True	NA	NA	NA	33785416	33784564	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_-_33785227_33785270
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000281	chr1	+	882	9	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	19	5151	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_8	171.809305626907	35	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATACCAGTGGCCTCTCT	5632	False	NA	NA	False	NA	NA	NA	34478950	34493588	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34493524
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000300	chr1	+	2378	1	FSM	ENSMUSG00000045216.8	ENSMUST00000194670.2	3291	1	2379	-1466	2379	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGCTGTGGTCTGTGG	NA	False	NA	20	True	AATAAA	-15	NA	36143149	36145527	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_36143100_36145500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000312	chr1	-	1639	10	FSM	ENSMUSG00000046337.18	ENSMUST00000114981.3	1659	10	36	-16	36	16	multi-exon	FALSE	canonical	3	94	junction_7	27.7328525599353	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCTAATTTTCTTAACATG	NA	False	NA	NA	False	AATACA	-43	NA	36722228	36639040	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000334	chr1	-	3809	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	52	2	-51	-2	multi-exon	FALSE	canonical	3	395	junction_2	27.5	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTTCTGTTTCAAGAT	6324	False	NA	-5	True	NA	NA	NA	37469132	37456166	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_37459709_37467422_37467507_37468949
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000344	chr1	+	1109	6	NIC	ENSMUSG00000026111.16	novel	1179	6	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	188.928134485047	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469262	37478068	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_37469419_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000356	chr1	+	668	1	ISM	ENSMUSG00000037216.6	ENSMUST00000041621.5	1485	2	3355	0	2999	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCCTTTTCCTTAAGG	NA	False	NA	15	True	ATTAAA	-15	NA	37914641	37915309	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_+_37914600_37915300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000399	chr1	+	465	5	NNC	ENSMUSG00000073702.12	novel	1049	5	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	5036.24277115391	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39406989	39410447	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_+_39407016_39407201_39407337_39409094_39409221_39410034_39410148_39410382
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000405	chr1	+	504	5	NNC	ENSMUSG00000073702.12	novel	487	5	NA	NA	-6	4	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	5012.72253246676	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTGGTTTTCCTTTCTG	NA	False	NA	30	True	AATAAA	-19	NA	39407003	39410451	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_+_39407093_39407229_39407337_39409094_39409221_39410034_39410148_39410382
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000427	chr1	+	230	1	Intergenic	novelGene_4	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAAGCTGAGCAAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	43160577	43160807	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_+_43160600_43160800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000431	chr1	+	725	1	FSM	ENSMUSG00000094497.2	ENSMUST00000178557.2	483	1	-104	-138	-104	138	mono-exon	FALSE	NA	NA	NA	NA	NA	1428	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGGCAGATGTGTTATTC	NA	False	NA	NA	False	AATAAA	-38	NA	43228211	43228936	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_43228200_43228900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000440	chr1	-	1211	6	FSM	ENSMUSG00000026049.12	ENSMUST00000150911.8	960	6	-3	-248	-3	0	multi-exon	FALSE	canonical	3	213	junction_5	82.045353311446	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	0	True	ATTAAA	-20	NA	44141604	44125772	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141487
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000442	chr1	-	1269	7	NIC	ENSMUSG00000026049.12	novel	1272	8	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	144	junction_6	127.50348579113	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	0	True	ATTAAA	-20	NA	44141604	44125772	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059_44141118_44141487
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000465	chr1	-	1693	1	ISM	ENSMUSG00000025986.7	ENSMUST00000027131.6	5498	10	44810	0	26663	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTGTGTTTTCATTGTC	5669	False	NA	NA	False	AATAAA	-16	NA	46848396	46846703	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_-_46846700_46848400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000468	chr1	+	201	1	Intergenic	novelGene_5	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCATGAAATGCTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	46922011	46922212	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_+_46922000_46922200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000471	chr1	-	2362	6	FSM	ENSMUSG00000026107.12	ENSMUST00000185534.2	708	6	0	-1654	0	0	multi-exon	FALSE	canonical	1	1	junction_5	22.105203007437	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATAGGAGTAACAGAACT	NA	False	NA	-1	True	AATAAA	-32	NA	51517558	51508646	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51517459
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000481	chr1	+	202	1	Intergenic	novelGene_6	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACAAGCCATCACTGCTG	NA	False	NA	NA	False	NA	NA	NA	52730564	52730766	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_+_52730600_52730800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000515	chr1	-	4376	25	FSM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	-35	1854	-35	-1850	multi-exon	TRUE	canonical	2	1032	junction_2	157.733865172392	430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGTTTTTTGAAT	NA	False	NA	0	True	AATAAA	-22	NA	55066675	55026181	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000532	chr1	-	2312	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	113	-2	113	2	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	1119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGTGTTACCCTTTCCA	4568	False	NA	-4	True	AATAAA	-18	NA	55127070	55116991	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000533	chr1	-	2434	12	NIC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	2	335	junction_11	1793.34097000842	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGTGTTACCCTTTCCA	4236	False	NA	-4	True	AATAAA	-18	NA	55127402	55116991	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000559	chr1	+	205	1	FSM	ENSMUSG00000100215.2	ENSMUST00000162574.2	396	1	328	-137	328	137	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAGTCATGCCTGATACT	NA	False	NA	NA	False	NA	NA	NA	55374887	55375092	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_55374900_55375100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000587	chr1	-	1661	12	FSM	ENSMUSG00000026034.18	ENSMUST00000148330.8	1705	12	44	0	44	0	multi-exon	FALSE	canonical	3	65	junction_9	47.751422461613	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463181	58451158	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000654	chr1	+	208	1	Intergenic	novelGene_7	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATCAAACCTCTCTTTCC	-7	True	NA	NA	False	NA	NA	NA	59698060	59698268	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_+_59698100_59698300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000657	chr1	+	2034	15	FSM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-57	7530	-19	4	multi-exon	FALSE	canonical	3	1434	junction_3	210.570471503931	381	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTGATCTCTTTATAT	NA	False	NA	NA	False	AATAAA	-25	NA	59724110	59750673	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000705	chr1	+	836	6	NIC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_1	1264.85610248755	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63216287	63218815	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_63216451_63216881_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000709	chr1	+	2297	12	FSM	ENSMUSG00000025962.16	ENSMUST00000027103.7	4486	12	8	2181	8	9	multi-exon	FALSE	canonical	3	308	junction_4	54.5943720043143	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTGGCTGATCACTGCA	NA	False	NA	14	True	AATAAA	-25	NA	63769780	63791633	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000734	chr1	+	2747	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	-43	-12	-43	12	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGATCTAGGATGCCTG	NA	False	NA	17	True	ATTAAA	-24	NA	66739946	66758976	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000748	chr1	-	473	1	ISM	ENSMUSG00000026000.17	ENSMUST00000027149.12	4270	10	37876	0	20076	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCGGGTACTGTTGTTTG	NA	False	NA	-2	True	AATAAA	-17	NA	67040148	67039675	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_-_67039700_67040100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000761	chr1	-	647	3	ISM	ENSMUSG00000026196.8	ENSMUST00000027393.8	5659	11	56406	2869	56406	-2869	3prime_fragment	FALSE	canonical	3	41	junction_2	2.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAGGAATTCATTTTGAT	NA	False	NA	-41	True	AATAAA	-14	NA	71085899	71069525	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_-_71070012_71070517_71070616_71085836
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000773	chr1	-	397	2	Intergenic	novelGene_8	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATGCTCTCTCTCTTTTT	5068	False	NA	NA	False	AATAAA	-17	NA	71725979	71722558	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_-_71722857_71725880
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000779	chr1	-	883	6	NIC	ENSMUSG00000026189.14	novel	1120	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	98.9432160382914	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	False	NA	-6	True	AATAAA	-19	NA	72323418	72298330	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72316445_72316580_72323251
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000783	chr1	+	2556	21	FSM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	-6	-1	-6	1	multi-exon	FALSE	canonical	3	464	junction_5	74.8852455427636	314	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGAAGTCTCAT	316	False	NA	23	True	TATAAA	-29	NA	72346579	72434112	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000795	chr1	+	522	5	NIC	ENSMUSG00000046330.11	novel	558	4	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	2	14	junction_3	6621.49731933798	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTTTTTTGCCTTGT	NA	False	NA	0	True	AATAAA	-17	NA	72750448	72752778	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_72750483_72750830_72750960_72751300_72751384_72752340_72752499_72752660
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000796	chr1	+	422	4	NNC	ENSMUSG00000046330.11	novel	558	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	6433.80716735174	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTTTTTTGCCTTGT	NA	False	NA	0	True	AATAAA	-17	NA	72750448	72752778	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_+_72750483_72750830_72750960_72751300_72751442_72752660
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000798	chr1	+	392	4	NNC	ENSMUSG00000046330.11	novel	558	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	6434.23625788036	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTTTTTTGCCTTGT	NA	False	NA	0	True	AATAAA	-17	NA	72750448	72752778	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_+_72750483_72750830_72750960_72751300_72751384_72752632
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000834	chr1	+	644	3	FSM	ENSMUSG00000026179.15	ENSMUST00000113805.8	740	3	96	0	-19	0	multi-exon	FALSE	canonical	3	1381	junction_1	89	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCCAGGTTGAATTTGT	NA	False	NA	6	True	AATAAA	-24	NA	74324184	74326613	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_74324297_74325000_74325170_74326250
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000839	chr1	-	2170	12	FSM	ENSMUSG00000006301.18	ENSMUST00000016309.16	2378	12	208	0	18	0	multi-exon	FALSE	canonical	0	0	junction_11	38.8406364690682	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGAGTTGCTGTGGCTT	NA	False	NA	-6	True	AATAAA	-22	NA	74343356	74327405	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74343281
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000845	chr1	+	1150	5	ISM	ENSMUSG00000026177.12	ENSMUST00000027368.6	2315	15	8440	0	43	0	3prime_fragment	FALSE	canonical	3	29	junction_1	7.87400787401181	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAAGAGTTCTAGGTTA	4364	False	NA	NA	False	NA	NA	NA	74422801	74425221	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_+_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000861	chr1	-	1479	10	FSM	ENSMUSG00000026171.13	ENSMUST00000027357.12	1479	10	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_3	8.63384096891663	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTATGTGGTATGACTCTT	NA	False	NA	NA	False	AATAAA	-30	NA	74640556	74632906	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_74633562_74633718_74633854_74634367_74634461_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000878	chr1	+	1206	10	FSM	ENSMUSG00000026197.13	ENSMUST00000160439.8	1206	10	-3	3	-3	1	multi-exon	FALSE	canonical	3	87	junction_1	30.0361921605614	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGAGTGCTGTTTCTTT	2029	False	NA	13	True	AGTAAA	-19	NA	75145286	75148270	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000905	chr1	-	2057	4	FSM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	39	744	-12	0	multi-exon	FALSE	canonical	3	248	junction_2	27.6526068692749	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTGCTTTCTTTTGGC	NA	False	NA	-2	True	ATTAAA	-20	NA	75195899	75191615	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_75193238_75193470_75193620_75193855_75194079_75195836
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000911	chr1	-	229	1	ISM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	3516	1322	1636	62	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTCCCCTTTGTAACTG	234	False	NA	-15	True	AATAAA	-19	NA	75192422	75192193	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_-_75192200_75192400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000944	chr1	-	1911	17	FSM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	23	17	-12	0	multi-exon	FALSE	canonical	3	979	junction_9	154.241693455434	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	-2	True	AATAAA	-19	NA	78465511	78401721	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000945	chr1	-	1800	17	FSM	ENSMUSG00000026245.17	ENSMUST00000189529.7	1801	17	1	0	1	0	multi-exon	FALSE	canonical	3	42	junction_15	338.950378927359	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	-2	True	AATAAA	-19	NA	78465498	78401721	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456651_78458944_78459001_78465421
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000952	chr1	-	264	1	NIC	ENSMUSG00000026245.17	novel	2036	18	NA	NA	63447	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	-2	True	AATAAA	-19	NA	78401985	78401721	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_-_78401700_78402000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000000992	chr1	-	120	1	Intergenic	novelGene_9	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTTTCTTGTGGGTGATT	NA	False	NA	1	True	NA	NA	NA	84310070	84309950	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_-_84310000_84310100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001000	chr1	+	723	1	Genic_Genomic	ENSMUSG00000026223.16	novel	NA	NA	NA	NA	1809	17	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTCTGACTTTGGCCCT	3748	False	NA	9	True	NA	NA	NA	85835690	85836413	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr1_+_85835700_85836400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001018	chr1	-	216	1	NIC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	513	12	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTCCTAGAGGTTACATT	NA	False	NA	-16	True	AGTAAA	-28	NA	86278420	86278204	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_-_86278200_86278400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001031	chr1	+	1112	4	FSM	ENSMUSG00000026238.15	ENSMUST00000186255.7	768	4	-15	-329	-5	-12	multi-exon	FALSE	canonical	3	33	junction_2	10628.523175347	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	45	True	AATAAA	-34	NA	86454442	86458422	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_86454673_86456894_86456967_86457452_86457527_86457686
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001033	chr1	+	1213	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-5	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9439.51567547297	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	45	True	AATAAA	-34	NA	86454442	86458422	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_+_86454673_86456894_86456967_86457177_86457279_86457452_86457527_86457686
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001037	chr1	+	1419	4	NIC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-4	-12	intron_retention	FALSE	canonical	3	20058	junction_2	1765.57494570151	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	45	True	AATAAA	-34	NA	86454443	86458422	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_86454673_86456894_86457275_86457452_86457527_86457686
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001063	chr1	+	2531	6	FSM	ENSMUSG00000026254.18	ENSMUST00000113232.8	1125	6	50	-1456	-15	-1	multi-exon	FALSE	canonical	3	965	junction_1	545.938677875089	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCTCATGCTCTTGCT	NA	False	NA	14	True	AATAAA	-14	NA	87141685	87155785	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001071	chr1	+	1135	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113231.4	1119	7	-5	-11	-5	11	multi-exon	FALSE	canonical	3	1076	junction_1	458.210801802935	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGCTCTTTATGGTGCA	NA	False	NA	26	True	AATAAA	-26	NA	87142002	87155797	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001119	chr1	-	2067	12	FSM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	-4	-3	-4	0	multi-exon	FALSE	canonical	3	59	junction_8	12	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTAATTTGGTCACTGG	NA	False	NA	-1	True	AATAAA	-20	NA	90017870	89969853	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001135	chr1	+	1805	1	Genic_Genomic	ENSMUSG00000026305.16	novel	NA	NA	NA	NA	4284	6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGGTTGTTCTGGTCTTT	NA	False	NA	10	True	AATAAA	-24	NA	91043238	91045043	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr1_+_91043200_91045000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001138	chr1	+	1876	10	FSM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	-17	-496	-2	496	multi-exon	FALSE	canonical	3	274	junction_9	29.8142396999972	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGCCTAGCATTCACAC	302	False	NA	10	True	AATAAA	-22	NA	91178023	91214243	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001146	chr1	+	188	1	Intergenic	novelGene_10	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTCCTTAGCTGCTGCC	NA	False	NA	NA	False	NA	NA	NA	91231403	91231591	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_+_91231400_91231600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001151	chr1	-	143	1	Genic_Genomic	ENSMUSG00000026309.15	novel	NA	NA	NA	NA	2948	4	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGTGACTGGTCCTGAG	NA	False	NA	-4	True	AATAAA	-22	NA	91303691	91303548	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr1_-_91303500_91303700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001155	chr1	-	1336	4	FSM	ENSMUSG00000067071.9	ENSMUST00000086851.2	1335	4	0	-1	0	1	multi-exon	FALSE	canonical	3	93	junction_1	18.4932420089069	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGTGTCCAATGTGTGA	NA	False	NA	0	True	AATAAA	-36	NA	91340944	91339203	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_91340205_91340442_91340525_91340614_91340702_91340778
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001166	chr1	-	329	2	NIC	ENSMUSG00000073616.11	novel	438	3	NA	NA	24	-12	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGATTTTAATTCCTGTG	NA	False	NA	-31	True	AATAAA	-18	NA	92569683	92564878	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_-_92565126_92569601
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001191	chr1	-	1077	7	ISM	ENSMUSG00000034088.16	ENSMUST00000170883.8	6231	28	-14	25016	0	62	5prime_fragment	FALSE	canonical	3	431	junction_6	30.9914862861113	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACAGTGTGGAGGTGGCA	NA	False	NA	4	True	NA	NA	NA	93406537	93358677	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_-_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001216	chr1	-	1831	5	FSM	ENSMUSG00000026281.16	ENSMUST00000027503.14	1003	5	-7	-821	-7	821	multi-exon	FALSE	canonical	3	1212	junction_3	505.005136112495	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTCGTGAGATCTTGGG	2303	False	NA	-10	True	NA	NA	NA	93729663	93719476	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729419
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001223	chr1	-	978	5	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	3	131	junction_4	555.767656039824	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCACGAGCTTTGGTTCTG	2338	False	NA	-25	True	AATAAA	-19	NA	93729628	93720302	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729411
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001230	chr1	-	637	2	NNC	ENSMUSG00000026281.16	novel	1055	2	NA	NA	0	-426	at_least_one_novel_splicesite	FALSE	canonical	3	131	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGGTTTTGTTTTTTT	2338	False	NA	-2	True	ATTAAA	-20	NA	93729628	93728212	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_-_93728633_93729411
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001234	chr1	+	835	8	FSM	ENSMUSG00000026283.14	ENSMUST00000027505.13	4533	8	10	3688	-8	25	multi-exon	FALSE	canonical	0	0	junction_4	74.6873756509937	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTATTTTGACTGATATTT	NA	False	NA	27	True	AATATA	-44	NA	93731696	93746129	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_93731762_93733769_93733842_93739503_93739671_93740128_93740241_93740387_93740482_93744096_93744233_93744359_93744422_93746002
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001238	chr1	+	631	1	FSM	ENSMUSG00000081051.5	ENSMUST00000117288.2	531	1	-38	-62	-38	62	mono-exon	FALSE	NA	NA	NA	NA	NA	1615	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATGGAACCAAGACATTAG	NA	False	NA	NA	False	NA	NA	NA	95426307	95426938	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_95426300_95426900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001258	chr1	-	2033	10	FSM	ENSMUSG00000009905.6	ENSMUST00000010049.6	5518	10	44	3441	0	-3441	multi-exon	FALSE	canonical	3	165	junction_2	12.4017123469222	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTTCTTACTCTCAGAG	8305	False	NA	NA	False	AATAAA	-14	NA	106687413	106651629	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_106652752_106655358_106655461_106662276_106662361_106667060_106667145_106671398_106671591_106675217_106675314_106675500_106675567_106680941_106680999_106683173_106683264_106687273
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001308	chr1	-	1513	2	FSM	ENSMUSG00000036975.6	ENSMUST00000037906.6	3341	2	20	1808	20	-1808	multi-exon	FALSE	canonical	3	113	junction_1	0	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGTGGACTGTGGAAGT	NA	False	NA	2	True	AATAAA	-30	NA	119840918	119837427	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_119838885_119840862
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001329	chr1	-	2247	13	FSM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	11	0	11	0	multi-exon	FALSE	canonical	3	390	junction_12	122.318232492135	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTATACCTTTCCCT	NA	False	NA	-16	True	CATAAA	-23	NA	121495707	121481563	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001333	chr1	-	268	1	ISM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	13883	4	5109	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTTTTTATACCTTT	NA	False	NA	-20	True	CATAAA	-19	NA	121481835	121481567	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_-_121481600_121481800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001388	chr1	+	2037	15	FSM	ENSMUSG00000026427.17	ENSMUST00000068805.14	2009	15	-8	-20	-8	20	multi-exon	FALSE	canonical	3	546	junction_5	43.4650340351123	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGAATCGCTCTTCTGTTT	NA	False	NA	61	True	AATAAA	-42	NA	131080909	131101235	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001396	chr1	+	1398	4	FSM	ENSMUSG00000055184.5	ENSMUST00000068613.5	2191	4	-44	837	-44	-837	multi-exon	FALSE	canonical	3	32	junction_2	3.29983164553722	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAACGTTTACTGTTTTA	NA	False	NA	13	True	AGTAAA	-26	NA	131455596	131466773	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_131456591_131458391_131458470_131461546_131461672_131466572
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001400	chr1	+	1307	1	ISM	ENSMUSG00000013275.10	ENSMUST00000086559.7	4697	11	19580	2	4717	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTATCCCTGTGTGT	NA	False	NA	21	True	AATAAA	-18	NA	131775294	131776601	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_+_131775300_131776600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001404	chr1	+	1320	5	FSM	ENSMUSG00000026433.14	ENSMUST00000112386.8	1202	5	30	-148	14	0	multi-exon	FALSE	canonical	3	82	junction_1	6.13901457890434	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGGTTGTGATGCTGGG	NA	False	NA	15	True	ATTAAA	-17	NA	131794991	131800625	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001444	chr1	+	659	3	FSM	ENSMUSG00000115958.2	ENSMUST00000195286.5	656	3	0	-3	0	3	multi-exon	FALSE	canonical	3	13	junction_1	17.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTGTTATTTTTCCCCT	5608	False	NA	7	True	AATAAA	-19	NA	133251703	133257463	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_133251787_133254872_133255079_133257093
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001445	chr1	+	581	3	NIC	ENSMUSG00000115958.2	novel	656	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	18	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	5608	False	NA	4	True	AATAAA	-16	NA	133251703	133257460	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_133251787_133254947_133255079_133257093
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001453	chr1	+	2281	8	FSM	ENSMUSG00000070644.14	ENSMUST00000135222.9	2297	8	-2	18	-2	2	multi-exon	FALSE	canonical	3	61	junction_5	9.79379228628721	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGGTCTTGGAAGGACAGT	NA	False	NA	7	True	ATTAAA	-17	NA	133291307	133308056	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_133291757_133293313_133293574_133296487_133296611_133300872_133301016_133302264_133302349_133304643_133304790_133306186_133306261_133307054
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001472	chr1	-	202	1	NIC	ENSMUSG00000090553.9	novel	503	5	NA	NA	5848	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACATTGTTTCATTCTG	NA	False	NA	-14	True	AATAAA	-25	NA	133531815	133531613	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_-_133531600_133531800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001491	chr1	+	191	1	Intergenic	novelGene_11	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAACTATTATTAAGCCTG	8104	False	NA	NA	False	NA	NA	NA	134284709	134284900	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_+_134284700_134284900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001510	chr1	+	1227	1	ISM	ENSMUSG00000026455.15	ENSMUST00000027725.11	3408	12	34118	143	14369	2	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAGAGAATTTGTGGGTA	1639	False	NA	19	True	ATTAAA	-20	NA	134417386	134418613	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_+_134417400_134418600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001516	chr1	+	154	1	Intergenic	novelGene_12	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTCGTCTGTTCGTGAT	6182	False	NA	31	True	NA	NA	NA	134461726	134461880	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_+_134461700_134461900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001540	chr1	-	2288	11	FSM	ENSMUSG00000041926.16	ENSMUST00000077340.14	2288	11	3	-3	3	3	multi-exon	FALSE	canonical	3	249	junction_8	16.9602476397015	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGAGTTATAGAATGACT	NA	False	NA	-11	True	AATAAA	-25	NA	135211819	135190446	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135200099_135200217_135205126_135205276_135206504_135206646_135211299
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001559	chr1	+	1832	6	FSM	ENSMUSG00000026421.15	ENSMUST00000027677.8	1823	6	-9	0	-9	0	multi-exon	FALSE	canonical	3	392	junction_1	35.0884596413123	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTTCCTGTCTGTCT	NA	False	NA	24	True	AATAAA	-17	NA	135656875	135679970	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_135657013_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001564	chr1	+	153	1	ISM	ENSMUSG00000026421.15	ENSMUST00000097561.9	1828	6	32019	0	22933	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTTCCTGTCTGTCT	6089	False	NA	24	True	AATAAA	-17	NA	135679817	135679970	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_+_135679800_135680000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001591	chr1	-	1482	1	ISM	ENSMUSG00000026398.15	ENSMUST00000027649.14	4733	9	116396	0	96531	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTAAATCCTTTATGTT	NA	False	NA	-14	True	AATAAA	-23	NA	136771790	136770308	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_-_136770300_136771800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001593	chr1	-	2931	9	FSM	ENSMUSG00000026398.15	ENSMUST00000192929.6	1756	9	26	-1201	26	14	multi-exon	FALSE	canonical	3	24	junction_8	13.3041346956501	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGGAGGGCAGAGATAGC	NA	False	NA	NA	False	NA	NA	NA	136881342	136771999	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459_136876598_136879839_136879903_136881231
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001603	chr1	+	695	4	FSM	ENSMUSG00000018196.19	ENSMUST00000185362.7	3337	4	22	2620	13	5	multi-exon	FALSE	canonical	3	459	junction_1	59.84981202978	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATTGGCCAGTTTTTGAGC	NA	False	NA	36	True	AATAAA	-23	NA	143615316	143622519	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_143615497_143617385_143617450_143620784_143620962_143622245
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001635	chr1	+	2744	8	FSM	ENSMUSG00000023150.15	ENSMUST00000111887.10	2783	8	39	0	-30	0	multi-exon	TRUE	canonical	3	234	junction_7	396.626282743927	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACGTCTGTAGCCTTTTA	NA	False	NA	11	True	ATTAAA	-28	NA	151220298	151232550	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001638	chr1	+	983	1	ISM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	18959	4	2189	3	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGCACTGTGGGATTTA	NA	False	NA	13	True	ATTAAA	-17	NA	151239186	151240169	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_+_151239200_151240200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001679	chr1	-	723	6	ISM	ENSMUSG00000042699.12	ENSMUST00000188345.2	2346	19	0	13752	0	183	5prime_fragment	FALSE	canonical	3	83	junction_2	16.7403703662733	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAGATCCAAGGAGAATA	NA	False	NA	NA	False	NA	NA	NA	153363397	153353839	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_-_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001689	chr1	+	940	8	FSM	ENSMUSG00000033701.14	ENSMUST00000035560.9	5592	8	555	4097	551	138	multi-exon	TRUE	canonical	3	134	junction_7	98.5478232605254	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGACGTCTCAGCAACTC	NA	False	NA	29	True	AATAAA	-21	NA	155434422	155562979	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155477199_155477283_155491612_155491719_155500614_155500705_155552949_155552981_155562694
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001714	chr1	+	494	1	FSM	ENSMUSG00000078193.3	ENSMUST00000102782.4	445	1	-1	-48	-1	48	mono-exon	FALSE	NA	NA	NA	NA	NA	1563	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGACAAAAACAGGAGACAG	NA	False	NA	NA	False	NA	NA	NA	156193608	156194102	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_156193600_156194100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001736	chr1	+	756	3	NNC	ENSMUSG00000049881.14	novel	1194	3	NA	NA	122	-1	at_least_one_novel_splicesite	FALSE	canonical	1	29	junction_1	506.5	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCTGGCCCAGTGTCTT	NA	False	NA	34	True	AATAAA	-16	NA	157240331	157247805	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_+_157240669_157241313_157241366_157247438
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001741	chr1	+	1640	10	FSM	ENSMUSG00000033488.12	ENSMUST00000046743.11	1618	10	-20	-2	-17	2	multi-exon	FALSE	canonical	3	36	junction_7	9.08125188520113	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	16	True	NA	NA	NA	157286129	157316632	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157294735_157294818_157298185_157298368_157299757_157299987_157316012
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001772	chr1	+	470	11	FSM	ENSMUSG00000053332.14	ENSMUST00000159706.8	557	11	96	-9	0	7	multi-exon	TRUE	canonical	3	3085	junction_7	1053.46856146731	1493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCATTTTGTTCTGATG	NA	False	NA	29	True	ATTAAA	-25	NA	160862732	160866116	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001775	chr1	+	807	11	FSM	ENSMUSG00000053332.14	ENSMUST00000161461.8	793	11	-14	0	1	0	multi-exon	FALSE	canonical	3	1206	junction_6	1709.07735342787	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862733	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001776	chr1	+	284	6	NIC	ENSMUSG00000053332.14	novel	346	8	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	2	36	junction_4	2195.84234406753	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862733	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001778	chr1	+	1630	7	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	1	0	intron_retention	FALSE	canonical	3	3576	junction_1	865.328967631514	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862733	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001781	chr1	+	348	8	FSM	ENSMUSG00000053332.14	ENSMUST00000159663.8	346	8	-2	0	1	0	multi-exon	FALSE	canonical	3	131	junction_6	1912.24889508	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862733	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001782	chr1	+	1634	7	FSM	ENSMUSG00000053332.14	ENSMUST00000162163.8	1614	7	-20	0	1	0	multi-exon	FALSE	canonical	3	3085	junction_3	1089.57866474462	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862733	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_160862765_160863321_160863375_160863552_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001784	chr1	+	1090	9	FSM	ENSMUSG00000053332.14	ENSMUST00000159890.8	1066	9	-24	0	1	0	multi-exon	FALSE	canonical	3	3085	junction_5	979.227469743369	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862733	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863815_160864118_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001812	chr1	+	3376	1	FSM	ENSMUSG00000065160.3	ENSMUST00000083226.3	84	1	-2192	-1100	-2192	1100	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862733	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_160862700_160866100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001815	chr1	+	428	10	NIC	ENSMUSG00000053332.14	novel	557	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	68	junction_2	1652.03833692402	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_160862765_160863321_160863375_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001817	chr1	+	1076	10	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	1206	junction_5	1509.85648896971	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001818	chr1	+	1199	9	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_5	1020.66944177584	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001820	chr1	+	432	10	FSM	ENSMUSG00000053332.14	ENSMUST00000159119.8	665	10	237	-4	0	0	multi-exon	FALSE	canonical	2	2	junction_6	1774.02353596925	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865074_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001821	chr1	+	772	11	NIC	ENSMUSG00000053332.14	novel	502	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	1206	junction_6	1448.71477178912	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001822	chr1	+	1084	9	NIC	ENSMUSG00000053332.14	novel	502	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	3576	junction_1	753.146068170046	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001823	chr1	+	423	8	ISM	ENSMUSG00000053332.14	ENSMUST00000162289.8	904	10	3	849	0	124	5prime_fragment	FALSE	canonical	3	3085	junction_7	1201.54334427155	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATGTTTTAAAGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	160862735	160865254	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001827	chr1	+	764	10	FSM	ENSMUSG00000053332.14	ENSMUST00000160429.8	759	10	0	-5	0	0	multi-exon	FALSE	canonical	3	3085	junction_6	1099.1542202985	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001835	chr1	+	1439	8	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_4	1075.75672464189	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001838	chr1	+	423	10	NIC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	38	junction_3	1766.41595705353	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001862	chr1	-	2727	17	FSM	ENSMUSG00000026709.11	ENSMUST00000035430.4	3619	17	-5	897	-5	1	multi-exon	TRUE	canonical	3	321	junction_5	41.9044672439586	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGAGTCTTCCTGTTTTC	NA	False	NA	-9	True	AATGAA	-33	NA	160898233	160869067	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001909	chr1	-	2510	5	FSM	ENSMUSG00000040124.6	ENSMUST00000045138.6	2538	5	28	0	15	0	multi-exon	FALSE	canonical	3	58	junction_3	10.1827059272082	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATGGTCTGTCATTTAA	NA	False	NA	-1	True	AATAAA	-18	NA	163231210	163212476	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_163214267_163219978_163220120_163222159_163222262_163224380_163224739_163231091
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001927	chr1	+	645	1	ISM	ENSMUSG00000040918.13	ENSMUST00000044021.12	3571	6	15679	16	2372	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCTTTTCACTCAGAA	NA	False	NA	13	True	AATAAA	-15	NA	164092293	164092938	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_+_164092300_164092900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001945	chr1	+	188	1	Intergenic	novelGene_13	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAGAAGATGGCAGGCA	NA	False	NA	NA	False	NA	NA	NA	164732309	164732497	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_+_164732300_164732500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001958	chr1	+	772	5	FSM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	159	94	-28	1	multi-exon	FALSE	canonical	3	408	junction_4	28.8704000665041	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTCTTTACATTTGCCT	NA	False	NA	13	True	AATAAA	-18	NA	165288764	165308689	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035_165307148_165308471
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001963	chr1	-	2181	5	FSM	ENSMUSG00000026566.16	ENSMUST00000068705.13	2171	5	-10	0	-2	0	multi-exon	FALSE	canonical	3	343	junction_1	201.827896981562	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	-1	True	AATACA	-19	NA	165462100	165419808	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_165421247_165432178_165432312_165433177_165433392_165436006_165436174_165461871
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000001984	chr1	-	1542	12	FSM	ENSMUSG00000040629.9	ENSMUST00000038782.4	1546	12	4	0	4	0	multi-exon	FALSE	canonical	3	15	junction_10	4.55453638177285	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCACTCTTGCTTGTT	NA	False	NA	-7	True	ATTAAA	-22	NA	166066309	166028953	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_166029305_166029843_166029920_166032358_166032492_166033421_166033485_166053158_166053301_166053405_166053461_166054134_166054260_166061733_166061776_166062969_166063126_166064441_166064542_166065831_166065925_166066103
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002019	chr1	-	1420	8	FSM	ENSMUSG00000026675.13	ENSMUST00000111353.4	1446	8	31	-5	31	5	multi-exon	TRUE	canonical	3	56	junction_5	6.15115718331742	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTCTGTGATCTTAACTT	NA	False	NA	NA	False	AATAAA	-29	NA	169796779	169783064	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_169783603_169786991_169787049_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002025	chr1	-	1298	6	FSM	ENSMUSG00000026659.14	ENSMUST00000027970.14	1374	6	78	-2	-5	2	multi-exon	FALSE	canonical	3	209	junction_3	62.7917191992702	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTGTTAGATGGTTTAA	NA	False	NA	0	True	ATTAAA	-18	NA	170713031	170701754	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708598_170712635
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002033	chr1	-	1331	3	FSM	ENSMUSG00000059498.14	ENSMUST00000168817.2	1298	3	-28	-5	-28	5	multi-exon	FALSE	canonical	3	151	junction_2	7.5	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTTGGTGACTTCTT	NA	False	NA	-2	True	AATAAA	-29	NA	170885651	170878737	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_170879422_170881507_170881763_170885259
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002056	chr1	+	578	4	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3201	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	55.1180551180827	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTTGTGTCTTTGGGT	NA	False	NA	16	True	AATAAA	-22	NA	171049421	171053947	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_+_171049548_171052852_171052936_171053234_171053368_171053711
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002082	chr1	+	1693	1	Intergenic	novelGene_14	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTTTCTTGTGGGTGATT	NA	False	NA	NA	False	NA	NA	NA	171140578	171142271	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_+_171140600_171142300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002097	chr1	-	1370	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111289.8	3041	7	1	1670	0	3	multi-exon	FALSE	canonical	3	17	junction_6	46.1904270986484	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGACATGTCTTTTGG	879	False	NA	-7	True	AATATA	-11	NA	171173213	171169808	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173103
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002107	chr1	+	616	4	NNC	ENSMUSG00000006412.11	novel	1735	4	NA	NA	29	200	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_3	941.834144398872	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATAGCCTGAACCTTTAT	NA	False	NA	29	True	NA	NA	NA	171173266	171185738	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr1_+_171173355_171184097_171184187_171184272_171184397_171185423
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002120	chr1	+	1753	10	FSM	ENSMUSG00000026641.14	ENSMUST00000001284.13	1115	10	0	-638	0	2	multi-exon	FALSE	canonical	3	42	junction_4	49.4805111903093	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTCCTCCTTT	6737	False	NA	65	True	GATAAA	-17	NA	171238880	171246327	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243368_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002130	chr1	-	2283	8	FSM	ENSMUSG00000026556.16	ENSMUST00000027837.13	5698	8	9	3406	9	63	multi-exon	FALSE	canonical	3	70	junction_3	8.90768986749708	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCACCCTGCCCTCCAAT	NA	False	NA	-5	True	GATAAA	-20	NA	171854853	171831932	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002212	chr1	-	1411	7	ISM	ENSMUSG00000055067.16	ENSMUST00000068437.13	3360	9	154438	1760	-105057	444	3prime_fragment	FALSE	canonical	3	343	junction_1	12.7758452644912	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCCTCCATTTATTTT	NA	False	NA	NA	False	AATACA	-31	NA	178921967	178784370	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_-_178785128_178799752_178799862_178871301_178871477_178877855_178877944_178913888_178914000_178920430_178920534_178921899
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002240	chr1	+	208	1	Intergenic	novelGene_15	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTCATTTAAACTATTA	NA	False	NA	NA	False	NA	NA	NA	180494512	180494720	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_+_180494500_180494700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002247	chr1	-	639	1	ISM	ENSMUSG00000060743.13	ENSMUST00000161308.8	2841	4	10429	1733	10331	132	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTCTGGTCTTTATTA	NA	False	NA	NA	False	ATTAAA	-16	NA	180630768	180630129	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_-_180630100_180630800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002272	chr1	+	1607	4	FSM	ENSMUSG00000038793.9	ENSMUST00000037361.9	1620	4	14	-1	14	1	multi-exon	FALSE	canonical	3	187	junction_2	33.0790299468141	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTGTTTCCTTATTT	NA	False	NA	9	True	AATAAA	-18	NA	180762600	180765966	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_180762925_180764111_180764359_180764573_180764820_180765176
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002296	chr1	-	550	1	Genic_Genomic	ENSMUSG00000004880.12	novel	NA	NA	NA	NA	4678	20	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGCCACAGCTTTGG	NA	False	NA	-30	True	AATAAA	-21	NA	181643429	181642879	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr1_-_181642900_181643400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002299	chr1	-	3552	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	-22	-20	-22	20	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGCCACAGCTTTGG	NA	False	NA	-30	True	AATAAA	-21	NA	181669966	181642879	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002347	chr1	+	2212	10	FSM	ENSMUSG00000026617.17	ENSMUST00000210277.2	1226	10	5	-991	-3	-5	multi-exon	FALSE	canonical	3	122	junction_7	59.2152382790481	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGTAATTGCCTTTATT	NA	False	NA	NA	False	ATTAAA	-16	NA	185064373	185089969	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002348	chr1	+	2167	9	FSM	ENSMUSG00000026617.17	ENSMUST00000027916.13	2200	9	28	5	-3	-5	multi-exon	FALSE	canonical	3	151	junction_6	39.6957176531676	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGTAATTGCCTTTATT	NA	False	NA	NA	False	ATTAAA	-16	NA	185064373	185089969	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002354	chr1	+	4901	32	FSM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	0	5	0	-5	multi-exon	FALSE	canonical	3	1945	junction_14	331.30791485156	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATCTATTTGGTTCATC	NA	False	NA	17	True	AATAAA	-19	NA	185095240	185160552	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002376	chr1	-	1782	3	FSM	ENSMUSG00000026608.14	ENSMUST00000192200.2	908	3	282	-1156	-100	0	multi-exon	FALSE	canonical	3	202	junction_2	16	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGTGTCTTCAGTTATT	NA	False	NA	-2	True	ATTAAA	-20	NA	188706537	188703291	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr1_-_188704881_188706262_188706402_188706483
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002413	chr1	+	1129	1	ISM	ENSMUSG00000026622.16	ENSMUST00000027931.8	3227	8	10477	1	4773	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTGATGTTTGTATTC	NA	False	NA	28	True	TATAAA	-39	NA	191564032	191565161	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr1_+_191564000_191565200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002422	chr1	+	233	1	Intergenic	novelGene_16	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATAGTTTTGTCACAGTTT	NA	False	NA	NA	False	NA	NA	NA	194225073	194225306	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_+_194225100_194225300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002435	chr10	+	229	1	Intergenic	novelGene_17	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAATCTTGGGAAGTT	NA	False	NA	NA	False	NA	NA	NA	3450256	3450485	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr10_+_3450300_3450500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002461	chr10	-	218	1	Genic_Genomic	ENSMUSG00000019773.8	novel	NA	NA	NA	NA	5225	2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGTGCAGGTTTTTTT	NA	False	NA	-7	True	AATAAA	-14	NA	5749375	5749157	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr10_-_5749200_5749400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002466	chr10	+	185	1	FSM	ENSMUSG00000081926.2	ENSMUST00000121411.2	114	1	-2	-69	-2	69	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGATTGGGGCATAAAGC	2117	False	NA	NA	False	AATAAA	-37	NA	6988658	6988843	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_6988700_6988800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002484	chr10	+	1306	8	FSM	ENSMUSG00000040034.16	ENSMUST00000040135.9	1286	8	-15	-5	-15	5	multi-exon	FALSE	canonical	3	1090	junction_2	84.4680835751418	674	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGGCTTGCTGCTTGCTT	NA	False	NA	25	True	AATAAA	-25	NA	7543251	7554650	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_7543446_7543765_7543889_7545316_7545395_7546702_7546884_7549348_7549485_7550769_7550922_7552003_7552127_7554331
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002491	chr10	+	1770	11	FSM	ENSMUSG00000019794.14	ENSMUST00000019929.13	1774	11	4	0	4	0	multi-exon	TRUE	canonical	3	353	junction_4	21.6323831327018	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGTTTCAATTTAGCAC	NA	False	NA	9	True	AATAAA	-18	NA	7601767	7638913	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7636634_7637006_7637134_7638553
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002513	chr10	+	1258	1	FSM	ENSMUSG00000045455.9	ENSMUST00000052902.9	613	1	0	-645	0	645	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATCTGCATTGATTTCC	NA	False	NA	NA	False	NA	NA	NA	11484966	11486224	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_11485000_11486200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002530	chr10	-	2093	12	FSM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	19	17	0	9	multi-exon	FALSE	canonical	3	96	junction_6	16.7987602848376	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTTGTTTAGTTAATGC	NA	False	NA	NA	False	AATAAA	-17	NA	13428864	13399876	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002536	chr10	-	1388	6	FSM	ENSMUSG00000019806.14	ENSMUST00000162610.8	1554	6	166	0	8	0	multi-exon	FALSE	canonical	3	87	junction_1	15.3179633110933	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGTCTGCACTGTTCA	NA	False	NA	0	True	AATAAA	-17	NA	13744558	13522797	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_13523451_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002558	chr10	-	1175	6	FSM	ENSMUSG00000059554.13	ENSMUST00000080860.13	1190	6	15	0	-3	0	multi-exon	FALSE	canonical	3	48	junction_2	8.9977775033616	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTTTTCTGTTTAGAA	NA	False	NA	0	True	AATAAA	-21	NA	18110729	18089423	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_18089927_18092007_18092031_18095235_18095391_18100644_18100809_18106166_18106367_18110599
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002571	chr10	-	167	1	Intergenic	novelGene_18	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAAGTGAATTTAGTG	NA	False	NA	NA	False	NA	NA	NA	19443346	19443179	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr10_-_19443200_19443300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002610	chr10	+	2439	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	17	0	0	0	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	18	True	AATAAA	-24	NA	21870581	21875802	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002620	chr10	-	563	2	FSM	ENSMUSG00000097327.8	ENSMUST00000181614.2	548	2	-11	-4	-11	4	multi-exon	FALSE	canonical	3	41	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGCCTTGGTTTTATCA	NA	False	NA	-4	True	NA	NA	NA	22024733	22020196	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_22020414_22024387
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002640	chr10	-	504	6	NNC	ENSMUSG00000061983.8	novel	584	6	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_4	1669.3762427925	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663098	23661080	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662774_23662891_23662943_23663053
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002641	chr10	-	648	6	NIC	ENSMUSG00000061983.8	novel	584	6	NA	NA	2	0	intron_retention	FALSE	canonical	3	98	junction_3	1551.61727239677	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663098	23661080	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662779_23662891_23662943_23663053
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002647	chr10	-	622	5	NIC	ENSMUSG00000061983.8	novel	584	6	NA	NA	2	0	intron_retention	FALSE	canonical	3	2594	junction_4	866.215439426012	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663098	23661080	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662943_23663053
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002659	chr10	-	1783	3	FSM	ENSMUSG00000061983.8	ENSMUST00000220171.2	1795	3	2	10	2	4	multi-exon	FALSE	canonical	3	2594	junction_2	565	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTTGTATTTCTTGTT	NA	False	NA	-14	True	AATAAA	-17	NA	23663098	23661091	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_23662779_23662891_23662943_23663053
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002665	chr10	-	2006	1	FSM	ENSMUSG00000070063.3	ENSMUST00000093556.3	129	1	-1725	-152	-1725	152	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTCTTGTATTTCTTGT	NA	False	NA	-15	True	AATAAA	-16	NA	23663098	23661092	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_23661100_23663100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002671	chr10	-	746	5	NIC	ENSMUSG00000061983.8	novel	490	7	NA	NA	2	2	intron_retention	FALSE	canonical	3	98	junction_3	1728.19202853734	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTGTATTTCTTG	NA	False	NA	-16	True	AATAAA	-15	NA	23663098	23661093	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662779_23662891
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002683	chr10	+	2343	5	FSM	ENSMUSG00000019997.12	ENSMUST00000020171.12	2398	5	60	-5	60	0	multi-exon	FALSE	canonical	3	24	junction_4	4.81534007106456	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGGCTGTTCATTCTTG	NA	False	NA	10	True	AATAAA	-26	NA	24471399	24474581	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_24471687_24471773_24471997_24472244_24472497_24472629_24472842_24473212
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002708	chr10	-	657	1	FSM	ENSMUSG00000069682.7	ENSMUST00000092620.6	635	1	-13	-9	-13	9	mono-exon	FALSE	NA	NA	NA	NA	NA	3321	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAATAGACTTCCTATAT	NA	False	NA	1	True	AATAAA	-30	NA	29575389	29574732	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_29574700_29575400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002736	chr10	+	201	1	Intergenic	novelGene_19	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACCTGCTGCTCTGGCA	NA	False	NA	NA	False	NA	NA	NA	33254319	33254520	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr10_+_33254300_33254500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002754	chr10	+	212	1	Intergenic	novelGene_20	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTAAATGTGGCTGAAG	NA	False	NA	NA	False	TTTAAA	-10	NA	34097784	34097996	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr10_+_34097800_34098000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002756	chr10	-	506	3	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-35	693	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	27.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109562	34106209	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr10_-_34106388_34106902_34107071_34109402
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002768	chr10	-	2730	12	FSM	ENSMUSG00000039480.15	ENSMUST00000047885.14	2743	12	13	0	0	0	multi-exon	FALSE	canonical	3	63	junction_7	12.7305190664984	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTGTATTATTGAATA	NA	False	NA	-1	True	AATAAA	-17	NA	34294535	34179604	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002773	chr10	-	1914	1	FSM	ENSMUSG00000063953.4	ENSMUST00000080898.4	3218	1	-1	1305	-1	-1305	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTCCAGTTGCTTGTTTT	NA	False	NA	NA	False	ATTAAA	-36	NA	35587889	35585975	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_35586000_35587900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002806	chr10	-	3207	8	FSM	ENSMUSG00000075232.7	ENSMUST00000238969.2	3206	8	-1	0	-1	0	multi-exon	FALSE	canonical	3	315	junction_3	48.542848734549	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGTTTTCTGTTTGGTGT	NA	False	NA	-5	True	AATAAA	-29	NA	40178185	40163453	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002816	chr10	+	1243	2	FSM	ENSMUSG00000019826.12	ENSMUST00000216656.2	2476	2	-52	1285	0	-1285	multi-exon	FALSE	canonical	3	104	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTCGTTGTCACCTCACA	NA	False	NA	10	True	AATAAA	-19	NA	41326378	41328179	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_41326527_41327084
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002823	chr10	-	1649	10	FSM	ENSMUSG00000019822.13	ENSMUST00000019965.13	1602	10	-47	0	-18	0	multi-exon	FALSE	canonical	3	150	junction_9	17.8020667408847	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTCTACCTTGTTCCTT	NA	False	NA	0	True	AATAAA	-20	NA	41366383	41363167	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365021_41365270_41365348_41365459_41365557_41365978
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002857	chr10	+	97	1	ISM	ENSMUSG00000019804.13	ENSMUST00000019939.12	1401	4	33243	0	32984	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGCTCTGGTTGC	NA	False	NA	12	True	AATAAA	-13	NA	42411269	42411366	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_+_42411300_42411400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002871	chr10	+	476	2	NNC	ENSMUSG00000045886.8	novel	456	2	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTCGGTGGTCATGGTG	NA	False	NA	NA	False	AATAAA	-44	NA	43400079	43400640	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr10_+_43400167_43400251
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002873	chr10	+	561	1	FSM	ENSMUSG00000045886.8	ENSMUST00000057649.8	563	1	0	2	0	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTCGGTGGTCATGGTG	NA	False	NA	NA	False	AATAAA	-44	NA	43400079	43400640	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_43400100_43400600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002876	chr10	-	246	1	Genic_Genomic	ENSMUSG00000019797.12	novel	NA	NA	NA	NA	478	13	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTCTGTGGAAGCTGCGG	NA	False	NA	1	True	AATAAA	-30	NA	43401361	43401115	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr10_-_43401100_43401400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002879	chr10	-	918	4	FSM	ENSMUSG00000019797.12	ENSMUST00000147196.3	860	4	-54	-4	-28	4	multi-exon	TRUE	canonical	3	617	junction_3	154.165135127528	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACCGGAGCACTCTGTGG	NA	False	NA	-8	True	AATAAA	-21	NA	43417018	43401124	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_43401405_43406593_43406667_43408671_43409154_43416935
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002898	chr10	+	2220	7	NIC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	-15	5	combination_of_known_splicesites	FALSE	canonical	3	39	junction_5	103.891636921468	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTGGCTCAAGTGA	NA	False	NA	NA	False	AATAAA	-23	NA	44144395	44240292	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44222952_44223071_44238911
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002910	chr10	+	801	1	FSM	ENSMUSG00000110841.2	ENSMUST00000217344.2	782	1	-16	-3	-2	3	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGATACACAAAATGACA	NA	False	NA	NA	False	AATAAA	-37	NA	45751384	45752185	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_45751400_45752200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002948	chr10	+	203	1	Intergenic	novelGene_21	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAACCTGGGTCTGGTTCC	30	False	NA	NA	False	NA	NA	NA	58394418	58394621	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr10_+_58394400_58394600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002961	chr10	-	115	1	ISM	ENSMUSG00000009647.14	ENSMUST00000020312.13	2872	8	169594	0	11062	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGGCATCTCGTTCTTTA	NA	False	NA	-1	True	AATAAA	-20	NA	59282920	59282805	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_59282800_59282900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000002963	chr10	+	225	1	Intergenic	novelGene_22	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGGGAGAAGTGGGATAG	7847	False	NA	NA	False	NA	NA	NA	59548700	59548925	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr10_+_59548700_59548900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003002	chr10	+	822	4	FSM	ENSMUSG00000020098.8	ENSMUST00000020298.8	789	4	-28	-5	0	5	multi-exon	FALSE	canonical	3	60	junction_3	1.24721912892465	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTAGAACCTTCTTTTC	NA	False	NA	11	True	AATAAA	-22	NA	60925109	60930108	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_60925196_60927842_60927975_60928382_60928464_60929585
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003006	chr10	-	287	1	ISM	ENSMUSG00000020097.15	ENSMUST00000122259.8	4102	15	48716	0	4197	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	3425	False	NA	-2	True	AATAAA	-16	NA	60934707	60934420	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_60934400_60934700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003057	chr10	-	1101	3	FSM	ENSMUSG00000020083.14	ENSMUST00000142796.8	1135	3	37	-3	0	3	multi-exon	FALSE	canonical	3	38	junction_2	41.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGTGAATGACTGACTCA	NA	False	NA	-7	True	AATAAA	-24	NA	61946792	61943985	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_61944903_61945662_61945792_61946737
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003064	chr10	-	1420	7	ISM	ENSMUSG00000037031.11	ENSMUST00000047883.11	3638	8	28013	1959	-1461	354	3prime_fragment	TRUE	canonical	3	245	junction_1	10.975983884018	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTGTTTGGAAGTCT	NA	False	NA	0	True	AATAAA	-27	NA	62039017	62023133	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_62023942_62024421_62024539_62025592_62025641_62027246_62027364_62029645_62029742_62037556_62037632_62038858
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003098	chr10	-	409	1	ISM	ENSMUSG00000020076.8	ENSMUST00000218304.2	746	2	5089	120	5089	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	4114	False	NA	-11	True	ATTAAA	-28	NA	62452202	62451793	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_62451800_62452200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003105	chr10	-	389	2	ISM	ENSMUSG00000020074.8	ENSMUST00000220236.2	589	3	3718	-99	3718	1	3prime_fragment	TRUE	canonical	3	375	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTAATTTCCAAGATAG	9905	False	NA	0	True	GATAAA	-31	NA	62592410	62588952	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_62589193_62592261
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003109	chr10	-	651	1	ISM	ENSMUSG00000047146.18	ENSMUST00000050826.14	13986	11	74794	0	9319	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTAGTCTATTTTTTTC	NA	False	NA	1	True	AATAAA	-21	NA	62640999	62640348	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_62640300_62641000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003117	chr10	-	1461	10	FSM	ENSMUSG00000020069.17	ENSMUST00000020263.14	2213	10	-8	760	-8	4	multi-exon	FALSE	canonical	3	275	junction_6	80.8621750760186	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTTGCTACTTTTTATA	5773	False	NA	-2	True	AATAAA	-19	NA	62859681	62851202	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859498
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003170	chr10	-	336	1	ISM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	10009	2472	7050	510	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTTCTGAAATTATGTA	5737	False	NA	-10	True	AATAAA	-18	NA	71064101	71063765	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_71063800_71064100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003173	chr10	-	1389	7	FSM	ENSMUSG00000019927.7	ENSMUST00000020085.7	1431	7	42	0	-2	0	multi-exon	FALSE	canonical	3	135	junction_2	5.39804491356722	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTTGACTACTTAATGCA	NA	False	NA	0	True	AATAAA	-18	NA	71121050	71090809	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_71091705_71092444_71092539_71094030_71094137_71095571_71095650_71097913_71097946_71098028_71098093_71120930
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003179	chr10	-	373	1	ISM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	13860	242	13860	-242	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACATGTACATTGTACTT	NA	False	NA	-28	True	ATTAAA	-15	NA	71166924	71166551	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_71166600_71166900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003183	chr10	+	1844	8	FSM	ENSMUSG00000019923.15	ENSMUST00000020081.11	1834	8	-3	-7	-3	7	multi-exon	FALSE	canonical	3	928	junction_7	94.1772102940808	517	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTTGCATTTTGTATT	NA	False	NA	17	True	AATAAA	-30	NA	72490673	72510803	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509797
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003243	chr10	-	2262	8	FSM	ENSMUSG00000000901.18	ENSMUST00000000924.13	2288	8	27	-1	0	1	multi-exon	FALSE	canonical	3	194	junction_3	14.5349683908307	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCTGTCTGTTTTTCTTTG	5083	False	NA	-2	True	ATTAAA	-18	NA	75768309	75759054	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003246	chr10	-	1793	9	FSM	ENSMUSG00000000901.18	ENSMUST00000120281.8	1793	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	51.1639521538358	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5083	False	NA	-3	True	ATTAAA	-17	NA	75768309	75759055	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_75759325_75759792_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003253	chr10	+	691	3	ISM	ENSMUSG00000049422.8	ENSMUST00000058906.7	939	4	503	-22	503	0	3prime_fragment	FALSE	canonical	3	16591	junction_2	626	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	7449	False	NA	23	True	ATTAAA	-20	NA	75771909	75773581	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_+_75772280_75773140_75773289_75773408
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003272	chr10	+	630	6	NIC	ENSMUSG00000033105.13	novel	3969	16	NA	NA	5	1878	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	92.058676940308	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTGTATGCATTATGAAA	NA	False	NA	NA	False	NA	NA	NA	76367450	76373435	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_+_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76373402
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003279	chr10	-	161	1	Genic_Genomic	ENSMUSG00000001120.16	novel	NA	NA	NA	NA	26408	3	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGACTTCTCTCTGCTA	1864	False	NA	0	True	AATAAA	-21	NA	76597848	76597687	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr10_-_76597700_76597800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003288	chr10	+	2212	9	FSM	ENSMUSG00000020260.10	ENSMUST00000020493.9	2290	9	78	0	-22	0	multi-exon	FALSE	canonical	3	83	junction_5	28.5938695352693	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCAGTCCTAGAAATGGT	NA	False	NA	16	True	AATAAA	-17	NA	77095129	77105409	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_77095288_77096407_77096659_77098270_77098416_77099098_77099210_77100789_77100857_77101669_77101796_77102746_77102928_77103017_77103142_77104360
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003313	chr10	+	206	1	Intergenic	novelGene_23	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGCAGGTGCTCTTGAC	9645	False	NA	NA	False	NA	NA	NA	77467663	77467869	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr10_+_77467700_77467900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003327	chr10	-	3841	21	FSM	ENSMUSG00000032834.12	ENSMUST00000042556.11	3872	21	31	0	31	0	multi-exon	FALSE	canonical	3	184	junction_16	14.9260678009984	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTTTGTCTGTGTGTGG	NA	False	NA	-5	True	AATACA	-17	NA	78020952	78006742	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003334	chr10	+	493	1	FSM	ENSMUSG00000064317.6	ENSMUST00000072739.6	309	1	-18	-166	-18	166	mono-exon	FALSE	NA	NA	NA	NA	NA	378	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTAATTTATTTTTATG	NA	False	NA	NA	False	NA	NA	NA	78229135	78229628	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_78229100_78229600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003346	chr10	-	575	1	ISM	ENSMUSG00000032788.16	ENSMUST00000041616.15	5124	11	27654	3	10925	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTAGTGTGGTCATT	9975	False	NA	-5	True	AATAAA	-14	NA	78273155	78272580	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_78272600_78273200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003351	chr10	+	2285	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	41.9345521815444	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5346	False	NA	30	True	AATAAA	-39	NA	78410280	78420336	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_+_78410403_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003354	chr10	+	2521	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	39.9503024602651	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5376	False	NA	30	True	AATAAA	-39	NA	78410310	78420336	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_+_78410669_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003359	chr10	+	2256	15	FSM	ENSMUSG00000032763.12	ENSMUST00000218885.2	2233	15	0	-23	0	0	multi-exon	FALSE	canonical	3	132	junction_8	19.815990244945	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5893	False	NA	30	True	AATAAA	-39	NA	78410827	78420336	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003380	chr10	+	785	3	ISM	ENSMUSG00000020307.16	ENSMUST00000166603.2	1078	6	2699	-4	0	0	3prime_fragment	FALSE	canonical	3	1645	junction_2	77.5	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79520836	79524232	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_+_79520937_79521066_79521202_79523682
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003385	chr10	+	97	1	ISM	ENSMUSG00000020307.16	ENSMUST00000020550.13	1266	5	6107	0	3299	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79524135	79524232	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_+_79524100_79524200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003404	chr10	+	2935	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	178	-3	0	3	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1561	False	NA	26	True	AATAAA	-16	NA	79690438	79700269	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003405	chr10	+	2857	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	-24	336	0	3	multi-exon	FALSE	canonical	3	638	junction_7	276.779833782898	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1561	False	NA	26	True	AATAAA	-16	NA	79690438	79700269	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003421	chr10	+	1440	10	FSM	ENSMUSG00000035754.9	ENSMUST00000045247.9	3911	10	-35	2506	-35	86	multi-exon	FALSE	canonical	3	1673	junction_5	33.7828943493195	861	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCTTGGTTGTTCTGTCCC	2251	False	NA	36	True	ACTAAA	-24	NA	79795950	79803531	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003457	chr10	-	179	1	Intergenic	novelGene_24	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAAAATTGTGTTCGGT	NA	False	NA	NA	False	NA	NA	NA	79947843	79947664	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr10_-_79947700_79947800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003470	chr10	+	419	1	ISM	ENSMUSG00000035621.14	ENSMUST00000042057.12	3727	9	9678	0	6712	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTTGCCCCTGGCTGTTC	2205	False	NA	25	True	AATAAA	-17	NA	79993783	79994202	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_+_79993800_79994200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003472	chr10	+	1260	7	FSM	ENSMUSG00000045193.14	ENSMUST00000105365.9	1321	7	61	0	-1	0	multi-exon	FALSE	canonical	3	285	junction_6	33.736314097555	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGCTCTGACCATTTCCC	6190	False	NA	NA	False	ATTAAA	-18	NA	80003672	80007489	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80006815
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003474	chr10	+	835	8	FSM	ENSMUSG00000045193.14	ENSMUST00000054666.7	834	8	-1	0	-1	0	multi-exon	FALSE	canonical	3	40	junction_6	141.847863313236	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCGACTCTGTGGCTTGG	6190	False	NA	NA	False	AATAAA	-17	NA	80003672	80008620	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80008247_80008347_80008470
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003476	chr10	+	764	7	NIC	ENSMUSG00000045193.14	novel	834	8	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	1	5	junction_5	159.6200349441	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCGACTCTGTGGCTTGG	6190	False	NA	NA	False	AATAAA	-17	NA	80003672	80008620	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80008247_80008347_80008470
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003485	chr10	+	799	8	FSM	ENSMUSG00000020153.15	ENSMUST00000020361.7	758	8	-38	-3	-35	1	multi-exon	FALSE	canonical	3	1255	junction_1	343.259525783067	1131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTCTGTGTGGACTG	9654	False	NA	26	True	AATAAA	-17	NA	80085247	80092629	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003506	chr10	+	532	4	FSM	ENSMUSG00000063457.15	ENSMUST00000068408.14	500	4	-31	-1	-31	1	multi-exon	FALSE	canonical	3	5732	junction_1	1157.99510649513	1067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGTTTTTGTTTTTTTT	6311	False	NA	31	True	AATAAA	-22	NA	80128255	80129949	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_80128318_80128608_80128695_80129475_80129711_80129800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003511	chr10	+	1570	2	NIC	ENSMUSG00000063457.15	novel	500	4	NA	NA	0	-2	intron_retention	FALSE	canonical	3	7729	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGGTTTTTGTTTTT	6342	False	NA	28	True	AATAAA	-19	NA	80128286	80129946	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_+_80129711_80129800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003520	chr10	+	784	3	FSM	ENSMUSG00000063457.15	ENSMUST00000062674.7	572	3	-185	-27	7	0	multi-exon	FALSE	canonical	3	7729	junction_2	373	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGGTTTTTGTTTTTTT	6349	False	NA	30	True	AATAAA	-21	NA	80128293	80129948	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_80128695_80129475_80129711_80129800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003524	chr10	+	609	4	NNC	ENSMUSG00000063457.15	novel	500	4	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	3	409	junction_1	3639.28063709788	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGGTTTTTGTTTTTTT	6367	False	NA	30	True	AATAAA	-21	NA	80128311	80129948	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr10_+_80128452_80128608_80128695_80129475_80129711_80129800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003533	chr10	+	1940	5	FSM	ENSMUSG00000035504.17	ENSMUST00000105357.2	2127	5	187	0	-5	0	multi-exon	FALSE	canonical	3	489	junction_4	47.9921868641136	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGTGTCCGCTAAGCTG	7214	False	NA	18	True	AATAAA	-19	NA	80165973	80172275	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170943
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003553	chr10	-	1306	2	ISM	ENSMUSG00000047417.19	ENSMUST00000057910.16	5250	15	9	9123	9	-2721	5prime_fragment	FALSE	canonical	3	427	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAGAAAGACCCAGCCA	9430	False	NA	NA	False	AAGAAA	-9	NA	80397385	80385881	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_80386900_80397097
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003599	chr10	-	719	4	ISM	ENSMUSG00000035278.10	ENSMUST00000219767.2	1261	5	648	-3	-11	0	3prime_fragment	FALSE	canonical	3	943	junction_2	138.96362433705	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80633746	80631932	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003618	chr10	+	1024	5	NIC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	-1	0	intron_retention	FALSE	canonical	3	460	junction_4	2987.93005272881	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	False	NA	19	True	AATAAA	-19	NA	80662518	80665124	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664726
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003620	chr10	+	1039	5	NIC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	233	junction_1	2913.0790733346	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	False	NA	19	True	AATAAA	-19	NA	80662519	80665124	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_+_80662740_80664076_80664217_80664294_80664468_80664544_80664631_80664704
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003621	chr10	+	1044	5	NNC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_4	3186.42134690314	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	14	True	AATAAA	-14	NA	80662519	80665119	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664635_80664704
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003636	chr10	-	479	4	NIC	ENSMUSG00000035215.10	novel	468	4	NA	NA	-6	-2	combination_of_known_splicesites	FALSE	canonical	3	184	junction_3	2016.46428736594	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCTCTGTAACTTTGA	NA	False	NA	-11	True	AATAAA	-27	NA	80691049	80688656	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_-_80688935_80689591_80689664_80690451_80690546_80691014
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003648	chr10	-	889	3	FSM	ENSMUSG00000020219.8	ENSMUST00000020440.7	1225	3	122	214	-62	-214	multi-exon	FALSE	canonical	3	3643	junction_2	39.5	756	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCTGCCCAGCACTTGA	5570	False	NA	1	True	NA	NA	NA	80736681	80735497	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_80736094_80736315_80736385_80736457
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003662	chr10	+	1287	4	FSM	ENSMUSG00000015312.10	ENSMUST00000015456.10	1284	4	-3	0	-3	0	multi-exon	FALSE	canonical	3	88	junction_3	10.2089285540757	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTCTCGTTGTATTTTA	245	False	NA	5	True	AATAAA	-14	NA	80765903	80768038	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_80766194_80766281_80766384_80766862_80767086_80767366
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003706	chr10	-	604	3	FSM	ENSMUSG00000034932.5	ENSMUST00000046114.5	604	3	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	11.5	438	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCATGCCCTGTG	3094	False	NA	0	True	AATAAA	-29	NA	81102768	81100546	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_81100832_81101484_81101642_81102606
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003722	chr10	-	1629	9	FSM	ENSMUSG00000020232.18	ENSMUST00000020454.11	1621	9	-3	-5	-1	2	multi-exon	FALSE	canonical	3	490	junction_7	50.249222630803	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAATATTTGTGGCTTTGG	NA	False	NA	-6	True	AATAAA	-22	NA	81186261	81181879	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003764	chr10	-	1675	8	FSM	ENSMUSG00000034748.17	ENSMUST00000042923.9	1891	8	216	0	-15	0	multi-exon	FALSE	canonical	3	197	junction_1	20.6723713873254	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGTTACATTTATGTA	9874	False	NA	-11	True	AATAAA	-25	NA	81463415	81457620	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003789	chr10	+	756	5	NNC	ENSMUSG00000112160.2	novel	2726	4	NA	NA	-38	11708	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_4	9.08295106229247	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCATTGTTTCCTTGCCTTC	NA	False	NA	8	True	NA	NA	NA	81919148	81958758	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr10_+_81919247_81943643_81943771_81943972_81944034_81944572_81944605_81958320
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003815	chr10	+	2380	14	ISM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	107	2950	-97	-1917	5prime_fragment	FALSE	canonical	3	69	junction_7	9.81666256450355	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTATATGGATTCTTCCT	NA	False	NA	17	True	AATAAA	-26	NA	82534947	82575312	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003827	chr10	+	3298	14	FSM	ENSMUSG00000020250.12	ENSMUST00000020484.9	3325	14	27	0	-1	0	multi-exon	FALSE	canonical	1	113	junction_1	208.745903123884	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGCCTTCTGACTGAGT	NA	False	NA	15	True	AATAAA	-16	NA	82695039	82733546	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_82695135_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003857	chr10	-	764	1	ISM	ENSMUSG00000046841.6	ENSMUST00000053871.5	3089	2	6994	0	6968	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGGGTTCTGAGAACT	NA	False	NA	-15	True	AATAAA	-26	NA	84362932	84362168	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_84362200_84362900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003898	chr10	-	2873	18	FSM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	-22	-26	-22	26	multi-exon	FALSE	canonical	3	2860	junction_11	342.987041630793	1101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGAATTATCTAATACTT	NA	False	NA	-14	True	AATAAA	-42	NA	86541395	86526677	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003920	chr10	+	833	7	FSM	ENSMUSG00000020056.17	ENSMUST00000182183.8	838	7	8	-3	8	2	multi-exon	FALSE	canonical	3	113	junction_4	103.215658803411	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTTGTTGACCAAATA	NA	False	NA	16	True	AATAAA	-19	NA	88037021	88081871	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055114_88055223_88070255_88070321_88081617
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003931	chr10	+	927	8	FSM	ENSMUSG00000020059.10	ENSMUST00000123244.8	927	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	38.7767024521326	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88303144_88303245_88305407_88305507_88308537_88308643_88308766
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003937	chr10	-	1783	6	FSM	ENSMUSG00000004359.17	ENSMUST00000138734.2	646	6	-19	-1118	-19	0	multi-exon	FALSE	canonical	3	380	junction_4	47.5815090134813	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	88520896	88510633	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88516340_88516437_88520827
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003939	chr10	-	2695	5	NIC	ENSMUSG00000004359.17	novel	1763	6	NA	NA	-16	0	intron_retention	FALSE	canonical	3	380	junction_3	53.1859943970215	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	88520893	88510633	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_-_88511933_88513361_88514499_88515720_88515818_88516340_88516437_88520827
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003942	chr10	-	1687	5	NIC	ENSMUSG00000004359.17	novel	1763	6	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	88520896	88510633	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000003969	chr10	+	354	1	Intergenic	novelGene_25	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	504	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAGGAAATTGCCACACC	NA	False	NA	NA	False	AGTAAA	-42	NA	89714110	89714464	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr10_+_89714100_89714500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004003	chr10	-	480	4	FSM	ENSMUSG00000020018.7	ENSMUST00000020203.7	861	4	22	359	22	-359	multi-exon	FALSE	canonical	3	2132	junction_3	195.841772867792	1450	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGACTATTTAATGCA	NA	False	NA	0	True	AATAAA	-29	NA	93425546	93419249	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_93419393_93419891_93419957_93423859_93423986_93425400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004018	chr10	+	451	3	NIC	ENSMUSG00000020022.18	novel	1110	4	NA	NA	-2	4	combination_of_known_splicesites	FALSE	canonical	3	40	junction_2	1952.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTGTGCGTTCACACC	NA	False	NA	17	True	ATTAAA	-17	NA	94034896	94056814	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_+_94034993_94035811_94035895_94056542
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004034	chr10	-	1092	2	NNC	ENSMUSG00000112261.2	novel	660	3	NA	NA	7808	561	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCTTCAGAAACCCTAAG	9361	False	NA	NA	False	AAGAAA	-10	NA	95289278	95280616	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr10_-_95281620_95289189
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004042	chr10	-	139	1	ISM	ENSMUSG00000062981.6	ENSMUST00000219019.2	677	6	19580	0	19580	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGTGTATTTCATTA	7346	False	NA	-8	True	AATAAA	-17	NA	95316805	95316666	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_95316700_95316800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004044	chr10	-	710	7	NIC	ENSMUSG00000062981.6	novel	677	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_3	1770.46641688944	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGTGTATTTCATTA	NA	False	NA	-8	True	AATAAA	-17	NA	95337801	95316666	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_-_95316840_95326107_95326275_95326396_95326444_95329492_95329578_95332685_95332750_95336244_95336385_95337767
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004048	chr10	-	1117	6	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	132	junction_2	1514.28562695418	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGTGTATTTCATTA	NA	False	NA	-8	True	AATAAA	-17	NA	95337801	95316666	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr10_-_95316840_95326107_95326729_95329492_95329578_95332685_95332750_95336244_95336385_95337767
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004078	chr10	+	411	1	ISM	ENSMUSG00000019943.11	ENSMUST00000020107.8	7130	21	108520	2061	4635	259	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTAGTCTTTTTTTTTTT	NA	False	NA	12	True	ATTAAA	-21	NA	98859533	98859944	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_+_98859500_98859900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004083	chr10	+	1276	2	Genic_Genomic	ENSMUSG00000091552.3	novel	883	1	NA	NA	-6099	297	multi-exon	FALSE	canonical	2	11	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTAGAGTCATAAAGTCTA	NA	False	NA	NA	False	AATAAA	-24	NA	100185997	100193276	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr10_+_100186070_100192072
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004159	chr10	+	664	1	ISM	ENSMUSG00000058799.17	ENSMUST00000218828.2	3934	14	16870	0	3583	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGGTGATATTTGAAGTT	NA	False	NA	NA	False	AATAAA	-24	NA	111333347	111334011	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_+_111333300_111334000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004162	chr10	+	2640	10	FSM	ENSMUSG00000063334.17	ENSMUST00000163048.8	5023	10	93	2290	0	-752	multi-exon	FALSE	canonical	3	311	junction_6	38.1443004172444	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGTAGCAGTTTCTCATC	NA	False	NA	27	True	ATTAAA	-38	NA	111808661	111822047	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004175	chr10	-	775	1	Genic_Genomic	ENSMUSG00000069520.7	novel	NA	NA	NA	NA	7551	3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTTGTTTTTATTT	7604	False	NA	-1	True	TATAAA	-22	NA	115177418	115176643	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr10_-_115176600_115177400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004182	chr10	-	2807	16	FSM	ENSMUSG00000020166.16	ENSMUST00000105267.8	2800	16	-1	-6	0	1	multi-exon	FALSE	canonical	3	333	junction_15	67.9643697503005	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTGGCTTTGATTTGAAA	NA	False	NA	0	True	AATAAA	-24	NA	116417406	116321064	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004197	chr10	-	2081	16	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-11	4	combination_of_known_junctions	FALSE	canonical	3	239	junction_15	561.749291647677	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTACTGATCTGTATAT	NA	False	NA	-7	True	AATAAA	-23	NA	116899291	116886901	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899064
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004202	chr10	-	282	1	Genic_Genomic	ENSMUSG00000034024.9	novel	NA	NA	NA	NA	3623	4	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTACTGATCTGTATAT	9749	False	NA	-7	True	AATAAA	-23	NA	116887183	116886901	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr10_-_116886900_116887200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004212	chr10	+	198	1	Intergenic	novelGene_26	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAGAAATGCATTC	2508	False	NA	NA	False	NA	NA	NA	116968873	116969071	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr10_+_116968900_116969100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004261	chr10	+	274	1	ISM	ENSMUSG00000020224.16	ENSMUST00000020444.16	1664	3	4322	917	4206	101	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATGCTGAAGTTGTGAT	NA	False	NA	10	True	AATAAA	-22	NA	120067296	120067570	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_+_120067300_120067600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004274	chr10	+	2160	1	Genic_Genomic	ENSMUSG00000034707.8	novel	NA	NA	NA	NA	11979	4	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCCTTTGTTTTTAGTC	NA	False	NA	12	True	ATTAAA	-24	NA	121230998	121233158	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr10_+_121231000_121233200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004347	chr10	-	1963	6	FSM	ENSMUSG00000040415.16	ENSMUST00000038217.14	1944	6	-19	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	37.9705148766777	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031597	127026246	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_127026909_127027204_127027423_127028477_127029227_127029598_127029673_127030278_127030504_127031562
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004348	chr10	-	996	4	NIC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	54.0760780957922	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031597	127026246	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr10_-_127026909_127029598_127029673_127030278_127030504_127031562
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004351	chr10	-	2265	5	FSM	ENSMUSG00000040415.16	ENSMUST00000116229.2	1994	5	-7	-264	-6	0	multi-exon	FALSE	canonical	3	65	junction_4	30.8332207205151	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031603	127026246	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_127027423_127028477_127029227_127029598_127029673_127030278_127030504_127031562
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004376	chr10	-	2870	21	FSM	ENSMUSG00000040354.15	ENSMUST00000037290.12	2939	21	69	0	-39	0	multi-exon	FALSE	canonical	3	1393	junction_15	206.401332360041	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCTCCTGGTCTACCCT	NA	False	NA	-6	True	AATAAA	-27	NA	127147586	127132089	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004420	chr10	+	376	1	FSM	ENSMUSG00000112909.2	ENSMUST00000219845.2	357	1	70	-89	70	89	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTATTGTCATTGCTCAG	NA	False	NA	4	True	AATAAA	-32	NA	127847714	127848090	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_127847700_127848100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004423	chr10	+	328	2	ISM	ENSMUSG00000025395.15	ENSMUST00000138330.2	819	3	2497	41	2497	9	3prime_fragment	FALSE	canonical	3	746	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTTGTAAAATGTATTA	NA	False	NA	11	True	AATAAA	-21	NA	127865052	127865861	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_+_127865154_127865634
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004437	chr10	+	2000	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	0	0	0	0	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	515	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGTGTCACCTTGTTT	846	False	NA	39	True	AATAAA	-40	NA	127894822	127913141	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004460	chr10	-	1530	13	FSM	ENSMUSG00000040043.18	ENSMUST00000092033.4	1481	13	-167	118	-167	99	multi-exon	FALSE	canonical	3	274	junction_9	21.4048281157936	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTTGCTTTGTATTTAA	NA	False	NA	2	True	AAAAAG	-25	NA	128012515	127969093	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004464	chr10	+	163	1	ISM	ENSMUSG00000044005.14	ENSMUST00000159440.8	2398	18	15057	59	2858	3	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATTTTATATTTTGCT	2203	False	NA	16	True	AATAAA	-22	NA	128045651	128045814	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_+_128045700_128045800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004478	chr10	-	400	1	ISM	ENSMUSG00000025383.3	ENSMUST00000026449.3	1360	4	1545	1	1545	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGGGTCTAAATTTCTA	NA	False	NA	NA	False	NA	NA	NA	128132408	128132008	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_128132000_128132400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004479	chr10	-	1433	4	FSM	ENSMUSG00000025383.3	ENSMUST00000026449.3	1360	4	-74	1	-74	-1	multi-exon	FALSE	canonical	2	12	junction_1	5.73488351136175	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGGGTCTAAATTTCTA	NA	False	NA	NA	False	NA	NA	NA	128134027	128132008	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_128132845_128132946_128133094_128133358_128133461_128133679
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004495	chr10	+	2935	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	-7	-2	-7	2	multi-exon	TRUE	canonical	3	1246	junction_9	132.722869167299	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTTGCTCTTACGTAAG	NA	False	NA	20	True	AATAAA	-20	NA	128173595	128198350	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004498	chr10	+	1336	1	ISM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	23410	0	23334	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCTTGCTCTTACGTA	2274	False	NA	18	True	AATAAA	-18	NA	128197012	128198348	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_+_128197000_128198300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004543	chr10	-	774	2	ISM	ENSMUSG00000093674.8	ENSMUST00000177513.2	680	3	23	-3	-3	0	intron_retention	FALSE	canonical	3	22347	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128384984	128383982	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr10_-_128384299_128384526
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004561	chr10	-	887	2	FSM	ENSMUSG00000093674.8	ENSMUST00000176966.2	523	2	-2	-362	-2	0	multi-exon	FALSE	canonical	3	7075	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128384983	128383982	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_128384843_128384956
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004568	chr10	-	2750	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	-260	-7	-260	5	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	2874	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTCTCTTTGTGGTG	8432	False	NA	0	True	AATAAA	-19	NA	128402116	128393629	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004582	chr10	-	433	4	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	43	1	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_3	8970.61519010201	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCATCGGAGTGTGTTT	NA	False	NA	-11	True	NA	NA	NA	128462350	128460404	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr10_-_128460506_128461075_128461207_128461931_128462110_128462327
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004583	chr10	-	455	4	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	23	1	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	8982.36514263118	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCATCGGAGTGTGTTT	NA	False	NA	-11	True	NA	NA	NA	128462370	128460404	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr10_-_128460506_128461075_128461207_128461931_128462129_128462344
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004636	chr10	-	1093	4	FSM	ENSMUSG00000025353.6	ENSMUST00000026409.5	1573	4	-33	513	18	67	multi-exon	FALSE	canonical	3	462	junction_3	176.577335905703	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTCTCTACTCCTTTGG	NA	False	NA	2	True	TATAAA	-19	NA	128657496	128654283	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_-_128654885_128655822_128655975_128656129_128656384_128657410
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004661	chr10	+	956	12	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	3	390	junction_1	1539.19360662578	20	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657786	128713498	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004680	chr10	+	84	1	FSM	ENSMUSG00000025351.15	ENSMUST00000220245.2	2894	1	2817	-7	2117	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	88	False	NA	35	True	ATTAAA	-27	NA	128748607	128748691	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr10_+_128748600_128748700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004728	chr11	+	696	5	FSM	ENSMUSG00000075702.11	ENSMUST00000094469.6	707	5	11	0	11	0	multi-exon	FALSE	canonical	3	143	junction_4	6.04152298679729	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGAGTCTCTTCTTATTT	NA	False	NA	22	True	ACTAAA	-14	NA	3464877	3467351	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_3465074_3466260_3466297_3466485_3466521_3466841_3466921_3467001
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004757	chr11	+	156	1	ISM	ENSMUSG00000020430.13	ENSMUST00000109985.8	2923	15	15091	783	15017	-783	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTCTGTGTTCAGAAG	4025	False	NA	25	True	NA	NA	NA	3929065	3929221	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_3929100_3929200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004769	chr11	+	1923	9	FSM	ENSMUSG00000034412.14	ENSMUST00000180088.2	1921	9	3	-5	3	2	multi-exon	FALSE	canonical	3	291	junction_8	26.2963875846094	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGTATAGTTAGGACCC	1585	False	NA	26	True	AATAAA	-17	NA	4136824	4165507	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_4137100_4155756_4155857_4159925_4160034_4162140_4162248_4162784_4162900_4162977_4163044_4163556_4163747_4163836_4163992_4164700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004784	chr11	+	201	1	Intergenic	novelGene_27	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATCTTAAGCATTGACAG	NA	False	NA	NA	False	NA	NA	NA	4537929	4538130	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_4537900_4538100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004803	chr11	+	816	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	287	junction_1	154.183786436836	111	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654644	4687669	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_4654713_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004815	chr11	+	1937	10	FSM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	-5	-6	-5	6	multi-exon	FALSE	canonical	3	1103	junction_6	68.3294488507475	268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTGTCTTCATCTACA	NA	False	NA	17	True	ATTAAA	-17	NA	4823945	4844206	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004833	chr11	-	403	1	Genic_Genomic	ENSMUSG00000009079.17	novel	NA	NA	NA	NA	802	2	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTCCTCTGTTCTCGT	NA	False	NA	-11	True	AATAAA	-25	NA	5020089	5019686	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr11_-_5019700_5020100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004869	chr11	+	209	1	Intergenic	novelGene_28	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAACTGAGGTGTAGCTGG	NA	False	NA	NA	False	NA	NA	NA	5657892	5658101	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_5657900_5658100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004873	chr11	+	183	1	Intergenic	novelGene_29	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAAAAAACCCAAAACTTT	NA	False	NA	NA	False	NA	NA	NA	5694841	5695024	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_5694800_5695000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004888	chr11	-	884	1	ISM	ENSMUSG00000020474.12	ENSMUST00000109837.8	2697	11	9046	0	1457	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAGTTTTACAAGTTTTA	9653	False	NA	NA	False	AATAAA	-19	NA	5778743	5777859	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_5777900_5778700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004890	chr11	-	1613	11	FSM	ENSMUSG00000020471.12	ENSMUST00000102922.10	1646	11	33	0	33	0	multi-exon	FALSE	canonical	3	869	junction_10	541.870242770352	457	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTCACTTGGGCATGT	9538	False	NA	2	True	AATAAA	-25	NA	5828259	5822179	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004909	chr11	+	1360	1	ISM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	10728	0	7117	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTCTTGTGTTTACTTT	NA	False	NA	19	True	GATAAA	-20	NA	5916420	5917780	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_5916400_5917800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004933	chr11	-	299	1	ISM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	4203	0	4198	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTCTCCCTTTGTTTT	9541	False	NA	NA	False	ATTAAA	-24	NA	6220667	6220368	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_6220400_6220700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004937	chr11	-	2161	4	FSM	ENSMUSG00000004394.13	ENSMUST00000130621.2	886	4	17	-1292	12	0	multi-exon	FALSE	canonical	3	463	junction_2	40.4337592722825	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTCTCCCTTTGTTTT	5355	False	NA	NA	False	ATTAAA	-24	NA	6224853	6220368	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004948	chr11	+	750	5	FSM	ENSMUSG00000071866.13	ENSMUST00000090749.13	746	5	-2	-2	0	0	multi-exon	FALSE	canonical	3	147	junction_1	16065.018555467	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTGTTTGTATTGGAG	NA	False	NA	2	True	AATAAA	-19	NA	6365867	6369817	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_6365985_6368100_6368132_6368225_6368315_6369112_6369286_6369477
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004957	chr11	-	299	1	NIC	ENSMUSG00000041126.17	novel	1633	5	NA	NA	15919	3	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCTCAGTATTTCTTC	NA	False	NA	0	True	GATAAA	-19	NA	6378433	6378134	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_6378100_6378400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004962	chr11	-	659	4	FSM	ENSMUSG00000085156.9	ENSMUST00000147762.9	611	4	-40	-8	-40	8	multi-exon	FALSE	canonical	3	436	junction_3	5.24933858267454	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCGGGTTTGAAGTCCTCT	NA	False	NA	7	True	NA	NA	NA	6478819	6475582	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_6475818_6476354_6476438_6478305_6478375_6478547
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000004965	chr11	-	462	3	FSM	ENSMUSG00000085156.9	ENSMUST00000124818.3	771	3	309	0	306	0	multi-exon	FALSE	canonical	3	446	junction_1	1	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478457	6475590	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_6475818_6476354_6476438_6478305
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005008	chr11	+	1337	9	NNC	ENSMUSG00000020407.14	novel	518	6	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	921.243512528039	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGACTCTGCGGTAGA	NA	False	NA	26	True	AATAAA	-20	NA	9068733	9086170	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_9068970_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005015	chr11	+	1175	9	NNC	ENSMUSG00000020407.14	novel	430	5	NA	NA	191	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	930.094887632439	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGACTCTGCGGTAGA	NA	False	NA	26	True	AATAAA	-20	NA	9068977	9086170	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_9069052_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005051	chr11	-	456	4	FSM	ENSMUSG00000078974.11	ENSMUST00000109642.8	691	4	-14	249	-14	2	multi-exon	FALSE	canonical	3	167	junction_3	2857.39815605425	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATCAAATTTTAGTAAAA	NA	False	NA	-36	True	AATAAA	-21	NA	16458180	16451635	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458099
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005069	chr11	+	2049	8	FSM	ENSMUSG00000078970.6	ENSMUST00000046955.7	2002	8	-39	-8	-39	8	multi-exon	FALSE	canonical	3	217	junction_1	21.86601127274	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGGCGTTGATTCTTTCC	2432	False	NA	16	True	AATAAA	-18	NA	17161878	17183804	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_17162147_17169013_17169115_17172196_17172328_17174548_17174651_17177160_17177277_17178140_17178276_17179768_17179867_17182706
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005079	chr11	+	240	1	ISM	ENSMUSG00000000581.9	ENSMUST00000000594.9	2981	5	9401	1942	3374	610	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGGTTGTATGTCCTGACT	5056	False	NA	26	True	AATAAA	-27	NA	17216994	17217234	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_17217000_17217200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005100	chr11	-	500	2	NNC	ENSMUSG00000085035.2	novel	627	2	NA	NA	-7432	190	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	0	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTCTTGGCCTCCATTAT	9124	False	NA	NA	False	NA	NA	NA	20103776	20095376	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_20095695_20103594
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005103	chr11	+	177	1	Intergenic	novelGene_30	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAAAAAGCCCTTCC	1536	False	NA	NA	False	NA	NA	NA	20114612	20114789	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_20114600_20114800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005115	chr11	-	313	1	NIC	ENSMUSG00000044066.15	novel	4804	7	NA	NA	10685	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTAGCTCAGTTGACT	NA	False	NA	-8	True	AATAAA	-17	NA	20188698	20188385	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_20188400_20188700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005187	chr11	+	193	1	Intergenic	novelGene_31	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAATTAGAAGCTGTTAA	NA	False	NA	NA	False	NA	NA	NA	26244628	26244821	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_26244600_26244800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005206	chr11	+	200	1	Intergenic	novelGene_32	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGAAAGAGGGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	28795741	28795941	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_28795700_28795900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005237	chr11	-	2021	1	Genic_Genomic	ENSMUSG00000020460.16	novel	NA	NA	NA	NA	-2	4	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGTGCTTTATTGTACA	NA	False	NA	-27	True	AATAAA	-20	NA	29497862	29495841	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr11_-_29495800_29497900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005239	chr11	-	599	6	NNC	ENSMUSG00000020460.16	novel	791	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6097.42649320187	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29497862	29495845	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_29496030_29496290_29496478_29496702_29496789_29497205_29497261_29497680_29497746_29497840
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005241	chr11	-	1380	4	NIC	ENSMUSG00000020460.16	novel	791	6	NA	NA	-1	0	intron_retention	FALSE	canonical	3	7569	junction_3	3666.0405829117	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29497861	29495845	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_29496030_29496290_29496423_29496702_29497746_29497840
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005260	chr11	+	208	1	Intergenic	novelGene_33	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCAGCCGCAGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	29616741	29616949	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_29616700_29616900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005270	chr11	+	182	1	Intergenic	novelGene_34	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTACCCAAGAATAGCTT	NA	False	NA	3	True	NA	NA	NA	30432655	30432837	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_30432700_30432800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005275	chr11	+	191	1	Intergenic	novelGene_35	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATTTATATTGAAACTTG	NA	False	NA	NA	False	NA	NA	NA	30698338	30698529	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_30698300_30698500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005277	chr11	-	587	5	ISM	ENSMUSG00000020311.18	ENSMUST00000073192.14	2532	14	11053	828	4986	149	3prime_fragment	TRUE	canonical	3	85	junction_1	6.75925291729789	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGTCTCACTTCATTCA	NA	False	NA	-15	True	GATAAA	-14	NA	30893099	30881601	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_30881849_30884671_30884748_30884981_30885060_30889496_30889622_30893038
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005318	chr11	-	368	1	NIC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	1608	20	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACTCTCATACTTTGAA	NA	False	NA	-12	True	AATAAA	-41	NA	33102857	33102489	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_33102500_33102900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005321	chr11	-	1667	10	NIC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	16927	junction_7	1937.68065505843	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	-32	True	AATAAA	-21	NA	33113076	33102509	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110922_33111105_33111226_33111547_33111628_33112921
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005325	chr11	-	1273	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	117	junction_6	6146.61064001942	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	-32	True	AATAAA	-21	NA	33113078	33102509	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110342_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005339	chr11	-	2574	10	ISM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	130	223	0	0	intron_retention	FALSE	canonical	3	16927	junction_8	1793.60603736828	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	-32	True	AATAAA	-21	NA	33113076	33102509	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005351	chr11	-	1303	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	6154.22693439233	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCACTGTTTCTATTTGCT	NA	False	NA	-34	True	AATAAA	-19	NA	33113075	33102511	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111252_33111547_33111628_33112921
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005362	chr11	-	969	10	FSM	ENSMUSG00000057113.14	ENSMUST00000101375.5	966	10	-1	-2	0	2	multi-exon	FALSE	canonical	3	29	junction_1	6470.30156337304	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCCTGGTGTCACTGATT	NA	False	NA	-5	True	ATTAAA	-13	NA	33113077	33105325	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_33105432_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005374	chr11	-	2159	15	FSM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	-49	-1	-49	1	multi-exon	FALSE	canonical	3	825	junction_11	73.3093807511866	444	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGGTGTGTTTCTTTGTC	NA	False	NA	0	True	AGTAAA	-18	NA	35725382	35699206	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005401	chr11	+	1628	4	FSM	ENSMUSG00000020328.11	ENSMUST00000020578.11	1577	4	-44	-7	-44	7	multi-exon	FALSE	canonical	3	1122	junction_2	37.9326889224701	1092	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTTCTTTTCTTCAAAAA	NA	False	NA	36	True	AATAAA	-28	NA	40624449	40630880	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_40624982_40626844_40626894_40627319_40627472_40629985
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005420	chr11	-	768	6	FSM	ENSMUSG00000020415.17	ENSMUST00000020687.15	741	6	-21	-6	-21	6	multi-exon	FALSE	canonical	3	2427	junction_5	2882.94754721622	1161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGATTGGTATTTTTTG	NA	False	NA	-6	True	AATAAA	-40	NA	43317099	43311070	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317027
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005428	chr11	-	701	6	FSM	ENSMUSG00000020415.17	ENSMUST00000118368.8	696	6	4	-9	0	0	multi-exon	FALSE	canonical	3	206	junction_5	3753.79296179211	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTGTGAATACTTAACCAA	NA	False	NA	-26	True	AATAAA	-20	NA	43317040	43311090	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317015
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005437	chr11	+	2712	16	FSM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	-33	946	-18	-946	multi-exon	FALSE	canonical	3	184	junction_1	28.1705914425349	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGGATTTTCGTACACTT	NA	False	NA	14	True	AATAAA	-25	NA	43324552	43337862	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005443	chr11	+	552	1	ISM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	12725	946	5077	-946	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGGATTTTCGTACACTT	NA	False	NA	14	True	AATAAA	-25	NA	43337310	43337862	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_43337300_43337900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005445	chr11	+	200	1	Intergenic	novelGene_36	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTCTGAGCCATCTCTT	3181	False	NA	NA	False	NA	NA	NA	43601859	43602059	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_43601900_43602100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005465	chr11	+	2896	1	ISM	ENSMUSG00000011256.17	ENSMUST00000011400.8	6383	23	88456	0	10326	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGTTTGGATGGCT	NA	False	NA	15	True	ATTAAA	-20	NA	46035274	46038170	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_46035300_46038200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005483	chr11	+	229	1	FSM	ENSMUSG00000080776.2	ENSMUST00000119853.2	813	1	657	-73	657	73	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATTTCTTGCAGCCATA	NA	False	NA	NA	False	AATAAA	-32	NA	46619301	46619530	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_46619300_46619500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005490	chr11	+	1582	7	FSM	ENSMUSG00000020372.16	ENSMUST00000139959.8	1542	7	-30	-10	-5	5	multi-exon	FALSE	canonical	3	5433	junction_6	484.72730019626	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGAGTCCTGGAAGCTG	NA	False	NA	33	True	AATAAA	-25	NA	48691153	48696925	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_48691400_48692489_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005500	chr11	+	112	1	NIC	ENSMUSG00000020372.16	novel	1542	7	NA	NA	529	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	23	True	AATAAA	-15	NA	48696803	48696915	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_+_48696800_48696900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005502	chr11	+	621	1	ISM	ENSMUSG00000046311.14	ENSMUST00000109197.8	4029	5	14667	31	3616	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCTGTGACTTGTTTTAG	NA	False	NA	7	True	AATAAA	-16	NA	49108991	49109612	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_49109000_49109600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005514	chr11	+	193	1	Intergenic	novelGene_37	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGTAAAAAAAGATTTATT	NA	False	NA	NA	False	NA	NA	NA	49576389	49576582	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_49576400_49576600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005541	chr11	+	2180	14	FSM	ENSMUSG00000007850.17	ENSMUST00000069304.14	2225	14	46	-1	0	0	multi-exon	TRUE	canonical	3	130	junction_1	115.462537790991	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	50268591	50277355	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005574	chr11	+	93	1	ISM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	3610	277	3574	8	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGTGTGTGGGTGTTCTT	NA	False	NA	24	True	AGTAAA	-19	NA	51514171	51514264	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_51514200_51514300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005620	chr11	+	1317	7	NIC	ENSMUSG00000036309.15	novel	1440	6	NA	NA	0	-184	combination_of_known_junctions	FALSE	canonical	3	40	junction_2	2365.51336335735	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTATGTCATCTTTTTA	439	False	NA	14	True	ATTAAA	-17	NA	52122863	52137501	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_+_52122946_52127663_52127761_52128210_52128300_52133413_52133488_52134441_52134586_52135807_52135949_52136811
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005636	chr11	+	2472	3	FSM	ENSMUSG00000036275.14	ENSMUST00000109057.8	2472	3	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	2	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTCTGTTAGTGTGTT	4558	False	NA	NA	False	AATAAA	-16	NA	52287254	52299555	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_52287431_52293872_52294385_52297771
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005640	chr11	-	293	1	ISM	ENSMUSG00000020361.14	ENSMUST00000020630.8	4618	19	40351	0	7135	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTTCTTAATTTTCTTA	NA	False	NA	-1	True	AATAAA	-22	NA	53150933	53150640	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_53150600_53150900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005650	chr11	-	526	2	FSM	ENSMUSG00000044894.15	ENSMUST00000061326.5	1521	2	-28	1023	-24	8	multi-exon	FALSE	canonical	3	5710	junction_1	0	1697	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTGCTTAGTTTGAG	2919	False	NA	0	True	AATAAA	-25	NA	53321682	53319771	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_53319978_53321362
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005667	chr11	+	137	1	Genic_Genomic	ENSMUSG00000018395.20	novel	NA	NA	NA	NA	7916	35	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGACCAGTCTCATTTTTC	NA	False	NA	NA	False	NA	NA	NA	53492692	53492829	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr11_+_53492700_53492800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005675	chr11	+	644	1	ISM	ENSMUSG00000018899.18	ENSMUST00000108920.10	2136	10	6664	1	3526	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCGTGTGGCTTTTTATTT	NA	False	NA	9	True	TATAAA	-16	NA	53667504	53668148	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_53667500_53668100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005678	chr11	-	1192	7	FSM	ENSMUSG00000020388.13	ENSMUST00000018755.10	1182	7	-7	-3	-7	3	multi-exon	FALSE	canonical	3	190	junction_5	18.9245578254523	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGTGTCTGGCCTGATAA	NA	False	NA	1	True	AATAAA	-25	NA	53959847	53945750	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_53946066_53946182_53946301_53946615_53946780_53946968_53947151_53950763_53950843_53954460_53954613_53959665
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005707	chr11	+	242	1	Intergenic	novelGene_38	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATAGTTGATCCCATCCC	NA	False	NA	NA	False	NA	NA	NA	54689589	54689831	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_54689600_54689800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005722	chr11	+	1440	5	FSM	ENSMUSG00000018339.13	ENSMUST00000082430.11	1594	5	154	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	9.98436277385793	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAGCCTACTTGGAATTT	NA	False	NA	9	True	AGTAAA	-16	NA	54793751	54801203	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_54793879_54797952_54798107_54799366_54799485_54799865_54799966_54800262
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005729	chr11	-	1425	7	ISM	ENSMUSG00000020400.18	ENSMUST00000108889.10	2834	18	35329	2	282	0	3prime_fragment	FALSE	canonical	3	102	junction_1	67.8126504094594	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	NA	False	NA	-5	True	CATAAA	-18	NA	54811619	54801612	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005744	chr11	+	861	1	ISM	ENSMUSG00000000594.8	ENSMUST00000000608.8	4127	4	11923	2131	11923	-2131	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGGCTCCTTTTCTTG	NA	False	NA	22	True	AATAAA	-15	NA	55000863	55001724	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_55000900_55001700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005767	chr11	-	150	1	Genic_Genomic	ENSMUSG00000018585.10	novel	NA	NA	NA	NA	14411	4	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGGTGTATGTTCTCG	176	False	NA	-3	True	AATAAA	-24	NA	55337612	55337462	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr11_-_55337500_55337600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005773	chr11	+	192	1	Intergenic	novelGene_39	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGCTATCTGCTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	55374211	55374403	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_55374200_55374400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005867	chr11	+	1273	7	FSM	ENSMUSG00000020441.7	ENSMUST00000020719.7	1285	7	13	-1	13	1	multi-exon	FALSE	canonical	3	128	junction_6	17.464249196573	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTATATTATCTCGCTG	NA	False	NA	8	True	AGTAAA	-16	NA	59099159	59101565	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_59099500_59099645_59099692_59099794_59099878_59099953_59100027_59100133_59100220_59100798_59100931_59101052
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000005949	chr11	-	752	1	ISM	ENSMUSG00000043284.13	ENSMUST00000168218.8	1511	3	13835	0	13584	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTTCTCTTTTCTGCC	NA	False	NA	-5	True	ATTAAA	-17	NA	60756029	60755277	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_60755300_60756000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006015	chr11	+	1254	3	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53083	-513	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	112	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTGGGCCCACACCTTT	NA	False	NA	25	True	AATAAA	-29	NA	62402516	62404730	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_62402636_62402963_62403098_62403729
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006030	chr11	+	1710	1	NIC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	25	True	AATAAA	-24	NA	62442329	62444039	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_+_62442300_62444000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006042	chr11	+	475	5	NNC	ENSMUSG00000086841.2	novel	462	5	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	1867.01606849004	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAGTGTTTTGGATGAA	NA	False	NA	NA	False	AATAAA	-20	NA	62493701	62495635	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_62493860_62494060_62494109_62494422_62494473_62495228_62495293_62495480
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006049	chr11	+	414	4	NIC	ENSMUSG00000086841.2	novel	462	5	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	410	junction_2	1602.82063874908	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAGTGTTTTGGATGAA	NA	False	NA	NA	False	AATAAA	-20	NA	62493702	62495635	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_+_62493850_62494060_62494109_62495228_62495293_62495480
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006050	chr11	+	652	4	ISM	ENSMUSG00000086841.2	ENSMUST00000131787.2	462	5	0	-2	0	2	intron_retention	FALSE	canonical	3	3662	junction_1	442.481135818868	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAGTGTTTTGGATGAA	NA	False	NA	NA	False	AATAAA	-20	NA	62493702	62495635	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_62493850_62494060_62494109_62494422_62494473_62495228
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006056	chr11	+	675	4	NIC	ENSMUSG00000086841.2	novel	462	5	NA	NA	0	2	intron_retention	FALSE	canonical	3	3941	junction_3	324.165938302524	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAGTGTTTTGGATGAA	NA	False	NA	NA	False	AATAAA	-20	NA	62493702	62495635	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_+_62494109_62494422_62494473_62495228_62495293_62495480
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006080	chr11	+	2918	24	FSM	ENSMUSG00000020549.15	ENSMUST00000101049.9	2884	24	-29	-5	7	5	multi-exon	FALSE	canonical	3	305	junction_18	22.4427858997362	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCAGTGTGGGGTCTTCTG	NA	False	NA	20	True	AATAAA	-20	NA	64869870	64892431	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006087	chr11	+	189	1	Intergenic	novelGene_40	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAGATATGACATAGTAT	NA	False	NA	NA	False	NA	NA	NA	66880709	66880898	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_66880700_66880900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006093	chr11	-	1326	5	FSM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	-43	0	-19	0	multi-exon	FALSE	canonical	3	79	junction_4	11.1579568022107	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	False	NA	2	True	CATAAA	-28	NA	66943439	66928866	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_66929272_66931044_66931162_66932306_66932934_66942506_66942605_66943360
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006096	chr11	-	1211	4	NIC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	-15	-13	combination_of_known_junctions	FALSE	canonical	2	8	junction_3	43.2229362980145	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTACTCTTAAGTATTCT	NA	False	NA	-11	True	CATAAA	-15	NA	66943435	66928879	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_66929272_66931044_66931162_66932306_66932934_66943360
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006115	chr11	-	2383	9	FSM	ENSMUSG00000018736.15	ENSMUST00000018880.14	2382	9	0	-1	0	1	multi-exon	FALSE	canonical	3	185	junction_5	15.9530561335438	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCGAGATTGCTTTATTTG	NA	False	NA	NA	False	AATAAA	-25	NA	68743961	68712258	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_68713492_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006202	chr11	+	208	1	Intergenic	novelGene_41	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCACTGATTGCTCTACCA	9151	False	NA	NA	False	NA	NA	NA	69432487	69432695	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_69432500_69432700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006205	chr11	-	1910	10	FSM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	-14	-5	-14	4	multi-exon	FALSE	canonical	3	103	junction_6	29.7960143162773	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATTGTGTCTGTTCGGGG	NA	False	NA	1	True	TATAAA	-20	NA	69470164	69452579	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006210	chr11	+	1785	11	FSM	ENSMUSG00000059552.14	ENSMUST00000005371.12	1772	11	-11	-2	-11	2	multi-exon	FALSE	canonical	3	1895	junction_3	134.752402575984	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTTGAGAGGTTGATAT	NA	False	NA	18	True	AATAAA	-19	NA	69471173	69482701	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006214	chr11	+	1849	11	FSM	ENSMUSG00000059552.14	ENSMUST00000171247.8	1867	11	19	-1	19	0	multi-exon	FALSE	canonical	3	351	junction_10	535.886405873484	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471203	69482699	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006223	chr11	+	1432	6	ISM	ENSMUSG00000018765.6	ENSMUST00000018909.4	2951	17	17938	0	-201	0	3prime_fragment	FALSE	canonical	3	1063	junction_4	117.696219140633	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69541753	69544123	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_69541899_69542064_69542263_69542348_69542550_69542803_69542900_69543035_69543134_69543429
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006228	chr11	+	499	1	Genic_Genomic	ENSMUSG00000018765.6	novel	NA	NA	NA	NA	480	1	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTTCCCATGTTGCCT	NA	False	NA	13	True	AATAAA	-16	NA	69543625	69544124	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr11_+_69543600_69544100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006233	chr11	-	391	1	ISM	ENSMUSG00000018761.15	ENSMUST00000018905.12	1321	7	5555	0	1166	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	8078	False	NA	-4	True	AATAAA	-33	NA	69547913	69547522	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_69547500_69547900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006241	chr11	-	1175	6	FSM	ENSMUSG00000018761.15	ENSMUST00000125389.2	646	6	-69	-460	0	-5	multi-exon	FALSE	canonical	3	53	junction_3	239.282761602252	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAATTGTGTTTAGTGTGC	6816	False	NA	-9	True	AATAAA	-28	NA	69553413	69547527	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69549391_69549525_69549636_69549703_69553294
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006262	chr11	-	2115	10	NIC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	0	intron_retention	TRUE	canonical	3	9657	junction_9	1410.46163531354	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	63	True	AATAAA	-18	NA	69563143	69557762	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561574_69561753_69561803_69563104
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006281	chr11	-	134	1	Genic_Genomic	ENSMUSG00000005204.13	novel	NA	NA	NA	NA	1200	5	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGTCTTCCTTAAGGG	NA	False	NA	0	True	AATAAA	-22	NA	69564069	69563935	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr11_-_69563900_69564100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006298	chr11	+	416	4	FSM	ENSMUSG00000070394.11	ENSMUST00000133967.8	421	4	10	-5	0	0	multi-exon	FALSE	canonical	3	250	junction_1	597.808404832927	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGTCTTTATTCATC	NA	False	NA	NA	False	ATTAAA	-21	NA	69729349	69730444	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_69729400_69729745_69729778_69730013_69730095_69730191
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006326	chr11	-	1466	7	FSM	ENSMUSG00000078812.11	ENSMUST00000043419.10	1437	7	-21	-8	-21	2	multi-exon	FALSE	canonical	3	627	junction_6	9644.56352477049	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTTGTTTATTTGTTGA	9920	False	NA	-7	True	AATAAA	-28	NA	69812233	69807537	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811988
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006332	chr11	-	633	1	Genic_Genomic	ENSMUSG00000078812.11	novel	NA	NA	NA	NA	960	2	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTTGTTTATTTGTTGA	9746	False	NA	-7	True	AATAAA	-28	NA	69808170	69807537	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr11_-_69807500_69808200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006351	chr11	-	1416	8	ISM	ENSMUSG00000018565.18	ENSMUST00000108594.8	1454	9	682	0	126	0	3prime_fragment	FALSE	canonical	3	471	junction_7	49.073455978081	398	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	9582	False	NA	0	True	AATAAA	-30	NA	69871396	69859049	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006403	chr11	-	806	5	NIC	ENSMUSG00000020831.19	novel	779	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_1	190.587742260619	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_70126295_70126822_70127038_70127702_70127805_70128356_70128452_70128609
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006408	chr11	-	635	3	FSM	ENSMUSG00000093989.2	ENSMUST00000040428.4	611	3	-23	-1	-23	1	multi-exon	FALSE	canonical	3	718	junction_2	4	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTCTGTGCTTTCAG	NA	False	NA	0	True	AATAAA	-21	NA	70130691	70128948	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_70129297_70129763_70129841_70130481
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006414	chr11	-	3440	17	FSM	ENSMUSG00000018921.12	ENSMUST00000019065.10	3435	17	-3	-2	0	2	multi-exon	FALSE	canonical	3	551	junction_9	48.6591701917532	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGTGCTGCTTTGGCTCT	NA	False	NA	-25	True	AATAAA	-15	NA	70300857	70283706	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_70283849_70284587_70286019_70286127_70286335_70286485_70286542_70287111_70287272_70287381_70287530_70287643_70287761_70287840_70287930_70288275_70288364_70288468_70288599_70288891_70289043_70289306_70289367_70292475_70292548_70292742_70292893_70296452_70296559_70297082_70297148_70300589
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006424	chr11	+	942	3	FSM	ENSMUSG00000018923.14	ENSMUST00000019067.8	902	3	-35	-5	-35	5	multi-exon	FALSE	canonical	3	117	junction_2	11	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCTCTCTCTCGCTCTCT	NA	False	NA	NA	False	AATAAA	-25	NA	70342709	70344558	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_70342890_70343033_70343165_70343927
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006441	chr11	-	1684	8	FSM	ENSMUSG00000014606.15	ENSMUST00000014750.15	1711	8	27	0	27	0	multi-exon	FALSE	canonical	3	687	junction_5	58.5020495018625	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAAAGTCGTAACT	NA	False	NA	0	True	ATTAAA	-28	NA	70537857	70535021	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006446	chr11	+	1882	9	FSM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	-49	0	3	0	multi-exon	FALSE	canonical	3	485	junction_5	18.8244355825082	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9141	False	NA	30	True	AATAAA	-31	NA	70538063	70542247	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006449	chr11	+	1766	10	NNC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_1	154.113954952532	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9166	False	NA	30	True	AATAAA	-31	NA	70538088	70542247	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_70538140_70538230_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006491	chr11	-	2438	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	-19	-30	0	0	multi-exon	FALSE	canonical	3	409	junction_6	121.230008016786	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTTTACAATTAAAGT	NA	False	NA	1	True	AATAAA	-31	NA	70860799	70833897	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006492	chr11	-	2453	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108531.8	2453	17	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	132.716744893024	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTTTACAATTAAAGT	NA	False	NA	1	True	AATAAA	-31	NA	70860799	70833897	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006503	chr11	+	1576	6	NIC	ENSMUSG00000018449.13	novel	1100	7	NA	NA	-5	-1	intron_retention	FALSE	canonical	3	224	junction_4	52.6748516846512	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGGTGTTCTGATGTGG	NA	False	NA	16	True	ATTAAA	-17	NA	70861300	70868630	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70865867_70868483
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006526	chr11	+	2537	3	FSM	ENSMUSG00000040599.14	ENSMUST00000133413.8	344	3	0	-2193	0	0	multi-exon	FALSE	canonical	3	36	junction_1	44	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTATTATTGCTTAAT	NA	False	NA	16	True	AATAAA	-37	NA	70910436	70918197	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_70910550_70915375_70915538_70915935
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006546	chr11	+	252	1	ISM	ENSMUSG00000020803.4	ENSMUST00000021158.4	981	4	1992	225	1924	-225	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGTTTTTTAACACGTGG	NA	False	NA	19	True	AATAAA	-19	NA	72100364	72100616	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_72100400_72100600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006555	chr11	-	986	6	NNC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	4505	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_5	10.6320270880016	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72247617	72235547	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72247574
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006619	chr11	+	653	1	ISM	ENSMUSG00000038335.14	ENSMUST00000045807.14	3389	15	10610	2	3477	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	24	True	AATAAA	-16	NA	74799513	74800166	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_74799500_74800200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006636	chr11	-	1443	8	FSM	ENSMUSG00000000753.16	ENSMUST00000000769.14	1832	8	129	260	14	35	multi-exon	TRUE	canonical	3	25	junction_1	3.91751691451488	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGCTTCTTCCTTCTCC	5507	False	NA	2	True	AATAAA	-16	NA	75313398	75300854	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_75301220_75301659_75301871_75304732_75304876_75305746_75305951_75306400_75306557_75307055_75307255_75308734_75308823_75313321
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006672	chr11	-	2252	1	ISM	ENSMUSG00000017286.16	ENSMUST00000169701.8	4203	9	30841	0	26750	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGCCTTTCTCAGAAG	NA	False	NA	-1	True	AATAAA	-22	NA	76103648	76101396	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_76101400_76103600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006688	chr11	-	1723	8	NNC	ENSMUSG00000020844.7	novel	2755	8	NA	NA	111695	-760	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	32.3412922387691	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTTACTGTGTGCTTAGTT	1423	False	NA	-5	True	NA	NA	NA	76178199	76148783	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76178031
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006697	chr11	+	870	3	FSM	ENSMUSG00000020843.16	ENSMUST00000152183.2	362	3	-13	-495	-13	248	multi-exon	FALSE	canonical	3	21	junction_1	125	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTATCTTTGCTGTCCT	NA	False	NA	22	True	AGTAAA	-32	NA	76298003	76305403	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_76298269_76301952_76302026_76304871
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006701	chr11	+	209	1	Intergenic	novelGene_42	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTATTTTGTATGGGT	NA	False	NA	NA	False	AAGAAA	-5	NA	76302252	76302461	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_76302300_76302500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006704	chr11	+	244	1	ISM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	7186	1720	7124	243	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTTAGTATCTTTGCT	NA	False	NA	17	True	AGTAAA	-27	NA	76305154	76305398	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_76305200_76305400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006716	chr11	-	977	9	NNC	ENSMUSG00000010392.9	novel	4289	9	NA	NA	0	-3294	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_7	80.3270657997664	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAAGGTTTCCGTTGCTGT	NA	False	NA	NA	False	AATACA	-30	NA	76654393	76620721	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652066_76652182_76654345
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006732	chr11	-	3106	7	FSM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	-2	10	-2	-10	multi-exon	FALSE	canonical	3	222	junction_6	27.2457947825593	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTGGAACCTGACATCC	NA	False	NA	-15	True	AATAAA	-18	NA	76969263	76935127	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_76937581_76939178_76939288_76940098_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76969204
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006740	chr11	+	193	1	Intergenic	novelGene_43	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATAGCTACTCCAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	77280601	77280794	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_77280600_77280800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006741	chr11	-	1407	7	FSM	ENSMUSG00000044328.14	ENSMUST00000060417.11	1463	7	50	6	50	-6	multi-exon	FALSE	canonical	3	152	junction_1	13.984117975602	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGAGTCGTTGGGAGATT	NA	False	NA	-5	True	ATTAAA	-15	NA	77404146	77398930	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_77399204_77399282_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403722_77403792_77403985
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006748	chr11	+	202	1	Intergenic	novelGene_44	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTAGGAGAAAGCCTGGTG	NA	False	NA	NA	False	NA	NA	NA	77490149	77490351	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_77490100_77490400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006751	chr11	+	185	1	Intergenic	novelGene_45	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTTTGAAAATTTATTA	NA	False	NA	NA	False	NA	NA	NA	77564836	77565021	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_77564800_77565000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006753	chr11	+	3207	4	FSM	ENSMUSG00000037857.17	ENSMUST00000100802.11	5158	4	-16	1967	-16	-1967	multi-exon	FALSE	canonical	3	165	junction_1	19.0146142626022	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATGAAAACTGTCTTGTT	NA	False	NA	NA	False	AAAAAG	-11	NA	77576964	77601600	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_77577334_77582367_77584081_77596334_77596368_77600508
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006771	chr11	-	1992	10	NNC	ENSMUSG00000020832.15	novel	2014	10	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	63.2223198593271	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971198	77964201	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_77965001_77965105_77965187_77965314_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006807	chr11	+	1711	10	FSM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	-21	-5	-21	0	multi-exon	FALSE	canonical	3	127	junction_1	10.0443461155462	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTCTTTAAAGATTTA	6353	False	NA	26	True	ATTAAA	-20	NA	78079583	78083019	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006815	chr11	+	941	4	NNC	ENSMUSG00000002064.11	novel	1268	3	NA	NA	245	-4	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	99.5199589138893	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGTGTGGTCATTTAT	NA	False	NA	15	True	NA	NA	NA	78136816	78146318	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_78136997_78141841_78142039_78145676_78145738_78145815
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006825	chr11	+	2313	11	NIC	ENSMUSG00000041958.11	novel	2501	12	NA	NA	37	-11	combination_of_known_splicesites	FALSE	canonical	3	77	junction_1	151.766300607216	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGATATGGATGACCATAA	NA	False	NA	17	True	NA	NA	NA	78219277	78233597	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_+_78219335_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006834	chr11	+	1966	5	FSM	ENSMUSG00000020829.10	ENSMUST00000001126.4	1978	5	12	0	12	0	multi-exon	FALSE	canonical	3	60	junction_1	12.7549010188241	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGCTTTGGGGCTTTCTG	8349	False	NA	26	True	AGTAAA	-27	NA	78356534	78362771	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_78356832_78357176_78358030_78359450_78359535_78361520_78361678_78362196
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006866	chr11	-	599	1	ISM	ENSMUSG00000037278.10	ENSMUST00000103242.5	1375	3	8362	0	8362	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTGTTGTGTGGAT	4050	False	NA	-7	True	AATAAA	-23	NA	78433241	78432642	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_78432600_78433200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006870	chr11	-	184	1	FSM	ENSMUSG00000082110.2	ENSMUST00000119052.2	395	1	234	-23	234	23	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATAATTTTTAGGTTT	NA	False	NA	NA	False	AATAAA	-23	NA	78476147	78475963	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_78476000_78476100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006881	chr11	-	381	1	ISM	ENSMUSG00000017677.12	ENSMUST00000017821.12	2476	9	14908	11	3186	5	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGCCGATATTTCTTTCA	9500	False	NA	-19	True	ATTAAA	-17	NA	79130589	79130208	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_79130200_79130600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006883	chr11	-	2469	9	FSM	ENSMUSG00000017677.12	ENSMUST00000017821.12	2476	9	-4	11	-4	5	multi-exon	FALSE	canonical	3	217	junction_4	86.5338625914734	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGCCGATATTTCTTTCA	971	False	NA	-19	True	ATTAAA	-17	NA	79145501	79130208	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006884	chr11	-	2642	10	NIC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	5	combination_of_known_junctions	FALSE	canonical	3	45	junction_4	142.650916403006	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGCCGATATTTCTTTCA	974	False	NA	-19	True	ATTAAA	-17	NA	79145498	79130208	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79134225_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006897	chr11	-	214	1	Intergenic	novelGene_46	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTTCTTTTAAATTTT	NA	False	NA	NA	False	NA	NA	NA	79276662	79276448	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_-_79276400_79276700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006909	chr11	+	374	1	Intergenic	novelGene_47	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGGTTGATCACCTC	NA	False	NA	25	True	NA	NA	NA	79865641	79866015	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_79865600_79866000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006919	chr11	-	2343	8	NIC	ENSMUSG00000017561.17	novel	2396	8	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	246.701505169833	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATTTTGTGGTTTTTTGT	4537	False	NA	-3	True	AATAAA	-20	NA	79971768	79937318	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971613
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006923	chr11	-	1316	4	FSM	ENSMUSG00000046909.10	ENSMUST00000050207.10	1309	4	-3	-4	-3	4	multi-exon	FALSE	canonical	3	265	junction_2	2.16024689946929	374	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTCTTTGCTTAAGTTC	NA	False	NA	0	True	AATAAA	-18	NA	80033004	80027499	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_80028106_80028743_80028894_80030691_80031150_80032902
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006938	chr11	+	1819	4	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	18	-3	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	17.6131264181639	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGTGTTGAGTTCATTG	NA	False	NA	31	True	NA	NA	NA	80074694	80090580	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_+_80075082_80084711_80084875_80087698_80087774_80089386
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006944	chr11	+	2266	11	FSM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	-21	0	3	0	multi-exon	FALSE	canonical	3	695	junction_8	108.208317610062	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGATACATGATTGAAT	NA	False	NA	130	True	AATAAA	-18	NA	80274107	80287074	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006947	chr11	+	2342	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	-98	-682	-4	0	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGATACATGATTGAAT	NA	False	NA	130	True	AATAAA	-18	NA	80274124	80287074	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006961	chr11	-	182	1	Intergenic	novelGene_48	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTCCTCGAGACAGG	NA	False	NA	-2	True	NA	NA	NA	80317447	80317265	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_-_80317300_80317400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006968	chr11	+	1691	13	FSM	ENSMUSG00000017428.17	ENSMUST00000173938.8	1626	13	-8	-57	0	57	multi-exon	FALSE	canonical	3	918	junction_5	64.9491253897148	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAAAGCTGTGCTCTCTGC	NA	False	NA	13	True	NA	NA	NA	80319440	80362792	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000006997	chr11	+	2049	17	NNC	ENSMUSG00000020680.16	novel	2068	16	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_15	27.3723600325219	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAGTGCATTATTTGTC	8654	False	NA	41	True	AATAAA	-21	NA	83363911	83397569	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395558_83395582_83395931_83397243
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007015	chr11	-	1082	4	NNC	ENSMUSG00000019122.9	novel	3006	4	NA	NA	-3699	660	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	12.9614813968157	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGTCTGCCTCTTTTGC	NA	False	NA	1	True	AATAAA	-20	NA	83473161	83465483	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_83466322_83466668_83466778_83467200_83467273_83473098
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007048	chr11	-	2526	13	FSM	ENSMUSG00000020530.15	ENSMUST00000154915.9	2528	13	226	-224	226	-221	multi-exon	FALSE	canonical	3	231	junction_7	87.5523256242929	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAGAATGTGGTGTACAT	NA	False	NA	-6	True	AATAAA	-20	NA	84760802	84723407	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007049	chr11	-	2532	13	ISM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	762	221	226	-221	3prime_fragment	FALSE	canonical	3	268	junction_7	78.9034219790245	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAGAATGTGGTGTACAT	NA	False	NA	-6	True	AATAAA	-20	NA	84760802	84723407	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007053	chr11	-	1354	6	NIC	ENSMUSG00000020530.15	novel	386	4	NA	NA	226	551	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	192.335748107314	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTGTTTTGTTTGTAT	NA	False	NA	0	True	ATTAAA	-16	NA	84760802	84742656	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_84743363_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007069	chr11	+	1149	1	ISM	ENSMUSG00000085208.4	ENSMUST00000128960.2	4423	2	7029	1645	7016	-1645	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCGTCTCTGTTTCTGTG	NA	False	NA	9	True	NA	NA	NA	86099224	86100373	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_86099200_86100400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007083	chr11	-	1182	6	NNC	ENSMUSG00000018171.10	novel	2787	12	NA	NA	-19012	237	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_5	277.055517902098	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCCGTTTTCTTTAGT	NA	False	NA	0	True	TATAAA	-23	NA	86512133	86475518	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86512073
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007089	chr11	-	762	1	NIC	ENSMUSG00000018171.10	novel	2787	12	NA	NA	1427	237	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCCGTTTTCTTTAGT	8976	False	NA	0	True	TATAAA	-23	NA	86476280	86475518	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_86475500_86476300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007098	chr11	+	775	3	NNC	ENSMUSG00000072582.10	novel	3132	3	NA	NA	89	-2267	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTCCCATGTTCCTCT	NA	False	NA	19	True	AATAAA	-26	NA	86574899	86581016	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_86574950_86578861_86578955_86580384
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007106	chr11	-	2800	18	FSM	ENSMUSG00000018425.19	ENSMUST00000018569.14	3813	18	114	899	114	-899	multi-exon	FALSE	canonical	3	128	junction_4	18.4312056730034	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAGGCCTTCTTATTGCT	8641	False	NA	-1	True	ATTAAA	-21	NA	86698458	86660570	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86698263
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007119	chr11	+	187	1	Intergenic	novelGene_49	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGTGATAGGAAAATTC	NA	False	NA	NA	False	NA	NA	NA	87085465	87085652	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_87085500_87085700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007128	chr11	+	215	1	FSM	ENSMUSG00000119262.1	ENSMUST00000240253.1	215	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGGTTTATCTTAAAGGGT	2419	False	NA	NA	False	NA	NA	NA	87334062	87334277	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_87334100_87334300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007137	chr11	-	176	1	Intergenic	novelGene_50	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAGGAAGCAAGAGA	NA	False	NA	-1	True	NA	NA	NA	87374931	87374755	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_-_87374800_87374900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007139	chr11	+	742	5	FSM	ENSMUSG00000020485.15	ENSMUST00000093955.12	706	5	-25	-11	-25	5	multi-exon	FALSE	canonical	3	512	junction_3	25.7972866790289	314	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGGCCTGTGCCTTGTGT	NA	False	NA	13	True	AATAAA	-30	NA	87628352	87634454	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_87628495_87628992_87629100_87633621_87633678_87633883_87633938_87634071
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007147	chr11	+	2499	18	FSM	ENSMUSG00000034121.13	ENSMUST00000038196.7	2499	18	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	22.9555008070187	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	6456	False	NA	18	True	TATAAA	-20	NA	87744040	87754629	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007154	chr11	-	126	1	ISM	ENSMUSG00000020483.15	ENSMUST00000178105.3	2187	2	2624	1738	2624	-1108	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTTTAGTTGCCTGGG	3315	False	NA	-24	True	AGTAAA	-16	NA	87872214	87872088	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_87872100_87872200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007161	chr11	+	190	1	Intergenic	novelGene_51	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAACAGTGTGCTGTGTTT	79	False	NA	NA	False	NA	NA	NA	87932027	87932217	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_87932000_87932200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007180	chr11	-	2091	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	9	-3	9	3	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	645	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCTGAAAATTCTGTTCTG	5210	False	NA	-6	True	AATAAA	-23	NA	88846282	88814842	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007191	chr11	-	845	2	FSM	ENSMUSG00000057534.14	ENSMUST00000061938.14	819	2	-26	0	-12	0	multi-exon	FALSE	canonical	3	61	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	6793	False	NA	0	True	AATAAA	-26	NA	88857769	88855483	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_88856100_88857540
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007196	chr11	+	1069	4	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-2719	-17540	at_least_one_novel_splicesite	FALSE	canonical	3	287	junction_3	341.385738164649	42	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	6712	False	NA	NA	False	NA	NA	NA	88858358	88864240	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_88858476_88861243_88861306_88861723_88861820_88863446
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007201	chr11	+	866	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-39	-17540	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	887	63	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	9392	False	NA	NA	False	NA	NA	NA	88861038	88864240	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_88861049_88861243_88861306_88863446
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007202	chr11	+	667	4	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-39	-17835	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	444.918719168644	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	9392	False	NA	15	True	AATAAA	-26	NA	88861038	88863945	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_88861049_88861243_88861306_88861723_88861820_88863446
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007210	chr11	+	599	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	0	-17835	at_least_one_novel_splicesite	FALSE	canonical	3	258	junction_1	758	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	9431	False	NA	15	True	AATAAA	-26	NA	88861077	88863945	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_88861116_88861243_88861306_88863446
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007214	chr11	+	1118	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	0	-17540	intron_retention	FALSE	canonical	3	287	junction_2	383.5	34	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	9431	False	NA	NA	False	NA	NA	NA	88861077	88864240	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_88861306_88861723_88861820_88863446
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007228	chr11	+	1657	1	ISM	ENSMUSG00000003948.18	ENSMUST00000004050.7	2677	7	27441	16	27441	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATTGTCTGGAGCATAT	NA	False	NA	13	True	AATAAA	-18	NA	90167742	90169399	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_90167700_90169400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007258	chr11	-	546	1	FSM	ENSMUSG00000081604.6	ENSMUST00000118048.2	411	1	-50	-85	-50	85	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAATAAATAAATCTCAAAA	NA	False	NA	NA	False	NA	NA	NA	93928504	93927958	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_93928000_93928500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007265	chr11	-	1949	11	FSM	ENSMUSG00000020863.16	ENSMUST00000107821.9	2050	11	25	76	-5	2	multi-exon	FALSE	canonical	3	229	junction_1	26.33172990899	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGATTGTCTGTGTCATTG	NA	False	NA	-3	True	AATAAA	-25	NA	94212789	94181962	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_94182405_94183910_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007281	chr11	+	186	1	Intergenic	novelGene_52	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCCTGTTTGAGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	94293083	94293269	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_94293100_94293300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007298	chr11	+	829	4	FSM	ENSMUSG00000024414.14	ENSMUST00000132813.8	655	4	-9	-165	0	-6	multi-exon	FALSE	canonical	3	14	junction_1	381.100453365718	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGAGATGGAAAGGGACA	NA	False	NA	13	True	NA	NA	NA	94544592	94550909	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_94544668_94547233_94547445_94547808_94547877_94550434
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007300	chr11	+	840	4	FSM	ENSMUSG00000024414.14	ENSMUST00000125148.2	439	4	-21	-380	-1	8	multi-exon	FALSE	canonical	3	93	junction_1	344.111416065592	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACAGGACAGGTGGCTGC	NA	False	NA	27	True	NA	NA	NA	94544835	94550923	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_94544987_94547312_94547445_94547808_94547877_94550434
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007306	chr11	+	200	1	Intergenic	novelGene_53	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGGAAAATTTAAAGAAAAG	262	False	NA	NA	False	NA	NA	NA	94946079	94946279	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_94946100_94946300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007312	chr11	-	3430	14	FSM	ENSMUSG00000038909.17	ENSMUST00000107733.10	3470	14	40	0	2	0	multi-exon	FALSE	canonical	3	281	junction_9	177.090656421269	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201032	95165084	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007319	chr11	-	1633	1	NIC	ENSMUSG00000038909.17	novel	3414	15	NA	NA	6003	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95166717	95165084	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_95165100_95166700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007353	chr11	-	2841	15	FSM	ENSMUSG00000013415.10	ENSMUST00000013559.3	8378	15	-6	5543	-6	730	multi-exon	FALSE	canonical	3	452	junction_5	71.7782867514933	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTATGGCTGAGCTCTTG	NA	False	NA	30	True	AAAAAG	-4	NA	95896772	95853531	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007368	chr11	+	208	1	Intergenic	novelGene_54	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCTAATAATCATTTCT	NA	False	NA	NA	False	NA	NA	NA	95904299	95904507	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_95904300_95904500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007377	chr11	-	1621	1	ISM	ENSMUSG00000014349.8	ENSMUST00000100528.5	3997	7	15279	1057	15279	-1057	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCGCCTGTGGGTGTGGG	NA	False	NA	-1	True	AATAAA	-21	NA	95940935	95939314	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_95939300_95940900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007380	chr11	-	635	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107684.2	596	5	-30	-9	21	6	multi-exon	FALSE	canonical	3	5157	junction_4	2293.78611688187	1378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGCCTGTCTTTCTA	3500	False	NA	0	True	NA	NA	NA	95966475	95963806	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966382
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007393	chr11	-	189	1	ISM	ENSMUSG00000006057.16	ENSMUST00000090541.12	4715	5	2496	4134	1863	1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGCCTGTCT	5975	False	NA	-5	True	NA	NA	NA	95964000	95963811	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_95963800_95964000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007395	chr11	-	482	4	NIC	ENSMUSG00000006057.16	novel	4715	5	NA	NA	21	1	combination_of_known_splicesites	FALSE	canonical	3	102	junction_2	4497.34072042085	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGCCTGTCT	3500	False	NA	-5	True	NA	NA	NA	95966475	95963811	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_95964045_95964348_95964528_95965812_95965860_95966452
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007405	chr11	-	2060	6	FSM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	-28	-411	-28	411	multi-exon	FALSE	canonical	3	294	junction_5	66.2751838926155	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTCCTAGTGAATCACAG	4183	False	NA	-18	True	AATAAA	-17	NA	96002818	95989740	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_95991229_95993473_95993579_95994042_95994177_95994283_95994387_95998256_95998431_96002762
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007417	chr11	-	2171	8	FSM	ENSMUSG00000020876.15	ENSMUST00000107661.10	2197	8	28	-2	0	2	multi-exon	FALSE	canonical	3	35	junction_6	17.839419776416	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTTGTTGCAATTTGTG	NA	False	NA	-14	True	AATAAA	-15	NA	96668357	96658700	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96667793_96667888_96668280
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007423	chr11	+	1172	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	-2	7	at_least_one_novel_splicesite	FALSE	canonical	3	188	junction_5	206.095705923243	95	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTCTTTTTTTTTCCC	NA	False	NA	22	True	AATAAA	-23	NA	96679960	96698982	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96698628
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007425	chr11	+	1023	5	NNC	ENSMUSG00000018666.14	novel	912	5	NA	NA	-2	7	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_4	247.637335634189	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTCTTTTTTTTTCCC	NA	False	NA	22	True	AATAAA	-23	NA	96679960	96698982	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96698628
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007445	chr11	-	3536	4	FSM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	-6	17	-6	0	multi-exon	FALSE	canonical	3	378	junction_3	463.171914327955	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	-23	True	AATAAA	-16	NA	96714845	96708256	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714770
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007475	chr11	+	1544	8	FSM	ENSMUSG00000020877.12	ENSMUST00000021249.11	1530	8	-12	-2	-12	2	multi-exon	FALSE	canonical	3	80	junction_5	16.9597362320652	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGATCTCAAGTCTATTGA	NA	False	NA	19	True	AATAAA	-25	NA	96920751	96924786	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_96920882_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96923797_96923889_96924056_96924144_96924326_96924491
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007484	chr11	+	1595	6	ISM	ENSMUSG00000038534.20	ENSMUST00000168565.2	3535	24	14948	0	-1115	0	3prime_fragment	FALSE	canonical	3	70	junction_1	34.0141147172758	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	NA	False	NA	22	True	AATAAA	-18	NA	96956593	96959730	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007508	chr11	+	1153	3	ISM	ENSMUSG00000085860.2	ENSMUST00000131687.2	612	4	0	3566	0	296	5prime_fragment	FALSE	canonical	3	106	junction_2	5.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGAAGTTTCTACCCT	NA	False	NA	NA	False	NA	NA	NA	97489336	97510153	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_97489494_97505749_97505855_97509262
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007518	chr11	+	711	3	NNC	ENSMUSG00000078695.9	novel	737	3	NA	NA	7	0	intron_retention	FALSE	canonical	3	62	junction_1	514.5	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2459	False	NA	-1	True	AATAAA	-21	NA	97576785	97579447	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_97577042_97577345_97577447_97579093
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007529	chr11	-	3132	10	FSM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	-25	-2	-25	2	multi-exon	FALSE	canonical	3	107	junction_2	12.1969435556112	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTAGAGCGATCTACCA	7410	False	NA	-19	True	AATAAA	-21	NA	97657407	97636438	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_97638296_97638786_97638949_97641697_97641788_97643395_97643590_97644041_97644106_97644730_97644859_97646976_97647047_97648398_97648636_97654034_97654208_97657250
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007540	chr11	-	476	5	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-10	5	at_least_one_novel_splicesite	FALSE	canonical	3	613	junction_3	5440.57875482931	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTCTTCTTGACACCTT	NA	False	NA	-30	True	ATTAAA	-16	NA	97673218	97668858	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_97668991_97669090_97669205_97672159_97672257_97672631_97672716_97673169
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007542	chr11	-	788	5	FSM	ENSMUSG00000071415.7	ENSMUST00000151118.2	728	5	-55	-5	31	5	multi-exon	FALSE	canonical	3	20	junction_4	6071.74712809254	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTCTTCTTGACACCTT	NA	False	NA	-30	True	ATTAAA	-16	NA	97673157	97668858	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97672828
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007556	chr11	+	847	1	Genic_Genomic	ENSMUSG00000038366.16	novel	NA	NA	NA	NA	4495	1	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGGCTTCTTCCTCTTTGA	1929	False	NA	11	True	AATAAA	-22	NA	97728744	97729591	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr11_+_97728700_97729600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007578	chr11	+	697	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	-3	-15	at_least_one_novel_splicesite	FALSE	canonical	3	1994	junction_1	5636.22526164453	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	0	True	AATAAA	-18	NA	97917779	97921303	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_97917817_97918657_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007588	chr11	+	429	1	Intergenic	novelGene_55	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAAGGAAATAATGTGAA	NA	False	NA	NA	False	NA	NA	NA	97958414	97958843	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_97958400_97958800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007602	chr11	+	203	1	Intergenic	novelGene_56	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTGTGCCACCACTGCCA	NA	False	NA	NA	False	NA	NA	NA	98077632	98077835	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_98077600_98077800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007609	chr11	+	165	1	Intergenic	novelGene_57	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTGGTGAGATGGCTC	NA	False	NA	NA	False	NA	NA	NA	98286416	98286581	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_98286400_98286600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007611	chr11	-	757	4	FSM	ENSMUSG00000002580.8	ENSMUST00000002655.8	747	4	-10	0	-10	0	multi-exon	FALSE	canonical	3	749	junction_2	62.9567752950829	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCGTGTGTTTATGTCCA	NA	False	NA	1	True	AATAAA	-26	NA	98329827	98328533	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_98328972_98329062_98329140_98329472_98329571_98329683
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007634	chr11	+	2055	9	ISM	ENSMUSG00000058756.14	ENSMUST00000064187.12	2452	10	11680	0	-95	0	3prime_fragment	FALSE	canonical	3	14	junction_5	13.1808336231059	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGTGTGCCTCCTCCAGG	NA	False	NA	29	True	NA	NA	NA	98644316	98659832	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_98644465_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354_98654614_98655103_98655232_98658982
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007644	chr11	+	2573	12	FSM	ENSMUSG00000017499.16	ENSMUST00000092706.13	4614	12	1	2040	1	3	multi-exon	FALSE	canonical	3	550	junction_4	61.3919799860826	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGGCTGCATTTGTTG	18	False	NA	11	True	AATATA	-20	NA	98798627	98812722	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007714	chr11	+	1729	3	FSM	ENSMUSG00000035530.14	ENSMUST00000139846.2	447	3	-532	-750	101	3	multi-exon	FALSE	canonical	3	12221	junction_1	273.5	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTCCAGATTGCACTTG	4058	False	NA	24	True	AATAAA	-20	NA	100210811	100212925	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_100211656_100211773_100211876_100212142
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007720	chr11	-	357	1	ISM	ENSMUSG00000006930.16	ENSMUST00000138603.9	3316	12	8445	0	4222	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGTCTCAGTTGTGTT	9137	False	NA	-2	True	AATAAA	-17	NA	100238509	100238152	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_100238200_100238500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007723	chr11	-	3656	11	FSM	ENSMUSG00000006930.16	ENSMUST00000103124.11	2120	11	-6	-1530	-6	-2	multi-exon	FALSE	canonical	3	486	junction_1	44.9070150421958	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCCTGTCTCAGTTGTG	2042	False	NA	-4	True	AATAAA	-15	NA	100246919	100238154	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007730	chr11	-	143	1	ISM	ENSMUSG00000001552.15	ENSMUST00000124659.2	2913	2	1955	1661	1955	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	8364	False	NA	-17	True	AATAAA	-18	NA	100261587	100261444	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_100261400_100261600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007732	chr11	-	3243	14	FSM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	-38	0	-24	0	multi-exon	FALSE	canonical	3	399	junction_13	65.0294425807792	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	-17	True	AATAAA	-18	NA	100288613	100261444	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100288461
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007742	chr11	-	102	1	Genic_Genomic	ENSMUSG00000017176.18	novel	NA	NA	NA	NA	2091	1	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACGCGTCTTTAATCCCA	2767	False	NA	-1	True	ATTAAA	-20	NA	100320279	100320177	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr11_-_100320200_100320300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007743	chr11	-	1402	9	FSM	ENSMUSG00000017176.18	ENSMUST00000092688.12	1399	9	-2	-1	-2	1	multi-exon	FALSE	canonical	3	274	junction_8	92.107868149252	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACGCGTCTTTAATCCCA	NA	False	NA	-1	True	ATTAAA	-20	NA	100331917	100320177	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007756	chr11	-	4265	28	FSM	ENSMUSG00000020917.18	ENSMUST00000007131.16	4393	28	131	-3	0	0	multi-exon	FALSE	canonical	3	2198	junction_15	363.337822300204	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATGCTCTTTTATGTTC	NA	False	NA	-14	True	AATAAA	-18	NA	100418695	100367178	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007761	chr11	-	4296	29	FSM	ENSMUSG00000020917.18	ENSMUST00000107389.8	4426	29	128	2	-3	1	multi-exon	FALSE	canonical	3	1365	junction_16	642.699119466695	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGTGATGCTCTTTTATGT	NA	False	NA	-16	True	AATAAA	-16	NA	100418698	100367180	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007784	chr11	+	1968	5	NIC	ENSMUSG00000017837.13	novel	988	6	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_3	123.71413621733	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCCGTCCCCTACCCCT	NA	False	NA	17	True	AATAAA	-24	NA	100513738	100518433	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_+_100513835_100515017_100515126_100515768_100515843_100515934_100516011_100516819
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007799	chr11	+	200	1	Intergenic	novelGene_58	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAGAAACAGCTTAATG	NA	False	NA	NA	False	NA	NA	NA	100704049	100704249	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_100704000_100704200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007811	chr11	+	2346	9	FSM	ENSMUSG00000001755.13	ENSMUST00000107308.4	2386	9	40	0	40	0	multi-exon	FALSE	canonical	3	125	junction_1	20.9388992069784	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3611	False	NA	25	True	ATTAAA	-16	NA	100973490	100977445	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007814	chr11	+	374	1	NIC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	2351	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	7192	False	NA	25	True	ATTAAA	-16	NA	100977071	100977445	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_+_100977100_100977400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007832	chr11	+	1654	11	FSM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	152	-4	152	4	multi-exon	TRUE	canonical	3	373	junction_8	104.461715475096	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCCGGTCTCTGAATTCA	1382	False	NA	20	True	AATAAA	-23	NA	101010915	101017249	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007840	chr11	+	1117	6	FSM	ENSMUSG00000078656.12	ENSMUST00000042477.13	1106	6	-9	-2	-9	2	multi-exon	FALSE	canonical	3	1136	junction_3	45.4682306671372	652	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGTTACTACTGCTGAA	NA	False	NA	22	True	ATTAAA	-19	NA	101144523	101150377	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149735
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007855	chr11	-	734	2	FSM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	157	-5	-14	5	multi-exon	FALSE	canonical	3	1870	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGTGTGTGGGGGCAGAG	5659	False	NA	0	True	AATAAA	-25	NA	101169783	101168788	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_101169279_101169539
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007897	chr11	+	1455	3	NIC	ENSMUSG00000063316.14	novel	732	4	NA	NA	-20	0	intron_retention	FALSE	canonical	3	8302	junction_2	2434	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2361	False	NA	62	True	ATTAAA	-18	NA	101333243	101336355	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_+_101334497_101336045_101336157_101336264
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007929	chr11	+	1139	7	FSM	ENSMUSG00000010362.10	ENSMUST00000010506.10	1124	7	-15	0	-15	0	multi-exon	FALSE	canonical	3	866	junction_2	120.614284210269	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTGTGGTTTGGGTCCC	NA	False	NA	29	True	AATAAA	-28	NA	101518752	101526926	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007936	chr11	+	1060	7	NNC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	9	-13	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	436.61755449007	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTCTTGTAAATAGTGTG	NA	False	NA	16	True	AATAAA	-15	NA	101518776	101526913	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_101518849_101519098_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007945	chr11	+	1077	7	NNC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	-12	-13	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	433.752873829737	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTCTTGTAAATAGTGTG	NA	False	NA	16	True	AATAAA	-15	NA	101518785	101526913	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_101518891_101519114_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007961	chr11	-	1589	4	NIC	ENSMUSG00000020921.7	novel	1574	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	131.230924539742	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	4514	False	NA	0	True	AATAAA	-16	NA	102047181	102043371	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_102044421_102045382_102045530_102046549_102046731_102046969
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000007991	chr11	-	305	1	ISM	ENSMUSG00000020923.18	ENSMUST00000174302.8	4692	21	12801	1431	3145	2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCGGCTGCCGTCTCTGTT	NA	False	NA	-7	True	NA	NA	NA	102197121	102196816	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_102196800_102197100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008006	chr11	-	1533	12	NIC	ENSMUSG00000018677.10	novel	1685	12	NA	NA	9	3	combination_of_known_junctions	TRUE	canonical	3	113	junction_11	1345.10671179491	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGCTGTAGTGTCTTG	7295	False	NA	98	True	NA	NA	NA	102298763	102293967	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008061	chr11	-	348	2	ISM	ENSMUSG00000020940.14	ENSMUST00000021323.11	1199	10	9059	-1	9033	1	3prime_fragment	FALSE	canonical	3	22	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGCGCCTAGTGGGAT	NA	False	NA	NA	False	AGTAAA	-18	NA	103090315	103089768	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_103089945_103090143
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008066	chr11	+	218	1	Intergenic	novelGene_59	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCCTGCTATCAATCAAG	2931	False	NA	NA	False	NA	NA	NA	103363420	103363638	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_103363400_103363600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008080	chr11	-	3734	21	FSM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	32	0	0	0	multi-exon	FALSE	canonical	3	278	junction_14	21.9246436687122	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTATAGACCAGTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	103844850	103712607	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008111	chr11	+	2041	10	ISM	ENSMUSG00000020694.18	ENSMUST00000126175.8	3086	20	71302	-1	509	0	3prime_fragment	FALSE	canonical	3	279	junction_7	25.3727763119801	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCCTGGATTCTCTGAT	NA	False	NA	26	True	AATAAA	-19	NA	105144126	105173003	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662_105166775_105169943_105170052_105171910
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008114	chr11	+	229	1	Intergenic	novelGene_60	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATTAAGCTAAAAACAAGAT	4116	False	NA	NA	False	NA	NA	NA	105788934	105789163	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_105788900_105789200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008116	chr11	-	2765	7	NIC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	64.1320252811859	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105834983	105824527	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105830925_105831205_105834936
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008127	chr11	+	1372	5	FSM	ENSMUSG00000001983.8	ENSMUST00000002048.8	1383	5	0	11	0	-11	multi-exon	FALSE	canonical	3	51	junction_3	5.93717104351896	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTGGTATGACTCTTG	874	False	NA	15	True	NA	NA	NA	105956886	105964427	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_105957345_105960331_105960439_105962692_105962821_105963356_105963535_105963926
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008141	chr11	+	191	1	Intergenic	novelGene_61	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTCACACTATACAGCA	7648	False	NA	NA	False	NA	NA	NA	106062549	106062740	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_106062500_106062700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008148	chr11	+	4003	18	FSM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	9	-1	9	1	multi-exon	FALSE	canonical	2	294	junction_3	62.7187383355908	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTTATCTTTTTATTC	NA	False	NA	29	True	ATTAAA	-16	NA	106107760	106139966	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008151	chr11	+	1368	1	Genic_Genomic	ENSMUSG00000020705.7	novel	NA	NA	NA	NA	10777	1	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTTATCTTTTTATTC	NA	False	NA	29	True	ATTAAA	-16	NA	106138598	106139966	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr11_+_106138600_106140000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008157	chr11	-	261	1	Genic_Genomic	ENSMUSG00000020706.14	novel	NA	NA	NA	NA	1300	4	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTCTGATAGTTTAATAA	NA	False	NA	-10	True	AATAAA	-17	NA	106140224	106139963	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr11_-_106140000_106140200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008163	chr11	+	1401	10	FSM	ENSMUSG00000020708.13	ENSMUST00000133131.2	1394	10	-2	-5	-2	5	multi-exon	FALSE	canonical	3	2261	junction_6	179.113523556954	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTCCAGTTTGTTAATAC	4534	False	NA	20	True	AATAAA	-24	NA	106146977	106153951	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153518_106153622_106153710_106153834
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008188	chr11	-	3256	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9023	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_15	360.626097533473	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	401	False	NA	-9	True	AATAAA	-19	NA	106615243	106545042	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008215	chr11	-	1905	1	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	1392	0	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	1575	False	NA	-8	True	AATAAA	-18	NA	106673085	106671180	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_106671200_106673100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008221	chr11	-	3595	12	FSM	ENSMUSG00000020719.15	ENSMUST00000133426.8	3593	12	0	-2	0	2	multi-exon	FALSE	canonical	3	3830	junction_7	165.368159266449	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	-7	True	AATAAA	-19	NA	106679320	106672371	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008228	chr11	+	224	1	Intergenic	novelGene_62	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGGATTCCATTGTAAAAA	8126	False	NA	NA	False	TTTAAA	-19	NA	106696797	106697021	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_106696800_106697000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008257	chr11	+	461	1	ISM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	18096	133	18003	-133	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCCAGGGTGGTGATTAA	NA	False	NA	14	True	AATAAA	-26	NA	107388405	107388866	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_107388400_107388900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008273	chr11	+	551	1	ISM	ENSMUSG00000020611.15	ENSMUST00000020930.14	6160	4	37988	0	37988	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGTAGCACGACGTTATT	NA	False	NA	12	True	AATAAA	-14	NA	109291644	109292195	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_109291600_109292200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008295	chr11	+	2068	12	FSM	ENSMUSG00000020623.12	ENSMUST00000020949.12	2068	12	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_7	8.31308835611224	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATAGTATTAGTG	NA	False	NA	14	True	AGTAAA	-24	NA	110289947	110404467	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381702_110383338_110383459_110383721_110383839_110385120_110385173_110387164_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008299	chr11	+	325	1	ISM	ENSMUSG00000020623.12	ENSMUST00000020949.12	2068	12	114195	0	34278	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATAGTATTAGTG	4975	False	NA	14	True	AGTAAA	-24	NA	110404142	110404467	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_+_110404100_110404500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008314	chr11	-	625	1	ISM	ENSMUSG00000041629.8	ENSMUST00000120194.2	2619	3	20624	1588	20624	-1588	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGTTTCCATGGGGAAAA	NA	False	NA	-16	True	AATAAA	-14	NA	113554357	113553732	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_113553700_113554400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008354	chr11	+	365	5	FSM	ENSMUSG00000057322.13	ENSMUST00000082092.5	345	5	-19	-1	-2	1	multi-exon	FALSE	canonical	3	1304	junction_1	7543.63564122102	432	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCCTCAGTCTCT	NA	False	NA	29	True	ATTAAA	-16	NA	114559432	114563158	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_114559512_114559606_114559641_114559731_114559793_114562559_114562683_114563090
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008375	chr11	-	648	3	FSM	ENSMUSG00000015542.18	ENSMUST00000134769.2	386	3	-77	-185	2	1	multi-exon	FALSE	canonical	2	2	junction_1	42.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGTTTAGGCCCTGC	NA	False	NA	NA	False	AATAAA	-16	NA	115078179	115075618	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_115075943_115077574_115077664_115077944
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008383	chr11	+	868	6	FSM	ENSMUSG00000018858.16	ENSMUST00000153983.8	2596	6	-12	1740	-12	15	multi-exon	FALSE	canonical	3	944	junction_3	61.9825781974258	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTTGCACAGGGCTCTT	NA	False	NA	31	True	AATAAA	-31	NA	115294565	115301760	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_115294787_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008385	chr11	+	765	6	FSM	ENSMUSG00000018858.16	ENSMUST00000103036.5	749	6	-16	0	-11	0	multi-exon	FALSE	canonical	3	165	junction_1	353.082766501	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTTCCAGTGAGAGCT	NA	False	NA	16	True	AATAAA	-16	NA	115294566	115301745	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_115294700_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008439	chr11	+	2159	19	FSM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	10	61	10	18	multi-exon	TRUE	canonical	3	862	junction_16	81.0315439264927	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGGAGGTTTTAAAATTG	NA	False	NA	30	True	AATAAA	-36	NA	115455269	115474750	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008444	chr11	+	2085	19	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_16	299.37137842857	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	12	True	AATAAA	-18	NA	115455301	115474732	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473910_115474039_115474151_115474254_115474546
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008472	chr11	-	1901	4	FSM	ENSMUSG00000020743.16	ENSMUST00000142637.2	621	4	-21	-1259	2	0	multi-exon	FALSE	canonical	3	324	junction_3	34.4222150491349	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503751	115498743	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_115500262_115500364_115500475_115502728_115502861_115503610
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008482	chr11	-	1579	1	ISM	ENSMUSG00000059923.14	ENSMUST00000106499.8	2333	4	53684	0	53684	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTCTTCATTTCTCC	NA	False	NA	-1	True	AATAAA	-19	NA	115536449	115534870	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_115534900_115536400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008483	chr11	-	2548	6	FSM	ENSMUSG00000059923.14	ENSMUST00000021090.14	2709	6	161	0	140	0	multi-exon	FALSE	canonical	3	859	junction_5	53.4714877294432	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTCTTCATTTCTCC	4631	False	NA	-1	True	AATAAA	-19	NA	115599262	115534870	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008490	chr11	+	1947	11	FSM	ENSMUSG00000020781.15	ENSMUST00000021134.10	1979	11	27	5	5	0	multi-exon	FALSE	canonical	3	156	junction_1	26.8730348118704	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTGGTTCAATACTTAC	5959	False	NA	NA	False	ATTAAA	-16	NA	115705576	115713915	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_115705646_115705740_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008516	chr11	-	2025	3	FSM	ENSMUSG00000016559.15	ENSMUST00000139378.2	773	3	-30	-1222	1	-326	multi-exon	FALSE	canonical	3	13934	junction_1	171	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGTCAAACCTAAATTGAAT	NA	False	NA	-11	True	AATAAA	-18	NA	115915329	115913112	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_115914362_115914450_115914605_115914707
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008522	chr11	+	204	1	Intergenic	novelGene_63	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAACCAAAGAAGTAGTAAT	4336	False	NA	NA	False	NA	NA	NA	115916661	115916865	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_115916700_115916900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008546	chr11	-	1426	9	FSM	ENSMUSG00000020775.14	ENSMUST00000106439.2	1411	9	-13	-2	-13	2	multi-exon	FALSE	canonical	3	763	junction_8	33.509093914936	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTTCACTTTCGGGCA	394	False	NA	0	True	AATAAA	-22	NA	116029707	116022640	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008555	chr11	+	917	4	FSM	ENSMUSG00000020778.13	ENSMUST00000021130.7	902	4	-13	-2	-13	2	multi-exon	FALSE	canonical	3	95	junction_3	16.0277537068951	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGCTGATGCGGAG	9054	False	NA	9	True	AATAAA	-16	NA	116089667	116106146	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_116089810_116095670_116095806_116096436_116096595_116105664
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008594	chr11	+	1988	5	FSM	ENSMUSG00000020812.19	ENSMUST00000106378.8	1988	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	18.9340962287615	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116562494	116566624	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008599	chr11	+	731	1	NIC	ENSMUSG00000020812.19	novel	865	6	NA	NA	2151	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116565893	116566624	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_+_116565900_116566600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008664	chr11	-	1251	7	FSM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	206	-17	-19	17	multi-exon	FALSE	canonical	3	796	junction_5	107.729084074615	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGGTTTCCCTAACTTG	NA	False	NA	0	True	ATTAAA	-33	NA	117716712	117706334	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716426_117716459_117716539
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008666	chr11	-	1090	5	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	0	17	combination_of_known_splicesites	FALSE	canonical	3	49	junction_2	509.684399898604	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGGTTTCCCTAACTTG	NA	False	NA	0	True	ATTAAA	-33	NA	117716673	117706334	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_117706966_117707272_117707393_117712922_117713017_117715496_117715608_117716539
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008687	chr11	-	2552	2	FSM	ENSMUSG00000053113.4	ENSMUST00000054002.4	2552	2	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTGAGCCTTTCTTTC	NA	False	NA	NA	False	AATAAA	-30	NA	117860012	117856904	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_117859145_117859700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008723	chr11	+	208	1	Intergenic	novelGene_64	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTACATTTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	119180897	119181105	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr11_+_119180900_119181100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008734	chr11	+	2071	14	FSM	ENSMUSG00000025372.17	ENSMUST00000026436.10	2394	14	323	0	-30	0	multi-exon	TRUE	canonical	3	19	junction_13	8.07215976759687	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGTGTGTGGTCTGTTGT	NA	False	NA	10	True	AATAAA	-16	NA	119833911	119897608	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119897184
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008736	chr11	+	2113	15	FSM	ENSMUSG00000025372.17	ENSMUST00000106233.2	2442	15	329	0	-24	0	multi-exon	FALSE	canonical	2	2	junction_13	13.1158495799579	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGTGTGTGGTCTGTTGT	NA	False	NA	10	True	AATAAA	-16	NA	119833917	119897608	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119893863_119893912_119897184
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008777	chr11	+	2794	6	FSM	ENSMUSG00000049957.15	ENSMUST00000058370.14	2778	6	-16	0	-16	0	multi-exon	FALSE	canonical	3	99	junction_3	16.7164589551735	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGAGAACATTCTTGTT	192	False	NA	NA	False	AATAAA	-20	NA	120348924	120355184	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_120349105_120349437_120349572_120350867_120351091_120352541_120352625_120352831_120352912_120353090
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008795	chr11	-	1205	5	FSM	ENSMUSG00000061111.9	ENSMUST00000034913.5	1205	5	5	-5	5	5	multi-exon	FALSE	canonical	3	334	junction_4	30.2861354418156	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGGCAGTCTGTCAGGT	NA	False	NA	-19	True	AATAAA	-22	NA	120440548	120433708	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_120434575_120434729_120434832_120435506_120435626_120435702_120435755_120440482
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008798	chr11	-	2547	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	315	-1	-97	1	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTGCTGCTTTATTTTG	3682	False	NA	-3	True	AATAAA	-22	NA	120463764	120451122	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008810	chr11	-	492	1	ISM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	3029	0	2785	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	-10	True	AATAAA	-22	NA	120469421	120468929	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr11_-_120468900_120469400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008881	chr11	+	1697	15	FSM	ENSMUSG00000025142.19	ENSMUST00000106158.9	1690	15	-4	-3	-4	0	multi-exon	FALSE	canonical	3	22	junction_10	252.602010107212	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120563877	120600273	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008886	chr11	+	2097	16	NIC	ENSMUSG00000025142.19	novel	870	8	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	243.577411833601	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120564171	120600273	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_+_120564628_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008901	chr11	-	571	4	NIC	ENSMUSG00000025144.18	novel	606	5	NA	NA	-16	1	combination_of_known_splicesites	FALSE	canonical	3	126	junction_3	359.512942125253	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCTTTCTCTTTGCCAT	NA	False	NA	-1	True	AATAAA	-20	NA	120604580	120601766	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr11_-_120602133_120602215_120602305_120602528_120602583_120604518
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008922	chr11	+	1595	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-2	0	multi-exon	FALSE	canonical	3	1960	junction_1	0	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTACAAGAGTCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	120653617	120655245	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr11_+_120653817_120653849
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008927	chr11	+	1630	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	-2	-2	-2	2	mono-exon	FALSE	NA	NA	NA	NA	NA	861	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACAAGAGTCCTGCCTCA	NA	False	NA	NA	False	NA	NA	NA	120653617	120655247	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_120653600_120655200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008938	chr11	+	1985	14	FSM	ENSMUSG00000025156.18	ENSMUST00000172809.2	2000	14	15	0	15	0	multi-exon	TRUE	canonical	3	238	junction_1	255.452956564905	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1649	False	NA	2	True	ATTAAA	-19	NA	120675355	120679928	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_120675552_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008952	chr11	-	539	2	NNC	ENSMUSG00000048445.7	novel	3403	19	NA	NA	20974	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTGTCTTGTCCTACT	4478	False	NA	2	True	ATTAAA	-28	NA	120743523	120717354	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_120717751_120743380
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008976	chr11	+	1862	2	FSM	ENSMUSG00000039329.9	ENSMUST00000155694.2	406	2	-4	-1452	-4	0	multi-exon	FALSE	canonical	3	732	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTATGTGTATGGTTT	NA	False	NA	26	True	AATAAA	-20	NA	121036978	121039145	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_+_121037049_121037353
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008989	chr11	-	2387	7	FSM	ENSMUSG00000039294.15	ENSMUST00000038709.14	2417	7	30	0	26	0	multi-exon	FALSE	canonical	0	0	junction_6	26.4790273403101	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120105	121113413	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119864
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000008995	chr11	-	2245	10	NNC	ENSMUSG00000025173.14	novel	2321	10	NA	NA	-10	-8	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_4	138.714023252567	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTAAAGAGCAGAGCCAT	NA	False	NA	-7	True	AATAAA	-25	NA	121245237	121218057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221025_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009007	chr12	+	863	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178074.8	4006	4	7	3136	7	1	multi-exon	FALSE	canonical	3	136	junction_1	34.8934887272046	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCTCAGGACAAATTTG	NA	False	NA	11	True	AATAAA	-20	NA	3285510	3288274	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009040	chr12	-	309	2	NNC	ENSMUSG00000112819.2	novel	457	3	NA	NA	-26	3	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	0	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGGCTACATTT	NA	False	NA	NA	False	NA	NA	NA	4603811	4602542	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr12_-_4602731_4603690
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009050	chr12	+	141	1	FSM	ENSMUSG00000091269.3	ENSMUST00000169666.3	1346	1	1331	-126	1331	126	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCTTGGATATCCTGTT	NA	False	NA	NA	False	NA	NA	NA	4833500	4833641	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_4833500_4833600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009064	chr12	+	208	1	ISM	ENSMUSG00000051721.7	ENSMUST00000223551.2	4317	4	15771	762	8928	-762	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTGAAAGTTTTACAAAAAT	1256	False	NA	NA	False	TTTAAA	-2	NA	4909073	4909281	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_+_4909100_4909300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009095	chr12	+	296	1	ISM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	16783	0	16783	0	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCTCATGTTTATGCTA	NA	False	NA	38	True	AATAAA	-29	NA	8988446	8988742	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_+_8988400_8988700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009135	chr12	+	1358	1	NIC	ENSMUSG00000057469.9	novel	2694	10	NA	NA	1244	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGCGTGCCTGTGTTTC	NA	False	NA	4	True	ATTAAA	-15	NA	16875395	16876753	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr12_+_16875400_16876800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009138	chr12	-	1876	7	FSM	ENSMUSG00000045679.15	ENSMUST00000054536.11	1928	7	52	0	1	0	multi-exon	FALSE	canonical	3	122	junction_2	25.4165300542777	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTAAGCTGTCATGAATT	NA	False	NA	1	True	AATAAA	-26	NA	17050067	17038648	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_17039897_17042278_17042321_17043453_17043575_17045614_17045673_17047634_17047705_17047774_17047858_17049813
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009178	chr12	+	1381	1	Intergenic	novelGene_65	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGTATTTGGTTGTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	18700321	18701702	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr12_+_18700300_18701700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009188	chr12	+	196	1	Intergenic	novelGene_66	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCACATTGACATTCACC	NA	False	NA	NA	False	NA	NA	NA	20323549	20323745	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr12_+_20323500_20323700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009208	chr12	+	681	4	FSM	ENSMUSG00000062054.8	ENSMUST00000223345.2	1890	4	6	1203	6	-621	multi-exon	FALSE	canonical	3	412	junction_2	19.3964487013015	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGCAATTTTGCTACTC	NA	False	NA	19	True	NA	NA	NA	21366420	21370156	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009209	chr12	+	866	6	NIC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	6	-212	combination_of_known_splicesites	FALSE	canonical	3	85	junction_2	143.346293987672	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	9	True	ATTAAA	-19	NA	21366420	21373608	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr12_+_21366514_21367376_21367430_21367930_21368048_21369770_21369933_21371334_21371457_21373289
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009252	chr12	-	532	1	FSM	ENSMUSG00000066553.6	ENSMUST00000140065.2	342	1	-55	-135	-55	135	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTGTGCAGATGGCCTG	NA	False	NA	NA	False	AATACA	-16	NA	24689064	24688532	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_24688500_24689100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009265	chr12	-	1063	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	-21	-88	-21	88	multi-exon	TRUE	canonical	3	10789	junction_4	2567.89392736971	5896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTCTTCATCATTCCTG	NA	False	NA	81	True	NA	NA	NA	28685973	28680764	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009269	chr12	-	651	7	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	5471.28825222076	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28685880	28681081	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr12_-_28681193_28681622_28681774_28683766_28683830_28684207_28684352_28685414_28685487_28685578_28685663_28685854
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009287	chr12	+	1707	4	FSM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	-55	0	-55	0	multi-exon	FALSE	canonical	3	316	junction_2	13.6950923894494	372	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTCTCTCGAGAGTTCT	NA	False	NA	15	True	NA	NA	NA	28725174	28732174	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_28725372_28727776_28727897_28729388_28729569_28730964
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009321	chr12	-	1800	8	FSM	ENSMUSG00000020650.16	ENSMUST00000177962.9	6155	8	-29	4384	-6	10	multi-exon	FALSE	canonical	3	313	junction_3	46.0678293167714	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTTTTTATTCTCTAG	NA	False	NA	NA	False	TATAAA	-20	NA	31684663	31645349	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261_31684380_31684603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009325	chr12	-	1782	7	FSM	ENSMUSG00000020648.4	ENSMUST00000020977.4	1773	7	-9	0	-9	0	multi-exon	FALSE	canonical	2	86	junction_6	14.7016627933336	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGTATGACTCGCCTGTA	9051	False	NA	-5	True	AATAAA	-17	NA	31704834	31690048	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_31690944_31691500_31691728_31692762_31692886_31696619_31696738_31698764_31698887_31702289_31702441_31704688
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009352	chr12	+	194	1	Intergenic	novelGene_67	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGATTTGGGAATAACT	NA	False	NA	NA	False	NA	NA	NA	36064190	36064384	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr12_+_36064200_36064400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009369	chr12	-	698	1	ISM	ENSMUSG00000047446.19	ENSMUST00000146905.2	3710	2	911	2530	849	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTAGTGTTTTGTGCTT	NA	False	NA	-6	True	AATAAA	-16	NA	40086517	40085819	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_-_40085800_40086500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009370	chr12	-	1127	2	FSM	ENSMUSG00000047446.19	ENSMUST00000146905.2	3710	2	53	2530	0	1	multi-exon	FALSE	canonical	3	67	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTAGTGTTTTGTGCTT	NA	False	NA	-6	True	AATAAA	-16	NA	40087375	40085819	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_40086833_40087261
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009378	chr12	-	1581	12	FSM	ENSMUSG00000055917.16	ENSMUST00000069637.15	2188	12	111	496	-17	-496	multi-exon	FALSE	canonical	3	359	junction_6	45.6703965821071	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTCATTATCTTGGATG	NA	False	NA	NA	False	AATAAA	-32	NA	40495790	40365540	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40370698_40372528_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40495664
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009401	chr12	+	124	1	FSM	ENSMUSG00000112908.2	ENSMUST00000217815.2	345	1	314	-93	314	93	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAAATGTGGTACATCTA	NA	False	NA	NA	False	AATAAA	-43	NA	47860001	47860125	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_47860000_47860100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009417	chr12	-	1177	3	FSM	ENSMUSG00000020956.15	ENSMUST00000021339.8	2564	3	-6	1393	-6	-1393	multi-exon	FALSE	canonical	3	170	junction_1	5	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTTTTTCTTAAAGCC	NA	False	NA	3	True	AATAAA	-20	NA	52053290	52045682	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_52046657_52051661_52051732_52053157
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009446	chr12	-	573	1	Genic_Genomic	ENSMUSG00000005656.10	novel	NA	NA	NA	NA	13572	10	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTTTCTTTATCTTTTT	2024	False	NA	0	True	AATAAA	-30	NA	54793696	54793123	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr12_-_54793100_54793700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009513	chr12	-	264	1	ISM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	2974	0	2137	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGTCCCGCTCGTTTGC	NA	False	NA	-2	True	ATTAAA	-17	NA	55536458	55536194	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_-_55536200_55536500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009564	chr12	+	2840	14	FSM	ENSMUSG00000035597.20	ENSMUST00000120580.8	4069	14	3	1226	2	4	multi-exon	FALSE	canonical	3	174	junction_3	84.525476709793	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGATGAATTCATTTGG	7510	False	NA	24	True	AATAAA	-21	NA	65083109	65108934	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_65083243_65089234_65089582_65090005_65090132_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009570	chr12	-	997	7	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_4	3801.15651991455	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTGTGTTCTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	65120752	65109197	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115771_65115884_65116724_65116827_65120588
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009595	chr12	-	1083	1	FSM	ENSMUSG00000060499.8	ENSMUST00000081908.8	1023	1	-55	-5	-55	5	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGGTTGTTTTGCTTTA	NA	False	NA	1	True	ATTAAA	-25	NA	66331230	66330147	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_66330100_66331200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009600	chr12	+	671	1	FSM	ENSMUSG00000113948.2	ENSMUST00000221295.2	556	1	-37	-78	-37	78	mono-exon	FALSE	NA	NA	NA	NA	NA	2904	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATTTCAATAATGCATTT	NA	False	NA	NA	False	NA	NA	NA	67557492	67558163	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_67557500_67558200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009603	chr12	+	2819	1	Intergenic	novelGene_68	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAAATTGTATCCCCGT	NA	False	NA	NA	False	NA	NA	NA	68605071	68607890	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr12_+_68605100_68607900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009607	chr12	-	537	2	ISM	ENSMUSG00000034892.9	ENSMUST00000037023.9	390	3	89	0	-43	0	intron_retention	FALSE	canonical	3	25878	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGTGTGTTTTGT	NA	False	NA	-10	True	AATAAA	-18	NA	69205871	69204495	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_-_69204596_69205434
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009616	chr12	-	1368	1	NIC	ENSMUSG00000034892.9	novel	390	3	NA	NA	-35	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGTGTGTTTTGT	NA	False	NA	-10	True	AATAAA	-18	NA	69205863	69204495	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr12_-_69204500_69205900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009619	chr12	+	1525	4	FSM	ENSMUSG00000034883.10	ENSMUST00000110621.3	1500	4	-23	-2	-23	2	multi-exon	FALSE	canonical	3	105	junction_3	15.6276108929747	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGTCTCAGCAGTTAAG	NA	False	NA	11	True	ATTAAA	-25	NA	69215564	69225785	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_69215837_69218635_69218735_69221165_69221888_69225353
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009628	chr12	-	559	2	NNC	ENSMUSG00000049751.7	novel	757	2	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGTTTTGATTCTCA	NA	False	NA	-1	True	AATAAA	-21	NA	69230765	69229507	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr12_-_69229940_69230638
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009679	chr12	+	284	1	ISM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	14246	416	7500	-416	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATGTTGAAGAGAAGTTT	NA	False	NA	12	True	AATAAA	-18	NA	70514114	70514398	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_+_70514100_70514400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009710	chr12	+	177	1	Intergenic	novelGene_69	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAATTTAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	71122920	71123097	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr12_+_71122900_71123100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009714	chr12	-	797	4	FSM	ENSMUSG00000021079.17	ENSMUST00000021486.10	794	4	-2	-1	0	1	multi-exon	FALSE	canonical	3	89	junction_3	97.112763779479	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTGTCTTTACTGTATA	NA	False	NA	-17	True	AATAAA	-14	NA	71183449	71169945	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71183328
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009718	chr12	-	979	6	NNC	ENSMUSG00000021079.17	novel	990	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	124.393890525218	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTGTCTTTACTGTATA	NA	False	NA	-17	True	AATAAA	-14	NA	71183447	71169945	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71180673_71180772_71183328
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009723	chr12	+	2092	1	ISM	ENSMUSG00000034574.11	ENSMUST00000223272.2	5835	26	159164	0	100512	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTTTTCTATGCATTA	NA	False	NA	22	True	AATAAA	-22	NA	72037015	72039107	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_+_72037000_72039100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009727	chr12	-	908	1	NIC	ENSMUSG00000019718.9	novel	1831	5	NA	NA	22	-7246	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGCTTCAGTGTCTTTGCC	NA	False	NA	0	True	AATAAA	-25	NA	72132191	72131283	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr12_-_72131300_72132200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009734	chr12	-	1522	7	FSM	ENSMUSG00000021087.19	ENSMUST00000021497.16	1544	7	23	-1	-15	0	multi-exon	FALSE	canonical	3	47	junction_2	4.27200187265877	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTCTCTCTGTCTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	72283475	72258525	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_72259352_72263544_72263604_72263688_72263736_72264192_72264263_72266030_72266170_72270105_72270314_72283302
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009743	chr12	+	203	1	Intergenic	novelGene_70	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGAGCCTCTTTCCAA	3581	False	NA	NA	False	NA	NA	NA	72739458	72739661	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr12_+_72739500_72739700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009758	chr12	-	1723	5	FSM	ENSMUSG00000034442.12	ENSMUST00000116420.4	2066	5	-38	381	-37	89	multi-exon	FALSE	canonical	3	66	junction_2	19.266226926931	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTATAGACTGATTTTT	NA	False	NA	-6	True	AGTAAA	-22	NA	73333521	73327165	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73333457
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009784	chr12	+	194	1	Intergenic	novelGene_71	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTAGAGTAAGAGGGGA	1355	False	NA	NA	False	NA	NA	NA	76499332	76499526	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr12_+_76499300_76499500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009787	chr12	+	745	1	ISM	ENSMUSG00000052609.10	ENSMUST00000075249.6	5138	19	44918	0	6748	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTGTGGCCTCCTTCC	NA	False	NA	22	True	NA	NA	NA	76625071	76625816	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_+_76625100_76625800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009798	chr12	-	1021	2	FSM	ENSMUSG00000042808.11	ENSMUST00000082431.6	1010	2	-7	-4	-7	0	multi-exon	FALSE	canonical	3	177	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTCTCTGTCTTCCTTT	NA	False	NA	-1	True	AATAAA	-20	NA	76842280	76839106	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_76839775_76841927
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009801	chr12	+	2615	12	FSM	ENSMUSG00000033373.17	ENSMUST00000041008.10	2613	12	0	-2	0	2	multi-exon	FALSE	canonical	3	246	junction_4	27.7548298231568	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTTTTTTTTTTCCA	NA	False	NA	16	True	AATAAA	-17	NA	76884187	76968188	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_76884426_76909259_76909325_76920149_76920223_76921805_76921898_76934505_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009820	chr12	+	778	1	ISM	ENSMUSG00000021065.17	ENSMUST00000062804.8	3358	12	236147	349	65071	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGAAGTTTCTGGAAT	NA	False	NA	13	True	AATAAA	-14	NA	77521985	77522763	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_+_77522000_77522800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009844	chr12	-	2338	4	FSM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	1	0	1	0	multi-exon	FALSE	canonical	3	102	junction_1	16.0485374896143	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGACTTGTTTTTTTAT	NA	False	NA	-1	True	AATAAA	-30	NA	79136424	79127437	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_79129271_79130389_79130474_79132420_79132631_79136213
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009864	chr12	+	844	7	ISM	ENSMUSG00000059060.16	ENSMUST00000079533.12	1759	8	-31	181250	-31	-181250	5prime_fragment	FALSE	canonical	3	33	junction_1	14.6021307425397	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGTCCCTTTTCCTTCTT	8682	False	NA	NA	False	NA	NA	NA	79344093	79374180	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_+_79344158_79347315_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009871	chr12	+	219	1	Intergenic	novelGene_72	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCCTATGCTTGATTC	3235	False	NA	NA	False	NA	NA	NA	79765615	79765834	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr12_+_79765600_79765800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009884	chr12	-	836	4	FSM	ENSMUSG00000021131.15	ENSMUST00000021559.14	1293	4	458	-1	-35	1	multi-exon	FALSE	canonical	3	8000	junction_3	570.898122843881	1958	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTTTCTTATTTATTTG	NA	False	NA	0	True	AATAAA	-32	NA	80690657	80680794	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80690537
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009907	chr12	+	1655	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110356.3	1568	8	-82	-5	-1	1	multi-exon	FALSE	canonical	3	562	junction_1	476.276244656911	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCTGTTTCTCTCAAG	NA	False	NA	NA	False	AATAAA	-24	NA	80992276	80997282	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009929	chr12	+	1961	9	NNC	ENSMUSG00000021134.18	novel	1568	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	18	junction_6	845.261608911703	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTGTTTCTCTCAA	NA	False	NA	NA	False	AATAAA	-23	NA	80992307	80997281	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902_80995241_80995868_80995943_80996267_80996379_80996493
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009946	chr12	+	1563	1	ISM	ENSMUSG00000021136.14	ENSMUST00000110347.9	3496	13	158044	0	158024	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81231625	81233188	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_+_81231600_81233200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009951	chr12	-	851	6	FSM	ENSMUSG00000021139.18	ENSMUST00000164386.8	1043	6	28	164	0	-164	multi-exon	FALSE	canonical	3	129	junction_3	83.1899032335054	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTCTCAGTGTTCCAT	NA	False	NA	-44	True	AATAAA	-21	NA	81579651	81405797	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000009964	chr12	-	801	6	FSM	ENSMUSG00000021139.18	ENSMUST00000166664.2	2284	6	-4	1487	-4	-1487	multi-exon	FALSE	canonical	3	129	junction_3	88.6715286887511	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTTTCAGTCTACT	NA	False	NA	-3	True	ATTAAA	-17	NA	81579660	81518863	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010029	chr12	+	205	1	Intergenic	novelGene_73	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATTTTACATTATCAATA	NA	False	NA	NA	False	NA	NA	NA	84468013	84468218	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr12_+_84468000_84468200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010031	chr12	-	3407	12	FSM	ENSMUSG00000021238.12	ENSMUST00000085192.7	3399	12	-8	0	-7	0	multi-exon	FALSE	canonical	2	131	junction_11	16.2917613413438	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTCTTTTCCTTCTTTTG	NA	False	NA	NA	False	AATAAA	-33	NA	84497785	84477490	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486490_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84497662
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010051	chr12	-	1402	4	FSM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	61	1836	61	94	multi-exon	FALSE	canonical	3	2850	junction_3	124.194292228839	1251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTGTTCAGTCTGTGG	NA	False	NA	-1	True	CATAAA	-20	NA	84819865	84803171	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_84803987_84807493_84807667_84812050_84812159_84819559
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010062	chr12	+	848	4	FSM	ENSMUSG00000021241.8	ENSMUST00000222982.2	727	4	-37	-84	-9	0	multi-exon	FALSE	canonical	0	0	junction_3	90.0900783783776	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820041	84821862	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_84820146_84820369_84820452_84820566_84820683_84821316
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010077	chr12	+	1811	1	FSM	ENSMUSG00000021241.8	ENSMUST00000222136.2	416	1	0	-1395	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820051	84821862	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_84820100_84821900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010090	chr12	+	387	1	NIC	ENSMUSG00000004789.11	novel	2259	16	NA	NA	3264	1	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGGATCTGTGCTCCTT	NA	False	NA	23	True	ATTAAA	-23	NA	85180478	85180865	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr12_+_85180500_85180900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010100	chr12	+	1469	8	FSM	ENSMUSG00000004788.12	ENSMUST00000004910.12	1605	8	6	130	6	5	multi-exon	FALSE	canonical	3	336	junction_7	13.1661284657074	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCGTTTATTGTTCTGAGC	NA	False	NA	36	True	AATAAA	-21	NA	85266260	85273272	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010114	chr12	-	1093	1	ISM	ENSMUSG00000021248.10	ENSMUST00000222529.2	3181	3	9214	0	9214	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGGTGTATTTGTCTGT	8998	False	NA	-1	True	AATAAA	-16	NA	85388480	85387387	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_-_85387400_85388500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010153	chr12	+	1674	9	FSM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	-18	0	-18	0	multi-exon	FALSE	canonical	3	449	junction_5	40.5555175037873	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	NA	False	NA	13	True	NA	NA	NA	87194473	87211497	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010231	chr12	+	230	1	Intergenic	novelGene_74	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAGGACCAACACCTAAAG	NA	False	NA	NA	False	NA	NA	NA	99400919	99401149	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr12_+_99400900_99401100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010237	chr12	+	2067	16	FSM	ENSMUSG00000021177.17	ENSMUST00000153627.8	2036	16	-27	-4	-7	4	multi-exon	FALSE	canonical	3	362	junction_1	45.8998910674089	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGGCCTGGAATGAAATT	NA	False	NA	23	True	ATTAAA	-23	NA	99850768	99921482	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010248	chr12	+	274	1	ISM	ENSMUSG00000021178.10	ENSMUST00000021595.10	1591	11	12941	37	3161	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTAATGAGTACCATGATA	NA	False	NA	21	True	AATAAA	-27	NA	100089353	100089627	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_+_100089400_100089600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010288	chr12	-	1271	1	ISM	ENSMUSG00000057963.10	ENSMUST00000046518.12	2918	10	135078	0	24225	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTACGTGGTCACAGTC	NA	False	NA	-1	True	AATAAA	-20	NA	102536111	102534840	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_-_102534800_102536100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010296	chr12	-	1941	2	FSM	ENSMUSG00000041716.8	ENSMUST00000174651.2	2795	2	869	-15	869	15	multi-exon	FALSE	canonical	3	96	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATTGTAATACTACATTT	6359	False	NA	-8	True	AATAAA	-31	NA	102724062	102707975	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_102709654_102723799
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010312	chr12	+	198	1	Intergenic	novelGene_75	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAGGAATCAATTCTTCT	NA	False	NA	NA	False	NA	NA	NA	102782731	102782929	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr12_+_102782700_102782900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010316	chr12	-	722	2	ISM	ENSMUSG00000021200.15	ENSMUST00000127447.2	2399	6	11633	-4	11633	0	3prime_fragment	FALSE	canonical	3	41	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCCCTGTGATTCCTG	NA	False	NA	-2	True	AATAAA	-15	NA	103290210	103287400	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_-_103287934_103290021
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010332	chr12	+	397	2	Intergenic	novelGene_76	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACCTTGTCTTGGCTCCA	659	False	NA	7	True	NA	NA	NA	104343727	104349127	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr12_+_104343932_104348934
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010344	chr12	-	1328	3	FSM	ENSMUSG00000041359.15	ENSMUST00000101071.4	1299	3	-24	-5	-3	-3	multi-exon	FALSE	canonical	0	0	junction_1	973.5	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCGTGCTCTTGGAATT	NA	False	NA	-5	True	AATAAA	-20	NA	105188999	105183011	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_105183961_105184917_105185089_105188791
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010402	chr12	+	1794	14	NNC	ENSMUSG00000021115.16	novel	2520	14	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	286.853445871379	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976592	106041459	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr12_+_105976969_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010420	chr12	-	2813	10	FSM	ENSMUSG00000021266.17	ENSMUST00000109848.10	2831	10	18	0	18	0	multi-exon	FALSE	canonical	3	1835	junction_9	109.614475929657	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108860082	108825955	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010433	chr12	+	1816	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	3	combination_of_known_junctions	FALSE	canonical	3	241	junction_3	82.0182906430023	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGGGTGTGCTACTAAT	NA	False	NA	NA	False	ACTAAA	-4	NA	109506881	109538163	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010436	chr12	+	1732	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	128.442792792777	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506881	109538160	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010443	chr12	+	176	1	Genic_Genomic	ENSMUSG00000021268.18	novel	NA	NA	NA	NA	22298	3	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGGGTGTGCTACTAAT	NA	False	NA	NA	False	ACTAAA	-4	NA	109537987	109538163	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr12_+_109538000_109538200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010449	chr12	+	98	1	FSM	ENSMUSG00000113198.2	ENSMUST00000222676.2	375	1	340	-63	340	63	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGTTAGGGAAACAGAACC	3534	False	NA	27	True	NA	NA	NA	110282763	110282861	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_110282800_110282900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010461	chr12	-	3527	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	-49	-197	-49	197	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	8869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTCTGGTCATGGTATT	NA	False	NA	0	True	NA	NA	NA	110662878	110656841	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010463	chr12	-	421	1	ISM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	4947	423	1732	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAATGTGTCTTTTCT	NA	False	NA	-5	True	GATAAA	-21	NA	110657882	110657461	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_-_110657500_110657900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010466	chr12	-	2980	10	NIC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	0	intron_retention	FALSE	canonical	3	11114	junction_6	1565.42138057631	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAATGTGTCTTTTCT	NA	False	NA	-5	True	GATAAA	-21	NA	110662743	110657461	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010478	chr12	+	1608	1	ISM	ENSMUSG00000037957.15	ENSMUST00000095410.8	2384	3	55429	0	-683	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTTGTAGAACTCTGAT	NA	False	NA	19	True	AATAAA	-18	NA	110759854	110761462	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_+_110759900_110761500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010510	chr12	-	1878	4	NNC	ENSMUSG00000021276.11	novel	1356	3	NA	NA	0	3	intron_retention	FALSE	canonical	3	5	junction_1	206.236649399556	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTAGTTATTTCTGTCTT	3361	False	NA	0	True	AATAAA	-21	NA	110855567	110844025	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr12_-_110844549_110845130_110846249_110850323_110850493_110855499
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010520	chr12	-	1458	3	FSM	ENSMUSG00000037904.15	ENSMUST00000128353.8	2577	3	45	1074	0	0	multi-exon	FALSE	canonical	3	78	junction_1	17	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGGATCTGCCTGGTCT	NA	False	NA	-7	True	NA	NA	NA	110945429	110942860	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_110943983_110944381_110944562_110945273
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010536	chr12	+	1957	9	ISM	ENSMUSG00000007411.17	ENSMUST00000221459.2	2807	18	52780	-63	3322	2	3prime_fragment	FALSE	canonical	3	315	junction_7	92.5141036545239	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCACTGTCTCCTACTG	1604	False	NA	NA	False	ATTAAA	-23	NA	111594264	111622657	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr12_+_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010546	chr12	-	1681	6	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	0	intron_retention	FALSE	canonical	3	7551	junction_4	349.982056682911	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638734	111635794	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111638014_111638199_111638408_111638663
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010547	chr12	-	1511	7	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	0	intron_retention	FALSE	canonical	3	7551	junction_5	335.592345297419	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638734	111635794	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111638014_111638199_111638408_111638663
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010554	chr12	-	1604	7	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	0	intron_retention	FALSE	canonical	3	7551	junction_5	321.637477086652	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638734	111635794	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637782_111637858_111638014_111638199_111638408_111638663
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010566	chr12	+	1995	4	NIC	ENSMUSG00000060950.13	novel	2131	4	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	70.7153920067383	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	5	True	AATAAA	-17	NA	111644535	111650336	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr12_+_111644596_111645036_111645397_111647235_111647503_111649028
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010575	chr12	-	2094	2	FSM	ENSMUSG00000049792.7	ENSMUST00000054636.7	2139	2	45	0	45	0	multi-exon	FALSE	canonical	3	159	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCCCCCTGTGCTGTTC	NA	False	NA	NA	False	CATAAA	-20	NA	111679646	111675921	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_-_111677847_111679477
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010596	chr12	+	1283	7	NNC	ENSMUSG00000021286.9	novel	1308	7	NA	NA	-14	2	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_5	264.970700686363	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGGCTCTGGCCTCACT	NA	False	NA	18	True	ATTAAA	-19	NA	111780627	111794822	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111793979_111794120_111794251
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010618	chr12	+	744	4	FSM	ENSMUSG00000064326.14	ENSMUST00000021728.12	924	4	186	-6	-102	2	multi-exon	FALSE	canonical	3	1700	junction_3	44.6542271235322	313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCCTTCCATCTGTT	7041	False	NA	23	True	AATAAA	-23	NA	112611298	112615585	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_112611519_112613271_112613467_112614258_112614416_112615413
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010635	chr12	-	1885	1	NIC	ENSMUSG00000047832.10	novel	2425	2	NA	NA	7261	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGGAGCCTTTTTTT	9987	False	NA	0	True	ATTAAA	-19	NA	112785733	112783848	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr12_-_112783800_112785700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010649	chr12	+	1197	7	FSM	ENSMUSG00000006356.11	ENSMUST00000084882.9	1439	7	245	-3	-91	3	multi-exon	FALSE	canonical	3	743	junction_5	14.1745076340121	334	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGTCGTGTGTGTGTGT	5867	False	NA	33	True	AATAAA	-26	NA	113104100	113109129	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr12_+_113104235_113107078_113107232_113107634_113107776_113107848_113107918_113108018_113108114_113108429_113108488_113108582
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010673	chr13	+	272	1	ISM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	27487	2050	3608	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	4212	False	NA	36	True	AATAAA	-19	NA	3615549	3615821	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr13_+_3615500_3615800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010699	chr13	-	2534	21	NIC	ENSMUSG00000021196.15	novel	2679	22	NA	NA	0	8	combination_of_known_splicesites	FALSE	canonical	3	40	junction_6	289.380247252642	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTACTTGGTTTATTGT	NA	False	NA	-6	True	ATTAAA	-18	NA	6698761	6631209	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010722	chr13	-	1075	7	ISM	ENSMUSG00000052374.17	ENSMUST00000168193.8	2920	22	61765	-9	3593	0	3prime_fragment	FALSE	canonical	3	42	junction_5	11.7473401244707	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGACAAACTTTATTAAG	NA	False	NA	3	True	AATAAA	-29	NA	12293840	12284311	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr13_-_12284539_12285663_12285823_12287584_12287651_12289963_12290111_12291248_12291429_12292284_12292420_12293679
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010728	chr13	-	1192	1	ISM	ENSMUSG00000021306.12	ENSMUST00000021738.10	2971	7	34803	0	8994	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTCAACTGGTGCTGGA	5134	False	NA	NA	False	AATAAA	-19	NA	13533396	13532204	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr13_-_13532200_13533400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010760	chr13	-	812	3	FSM	ENSMUSG00000015672.5	ENSMUST00000221699.2	1174	3	-24	386	-22	74	multi-exon	FALSE	canonical	3	41	junction_2	520.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGGATTAATTTGTGTA	NA	False	NA	-9	True	AATAAA	-23	NA	14787634	14784883	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_14785326_14786007_14786190_14787446
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010781	chr13	-	1883	3	FSM	ENSMUSG00000075054.6	ENSMUST00000099735.6	8744	3	-9	6870	-9	635	multi-exon	FALSE	canonical	3	467	junction_2	27.5	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGCTCTACATTGTATT	NA	False	NA	NA	False	ATTAAA	-16	NA	18167943	18162784	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_18164368_18166212_18166335_18167765
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010784	chr13	+	202	1	Intergenic	novelGene_77	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAACCAGCCTAAGGATGG	NA	False	NA	NA	False	NA	NA	NA	18738337	18738539	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_18738300_18738500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010798	chr13	-	1313	9	FSM	ENSMUSG00000003062.14	ENSMUST00000039694.13	1327	9	15	-1	2	1	multi-exon	FALSE	canonical	3	699	junction_8	60.3857392105123	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGTGTTGTCTGTATT	NA	False	NA	1	True	AATAAA	-20	NA	19579950	19541844	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010804	chr13	-	1277	9	NNC	ENSMUSG00000003062.14	novel	1128	8	NA	NA	-2	3	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	340.955069437309	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATGCCCCTGCTTTGCC	NA	False	NA	0	True	AATAAA	-21	NA	19579927	19549122	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_-_19549516_19549601_19549725_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010815	chr13	+	188	1	Intergenic	novelGene_78	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTTATTTGGGGTAGTG	NA	False	NA	NA	False	NA	NA	NA	20217546	20217734	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_20217500_20217700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010842	chr13	-	491	1	FSM	ENSMUSG00000079941.2	ENSMUST00000044043.3	390	1	-32	-69	-32	69	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCCTCCCATAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-20	NA	21685620	21685129	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_21685100_21685600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010854	chr13	+	459	1	NIC	ENSMUSG00000069303.8	novel	1256	2	NA	NA	0	-2464	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTTCAGCGTAAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	22017912	22018371	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr13_+_22017900_22018400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010863	chr13	+	483	1	FSM	ENSMUSG00000062727.5	ENSMUST00000110455.4	476	1	-31	24	-31	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCAGTATTAGAGCTGCA	NA	False	NA	15	True	ACTAAA	-1	NA	22220008	22220491	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_22220000_22220500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010868	chr13	+	461	1	FSM	ENSMUSG00000069300.4	ENSMUST00000110452.2	463	1	-16	18	-16	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTTTTAAAGAGAGCTGC	NA	False	NA	NA	False	NA	NA	NA	22227367	22227828	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_22227400_22227800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010884	chr13	+	191	1	Intergenic	novelGene_79	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGGGCTTGAATGTACAC	NA	False	NA	NA	False	NA	NA	NA	23724220	23724411	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_23724200_23724400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010889	chr13	+	405	1	FSM	ENSMUSG00000061482.8	ENSMUST00000102968.3	1138	1	-33	766	-33	-766	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCTCACTTAAAGGAGCT	1880	False	NA	5	True	NA	NA	NA	23765547	23765952	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_23765500_23766000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010895	chr13	+	735	2	FSM	ENSMUSG00000018102.6	ENSMUST00000018246.6	1156	2	1	420	1	-420	multi-exon	FALSE	canonical	3	53	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGTCATGTTATATCACGT	184	False	NA	NA	False	NA	NA	NA	23868182	23876471	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_23868605_23876158
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010900	chr13	-	481	1	FSM	ENSMUSG00000069310.5	ENSMUST00000091752.5	630	1	81	68	81	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTCATGTAAAGTTGCTG	4713	False	NA	-1	True	AAAAAG	-22	NA	23929504	23929023	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_23929000_23929500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010910	chr13	-	990	7	FSM	ENSMUSG00000006715.12	ENSMUST00000175689.8	723	7	-21	-246	-21	0	multi-exon	FALSE	canonical	3	19	junction_6	596.377513735125	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGTGGAGAATTAAGTGT	NA	False	NA	-8	True	AATAAA	-26	NA	24945480	24935827	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945342
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010978	chr13	-	1553	8	NIC	ENSMUSG00000060147.16	novel	1654	8	NA	NA	-3	-3	combination_of_known_junctions	FALSE	canonical	3	17	junction_7	174.090991924877	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGTCTGTCTGCCTCAC	8474	False	NA	-1	True	AATAAA	-25	NA	34119964	34101903	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119551_34119778_34119904
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010986	chr13	-	1486	8	FSM	ENSMUSG00000060147.16	ENSMUST00000017188.14	1504	8	18	0	0	0	multi-exon	FALSE	canonical	3	17	junction_7	171.60728779539	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8477	False	NA	-7	True	AATAAA	-19	NA	34119961	34101909	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119609_34119778_34119904
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000010997	chr13	+	1043	7	FSM	ENSMUSG00000046949.17	ENSMUST00000058978.9	3842	7	3	2796	3	1	multi-exon	FALSE	canonical	3	158	junction_1	21.7995922489899	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTTGCACTGTATTAGT	NA	False	NA	14	True	AATACA	-26	NA	34148672	34169630	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_34148784_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011002	chr13	+	1224	7	FSM	ENSMUSG00000038286.12	ENSMUST00000040656.8	1253	7	29	0	-6	0	multi-exon	FALSE	canonical	3	157	junction_3	28.0356915377524	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221608	34258057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34247892_34248017_34257658
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011007	chr13	-	1610	4	FSM	ENSMUSG00000058672.8	ENSMUST00000056427.10	1610	4	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_2	19.2006944318862	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCCTTTTCTCTTCAACA	NA	False	NA	NA	False	AATAAA	-22	NA	34261990	34258256	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_34259512_34260160_34260272_34260531_34260641_34261855
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011078	chr13	-	1504	2	ISM	ENSMUSG00000038991.18	ENSMUST00000160046.2	2781	3	2451	-11	2451	7	3prime_fragment	FALSE	canonical	3	1041	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGTCTTTGCTTAAATG	NA	False	NA	NA	False	AATAAA	-24	NA	38687467	38684241	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr13_-_38685685_38687406
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011091	chr13	-	459	1	ISM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	12911	1482	12808	-1482	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTTGTTATCTTTCC	NA	False	NA	-1	True	AGTAAA	-19	NA	38830123	38829664	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr13_-_38829700_38830100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011096	chr13	-	567	2	FSM	ENSMUSG00000001707.9	ENSMUST00000224487.2	533	2	-23	-11	-23	11	multi-exon	FALSE	canonical	3	1400	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGAGCATGGTTTGTGTGT	NA	False	NA	NA	False	AATAAA	-31	NA	38843009	38839776	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_38840217_38842882
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011106	chr13	+	1783	10	FSM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	-42	-19	-42	19	multi-exon	FALSE	canonical	3	605	junction_5	43.1108247413169	422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCGGTGCTTGGGATGA	NA	False	NA	NA	False	AATACA	-18	NA	41154456	41166510	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011156	chr13	+	204	1	Intergenic	novelGene_80	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCCATCAGATCACTGT	7763	False	NA	NA	False	NA	NA	NA	44774384	44774588	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_44774400_44774600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011175	chr13	-	1011	9	NIC	ENSMUSG00000021376.12	novel	2708	9	NA	NA	-26	2	combination_of_known_junctions	FALSE	canonical	3	43	junction_8	30.2438010177292	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTAGCCATGGTTTCTG	NA	False	NA	0	True	ATTAAA	-19	NA	47196646	47178652	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196602
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011186	chr13	-	2548	10	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	343	0	-17	0	3prime_fragment	FALSE	canonical	3	1428	junction_1	93.7092956902645	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	-15	True	AATAAA	-20	NA	47259323	47238257	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011187	chr13	-	2552	11	FSM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	4	0	-3	0	multi-exon	FALSE	canonical	3	1333	junction_10	113.482333426838	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	-15	True	AATAAA	-20	NA	47259662	47238257	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011203	chr13	-	1139	5	FSM	ENSMUSG00000021384.15	ENSMUST00000058196.13	1418	5	140	139	0	0	multi-exon	FALSE	canonical	2	5	junction_4	5.02493781056044	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTAGCCACCTTATCATC	NA	False	NA	4	True	AATAAA	-16	NA	49401630	49384304	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_49384808_49390899_49391089_49392264_49392413_49393958_49394148_49401520
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011225	chr13	+	2878	1	Genic_Genomic	ENSMUSG00000021395.12	novel	NA	NA	NA	NA	15352	2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGCTGTGAACTTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	51303706	51306584	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr13_+_51303700_51306600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011238	chr13	+	1078	4	FSM	ENSMUSG00000021453.3	ENSMUST00000021903.3	1071	4	0	-7	0	7	multi-exon	FALSE	canonical	3	52	junction_3	4.02768199119819	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATGCCTTTTTATTGAG	NA	False	NA	NA	False	AATAAA	-15	NA	52000713	52002511	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_52000869_52001387_52001490_52001591_52001806_52001904
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011259	chr13	+	1207	11	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	9	-1560	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	264.208800004845	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTCTGGTAGATTTTAA	NA	False	NA	NA	False	NA	NA	NA	54225896	54260801	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_+_54225945_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011315	chr13	+	256	1	ISM	ENSMUSG00000025875.15	ENSMUST00000026993.14	1585	8	7143	1	1136	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGTTTATGTTCACCG	NA	False	NA	17	True	AATAAA	-18	NA	54944332	54944588	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr13_+_54944300_54944600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011327	chr13	+	915	6	NIC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	91.9469412215545	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGTCTTTTTTTTCCC	NA	False	NA	NA	False	AATACA	-17	NA	55357594	55388662	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011349	chr13	+	417	1	ISM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	4356	0	2837	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGAGTCAGATAGCTT	374	False	NA	18	True	NA	NA	NA	55472668	55473085	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr13_+_55472700_55473100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011369	chr13	-	1006	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069968.13	1006	8	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	27.1751687376246	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCCTCTGTCTCCCA	NA	False	NA	-2	True	AATAAA	-17	NA	55661251	55654585	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011376	chr13	+	1459	5	FSM	ENSMUSG00000058569.9	ENSMUST00000109905.5	1420	5	-38	-1	-27	1	multi-exon	FALSE	canonical	3	616	junction_1	31.3847096529504	455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGTGGTTACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	55740943	55745511	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_55741171_55741313_55741415_55742517_55742644_55743280_55743428_55744653
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011383	chr13	+	1388	4	FSM	ENSMUSG00000021501.5	ENSMUST00000021963.5	1382	4	0	-6	0	6	multi-exon	FALSE	canonical	3	82	junction_2	4.49691252107735	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCTGTACATTTTATTT	NA	False	NA	NA	False	AATAAA	-27	NA	55770817	55780230	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_55771070_55772523_55772985_55776389_55776456_55779621
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011392	chr13	+	1554	5	FSM	ENSMUSG00000021497.11	ENSMUST00000021959.11	1527	5	-21	-6	-21	6	multi-exon	FALSE	canonical	3	237	junction_2	13.4257215820976	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTCGCTTGTTTCTGG	NA	False	NA	24	True	AATAAA	-20	NA	55862441	55874046	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_55862658_55865604_55866081_55869391_55869556_55872320_55872452_55873479
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011415	chr13	-	1253	1	FSM	ENSMUSG00000007836.7	ENSMUST00000007980.7	2678	1	1425	0	1425	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGATTGAGTGAGAGTATG	756	False	NA	-5	True	AATAAA	-15	NA	58274945	58273692	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_58273700_58274900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011441	chr13	-	2748	16	NIC	ENSMUSG00000021546.19	novel	2970	18	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	1429	junction_15	1716.40976718524	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	5119	False	NA	-8	True	AATACA	-15	NA	58549962	58538955	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011511	chr13	+	835	1	FSM	ENSMUSG00000114277.2	ENSMUST00000225897.2	220	1	27	-642	27	642	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGTAAAAAGGTAGATAGT	NA	False	NA	NA	False	NA	NA	NA	60789630	60790465	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_60789600_60790500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011526	chr13	+	1196	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222089.2	478	4	-5	-713	-5	289	multi-exon	FALSE	canonical	3	66	junction_3	212.90112467737	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTAATGGTGTC	NA	False	NA	7	True	NA	NA	NA	62245556	62260150	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259238
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011527	chr13	+	1453	4	NNC	ENSMUSG00000113566.2	novel	886	4	NA	NA	-5	289	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	227.404680886056	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTAATGGTGTC	NA	False	NA	7	True	NA	NA	NA	62245556	62260150	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_+_62245653_62254561_62254689_62254881_62254943_62258981
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011543	chr13	+	458	3	FSM	ENSMUSG00000113081.2	ENSMUST00000221637.2	452	3	4	-10	4	10	multi-exon	FALSE	canonical	3	513	junction_2	20.5	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATCTGAATTTTCCTTTG	NA	False	NA	23	True	NA	NA	NA	62411383	62421111	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_62411510_62420579_62420707_62420906
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011550	chr13	-	2299	4	Fusion	ENSMUSG00000094942.8_ENSMUSG00000113450.2	novel	2310	4	NA	NA	0	0	multi-exon	FALSE	canonical	3	23	junction_1	26.1661358757205	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	9551	False	NA	-12	True	NA	NA	NA	62614607	62516141	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62614520
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011556	chr13	-	1512	4	NNC	ENSMUSG00000113623.2	novel	633	4	NA	NA	12	419	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	48.0300831655421	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCACGTATAAAACTTTGG	NA	False	NA	NA	False	ATTAAA	-24	NA	62564845	62549887	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_-_62551118_62555228_62555290_62555482_62555610_62564751
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011561	chr13	+	193	1	Intergenic	novelGene_81	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAATCCTTTCCCTGTTAC	NA	False	NA	NA	False	NA	NA	NA	62562117	62562310	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_62562100_62562300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011567	chr13	-	2239	5	NNC	ENSMUSG00000074865.12	novel	2439	5	NA	NA	-81977	0	intron_retention	FALSE	canonical	0	0	junction_4	30.9303653389351	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62800990	62664608	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_-_62666545_62667985_62668047_62668231_62668359_62699112_62699154_62800916
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011568	chr13	-	2198	4	NNC	ENSMUSG00000074865.12	novel	2147	4	NA	NA	-81977	0	intron_retention	FALSE	canonical	3	28	junction_3	21.3124898175277	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62800990	62664608	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_-_62666545_62667985_62668047_62668231_62668359_62800916
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011569	chr13	-	2250	4	Fusion	ENSMUSG00000074863.6_ENSMUSG00000074865.12	novel	2147	4	NA	NA	2	0	intron_retention	FALSE	canonical	1	3	junction_3	30.6195289897731	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62908521	62664608	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr13_-_62666545_62667985_62668047_62668231_62668359_62908395
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011576	chr13	-	690	1	ISM	ENSMUSG00000074863.6	ENSMUST00000221996.2	2458	4	12472	0	12445	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	NA	False	NA	1	True	AATAAA	-20	NA	62820287	62819597	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr13_-_62819600_62820300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011580	chr13	-	2467	4	FSM	ENSMUSG00000074863.6	ENSMUST00000221999.2	615	4	-27	-1825	0	0	multi-exon	FALSE	canonical	3	52	junction_3	44.0176732183285	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	NA	False	NA	1	True	AATAAA	-20	NA	62832759	62819597	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_62821755_62823062_62823124_62823332_62823469_62832646
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011618	chr13	-	408	1	NIC	ENSMUSG00000021477.10	novel	6168	9	NA	NA	2852	-582	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGACTTCAGTGTGTAA	NA	False	NA	-6	True	AATAAA	-22	NA	64512017	64511609	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr13_-_64511600_64512000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011654	chr13	+	531	3	Intergenic	novelGene_82	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	12	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCTTTTGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	65965635	66218920	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_65965785_66217633_66217823_66218727
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011664	chr13	+	467	4	NNC	ENSMUSG00000113760.2	novel	569	4	NA	NA	-81633	5359	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	37.3303570242176	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCCTTGGTTATGAAATC	NA	False	NA	NA	False	NA	NA	NA	66098389	66193420	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_+_66098504_66103844_66103972_66186533_66186595_66193255
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011671	chr13	+	554	3	NNC	ENSMUSG00000113760.2	novel	569	4	NA	NA	-81618	-1200	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	37	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCTGTATAGTCTCATAA	NA	False	NA	NA	False	NA	NA	NA	66098404	66186861	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_+_66098504_66186206_66186334_66186533
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011700	chr13	-	2717	4	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7316	967	intron_retention	FALSE	canonical	3	55	junction_2	9.53356643071673	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	1878	False	NA	-1	True	NA	NA	NA	66439281	66427982	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_-_66430404_66431569_66431631_66431830_66431958_66439173
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011711	chr13	-	532	4	NNC	ENSMUSG00000074832.12	novel	515	5	NA	NA	-7	3561	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	81.8508127971589	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCCTTGGTCATGAAATG	NA	False	NA	1	True	NA	NA	NA	66589186	66574389	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_-_66574628_66581478_66581540_66581739_66581867_66589080
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011717	chr13	-	2828	4	FSM	ENSMUSG00000074832.12	ENSMUST00000172579.4	2587	4	-69	-172	-29	172	multi-exon	FALSE	canonical	3	86	junction_1	43.8254111979188	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	0	True	NA	NA	NA	66589208	66577778	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_66580291_66581478_66581540_66581739_66581867_66589080
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011735	chr13	+	1422	4	NNC	ENSMUSG00000114426.2	novel	1561	3	NA	NA	-9011	-339	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	41.3548331180555	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTCATGAATATAATCAATG	5534	False	NA	NA	False	NA	NA	NA	66711973	66723636	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_+_66712084_66720982_66721110_66721308_66721370_66722512
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011745	chr13	-	567	3	NNC	ENSMUSG00000074830.5	novel	894	4	NA	NA	-7486	-1904	at_least_one_novel_splicesite	FALSE	canonical	3	156	junction_2	39	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGTATAGTCTCATAATA	NA	False	NA	NA	False	NA	NA	NA	66828879	66820738	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_-_66821069_66821267_66821395_66828769
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011756	chr13	-	2379	5	NNC	ENSMUSG00000114353.2	novel	464	4	NA	NA	0	884	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	67.8762661023719	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	1	True	NA	NA	NA	66950624	66939249	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_-_66940626_66940876_66941596_66942701_66942763_66942962_66943090_66950528
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011759	chr13	-	2630	4	FSM	ENSMUSG00000114353.2	ENSMUST00000224917.2	464	4	0	-2166	0	884	multi-exon	FALSE	canonical	3	149	junction_1	5.73488351136175	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	1	True	NA	NA	NA	66950624	66939249	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_66941596_66942701_66942763_66942962_66943090_66950528
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011767	chr13	-	554	4	FSM	ENSMUSG00000021520.5	ENSMUST00000021993.5	535	4	7	-26	7	26	multi-exon	FALSE	canonical	3	4784	junction_3	381.861231339344	3266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCTACTGTCATAATTATT	7719	False	NA	1	True	AATAAA	-44	NA	67053435	67048654	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_67048891_67049465_67049633_67050793_67050866_67053356
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011832	chr13	+	2814	19	FSM	ENSMUSG00000021595.19	ENSMUST00000109699.11	2834	19	21	-1	-12	1	multi-exon	FALSE	canonical	3	1529	junction_7	132.889457914055	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGCATGAGACTTGGAT	NA	False	NA	32	True	AATAAA	-20	NA	69760155	69782454	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_69760308_69760419_69760578_69761056_69761162_69763530_69763637_69765524_69765597_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746_69778883_69779353_69779435_69779650_69779790_69781346_69781387_69781690
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011885	chr13	-	2486	12	FSM	ENSMUSG00000021572.10	ENSMUST00000036456.8	3641	12	19	1136	-19	-3	multi-exon	FALSE	canonical	3	27	junction_5	28.6590098045136	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACTTCTGGTTCACTCTT	NA	False	NA	-3	True	NA	NA	NA	74210399	74185754	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198178_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011890	chr13	-	1106	6	FSM	ENSMUSG00000021576.7	ENSMUST00000022060.7	1131	6	25	0	-12	0	multi-exon	FALSE	canonical	3	601	junction_2	85.1666601435092	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGGCTGGTTTTTTGCT	NA	False	NA	1	True	AATAAA	-25	NA	74465415	74451627	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_74452168_74453659_74453770_74457802_74457962_74459786_74459832_74464448_74464511_74465225
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011893	chr13	-	1100	6	FSM	ENSMUSG00000021576.7	ENSMUST00000222759.2	1376	6	284	-8	-12	0	multi-exon	FALSE	canonical	3	148	junction_2	263.104085867172	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGGCTGGTTTTTTGCT	NA	False	NA	1	True	AATAAA	-25	NA	74465415	74451627	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_74452168_74453659_74453770_74457808_74457962_74459786_74459832_74464448_74464511_74465225
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011940	chr13	+	206	1	Intergenic	novelGene_83	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCATTGTTTAGCTCTG	NA	False	NA	NA	False	NA	NA	NA	75508672	75508878	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_75508700_75508900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011941	chr13	+	389	1	FSM	ENSMUSG00000074800.5	ENSMUST00000099371.5	276	1	-33	-80	-33	80	mono-exon	FALSE	NA	NA	NA	NA	NA	11941	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCAGGAAATGACTAATTG	3130	False	NA	NA	False	AATAAA	-40	NA	75792981	75793370	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_75793000_75793400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011967	chr13	-	755	3	Intergenic	novelGene_84	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	53	junction_2	15	31	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTACTTGTGAACTGTT	NA	False	NA	0	True	NA	NA	NA	81792395	81784029	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_-_81784533_81785816_81786000_81792326
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011980	chr13	+	217	1	Intergenic	novelGene_85	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTCCACAATACTCATAT	NA	False	NA	NA	False	NA	NA	NA	81843286	81843503	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_81843300_81843500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011981	chr13	+	1072	5	FSM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	160	-6	-41	6	multi-exon	FALSE	canonical	3	1314	junction_2	32.392128673491	1018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTCTGGAACATTTGTTCA	NA	False	NA	NA	False	AATAAA	-21	NA	81931355	81945280	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074_81940267_81944772
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011985	chr13	+	742	5	NIC	ENSMUSG00000021537.10	novel	598	5	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	582.813166889699	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTGGTGTATGTTATTT	NA	False	NA	24	True	TATAAA	-17	NA	81931949	81945038	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr13_+_81931983_81932759_81932896_81934961_81935077_81940074_81940267_81944772
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000011988	chr13	+	229	1	Intergenic	novelGene_86	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCTCCAGGAATCCAACAC	NA	False	NA	NA	False	NA	NA	NA	83064773	83065002	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_83064800_83065000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012009	chr13	-	423	3	FSM	ENSMUSG00000017778.15	ENSMUST00000017922.9	315	3	-24	-84	-24	5	multi-exon	FALSE	canonical	3	419	junction_2	5048	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCGTCTCTGCAATAAG	NA	False	NA	-9	True	AATAAA	-21	NA	86194917	86192929	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_86193028_86193845_86193973_86194719
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012013	chr13	-	1157	2	FSM	ENSMUSG00000017778.15	ENSMUST00000132233.2	709	2	-443	-5	-16	0	multi-exon	FALSE	canonical	3	10515	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	False	NA	-14	True	AATAAA	-16	NA	86194909	86192934	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_86193028_86193845
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012027	chr13	+	1509	1	ISM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	17250	4376	16611	3220	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCGTCTAGTTTTGATA	NA	False	NA	NA	False	AATAAA	-14	NA	90254491	90256000	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr13_+_90254500_90256000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012036	chr13	+	350	3	NIC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-52	6	combination_of_known_splicesites	FALSE	canonical	2	14	junction_1	9897.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr13_+_91071319_91072444_91072566_91072655
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012041	chr13	+	897	3	NIC	ENSMUSG00000049517.9	novel	658	4	NA	NA	-52	6	intron_retention	FALSE	canonical	3	19809	junction_2	171.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr13_+_91071866_91072444_91072566_91072655
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012046	chr13	+	692	4	FSM	ENSMUSG00000049517.9	ENSMUST00000224463.2	658	4	-27	-7	-27	6	multi-exon	FALSE	canonical	3	45	junction_1	9398.7280108652	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071308	91072849	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_91071526_91071705_91071866_91072444_91072566_91072655
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012070	chr13	+	185	1	Intergenic	novelGene_87	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTAGTTTACACTGTA	NA	False	NA	NA	False	NA	NA	NA	93751464	93751649	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_93751500_93751600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012093	chr13	+	188	1	Intergenic	novelGene_88	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACAGAATTCTGCATTAT	NA	False	NA	NA	False	NA	NA	NA	95665199	95665387	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_95665200_95665400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012095	chr13	-	924	1	FSM	ENSMUSG00000114133.2	ENSMUST00000220449.2	2161	1	0	1237	0	-1237	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTTTTTTCCTAACAAAT	NA	False	NA	NA	False	AATAAA	-21	NA	96217884	96216960	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_96217000_96217900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012112	chr13	+	3141	21	FSM	ENSMUSG00000021666.17	ENSMUST00000161639.8	3157	21	16	0	-4	0	multi-exon	FALSE	canonical	3	138	junction_1	31.6045487232455	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCTAACAAATCTTAATT	NA	False	NA	NA	False	AATAAA	-25	NA	97274501	97312959	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012130	chr13	+	3291	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	48	0	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619256	97633515	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012166	chr13	+	95	1	FSM	ENSMUSG00000062461.8	ENSMUST00000080866.8	447	1	415	-63	415	63	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAAGAACTTTATTTCTG	NA	False	NA	NA	False	ATTAAA	-40	NA	99041146	99041241	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_99041100_99041200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012169	chr13	+	219	1	Intergenic	novelGene_89	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAATTGGTGGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	99149880	99150099	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_99149900_99150100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012173	chr13	+	139	1	Intergenic	novelGene_90	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGTTCCGTTCTGTTCGTG	9292	False	NA	NA	False	NA	NA	NA	99257312	99257451	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_99257300_99257500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012202	chr13	+	1146	8	NIC	ENSMUSG00000021645.17	novel	1222	9	NA	NA	-14	3	combination_of_known_splicesites	FALSE	canonical	2	5	junction_7	255.364964915163	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGACTTTATAGATATTT	NA	False	NA	20	True	AATAAA	-16	NA	100261387	100274201	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100273888
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012209	chr13	-	1587	16	FSM	ENSMUSG00000021639.18	ENSMUST00000066984.14	1656	16	-35	104	-17	-104	multi-exon	FALSE	canonical	3	225	junction_10	29.724213848122	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGAGCCATTTTTATTCT	NA	False	NA	0	True	ATTAAA	-26	NA	100629104	100605191	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012235	chr13	+	1282	3	FSM	ENSMUSG00000052293.15	ENSMUST00000185767.7	778	3	41	-545	0	0	multi-exon	FALSE	canonical	3	39	junction_1	620	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTACTTTGGCAGTT	NA	False	NA	NA	False	AATAAA	-21	NA	100788132	100792568	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_100788295_100790698_100790792_100791541
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012249	chr13	-	1171	10	NIC	ENSMUSG00000069089.9	novel	1988	12	NA	NA	-5	-2	combination_of_known_splicesites	FALSE	canonical	3	8	junction_8	235.310564421564	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTGATTTATGATTAG	NA	False	NA	-31	True	AATAAA	-1	NA	100867413	100839819	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100866965_100867026_100867281
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012253	chr13	-	1009	5	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_4	428.198843996571	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881584	100872462	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881130_100881238
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012255	chr13	-	917	4	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	219	junction_3	475.847547948804	96	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881584	100872462	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881238
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012263	chr13	-	1114	4	FSM	ENSMUSG00000061474.12	ENSMUST00000109333.8	701	4	-417	4	-417	-4	multi-exon	FALSE	canonical	3	1082	junction_3	81.5693297481079	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATGTCCCTTTTCTGTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	100881584	100872466	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012313	chr13	-	1713	12	FSM	ENSMUSG00000021711.18	ENSMUST00000144060.8	3538	12	29	1796	-15	9	multi-exon	TRUE	canonical	3	331	junction_5	157.730704704606	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTATTTTCTGTATAT	NA	False	NA	-16	True	AAAACA	-42	NA	104314948	104280452	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012319	chr13	-	1626	2	FSM	ENSMUSG00000118537.2	ENSMUST00000133280.2	1609	2	-20	3	-20	-3	multi-exon	FALSE	canonical	3	68	junction_1	0	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATGTCTGATTTTGTAT	NA	False	NA	NA	False	ATTAAA	-11	NA	104314967	104310232	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_104311513_104314621
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012326	chr13	-	2370	11	FSM	ENSMUSG00000021713.10	ENSMUST00000022226.6	2342	11	-21	-7	0	7	multi-exon	FALSE	canonical	3	267	junction_6	27.1368752806951	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTCAAATGACTGGTTAT	NA	False	NA	-6	True	TATAAA	-18	NA	104365351	104341624	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104356544_104356993_104359345_104359467_104359599_104359701_104361857_104361961_104365113
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012341	chr13	-	2049	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	0	22	0	-22	multi-exon	FALSE	canonical	3	502	junction_8	84.1316241226496	371	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTTTTTTGCATATAAG	NA	False	NA	-21	True	AATAAA	-15	NA	104953461	104767669	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012372	chr13	+	1936	3	FSM	ENSMUSG00000071180.6	ENSMUST00000095458.6	1918	3	-15	-3	-15	3	multi-exon	FALSE	canonical	3	97	junction_1	47	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTGAGTTTTTGTCTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	108180964	108185709	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_108181021_108182958_108183103_108183973
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012380	chr13	+	2120	12	FSM	ENSMUSG00000021694.19	ENSMUST00000054835.15	2111	12	-9	0	-2	0	multi-exon	FALSE	canonical	3	49	junction_3	12.8281714780819	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	7	True	ATTAAA	-18	NA	108295262	108331519	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012450	chr13	+	205	1	Intergenic	novelGene_91	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTGATATTTATGAAATAA	NA	False	NA	NA	False	NA	NA	NA	114135900	114136105	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr13_+_114135900_114136100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012459	chr13	-	594	4	FSM	ENSMUSG00000021764.9	ENSMUST00000225035.2	571	4	-19	-4	-2	4	multi-exon	FALSE	canonical	3	165	junction_3	707.770364517256	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGGCAGTTTCTATTTT	NA	False	NA	-14	True	AATAAA	-23	NA	114524618	114425179	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114524494
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012465	chr13	-	219	1	ISM	ENSMUSG00000021764.9	ENSMUST00000022286.8	1698	5	99392	853	99183	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114425402	114425183	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr13_-_114425200_114425400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012476	chr13	+	2269	9	FSM	ENSMUSG00000021728.9	ENSMUST00000022242.9	2923	9	340	314	-104	-314	multi-exon	FALSE	canonical	3	356	junction_8	42.5617198900608	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCCTTGTGCTGCTGGCT	NA	False	NA	NA	False	AATAAA	-26	NA	117357147	117410637	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012481	chr13	+	793	1	FSM	ENSMUSG00000021728.9	ENSMUST00000224455.2	2136	1	1331	12	1331	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATCTTAAAACTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	117365892	117366685	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_117365900_117366700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012489	chr13	+	516	1	ISM	ENSMUSG00000025451.16	ENSMUST00000026520.14	2551	11	28752	29	8244	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTTTGTTTCTTCTAAC	NA	False	NA	17	True	AATAAA	-2	NA	119594209	119594725	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr13_+_119594200_119594700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012494	chr13	+	3362	11	FSM	ENSMUSG00000093930.3	ENSMUST00000224188.2	3464	11	-76	178	9	0	multi-exon	FALSE	canonical	3	184	junction_1	180.959553491934	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	15	True	AATAAA	-15	NA	120151923	120169618	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012495	chr13	+	3308	10	FSM	ENSMUSG00000093930.3	ENSMUST00000179869.3	3245	10	-58	-5	9	5	multi-exon	FALSE	canonical	3	428	junction_1	79.8526420630178	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTTGAGTGTTTTTTTT	NA	False	NA	20	True	AATAAA	-20	NA	120151923	120169623	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012538	chr14	+	1202	3	FSM	ENSMUSG00000012405.17	ENSMUST00000112598.9	802	3	-360	-40	-16	0	multi-exon	FALSE	canonical	3	10327	junction_1	2922.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198709	4200736	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_4199418_4199652_4199790_4200379
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012545	chr14	+	2024	1	NIC	ENSMUSG00000012405.17	novel	1922	4	NA	NA	-13	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198712	4200736	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr14_+_4198700_4200700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012591	chr14	-	1195	5	FSM	ENSMUSG00000033111.17	ENSMUST00000225294.2	1191	5	-4	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	54.4196655631032	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGCCCTCTTGAGTCTC	NA	False	NA	-8	True	AATAAA	-18	NA	10185509	10167783	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012598	chr14	+	1224	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-183	-705	-183	705	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	AATAAA	-45	NA	13669254	13670478	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_13669300_13670500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012604	chr14	+	197	1	Intergenic	novelGene_92	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGACTCATATTTGATAT	NA	False	NA	NA	False	NA	NA	NA	14295698	14295895	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_+_14295700_14295900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012644	chr14	-	1962	7	NNC	ENSMUSG00000094132.8	novel	882	7	NA	NA	-5	1059	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	11.3284303119776	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGTATGCTTCAGCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	17614202	17592862	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_-_17593998_17596548_17596732_17597407_17597540_17598489_17598653_17609286_17609438_17612629_17612744_17614118
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012646	chr14	-	2095	8	NNC	ENSMUSG00000094132.8	novel	882	7	NA	NA	-5	1057	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10.6961751699056	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTATGCTTCAGCT	NA	False	NA	NA	False	AATAAA	-17	NA	17614202	17592864	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_-_17593998_17596548_17596732_17597407_17597540_17598489_17598653_17599386_17599522_17609286_17609438_17612629_17612744_17614118
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012654	chr14	-	1724	5	Fusion	ENSMUSG00000096488.2_ENSMUSG00000095195.8	novel	1955	7	NA	NA	4	2	multi-exon	FALSE	canonical	0	0	junction_3	1.6393596310755	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGTATGCTTCTGCGTT	NA	False	NA	NA	False	AATAAA	-19	NA	19057155	18875550	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr14_-_18876696_18880194_18880378_18881053_18881186_18882135_18882299_19057054
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012679	chr14	-	765	2	FSM	ENSMUSG00000045107.6	ENSMUST00000059666.6	2315	2	63	1487	63	337	multi-exon	FALSE	canonical	3	53	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTGGTTTGTCTCATTA	5368	False	NA	NA	False	TATAAA	-15	NA	20133188	20127190	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_20127713_20132945
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012700	chr14	-	842	3	FSM	ENSMUSG00000049960.5	ENSMUST00000224286.2	801	3	-37	-4	-37	4	multi-exon	TRUE	canonical	3	91	junction_2	790	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTCCTCTGGCATAGCCTG	8641	False	NA	-32	True	AATAAA	-18	NA	20443588	20441290	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_20441529_20441960_20442222_20443245
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012717	chr14	+	580	3	FSM	ENSMUSG00000063787.5	ENSMUST00000071215.5	616	3	40	-4	-12	4	multi-exon	FALSE	canonical	3	1953	junction_1	51.5	485	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTCTTCTAATTAGCT	NA	False	NA	37	True	AATAAA	-20	NA	20753113	20754497	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_20753266_20753357_20753477_20754188
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012747	chr14	-	149	1	Intergenic	novelGene_93	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	21528365	21528216	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_-_21528200_21528400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012800	chr14	+	764	6	FSM	ENSMUSG00000025290.18	ENSMUST00000224568.2	714	6	-14	-36	-14	1	multi-exon	FALSE	canonical	3	776	junction_1	4812.24305288085	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGCTCTGCTGCTTATT	NA	False	NA	18	True	AATAAA	-17	NA	24540820	24545927	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_24541093_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012808	chr14	+	1565	6	FSM	ENSMUSG00000021868.8	ENSMUST00000022419.7	1549	6	-16	0	0	0	multi-exon	FALSE	canonical	3	443	junction_3	21.4532048887806	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGTCTCTGGTTTTGGA	376	False	NA	NA	False	AATAAA	-18	NA	25694577	25700892	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_25694848_25695896_25695928_25696427_25696517_25697996_25698094_25698689_25698766_25699890
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012829	chr14	-	1456	4	FSM	ENSMUSG00000072676.13	ENSMUST00000185006.9	2147	4	-6	697	-6	173	multi-exon	FALSE	canonical	3	137	junction_1	7.40870359029762	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCACATGCATCTGAGTT	NA	False	NA	-5	True	AGTAAA	-18	NA	25928102	25924420	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927721
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012835	chr14	+	202	1	Intergenic	novelGene_94	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGTCAATTTCAAAATCC	NA	False	NA	NA	False	NA	NA	NA	26323841	26324043	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_+_26323800_26324000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012842	chr14	+	763	1	ISM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	18005	417	2948	27	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGATTGTGTGTTCTTTTG	NA	False	NA	5	True	AATAAA	-15	NA	26377233	26377996	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_+_26377200_26378000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012855	chr14	+	193	1	Intergenic	novelGene_95	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAATGGCGTCTTGCTTAC	2538	False	NA	NA	False	NA	NA	NA	26675718	26675911	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_+_26675700_26675900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012861	chr14	+	176	1	Intergenic	novelGene_96	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAGCCCAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	26735093	26735269	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_+_26735100_26735300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012878	chr14	+	204	1	Intergenic	novelGene_97	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTGTGGTTTAAAACAGAA	NA	False	NA	NA	False	NA	NA	NA	30259575	30259779	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_+_30259600_30259800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012893	chr14	-	960	4	FSM	ENSMUSG00000021917.17	ENSMUST00000226782.2	949	4	-6	-5	-6	5	multi-exon	FALSE	canonical	3	1717	junction_2	34.7658836600865	866	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTCTTTTTGCAGTG	NA	False	NA	1	True	AATAAA	-22	NA	30723572	30721777	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012911	chr14	-	1798	15	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-21	0	combination_of_known_junctions	TRUE	canonical	3	108	junction_10	218.114789100808	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741022	30734389	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012923	chr14	-	206	1	NIC	ENSMUSG00000042354.8	novel	1765	15	NA	NA	916	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30734595	30734389	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr14_-_30734400_30734600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012932	chr14	-	201	1	ISM	ENSMUSG00000021910.16	ENSMUST00000168206.8	4990	17	20400	0	2598	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAGTCTTCAAGGTTATA	NA	False	NA	-4	True	AATAAA	-17	NA	30893087	30892886	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_-_30892900_30893100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000012982	chr14	+	3403	10	FSM	ENSMUSG00000056234.16	ENSMUST00000163336.8	4065	10	60	602	-13	6	multi-exon	TRUE	canonical	3	533	junction_6	51.0289194210886	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTTTGTGTTATCTGT	NA	False	NA	4	True	ATTAAA	-19	NA	31881881	31901210	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_31881968_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013014	chr14	+	553	1	FSM	ENSMUSG00000078126.5	ENSMUST00000104925.5	468	1	-14	-71	-14	71	mono-exon	FALSE	NA	NA	NA	NA	NA	2515	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTTACTTCATGATTAT	2260	False	NA	NA	False	AATATA	-39	NA	33892597	33893150	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_33892600_33893200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013055	chr14	-	1391	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	336	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	1819.95631815711	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTCTTTAGTCTCCAT	NA	False	NA	-8	True	AGTAAA	-20	NA	36857252	36842444	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_-_36842740_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013061	chr14	-	1371	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	-1120	at_least_one_novel_splicesite	FALSE	canonical	1	23	junction_8	1786.95934131138	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATCTCTTATGCTTTC	NA	False	NA	-31	True	AATAAA	-25	NA	36857252	36843900	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855753_36857151
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013070	chr14	-	546	2	Intergenic	novelGene_98	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAATTATTAATTTATTG	NA	False	NA	NA	False	AATGAA	-7	NA	37814373	37813328	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_-_37813757_37814255
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013076	chr14	-	224	1	ISM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	60137	2	27646	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTTTGGTGATAAATTGA	NA	False	NA	47	True	ATTAAA	-16	NA	40628627	40628403	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_-_40628400_40628600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013082	chr14	-	1583	6	FSM	ENSMUSG00000021792.16	ENSMUST00000022317.15	1537	6	-38	-8	-25	8	multi-exon	FALSE	canonical	3	150	junction_5	72.4911029023562	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTGCACAAGTTTCTC	NA	False	NA	-14	True	AATAAA	-19	NA	40735770	40715688	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735654
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013087	chr14	-	1621	6	NIC	ENSMUSG00000021792.16	novel	1537	6	NA	NA	6	5	combination_of_known_junctions	TRUE	canonical	3	24	junction_5	120.659852477947	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTCTGTGCACAAGTTT	NA	False	NA	-17	True	AATAAA	-16	NA	40735739	40715691	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735582
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013095	chr14	+	1123	2	Intergenic	novelGene_99	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	18	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGAATGTGTTTGTCAATC	8682	False	NA	NA	False	AATAAA	-24	NA	41146560	41148282	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_+_41146812_41147410
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013141	chr14	-	98	1	ISM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	71226	0	18969	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCTTTTGTACTTCTG	NA	False	NA	-5	True	AATAAA	-20	NA	45696349	45696251	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_-_45696300_45696300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013145	chr14	+	732	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	-2	-15	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTCAAGAAGGTGGACTC	NA	False	NA	NA	False	AATAAA	-45	NA	46321482	46322442	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_+_46321631_46321858
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013148	chr14	+	960	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	-102	-173	-2	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTCAAGAAGGTGGACTC	NA	False	NA	NA	False	AATAAA	-45	NA	46321482	46322442	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_46321500_46322400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013160	chr14	-	287	1	ISM	ENSMUSG00000015759.12	ENSMUST00000015903.12	1538	5	12455	103	4306	-103	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTGCTGTGCATTGT	NA	False	NA	NA	False	AATAAA	-14	NA	47013413	47013126	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_-_47013100_47013400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013177	chr14	+	957	6	FSM	ENSMUSG00000050335.18	ENSMUST00000142734.8	1419	6	99	363	-4	3	multi-exon	TRUE	canonical	3	33	junction_1	23.7941169199447	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCATCGCTTTGGGGGTT	NA	False	NA	4	True	AATAAA	-17	NA	47611368	47623254	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_47611410_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013181	chr14	-	2768	19	FSM	ENSMUSG00000037544.15	ENSMUST00000043296.10	2964	19	194	2	-6	-2	multi-exon	FALSE	canonical	3	355	junction_12	54.7968470301389	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTTTCTTCGCATTGT	NA	False	NA	NA	False	NA	NA	NA	47655670	47625237	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013196	chr14	+	122	1	ISM	ENSMUSG00000021846.10	ENSMUST00000073150.6	5900	6	135880	4064	57987	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATCTCAACTGCCATGC	NA	False	NA	NA	False	ATTAAA	-21	NA	48494159	48494281	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_+_48494200_48494300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013219	chr14	-	1199	2	NNC	ENSMUSG00000071470.5	novel	444	3	NA	NA	5090	-4309	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	48	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTATGAGTTGTTCTT	1962	False	NA	0	True	AATAAA	-16	NA	51040099	51035570	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_-_51036607_51039936
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013223	chr14	-	1088	1	NIC	ENSMUSG00000071470.5	novel	444	3	NA	NA	-3473	-4309	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTATGAGTTGTTCTT	5403	False	NA	0	True	AATAAA	-16	NA	51036658	51035570	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr14_-_51035600_51036700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013227	chr14	-	308	2	NNC	ENSMUSG00000071470.5	novel	444	3	NA	NA	5090	-5249	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAGATTGGGAGATTT	1962	False	NA	NA	False	NA	NA	NA	51040099	51036510	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_-_51036656_51039936
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013230	chr14	-	370	1	Intergenic	novelGene_100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGTGTTTTTTTTTTTG	1962	False	NA	NA	False	NA	NA	NA	51040099	51039729	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_-_51039700_51040100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013240	chr14	+	1878	16	NIC	ENSMUSG00000036023.7	novel	1894	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	196.861327391192	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGCTTCTTTGGGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	51045381	51058758	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr14_+_51045445_51047462_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013249	chr14	-	176	1	Intergenic	novelGene_101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAATTAATTAATTA	4427	False	NA	NA	False	NA	NA	NA	51142357	51142181	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_-_51142200_51142400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013251	chr14	-	1295	11	FSM	ENSMUSG00000006289.15	ENSMUST00000159292.8	3388	11	5	2088	5	0	multi-exon	TRUE	canonical	3	62	junction_9	170.895289578151	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTTGTGTTTTTCAGTT	NA	False	NA	-1	True	AATAAA	-24	NA	51162345	51153138	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154910_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013256	chr14	+	1278	5	FSM	ENSMUSG00000035960.15	ENSMUST00000049411.12	1239	5	-32	-7	-32	7	multi-exon	FALSE	canonical	3	716	junction_1	194.901898400195	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGTCCCTTTGTGAA	147	False	NA	21	True	AATAAA	-22	NA	51162392	51164603	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_51162487_51162669_51162782_51162973_51163162_51163617_51163811_51163912
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013263	chr14	+	1420	4	FSM	ENSMUSG00000035960.15	ENSMUST00000154288.3	935	4	-1	-484	-1	7	multi-exon	FALSE	canonical	3	1054	junction_2	68.6310587286997	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGTCCCTTTGTGAA	188	False	NA	21	True	AATAAA	-22	NA	51162433	51164603	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_51162782_51162973_51163162_51163617_51163811_51163912
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013276	chr14	+	1227	6	FSM	ENSMUSG00000068417.9	ENSMUST00000095925.5	1372	6	149	-4	-103	4	multi-exon	FALSE	canonical	2	7	junction_3	36.6911433454996	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	51193597	51202210	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_51193686_51196971_51197142_51200561_51200666_51200846_51201023_51201135_51201327_51201712
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013287	chr14	-	110	1	ISM	ENSMUSG00000004558.16	ENSMUST00000004673.15	2099	16	8040	10	3551	2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATTGTTAATCCGGGTC	NA	False	NA	-9	True	AATAAA	-18	NA	52142847	52142737	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_-_52142700_52142800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013339	chr14	-	1372	8	NIC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	7	4	combination_of_known_junctions	FALSE	canonical	3	633	junction_2	1401.10168023857	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTCTCCAAAATAATCTCT	8732	False	NA	46	True	AATAAA	-22	NA	52341478	52312251	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013357	chr14	+	177	1	Intergenic	novelGene_102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAAAAGTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	52376545	52376722	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_+_52376500_52376700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013368	chr14	+	324	1	ISM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	15043	1889	8455	-1889	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTTAAATGTGCATTC	NA	False	NA	8	True	AGTAAA	-20	NA	52531645	52531969	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_+_52531600_52532000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013370	chr14	-	2007	11	FSM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	4	14	0	2	multi-exon	FALSE	canonical	3	126	junction_7	19.5910693939866	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGAAGTGAAATTATGG	NA	False	NA	-30	True	AATAAA	-25	NA	52542581	52532311	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013374	chr14	+	189	1	Antisense	novelGene_ENSMUSG00000022160.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGGGATTACAGGCATG	NA	False	NA	NA	False	NA	NA	NA	52541201	52541390	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Antisense_chr14_+_52541200_52541400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013409	chr14	+	428	5	FSM	ENSMUSG00000010406.13	ENSMUST00000010550.12	418	5	-9	-1	-9	1	multi-exon	FALSE	canonical	3	1056	junction_1	196.876230154887	694	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTGGCTTTCTTTTCT	NA	False	NA	28	True	AATAAA	-29	NA	54664356	54667214	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_54664418_54664490_54664549_54664627_54664696_54666040_54666106_54667038
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013451	chr14	+	914	1	Genic_Genomic	ENSMUSG00000092232.2_ENSMUSG00000022194.16	novel	NA	NA	NA	NA	3181	758	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTTGGATGTTTTTTAG	NA	False	NA	22	True	AATAAA	-21	NA	55135470	55136384	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr14_+_55135500_55136400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013476	chr14	+	201	1	ISM	ENSMUSG00000022210.8	ENSMUST00000022821.8	1392	8	11382	0	2948	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGCGTGTTTATTTCTC	NA	False	NA	11	True	AATAAA	-26	NA	55727596	55727797	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_+_55727600_55727800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013508	chr14	-	2514	5	FSM	ENSMUSG00000002320.16	ENSMUST00000002391.15	2382	5	-37	-95	-6	0	multi-exon	FALSE	canonical	3	260	junction_2	41.5060236592232	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5169	False	NA	51	True	AATAAA	-19	NA	55880834	55873421	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013545	chr14	-	2341	17	FSM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	6	-461	0	13	multi-exon	FALSE	canonical	3	119	junction_16	115.082697847027	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTCACCGGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	55959714	55953320	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959657
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013566	chr14	+	321	1	ISM	ENSMUSG00000019297.10	ENSMUST00000019441.9	3694	10	8051	1436	4518	-1436	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTATTTTATTTTTTA	NA	False	NA	27	True	NA	NA	NA	55991200	55991521	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_+_55991200_55991500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013577	chr14	-	1299	6	FSM	ENSMUSG00000022223.10	ENSMUST00000227032.2	1023	6	0	-276	0	0	multi-exon	FALSE	canonical	3	22	junction_2	63.0441115410472	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137668	56134739	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_56135470_56135699_56135935_56136640_56136763_56137103_56137187_56137270_56137378_56137646
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013596	chr14	+	2976	14	NNC	ENSMUSG00000079184.11	novel	2939	14	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	111	junction_3	214.971059012644	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTACTAGTCGTTGTGA	1777	False	NA	32	True	ATTAAA	-18	NA	56905703	56934887	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_+_56906022_56909861_56910018_56911347_56912233_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013603	chr14	-	157	1	ISM	ENSMUSG00000021938.13	ENSMUST00000022507.13	4114	9	55719	1731	39270	1545	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTGAAAGTAAATCTCTT	NA	False	NA	0	True	AATAAA	-22	NA	56960054	56959897	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_-_56959900_56960100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013641	chr14	+	550	2	FSM	ENSMUSG00000021967.5	ENSMUST00000022538.5	2877	2	-17	2344	-17	4	multi-exon	FALSE	canonical	3	956	junction_1	0	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTCTCATACGGAATACT	NA	False	NA	29	True	ATTAAA	-21	NA	58063673	58064409	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_58063780_58063965
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013648	chr14	-	1821	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	-39	3404	-39	147	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTCAAAGAAGGATTCAGG	NA	False	NA	NA	False	AATAAA	-29	NA	58127772	58073563	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013654	chr14	+	217	1	Intergenic	novelGene_103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAACAAAACCCAGGTTAAA	NA	False	NA	NA	False	NA	NA	NA	58157627	58157844	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_+_58157600_58157800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013657	chr14	+	92	1	Intergenic	novelGene_104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGCCAGTAGAGCCGGGC	6722	False	NA	NA	False	NA	NA	NA	59508616	59508708	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_+_59508600_59508700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013670	chr14	-	1456	12	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	138.460245808757	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593476_59593600_59593765_59593900_59596924_59597033_59599182_59599305_59607902
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013673	chr14	-	1135	9	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5085	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	114.076728564594	28	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59608004	59586180	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_-_59586501_59586670_59586838_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013680	chr14	-	1431	9	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5079	0	intron_retention	FALSE	canonical	3	19	junction_1	116.070829668785	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_-_59586838_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013703	chr14	-	676	5	ISM	ENSMUSG00000060548.14	ENSMUST00000225730.2	744	6	-96	22014	-37	-22014	5prime_fragment	FALSE	canonical	3	37	junction_4	19.6532440070335	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTGTCTAGAAAGCCCT	NA	False	NA	NA	False	NA	NA	NA	61275436	61233984	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_-_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61275298
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013727	chr14	+	200	1	Genic_Genomic	ENSMUSG00000098088.2	novel	NA	NA	NA	NA	751	20	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACATTTCCTTTGAAATAA	6003	False	NA	NA	False	NA	NA	NA	61867683	61867883	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr14_+_61867700_61867900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013766	chr14	-	1479	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	1013.63834156962	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	-16	True	ATTAAA	-18	NA	63746217	63729795	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_-_63730218_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013801	chr14	+	2436	17	FSM	ENSMUSG00000021975.10	ENSMUST00000239450.2	2677	17	241	0	-16	0	multi-exon	FALSE	canonical	3	162	junction_12	28.2795752266543	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTTCTATTGCACTACA	NA	False	NA	20	True	AATAAA	-20	NA	65187734	65277284	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013809	chr14	-	2809	15	FSM	ENSMUSG00000022031.7	ENSMUST00000225355.2	2771	15	-36	-2	-13	2	multi-exon	FALSE	canonical	3	153	junction_14	90.9467493893531	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCGTGTGGTGCTTTTT	3431	False	NA	NA	False	AATAAA	-18	NA	65830537	65767895	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830430
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013832	chr14	+	1650	9	FSM	ENSMUSG00000022037.16	ENSMUST00000022616.14	1810	9	161	-1	2	1	multi-exon	TRUE	canonical	3	13	junction_1	2.72717802865893	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGGTCTGTTTTTTAT	NA	False	NA	14	True	AATAAA	-21	NA	66206092	66218997	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_66206138_66209180_66209302_66210773_66210923_66212291_66212463_66213029_66213442_66214354_66214460_66217099_66217330_66218302_66218479_66218756
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013855	chr14	+	2175	4	FSM	ENSMUSG00000022055.8	ENSMUST00000022639.8	3380	4	0	1205	0	-1205	multi-exon	FALSE	canonical	3	158	junction_3	13.589211407093	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGCTGTGGTTTTTAC	NA	False	NA	14	True	AATAAA	-28	NA	68321311	68325339	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_68322459_68323422_68323548_68323935_68324256_68324756
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013858	chr14	+	277	1	ISM	ENSMUSG00000022055.8	ENSMUST00000022639.8	3380	4	3751	1205	3751	-1205	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGCTGTGGTTTTTAC	NA	False	NA	14	True	AATAAA	-28	NA	68325062	68325339	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_+_68325100_68325300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013861	chr14	-	218	1	ISM	ENSMUSG00000022054.12	ENSMUST00000022638.6	3334	3	5084	262	5084	-262	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAATGTGTGGTGATGTG	NA	False	NA	-3	True	AATAAA	-20	NA	68357211	68356993	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_-_68357000_68357200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013898	chr14	+	192	1	Intergenic	novelGene_105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATATATCTCCTTACCTA	NA	False	NA	NA	False	NA	NA	NA	70998291	70998483	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_+_70998300_70998500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013903	chr14	+	196	1	Intergenic	novelGene_106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTAAAAAAAAAGGTAGAGA	NA	False	NA	NA	False	NA	NA	NA	73681853	73682049	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_+_73681900_73682000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013920	chr14	+	1575	11	NNC	ENSMUSG00000022110.14	novel	2229	11	NA	NA	20	-132	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_6	493.082346064022	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTGGTCTCTTTTCTTGCA	NA	False	NA	18	True	TATAAA	-21	NA	73790225	73833091	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828238_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013949	chr14	+	697	5	NIC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	2327.03506365933	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1076	False	NA	5	True	AATAAA	-16	NA	76082770	76085738	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76085538
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013951	chr14	+	708	5	NIC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	2355.03316059456	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1076	False	NA	5	True	AATAAA	-16	NA	76082770	76085738	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084683_76084801_76085538
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013978	chr14	+	1730	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	32	0	-20	0	multi-exon	FALSE	canonical	3	2255	junction_1	40	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTGTTTCTATATGACGC	6571	False	NA	31	True	AATAAA	-21	NA	76741949	76745205	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_76742282_76742688_76742738_76743856
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000013990	chr14	+	624	2	NIC	ENSMUSG00000101009.7	novel	1412	4	NA	NA	376	-1	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGCCTTCACGAGTGTG	NA	False	NA	NA	False	AATAAA	-30	NA	76915469	76924547	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr14_+_76915820_76924273
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014005	chr14	-	352	1	ISM	ENSMUSG00000022020.16	ENSMUST00000022597.15	13223	20	55920	9238	8339	-303	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTGTTTATATCTTTT	NA	False	NA	-18	True	AATAAA	-15	NA	79572298	79571946	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_-_79571900_79572300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014018	chr14	+	3055	13	FSM	ENSMUSG00000022024.11	ENSMUST00000054908.10	7392	13	-60	4397	-60	1822	multi-exon	FALSE	canonical	3	1684	junction_8	86.763527603609	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTTTCATATCTGATATT	NA	False	NA	34	True	AATAAA	-27	NA	79825070	79868239	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014022	chr14	+	124	1	ISM	ENSMUSG00000022024.11	ENSMUST00000054908.10	7392	13	41163	6219	4215	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGTGTTCGAGAGAGC	NA	False	NA	31	True	AATAAA	-20	NA	79866293	79866417	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_+_79866300_79866400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014029	chr14	-	167	1	FSM	ENSMUSG00000062093.6	ENSMUST00000228705.2	3220	1	148	2905	148	-2557	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAAAAGAACCAGACAG	NA	False	NA	65	True	AAAAAG	-16	NA	90136735	90136568	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_-_90136600_90136700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014039	chr14	-	1620	1	ISM	ENSMUSG00000033186.10	ENSMUST00000042662.10	2240	3	9954	3	9786	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCCTTGTCCTTTTGATA	NA	False	NA	NA	False	AATAAA	-15	NA	99273602	99271982	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_-_99272000_99273600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014055	chr14	+	1067	1	ISM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	15278	1	14815	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGGTGCCTTCTTGACC	NA	False	NA	21	True	AATAAA	-17	NA	99551404	99552471	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_+_99551400_99552500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014058	chr14	+	178	1	Intergenic	novelGene_107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAAAGACACCCTGA	NA	False	NA	NA	False	NA	NA	NA	101857571	101857749	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr14_+_101857600_101857700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014061	chr14	-	1863	3	NNC	ENSMUSG00000075486.11	novel	519	3	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	218.5	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGTGGTGAGCTGACAG	NA	False	NA	1	True	NA	NA	NA	101878117	101870415	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr14_-_101871829_101874389_101874543_101877820
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014072	chr14	+	921	9	FSM	ENSMUSG00000022111.10	ENSMUST00000002289.8	903	9	-18	0	9	0	multi-exon	FALSE	canonical	3	3225	junction_5	471.372729376658	619	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTTGTTTTTGCTAC	99	False	NA	22	True	AATAAA	-18	NA	101891411	101933561	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_101891542_101891643_101891656_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101928007_101928084_101932594_101932654_101933337
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014098	chr14	+	985	1	Genic_Genomic	ENSMUSG00000022125.8	novel	NA	NA	NA	NA	4916	2	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGCATCTTGTATCTTTG	NA	False	NA	8	True	NA	NA	NA	103314081	103315066	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr14_+_103314100_103315100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014101	chr14	-	1605	1	Genic_Genomic	ENSMUSG00000022120.5	novel	NA	NA	NA	NA	43484	2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTTGATGTCATCATGG	NA	False	NA	1	True	AATAAA	-20	NA	104716574	104714969	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr14_-_104715000_104716600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014105	chr14	+	1592	8	FSM	ENSMUSG00000053253.17	ENSMUST00000138283.2	1695	8	103	0	38	0	multi-exon	TRUE	canonical	3	137	junction_7	99.9552961302691	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGCCTCGTTTAGTGATT	NA	False	NA	6	True	AATAAA	-16	NA	105496290	105546305	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545549
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014117	chr14	+	2130	1	FSM	ENSMUSG00000058126.8	ENSMUST00000072359.8	2147	1	0	17	0	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGTCAAGAAGAAGATGT	NA	False	NA	NA	False	AATAAA	-45	NA	113552039	113554169	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_113552000_113554200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014135	chr14	+	1675	8	ISM	ENSMUSG00000030662.11	ENSMUST00000228277.2	4140	26	25053	2	25053	-2	3prime_fragment	FALSE	canonical	3	1174	junction_1	96.8784215985612	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCTGTGTAGAACTTCA	NA	False	NA	16	True	AATAAA	-18	NA	121178311	121184828	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr14_+_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014146	chr14	+	2197	9	FSM	ENSMUSG00000041765.7	ENSMUST00000039803.7	2139	9	-50	-8	-50	8	multi-exon	FALSE	canonical	3	342	junction_2	40.200862863874	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTTTTATACTTCTCCA	8836	False	NA	24	True	AATAAA	-24	NA	122115981	122258454	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014148	chr14	+	2112	8	NIC	ENSMUSG00000041765.7	novel	2139	9	NA	NA	-20	1	combination_of_known_splicesites	FALSE	canonical	3	29	junction_5	124.704057836208	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCAGTAGTTTTTATAC	8866	False	NA	17	True	AATAAA	-17	NA	122116011	122258447	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122231636_122231883_122246202_122246326_122257361
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014179	chr14	+	2373	23	NIC	ENSMUSG00000041650.16	novel	2592	24	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_16	27.256245019481	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTAGTTTGCCCTTTTTTC	NA	False	NA	16	True	AATAAA	-19	NA	122771742	123127240	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014202	chr15	+	571	4	NNC	ENSMUSG00000041841.9	novel	556	4	NA	NA	-24	1	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	9909.82187304876	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGGTGATCTAAGGTA	2273	False	NA	37	True	AATAAA	-18	NA	5146151	5148160	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_+_5146390_5146768_5146905_5147100_5147186_5148048
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014207	chr15	+	97	1	ISM	ENSMUSG00000041841.9	ENSMUST00000045356.9	835	4	1940	459	1299	4	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTGATCTAAGGTACTT	4188	False	NA	40	True	AATAAA	-21	NA	5148066	5148163	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_+_5148100_5148200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014223	chr15	+	1031	1	FSM	ENSMUSG00000067547.7	ENSMUST00000146631.2	819	1	-67	-145	-67	145	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTATTATTCCAGAAAGAT	NA	False	NA	NA	False	AATAAA	-39	NA	6683336	6684367	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_6683300_6684400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014249	chr15	-	454	2	Antisense	novelGene_ENSMUSG00000049152.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	40	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCGTCTTGGCTACATTT	8	False	NA	2	True	NA	NA	NA	9357162	9354832	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Antisense_chr15_-_9355049_9356924
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014256	chr15	-	1217	8	ISM	ENSMUSG00000044224.17	ENSMUST00000136591.8	2060	12	9335	7	226	2	3prime_fragment	FALSE	canonical	3	660	junction_1	75.8117970465585	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGCCTTTCTGCTTCAG	9300	False	NA	-22	True	ATTAAA	-16	NA	10461267	10446848	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_-_10447313_10447781_10447858_10449661_10449835_10451640_10451684_10452291_10452451_10454855_10454944_10460040_10460193_10461205
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014259	chr15	-	2685	10	FSM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	-18	-3	-18	3	multi-exon	FALSE	canonical	3	2074	junction_1	190.855449147086	650	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGGCTTTTTTTTTTTTCG	NA	False	NA	NA	False	AATAAA	-28	NA	10486051	10474861	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014276	chr15	+	1421	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	324.625639091486	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTACTGTCCTGTGTCTT	32	False	NA	26	True	AATAAA	-31	NA	10486131	10493774	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_+_10486368_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014294	chr15	-	3376	5	FSM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	0	-4	0	4	multi-exon	FALSE	canonical	3	7728	junction_1	236.548620794965	5750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTATCCCATGTT	809	False	NA	NA	False	AATAAA	-15	NA	11996144	11981420	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996036
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014297	chr15	-	680	5	NNC	ENSMUSG00000022205.16	novel	3372	5	NA	NA	4	66	at_least_one_novel_splicesite	FALSE	canonical	3	110	junction_3	3385.52362087462	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTACCCTTTTTTGAT	859	False	NA	79	True	AATAAA	-22	NA	11996094	11984060	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_-_11984384_11986541_11986651_11991044_11991162_11993874_11993948_11996036
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014299	chr15	-	690	5	NNC	ENSMUSG00000022205.16	novel	3372	5	NA	NA	4	66	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_4	3424.13773817585	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTACCCTTTTTTGAT	859	False	NA	79	True	AATAAA	-22	NA	11996094	11984060	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996032
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014314	chr15	-	973	1	Intergenic	novelGene_108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAACAAAGGTAATTCTC	9796	False	NA	NA	False	NA	NA	NA	22705094	22704121	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_-_22704100_22705100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014317	chr15	-	738	1	ISM	ENSMUSG00000045763.9	ENSMUST00000058845.9	1855	2	49750	0	49684	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTGGCTTTTGGCTTGA	883	False	NA	NA	False	AATAAA	-20	NA	25364100	25363362	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_-_25363400_25364100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014333	chr15	-	1896	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	-43	0	-43	0	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	2907	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGAGCTTGATAGAGGAT	NA	False	NA	-3	True	AATAAA	-30	NA	31601993	31590945	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014348	chr15	+	1687	1	Intergenic	novelGene_109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATTCGAATTTCAAGGGT	143	False	NA	NA	False	ATTAAA	-40	NA	33221528	33223215	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_33221500_33223200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014374	chr15	-	2611	2	NIC	ENSMUSG00000058600.14	novel	886	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	3551	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	361	False	NA	-20	True	AATAAA	-27	NA	34443368	34440650	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_-_34443224_34443330
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014411	chr15	+	186	1	Intergenic	novelGene_110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCATAGTTCACCCAGTCA	NA	False	NA	NA	False	NA	NA	NA	36459656	36459842	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_36459700_36459800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014414	chr15	-	2489	5	FSM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	21	-1	-10	1	multi-exon	FALSE	canonical	3	250	junction_4	35.6195171219375	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATCGGCCATTTTCTTAG	NA	False	NA	NA	False	AATAAA	-19	NA	36496945	36477812	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_36479620_36484126_36484286_36485940_36486274_36496022_36496140_36496872
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014416	chr15	-	2824	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	-4	-3	-4	3	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	1492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTATGCTTTTATTTACT	373	False	NA	-4	True	AATAAA	-19	NA	36609221	36595901	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014421	chr15	-	2809	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	1581.86815415914	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	377	False	NA	-6	True	AATAAA	-17	NA	36609217	36595903	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603098_36603230_36605685_36605802_36605987_36606182_36608557
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014423	chr15	-	1441	8	ISM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	9434	-1	223	1	3prime_fragment	FALSE	canonical	3	5838	junction_6	322.899112316361	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	9811	False	NA	-6	True	AATAAA	-17	NA	36599783	36595903	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014427	chr15	-	1217	1	Genic_Genomic	ENSMUSG00000022285.18	novel	NA	NA	NA	NA	20937	509	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGCTTCACGTCTGTTT	242	False	NA	0	True	AATAAA	-35	NA	36771721	36770504	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr15_-_36770500_36771700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014430	chr15	-	3523	7	FSM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	274	-509	267	509	multi-exon	FALSE	canonical	3	85	junction_6	1526.66484716049	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGCTTCACGTCTGTTT	13	True	NA	0	True	AATAAA	-35	NA	36794508	36770504	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793920_36794388
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014461	chr15	-	2504	12	FSM	ENSMUSG00000037458.16	ENSMUST00000065308.13	4871	12	0	2367	0	-1553	multi-exon	FALSE	canonical	2	359	junction_2	59.7608180323933	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTTTTTCAGGCTAAAAC	NA	False	NA	-6	True	AATAAA	-18	NA	38519510	38490037	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014469	chr15	+	1960	12	NIC	ENSMUSG00000022295.9	novel	2071	13	NA	NA	5	1	combination_of_known_splicesites	FALSE	canonical	3	129	junction_8	403.492951590819	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGCTAGTCATTTATT	200	False	NA	29	True	AATAAA	-15	NA	38662192	38692688	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687259_38687354_38689368_38689467_38690776_38690904_38691855
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014481	chr15	-	714	2	ISM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	72601	0	8382	0	3prime_fragment	FALSE	canonical	3	216	junction_1	0	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGTGTCTGAGTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	39648265	39646092	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_-_39646506_39647964
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014484	chr15	+	563	3	NNC	ENSMUSG00000115367.2	novel	1064	3	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	1	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTCTGCCGTCACCTG	NA	False	NA	NA	False	AATAAA	-18	NA	40026017	40031472	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_+_40026222_40028595_40028677_40031194
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014495	chr15	+	223	1	Intergenic	novelGene_111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACATACATGTCTTGCCT	NA	False	NA	NA	False	TTTAAA	-12	NA	41810477	41810700	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_41810500_41810700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014498	chr15	-	185	1	Intergenic	novelGene_112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAGTTTTTAAAAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	41855348	41855163	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_-_41855200_41855300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014510	chr15	+	1262	11	FSM	ENSMUSG00000022337.8	ENSMUST00000022962.8	1231	11	-16	-15	-16	15	multi-exon	FALSE	canonical	3	590	junction_9	74.0384359640315	432	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTTTGTTTTATTGGA	NA	False	NA	25	True	AATAAA	-35	NA	43340608	43391174	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_43340722_43355565_43355680_43358135_43358201_43358559_43358646_43360456_43360515_43371040_43371127_43371257_43371318_43374210_43374293_43375095_43375207_43377140_43377246_43390792
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014514	chr15	-	3027	10	FSM	ENSMUSG00000038736.11	ENSMUST00000038719.8	2600	10	417	-844	-2	844	multi-exon	FALSE	canonical	3	194	junction_5	53.0869308043159	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTAGTGATGTTTGTTTT	NA	False	NA	-5	True	AATAAA	-20	NA	44291286	44238622	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263621_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014537	chr15	+	450	1	Intergenic	novelGene_113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGACCCGTTTCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	44773297	44773747	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_44773300_44773700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014543	chr15	-	1251	8	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_6	605.147173868321	25	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTGTATTTATGGTG	NA	False	NA	-12	True	AATAAA	-24	NA	51728880	51649953	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662751_51705863_51706021_51728721
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014566	chr15	+	200	1	Intergenic	novelGene_114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATCTCAGCTCCTCACTT	NA	False	NA	NA	False	NA	NA	NA	52938946	52939146	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_52938900_52939100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014569	chr15	+	209	1	Intergenic	novelGene_115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACGGCATTTGTGCATCC	NA	False	NA	NA	False	NA	NA	NA	52985798	52986007	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_52985800_52986000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014601	chr15	+	3286	21	FSM	ENSMUSG00000022364.15	ENSMUST00000022992.13	3311	21	31	-6	-4	0	multi-exon	FALSE	canonical	3	200	junction_2	36.9403234961471	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAACTGTCTTCTTTGCT	NA	False	NA	14	True	AATAAA	-21	NA	57775625	57833463	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014629	chr15	+	210	1	Intergenic	novelGene_116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTAGGACCTGCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	57954923	57955133	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_57954900_57955100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014666	chr15	+	220	1	Genic_Genomic	ENSMUSG00000022354.5	novel	NA	NA	NA	NA	5465	4	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCCTGAAGTGTTCTT	8333	False	NA	17	True	AATAAA	-18	NA	58811121	58811341	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr15_+_58811100_58811300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014671	chr15	+	2803	11	FSM	ENSMUSG00000022351.15	ENSMUST00000022977.14	2758	11	-44	-1	-40	1	multi-exon	FALSE	canonical	3	657	junction_1	53.8835782033822	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTTTTGGTTTTTGTTG	NA	False	NA	14	True	AATAAA	-19	NA	59186885	59203042	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014678	chr15	+	1118	7	FSM	ENSMUSG00000059586.11	ENSMUST00000079703.11	1054	7	-59	-5	-19	5	multi-exon	FALSE	canonical	3	776	junction_4	74.7677886674618	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCCTGTCTGCTGTA	NA	False	NA	21	True	AATAAA	-22	NA	59246076	59473538	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59463545_59463647_59463986_59464094_59473188
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014688	chr15	+	207	1	Intergenic	novelGene_117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTTAGGAAAAAAAATCTC	NA	False	NA	NA	False	NA	NA	NA	61892619	61892826	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_61892600_61892800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014699	chr15	-	1388	1	ISM	ENSMUSG00000005125.14	ENSMUST00000005256.14	2889	16	38932	3	3761	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGTGTCTTTTCCTC	9643	False	NA	-3	True	AATAAA	-15	NA	66802557	66801169	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_-_66801200_66802600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014701	chr15	-	2885	16	FSM	ENSMUSG00000005125.14	ENSMUST00000005256.14	2889	16	1	3	0	-3	multi-exon	FALSE	canonical	2	22	junction_13	7.67854152818099	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGTGTCTTTTCCTC	NA	False	NA	-3	True	AATAAA	-15	NA	66841488	66801169	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280_66818402_66820227_66820334_66831210_66831247_66832320_66832402_66841352
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014705	chr15	+	571	1	FSM	ENSMUSG00000068397.5	ENSMUST00000089785.5	483	1	-36	-52	-36	52	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTATTTTCATAATTGC	NA	False	NA	NA	False	AATAAA	-35	NA	68181631	68182202	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_68181600_68182200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014716	chr15	-	902	1	FSM	ENSMUSG00000082585.4	ENSMUST00000120421.2	648	1	-131	-123	-131	123	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTCTTTTTTGTATAGT	NA	False	NA	NA	False	AAGAAA	-45	NA	73966313	73965411	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_73965400_73966300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014730	chr15	+	744	4	NNC	ENSMUSG00000022587.15	novel	2281	4	NA	NA	-36	1	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_3	242.10511950161	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTATGTCCTGGTTGTC	8351	False	NA	28	True	AATAAA	-16	NA	74827465	74831181	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_+_74827567_74829625_74829727_74830117_74830238_74830759
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014743	chr15	-	876	4	NNC	ENSMUSG00000068348.5	novel	408	3	NA	NA	-297	392	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	34.9221356098901	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGTTTTTCTTTTGCT	1055	False	NA	1	True	AATAAA	-22	NA	75110914	75107053	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_-_75107668_75109440_75109558_75110548_75110631_75110851
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014744	chr15	-	845	4	NNC	ENSMUSG00000068348.5	novel	408	3	NA	NA	-297	392	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	32.5678778348646	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGTTTTTCTTTTGCT	1055	False	NA	1	True	AATAAA	-22	NA	75110914	75107053	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_-_75107668_75109440_75109558_75110548_75110631_75110882
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014755	chr15	+	196	1	Intergenic	novelGene_118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTTTCTCTGGAGAATA	NA	False	NA	NA	False	NA	NA	NA	75722443	75722639	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_75722400_75722600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014763	chr15	-	1175	4	Intergenic	novelGene_119	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	55	junction_3	10.1434160364686	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGGTCCCATCAGATCCT	NA	False	NA	NA	False	NA	NA	NA	75754364	75741182	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_-_75741955_75743124_75743208_75744217_75744419_75754245
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014786	chr15	-	905	7	FSM	ENSMUSG00000055762.17	ENSMUST00000116440.9	896	7	-9	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	1385.14264207297	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781155	75767336	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773102_75781093
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014817	chr15	-	182	1	Intergenic	novelGene_120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACTCATTTCCACATATA	8818	False	NA	NA	False	NA	NA	NA	75900762	75900580	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_-_75900600_75900800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014822	chr15	-	1858	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	-29	-8	-17	0	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTGTGTCTGAAATTGG	NA	False	NA	0	True	CATAAA	-25	NA	75952790	75942030	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014823	chr15	-	1907	12	FSM	ENSMUSG00000002524.18	ENSMUST00000100527.13	1881	12	-26	0	-15	0	multi-exon	FALSE	canonical	3	225	junction_7	445.848082194703	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTGTGTCTGAAATTGG	NA	False	NA	0	True	CATAAA	-25	NA	75952788	75942030	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75952698
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014835	chr15	-	185	1	Intergenic	novelGene_121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATATTTTAAAAAAAACCAA	9514	False	NA	NA	False	NA	NA	NA	76199577	76199392	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_-_76199400_76199600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014868	chr15	+	1726	9	FSM	ENSMUSG00000022553.17	ENSMUST00000161527.8	1743	9	18	-1	3	0	multi-exon	FALSE	canonical	3	22	junction_1	277.590075471008	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	24	True	AATAAA	-16	NA	76235511	76238573	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_76235860_76236195_76236242_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014907	chr15	-	138	1	ISM	ENSMUSG00000115987.2	ENSMUST00000229545.2	1136	8	3845	0	3782	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCGCCCTGTGTGATCT	5848	False	NA	-3	True	AATAAA	-39	NA	76506424	76506286	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_-_76506300_76506400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014920	chr15	-	184	1	Antisense	novelGene_ENSMUSG00000004187.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAAGTCTGGTATTGGGG	NA	False	NA	-4	True	AGTAAA	-20	NA	76552212	76552028	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Antisense_chr15_-_76552000_76552200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014938	chr15	+	219	1	Intergenic	novelGene_122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTGGACCATTAAGTTT	NA	False	NA	NA	False	NA	NA	NA	76592078	76592297	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_76592100_76592300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014949	chr15	+	1027	2	FSM	ENSMUSG00000055041.9	ENSMUST00000068407.6	1037	2	10	0	10	0	multi-exon	TRUE	canonical	3	114	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTATTCTATTAGGGAA	NA	False	NA	NA	False	ATTAAA	-23	NA	76784119	76785505	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_76784193_76784551
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014962	chr15	+	932	5	NIC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	0	intron_retention	FALSE	canonical	3	5295	junction_1	2521.41096412306	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	34	True	AATAAA	-18	NA	76788284	76790514	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_+_76788310_76788502_76788881_76789017_76789237_76790055_76790172_76790320
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014963	chr15	+	1663	5	NIC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	0	intron_retention	FALSE	canonical	3	5295	junction_1	2594.21038082882	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	34	True	AATAAA	-18	NA	76788284	76790514	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76790172_76790320
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014988	chr15	+	204	1	Intergenic	novelGene_123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTATCAGCCCCTACAAAC	NA	False	NA	NA	False	NA	NA	NA	77717118	77717322	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_77717100_77717300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000014997	chr15	-	775	1	NIC	ENSMUSG00000005354.17	novel	621	4	NA	NA	-121	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	NA	False	NA	-5	True	AATAAA	-19	NA	77800021	77799246	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_-_77799200_77800000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015000	chr15	-	1308	4	FSM	ENSMUSG00000005354.17	ENSMUST00000005487.12	1298	4	-10	0	-10	0	multi-exon	FALSE	canonical	3	1083	junction_2	92.120693778446	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	4	True	NA	-5	True	AATAAA	-19	NA	77813216	77799246	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_77800058_77808742_77808867_77811891_77812155_77813106
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015033	chr15	-	1896	8	FSM	ENSMUSG00000018169.13	ENSMUST00000018313.6	1865	8	-31	0	-31	0	multi-exon	FALSE	canonical	3	144	junction_5	11.4749060731561	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTCCAGCTTCCTGCT	NA	False	NA	-4	True	ATTAAA	-17	NA	78657706	78640081	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_78640845_78641496_78641583_78643392_78643559_78645005_78645092_78648514_78648669_78651017_78651121_78651341_78651391_78657217
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015037	chr15	+	2690	17	FSM	ENSMUSG00000033128.10	ENSMUST00000041587.8	3034	17	344	0	-17	0	multi-exon	TRUE	canonical	3	379	junction_6	54.6157028701453	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTGCTCTTGTCACCCT	NA	False	NA	18	True	AATAAA	-18	NA	78761733	78778785	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_78761818_78765237_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063_78770145_78772310_78772449_78772617_78772700_78773202_78773311_78773915_78774069_78775636_78775702_78776113_78776287_78776652_78776841_78777366_78777537_78777738_78777850_78777933
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015040	chr15	+	2519	18	FSM	ENSMUSG00000022436.17	ENSMUST00000001226.11	2375	18	-139	-5	-4	1	multi-exon	FALSE	canonical	3	356	junction_17	50.4832700370451	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAACTGGCCAAACGAAAAC	4394	False	NA	88	True	AATAAA	-21	NA	78783963	78796252	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78795538
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015062	chr15	+	2055	1	FSM	ENSMUSG00000096210.3	ENSMUST00000180086.3	2055	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGAGTGGTGCGTTTTTCT	1147	False	NA	21	True	AATAAA	-17	NA	78912649	78914704	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_78912600_78914700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015064	chr15	+	1763	9	FSM	ENSMUSG00000006378.16	ENSMUST00000006544.9	2370	9	-20	627	-20	-627	multi-exon	FALSE	canonical	3	1189	junction_6	75.224663508719	258	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGTTCCTAGACCTGTG	612	False	NA	NA	False	GATAAA	-18	NA	78915053	78921926	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952_78921075_78921342
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015070	chr15	+	1946	13	FSM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	-4	0	-4	0	multi-exon	FALSE	canonical	3	1651	junction_4	129.272537257102	455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGGTCTCATTATTAT	NA	False	NA	30	True	AGTAAA	-20	NA	78959374	78978605	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015079	chr15	+	507	5	FSM	ENSMUSG00000033020.8	ENSMUST00000040077.8	452	5	-9	-46	-9	0	multi-exon	FALSE	canonical	3	17	junction_3	888.21224940889	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGTTACCTGCGTGCTG	NA	False	NA	28	True	AATAAA	-22	NA	79025541	79035974	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_79025635_79028793_79028864_79030252_79030339_79035535_79035608_79035788
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015097	chr15	+	454	1	ISM	ENSMUSG00000068206.14	ENSMUST00000163571.8	2054	13	19840	18	2678	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGGCTCCTTGCAATG	1481	False	NA	18	True	AATAAA	-18	NA	79133212	79133666	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_+_79133200_79133700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015118	chr15	+	1162	5	FSM	ENSMUSG00000022428.9	ENSMUST00000023064.9	1147	5	-13	-2	-13	2	multi-exon	FALSE	canonical	3	177	junction_3	15.1224171348366	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGTGTAGCAAAAATAGAT	9546	False	NA	NA	False	ATTAAA	-16	NA	79543386	79551863	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_79543495_79545571_79545726_79549846_79549953_79550031_79550151_79551188
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015133	chr15	-	680	1	NIC	ENSMUSG00000022420.17	novel	1011	5	NA	NA	2749	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	NA	False	NA	NA	False	ATTAAA	-17	NA	79646333	79645653	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_-_79645700_79646300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015143	chr15	-	2464	1	Genic_Genomic	ENSMUSG00000053411.17	novel	NA	NA	NA	NA	14252	6	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	2259	False	NA	-1	True	ATTAAA	-30	NA	79802465	79800001	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr15_-_79800000_79802500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015149	chr15	-	1548	10	FSM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	-28	-169	-28	169	multi-exon	FALSE	canonical	3	16287	junction_9	4874.04926341766	12911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGCTCCACATTTCTTT	3490	False	NA	NA	False	NA	NA	NA	79967635	79961822	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015155	chr15	-	1283	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_4	10100.2868056088	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	-6	True	AATAAA	-12	NA	79967553	79961996	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963001_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015158	chr15	-	1987	9	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	intron_retention	FALSE	canonical	3	214	junction_6	10244.8949482169	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	-6	True	AATAAA	-12	NA	79967553	79961996	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015160	chr15	-	1879	9	FSM	ENSMUSG00000060036.15	ENSMUST00000187578.2	1877	9	-3	1	-3	-1	multi-exon	FALSE	canonical	3	16287	junction_8	5123.08483118326	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3568	False	NA	-6	True	AATAAA	-12	NA	79967557	79961996	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965985_79966590_79966784_79967524
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015161	chr15	-	1807	9	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	intron_retention	FALSE	canonical	3	16287	junction_8	5036.50124094098	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	-6	True	AATAAA	-12	NA	79967553	79961996	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015165	chr15	-	2390	8	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	1	-1	intron_retention	FALSE	canonical	3	16287	junction_7	5307.90272968101	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	-6	True	AATAAA	-12	NA	79967553	79961996	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965985_79966590_79966784_79967524
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015169	chr15	-	1273	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	2	764	junction_9	9382.12445077748	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	-6	True	AATAAA	-12	NA	79967553	79961996	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966765_79967524
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015183	chr15	-	1564	9	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	intron_retention	FALSE	canonical	3	214	junction_6	10488.1098481805	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	-6	True	AATAAA	-12	NA	79967553	79961996	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_-_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015202	chr15	+	1656	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	73	-4	72	4	multi-exon	FALSE	canonical	3	1292	junction_2	43	1405	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGTTTTCAGTGTCATT	4218	False	NA	36	True	AATAAA	-24	NA	80139457	80141746	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_80139887_80140407_80140723_80140834
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015237	chr15	-	1612	9	NNC	ENSMUSG00000022404.9	novel	1724	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_6	109.401496790492	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAAGTTGCTCTTGATT	6879	False	NA	-10	True	AATAAA	-27	NA	81244982	81203111	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222208_81224174_81224242_81228301_81228363_81244877
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015243	chr15	-	3090	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	257	-1	-192	1	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	730	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	-18	True	AATAAA	-19	NA	81283987	81247868	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015260	chr15	-	177	1	Intergenic	novelGene_124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTACTTTTTAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	81437621	81437444	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_-_81437400_81437600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015273	chr15	-	2937	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	96	0	-6	0	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	-9	True	AATAAA	-20	NA	81614108	81588453	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015288	chr15	+	2754	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	169	-5	-6	5	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGAGTGATTGATGTCT	NA	False	NA	24	True	AAAAAG	-21	NA	81756678	81799339	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015312	chr15	+	141	1	FSM	ENSMUSG00000061848.6	ENSMUST00000072779.6	456	1	381	-66	381	66	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAAATGATGGTATGT	6655	False	NA	NA	False	AATAAA	-36	NA	81856971	81857112	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_81857000_81857100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015347	chr15	-	1738	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-10	-13	combination_of_known_junctions	FALSE	canonical	3	27	junction_6	86.2554346113913	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTTTCTAATCAACCAGG	1334	False	NA	-13	True	AATAAA	-18	NA	82223037	82213745	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82221587_82221724_82222438_82222516_82222952
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015357	chr15	+	656	3	FSM	ENSMUSG00000022452.17	ENSMUST00000023086.15	705	3	53	-4	-7	3	multi-exon	FALSE	canonical	3	1353	junction_2	125	389	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGGTTGCACTTTATTG	NA	False	NA	65	True	NA	NA	NA	82230207	82233295	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_82230471_82232100_82232242_82233043
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015367	chr15	-	591	3	FSM	ENSMUSG00000022450.7	ENSMUST00000023085.7	590	3	0	-1	0	1	multi-exon	FALSE	canonical	3	3916	junction_1	175	1319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGTCTCTCTTACTTC	6212	False	NA	-12	True	GATAAA	-22	NA	82238523	82234339	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_82234573_82235179_82235296_82238281
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015375	chr15	+	204	1	Intergenic	novelGene_125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCAAGGCTTTGACCACG	872	False	NA	NA	False	NA	NA	NA	82899943	82900147	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_82899900_82900100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015385	chr15	-	409	1	ISM	ENSMUSG00000018040.10	ENSMUST00000018184.10	4363	7	6547	2413	1362	2	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTCTCCTGAGCTCT	4523	False	NA	NA	False	AATAAA	-15	NA	83000455	83000046	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_-_8.3e+07_83000500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015393	chr15	-	3244	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	55	0	0	0	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	-11	True	AATAAA	-17	NA	83033530	83010176	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015397	chr15	-	2073	9	FSM	ENSMUSG00000018042.19	ENSMUST00000018186.16	2422	9	349	0	349	0	multi-exon	FALSE	canonical	3	1513	junction_1	61.7454451761423	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCAGCGTTTCTCTGGG	NA	False	NA	0	True	AGTAAA	-18	NA	83056444	83037694	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015405	chr15	-	2054	3	FSM	ENSMUSG00000047878.14	ENSMUST00000049530.14	2092	3	43	-5	0	5	multi-exon	FALSE	canonical	3	57	junction_2	20.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTCATGGTCACATCGTG	2266	False	NA	-3	True	AATAAA	-21	NA	83135932	83110917	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_83112796_83114714_83114859_83135900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015417	chr15	-	1274	2	ISM	ENSMUSG00000048755.10	ENSMUST00000229724.2	688	3	3642	-1030	3642	0	3prime_fragment	FALSE	canonical	3	226	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGCTCTCTCTCTCTGTG	NA	False	NA	0	True	AATAAA	-23	NA	83433446	83430997	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_-_83432144_83433318
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015420	chr15	+	878	4	FSM	ENSMUSG00000041736.8	ENSMUST00000047419.8	837	4	-41	0	-41	0	multi-exon	FALSE	canonical	3	179	junction_1	54.5119762580257	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCTGTACTTAGTGGA	NA	False	NA	21	True	AATAAA	-21	NA	83447751	83458404	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_83447846_83455585_83455797_83456400_83456540_83457970
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015429	chr15	-	911	1	ISM	ENSMUSG00000018865.10	ENSMUST00000082365.6	2383	7	28747	0	28602	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGTCTGTGTGC	NA	False	NA	-1	True	AATAAA	-17	NA	83961208	83960297	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_-_83960300_83961200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015452	chr15	+	1834	8	FSM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	-22	2954	-22	2	multi-exon	FALSE	canonical	3	399	junction_4	38.703477668983	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTCTCCCTTCCTAAGA	NA	False	NA	25	True	AATAAA	-19	NA	84807589	84824210	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_84807852_84811568_84811648_84813572_84813657_84817735_84817920_84819064_84819725_84821687_84821770_84822558_84822678_84823846
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015455	chr15	+	189	1	Intergenic	novelGene_126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCTAGGACAGCTACAAG	NA	False	NA	NA	False	NA	NA	NA	84903064	84903253	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_84903100_84903300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015472	chr15	-	1031	5	FSM	ENSMUSG00000064284.13	ENSMUST00000144067.8	761	5	2	-272	2	0	multi-exon	FALSE	canonical	3	18	junction_4	131.723906334424	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8140	False	NA	0	True	ATTAAA	-15	NA	85695843	85691172	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695751
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015488	chr15	-	2490	7	ISM	ENSMUSG00000022387.18	ENSMUST00000109381.9	5152	13	27184	0	-6185	0	3prime_fragment	FALSE	canonical	3	209	junction_6	165.160191598608	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTCCCGTGTTTGGC	8957	False	NA	-5	True	NA	NA	NA	88591252	88571236	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015495	chr15	+	194	1	Intergenic	novelGene_127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAACCCTGCCTGGGAT	NA	False	NA	NA	False	NA	NA	NA	88611279	88611473	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_88611300_88611500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015497	chr15	-	2141	10	FSM	ENSMUSG00000035845.18	ENSMUST00000162183.8	2130	10	-12	1	-12	0	multi-exon	FALSE	canonical	0	0	junction_5	14.1691718917785	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTGTCTTGTTGTTGGT	9232	False	NA	-1	True	AATAAA	-16	NA	88703533	88689447	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_88690258_88690601_88690678_88690760_88690925_88695499_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015507	chr15	+	102	1	ISM	ENSMUSG00000035828.12	ENSMUST00000042818.11	2427	6	3439	0	705	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTCTGTTTATTGGACT	NA	False	NA	30	True	ATTAAA	-20	NA	88749827	88749929	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_+_88749800_88749900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015521	chr15	+	1098	3	FSM	ENSMUSG00000054136.7	ENSMUST00000066991.7	1298	3	213	-13	213	13	multi-exon	FALSE	canonical	3	63	junction_1	15	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTGCAGTTTACCTTTC	NA	False	NA	NA	False	ATTAAA	-32	NA	89207135	89208947	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_89207337_89207479_89207604_89208174
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015574	chr15	-	851	8	FSM	ENSMUSG00000022635.10	ENSMUST00000162160.8	850	8	-10	9	-10	0	multi-exon	FALSE	canonical	3	32	junction_1	229.028917165408	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGGAATAGTGACTGGT	NA	False	NA	-7	True	AATAAA	-21	NA	93296192	93283986	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_93284165_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015621	chr15	-	1148	1	Genic_Genomic	ENSMUSG00000022464.15	novel	NA	NA	NA	NA	23988	4	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATCTTCTTTCGTGAGT	NA	False	NA	-5	True	AATAAA	-23	NA	96893844	96892696	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr15_-_96892700_96893800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015623	chr15	-	3942	16	FSM	ENSMUSG00000022464.15	ENSMUST00000023101.10	3932	16	-3	-7	-3	4	multi-exon	FALSE	canonical	3	1416	junction_8	94.9644143877063	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATCTTCTTTCGTGAGT	NA	False	NA	-5	True	AATAAA	-23	NA	96953840	96892696	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015626	chr15	+	190	1	Intergenic	novelGene_128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTCTTGTTTCCAAAAGT	NA	False	NA	25	True	NA	NA	NA	97024525	97024715	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_97024500_97024700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015656	chr15	+	2505	3	FSM	ENSMUSG00000081534.4	ENSMUST00000117892.2	2536	3	31	0	31	0	multi-exon	TRUE	canonical	3	145	junction_2	1	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTTTTTTTTTCACT	NA	False	NA	17	True	AATAAA	-18	NA	97682266	97690573	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_97682498_97687783_97687952_97688467
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015660	chr15	+	1464	8	FSM	ENSMUSG00000052369.9	ENSMUST00000229428.2	1455	8	-2	-7	-2	6	multi-exon	FALSE	canonical	3	86	junction_1	28.3318527024094	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTCTGACTGCCTGTAT	7678	False	NA	17	True	AATAAA	-23	NA	97862107	97868162	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_97862217_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015729	chr15	-	2179	17	FSM	ENSMUSG00000022999.16	ENSMUST00000023736.10	2304	17	128	-3	-48	3	multi-exon	FALSE	canonical	3	43	junction_9	10.4395581803063	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCCCTGTGTCTATCTG	NA	False	NA	0	True	AATAAA	-38	NA	98815984	98801794	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_98802390_98802545_98802708_98803796_98803864_98804124_98804216_98805417_98805492_98805774_98805853_98806400_98806478_98806556_98806641_98806729_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015748	chr15	+	208	1	Intergenic	novelGene_129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGATCTGCCCTGGCCT	NA	False	NA	NA	False	NA	NA	NA	98901269	98901477	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_98901300_98901500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015770	chr15	-	1918	15	FSM	ENSMUSG00000037570.17	ENSMUST00000041190.17	1916	15	-2	0	-2	0	multi-exon	FALSE	canonical	3	647	junction_2	85.1129201923742	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTTTATTTTTTTTTA	NA	False	NA	1	True	AATAAA	-21	NA	99149844	99140697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015791	chr15	-	2901	17	FSM	ENSMUSG00000023015.15	ENSMUST00000023756.12	2933	17	33	-1	-11	0	multi-exon	FALSE	canonical	3	453	junction_16	66.1194172974173	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	0	True	AATAAA	-20	NA	99549504	99518376	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99549387
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015794	chr15	-	3032	18	FSM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	20	0	-11	0	multi-exon	FALSE	canonical	3	159	junction_16	174.822975218819	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	0	True	AATAAA	-20	NA	99549504	99518376	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541273_99541405_99549387
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015802	chr15	+	734	2	FSM	ENSMUSG00000023020.4	ENSMUST00000023761.4	2090	2	-58	1414	-58	548	multi-exon	FALSE	canonical	3	1440	junction_1	0	417	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGTCTCTCTCTTTCTT	NA	False	NA	29	True	AGTAAA	-36	NA	99623469	99625999	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_99623730_99625525
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015811	chr15	-	1843	10	NIC	ENSMUSG00000023021.16	novel	2096	10	NA	NA	25	2	intron_retention	FALSE	canonical	3	38	junction_2	75.4335616434901	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGTCTCTTTAGTAAC	NA	False	NA	-1	True	ATTAAA	-17	NA	99670318	99633470	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_-_99634318_99636545_99636612_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015833	chr15	+	1903	2	FSM	ENSMUSG00000054619.8	ENSMUST00000067752.5	1946	2	39	4	11	-4	multi-exon	FALSE	canonical	3	19	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCTTGGCTGCATTTG	577	False	NA	8	True	AATAAA	-43	NA	100202680	100212232	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_100203226_100210874
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015849	chr15	+	1902	4	FSM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	233	0	233	0	multi-exon	FALSE	canonical	0	0	junction_1	569.007518013212	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGCATTCTTTACTTAG	NA	False	NA	18	True	AATAAA	-25	NA	100513462	100518642	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015852	chr15	+	1983	4	NIC	ENSMUSG00000000346.10	novel	542	4	NA	NA	-11	-5	combination_of_known_junctions	FALSE	canonical	3	516	junction_1	340.746565972751	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACGCCAGCATTCTTTA	NA	False	NA	13	True	AATAAA	-44	NA	100513974	100518637	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_+_100514204_100514793_100514913_100515805_100516052_100517248
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015867	chr15	+	742	1	ISM	ENSMUSG00000000531.6	ENSMUST00000000543.6	2033	8	7827	0	7827	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCAGTGTGGTAACT	958	False	NA	12	True	TATAAA	-21	NA	101129895	101130637	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_+_101129900_101130600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015875	chr15	+	1326	4	NNC	ENSMUSG00000037204.8	novel	1270	3	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	234.289469578886	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTTGGCCTGTGTCCT	8059	False	NA	31	True	AATAAA	-23	NA	101182181	101188826	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_+_101182427_101184813_101185132_101187933_101188019_101188148
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015888	chr15	+	3907	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	-46	-7	-46	7	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	877	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCAGTTTATCGCTCTT	NA	False	NA	56	True	AATAAA	-26	NA	101982161	102005615	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015900	chr15	+	2078	1	ISM	ENSMUSG00000046897.18	ENSMUST00000119800.8	3882	7	8920	0	5267	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTCTTTGAGAAGACTT	2880	False	NA	25	True	AATAAA	-26	NA	102121963	102124041	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_+_102122000_102124000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015945	chr15	+	1050	3	FSM	ENSMUSG00000023048.14	ENSMUST00000164688.2	1020	3	0	-30	0	0	multi-exon	FALSE	canonical	3	623	junction_2	60	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTAGTTTTGTTACTC	3286	False	NA	40	True	AATAAA	-43	NA	102368517	102371241	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_102368582_102368804_102369155_102370605
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015951	chr15	+	1304	11	NIC	ENSMUSG00000056851.15	novel	1086	14	NA	NA	-2	46	combination_of_known_junctions	FALSE	canonical	3	171	junction_8	134.656637415316	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACGTGGGTGTTGTTCCT	5715	False	NA	51	True	AATAGA	-19	NA	102382679	102407362	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_+_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398189_102398243_102399068_102399239_102406923
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015959	chr15	+	1314	11	ISM	ENSMUSG00000056851.15	ENSMUST00000230114.2	1086	14	1251	-364	-31	8	3prime_fragment	FALSE	canonical	3	171	junction_8	133.88760211461	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	6055	False	NA	13	True	ATTAAA	-13	NA	102383019	102407324	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_+_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398189_102398243_102399068_102399239_102406923
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015969	chr15	+	1669	9	FSM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	-146	0	-44	0	multi-exon	TRUE	canonical	3	312	junction_3	28.7706447616316	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426747	102432111	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015972	chr15	+	1462	8	NIC	ENSMUSG00000023051.12	novel	1523	9	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	125.715584408876	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426851	102432111	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_+_102427038_102427556_102427727_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015987	chr15	+	589	1	ISM	ENSMUSG00000023051.12	ENSMUST00000136968.2	2732	2	4661	0	2048	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102431522	102432111	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr15_+_102431500_102432100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015989	chr15	+	389	1	FSM	ENSMUSG00000036305.8	ENSMUST00000146505.2	151	1	-60	-178	-60	178	mono-exon	FALSE	NA	NA	NA	NA	NA	1836	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACCTTCAGAAAATATGG	NA	False	NA	NA	False	AATAAA	-45	NA	102543412	102543801	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_102543400_102543800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015993	chr15	+	198	1	Intergenic	novelGene_130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGACTCAGTGATGACCC	NA	False	NA	NA	False	NA	NA	NA	102560615	102560813	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_+_102560600_102560800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015995	chr15	-	722	5	FSM	ENSMUSG00000062683.12	ENSMUST00000185641.7	731	5	19	-10	19	10	multi-exon	FALSE	canonical	3	3206	junction_4	667.870870752723	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCCTGTGTATATTTCTT	3920	False	NA	-1	True	AATAAA	-27	NA	102579543	102571288	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145_102576215_102579452
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000015999	chr15	-	650	5	NNC	ENSMUSG00000062683.12	novel	731	5	NA	NA	80	4	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_3	1906.98328519156	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGAGTCTCCTGTGTATA	3981	False	NA	-7	True	AATAAA	-21	NA	102579482	102571294	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr15_-_102571564_102573488_102573683_102574197_102574286_102576145_102576215_102579452
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016005	chr15	-	2576	4	NIC	ENSMUSG00000062683.12	novel	731	5	NA	NA	80	0	intron_retention	FALSE	canonical	3	3206	junction_3	741.096634874442	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3981	False	NA	-11	True	AATAAA	-17	NA	102579482	102571298	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr15_-_102573683_102574197_102574291_102576145_102576215_102579452
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016033	chr15	+	1237	11	FSM	ENSMUSG00000046434.17	ENSMUST00000230171.2	1283	11	47	-1	12	1	multi-exon	FALSE	canonical	3	551	junction_9	4985.84843431888	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTTCTTGTCTTCCTT	NA	False	NA	14	True	AATAAA	-14	NA	103148905	103155120	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103154772_103154849_103154971
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016065	chr15	-	225	1	Intergenic	novelGene_131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTCCTAGCACCTATATCA	9348	False	NA	NA	False	NA	NA	NA	103314182	103313957	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr15_-_103314000_103314200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016077	chr16	+	1624	12	FSM	ENSMUSG00000014232.15	ENSMUST00000040881.14	1779	12	155	0	-59	0	multi-exon	FALSE	canonical	3	109	junction_6	16.217019933921	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGCTGCTATTATTAT	3249	False	NA	7	True	AATACA	-17	NA	3726843	3759011	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016102	chr16	+	2494	11	FSM	ENSMUSG00000004069.18	ENSMUST00000115854.4	2505	11	11	0	-7	0	multi-exon	FALSE	canonical	3	681	junction_10	58.1896898084188	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501970	4525559	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016103	chr16	+	2611	12	FSM	ENSMUSG00000004069.18	ENSMUST00000060067.12	2648	12	37	0	-7	0	multi-exon	FALSE	canonical	3	184	junction_10	248.960018695956	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501970	4525559	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4523707_4523825_4524431
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016134	chr16	+	1283	3	FSM	ENSMUSG00000022516.11	ENSMUST00000230931.2	1618	3	342	-7	-9	-6	multi-exon	FALSE	canonical	3	527	junction_2	18	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGAGTGCCATGGCCAC	86	False	NA	19	True	AATAAA	-25	NA	4756966	4758890	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_4757158_4757241_4757503_4758059
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016142	chr16	+	357	4	NIC	ENSMUSG00000096215.9	novel	382	4	NA	NA	-14	1	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	19.6694913225759	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGAGTCTGGACTGTGTTC	NA	False	NA	12	True	NA	NA	NA	4825165	4826174	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_4825190_4825607_4825753_4825835_4825919_4826069
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016158	chr16	-	487	1	Genic_Genomic	ENSMUSG00000022536.15	novel	NA	NA	NA	NA	35469	7	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATCATTGTACCCAAAT	NA	False	NA	-1	True	AATAAA	-20	NA	4832252	4831765	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr16_-_4831800_4832300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016162	chr16	-	3287	16	FSM	ENSMUSG00000022536.15	ENSMUST00000023189.15	3280	16	0	-7	0	7	multi-exon	FALSE	canonical	3	303	junction_6	221.604291976086	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATCATTGTACCCAAAT	8110	False	NA	-1	True	AATAAA	-20	NA	4867727	4831765	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016169	chr16	+	1770	13	FSM	ENSMUSG00000039427.15	ENSMUST00000100196.9	1755	13	-6	-9	-6	0	multi-exon	TRUE	canonical	3	181	junction_11	10.4029910228848	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGCTCTGAGCCTGTG	1274	False	NA	26	True	AATAAA	-27	NA	5051478	5062776	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_5051722_5052829_5052908_5053026_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058007_5058047_5058322_5058383_5059149_5059261_5060352_5060468_5061551_5061628_5062304
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016183	chr16	+	1364	11	FSM	ENSMUSG00000039345.17	ENSMUST00000046470.16	1825	11	-17	478	-17	10	multi-exon	FALSE	canonical	3	136	junction_3	20.7113495455994	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGAGATGCTGTCATTT	NA	False	NA	13	True	AATAAA	-22	NA	8288634	8308070	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_8288730_8291694_8291831_8295830_8296194_8299990_8300032_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016212	chr16	+	200	1	Intergenic	novelGene_132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTTCAATTCCCAACCT	NA	False	NA	NA	False	NA	NA	NA	8550263	8550463	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr16_+_8550300_8550500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016218	chr16	+	194	1	Intergenic	novelGene_133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTAAAAAAAGGAAAAG	NA	False	NA	NA	False	NA	NA	NA	8605620	8605814	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr16_+_8605600_8605800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016233	chr16	+	2166	11	NIC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	1	962	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	41.4305442880009	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGTGGCATTTTTCAA	NA	False	NA	10	True	ATTAAA	-15	NA	10010811	10070304	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10065308_10065462_10069241
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016246	chr16	+	161	1	ISM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	11423	897	2135	185	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTAGGGCCTGCTTCCT	NA	False	NA	17	True	AATAAA	-19	NA	10241234	10241395	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_+_10241200_10241400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016252	chr16	-	2024	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	-1	212	-1	-212	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTGTGTTGTGTTTCCA	NA	False	NA	21	True	AAGAAA	-1	NA	10810986	10777350	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016274	chr16	+	461	2	FSM	ENSMUSG00000097537.3	ENSMUST00000181526.3	2942	2	17	2464	17	-283	multi-exon	FALSE	canonical	1	6	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATCTTCAATGCTCTA	9716	False	NA	NA	False	AATAAA	-19	NA	11021246	11041196	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_11021612_11041100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016320	chr16	+	1139	10	FSM	ENSMUSG00000022681.16	ENSMUST00000023362.15	1175	10	35	1	9	-1	multi-exon	FALSE	canonical	3	538	junction_1	69.8729004852541	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTAGATGACTTTTTA	NA	False	NA	NA	False	AATAAA	-22	NA	13637149	13653314	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016324	chr16	+	1062	9	NIC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	3	-1	combination_of_known_splicesites	FALSE	canonical	3	44	junction_5	218.732963622313	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTAGATGACTTTTTA	NA	False	NA	NA	False	AATAAA	-22	NA	13637172	13653314	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13649470_13649525_13650200_13650299_13652544_13652659_13652998
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016329	chr16	+	1030	10	NNC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	8	-1	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_2	214.455958240128	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTAGATGACTTTTTA	NA	False	NA	NA	False	AATAAA	-22	NA	13637177	13653314	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_+_13637301_13644746_13644769_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016333	chr16	+	938	8	NIC	ENSMUSG00000022681.16	novel	1014	9	NA	NA	5	-1	combination_of_known_splicesites	FALSE	canonical	3	44	junction_4	287.768472695587	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTAGATGACTTTTTA	NA	False	NA	NA	False	AATAAA	-22	NA	13637193	13653314	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_13637301_13644923_13644990_13645251_13645361_13646868_13646943_13649470_13649525_13650200_13650299_13652544_13652659_13652998
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016338	chr16	+	202	1	Intergenic	novelGene_134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCACTGACTGCTCTTCCA	NA	False	NA	NA	False	NA	NA	NA	13691478	13691680	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr16_+_13691500_13691700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016354	chr16	+	2267	9	FSM	ENSMUSG00000022678.17	ENSMUST00000023359.13	2287	9	20	0	-3	0	multi-exon	FALSE	canonical	3	240	junction_8	30.8696857774743	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTGTGCATTGTATAT	NA	False	NA	96	True	AATAAA	-18	NA	13981158	14010792	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016385	chr16	+	205	1	Intergenic	novelGene_135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTTTCATTCACAAATGA	NA	False	NA	NA	False	NA	NA	NA	15401552	15401757	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr16_+_15401600_15401800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016432	chr16	-	2198	21	FSM	ENSMUSG00000022771.18	ENSMUST00000023455.14	2333	21	15	120	0	-119	multi-exon	FALSE	canonical	3	214	junction_1	124.441592725262	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATTTCTGATCTCTTCA	NA	False	NA	NA	False	AATAAA	-23	NA	16929106	16904538	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016434	chr16	-	1812	20	FSM	ENSMUSG00000022771.18	ENSMUST00000231712.2	3088	20	-10	1286	5	4	multi-exon	FALSE	canonical	3	631	junction_7	49.1072657119735	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGCCGTGGTCTCTGC	NA	False	NA	0	True	NA	NA	NA	16929116	16906465	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016442	chr16	-	1370	6	NIC	ENSMUSG00000049916.13	novel	1266	8	NA	NA	3	0	intron_retention	FALSE	canonical	3	255	junction_4	29.3011945148999	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16943001	16931261	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16939416_16942853
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016444	chr16	-	1300	8	FSM	ENSMUSG00000049916.13	ENSMUST00000093336.8	1266	8	-34	0	0	0	multi-exon	FALSE	canonical	3	35	junction_7	117.062516003464	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16943004	16931261	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16941375_16941519_16942853
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016456	chr16	-	1087	3	FSM	ENSMUSG00000022769.10	ENSMUST00000023453.10	1108	3	21	0	21	0	multi-exon	FALSE	canonical	2	125	junction_1	37.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAGTGCATGAGATGTG	NA	False	NA	-10	True	AATAAA	-18	NA	16950226	16948001	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_16948653_16949460_16949658_16949987
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016465	chr16	-	2619	4	FSM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	-10	0	-10	0	multi-exon	FALSE	canonical	3	1494	junction_3	290.114153777823	608	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGTGTATGGGTTTCT	NA	False	NA	-1	True	AATAAA	-18	NA	17019366	16969878	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_16972147_16977853_16978041_16994275_16994372_17019298
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016478	chr16	+	1639	8	FSM	ENSMUSG00000055692.22	ENSMUST00000232092.2	1627	8	-12	0	-12	0	multi-exon	TRUE	canonical	3	181	junction_2	39.2189042297154	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094160	17096525	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_17094333_17094497_17094622_17094700_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016493	chr16	+	407	1	ISM	ENSMUSG00000055692.22	ENSMUST00000164950.11	1631	10	2178	0	654	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17096118	17096525	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_+_17096100_17096500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016502	chr16	-	1239	4	FSM	ENSMUSG00000022760.18	ENSMUST00000231288.2	734	4	-1	-504	-1	0	multi-exon	FALSE	canonical	3	86	junction_3	13.0724477007517	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7266	False	NA	1	True	AATAAA	-19	NA	17348920	17345941	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016515	chr16	+	404	1	ISM	ENSMUSG00000005899.15	ENSMUST00000006053.13	4623	20	23742	1329	4509	152	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCTGGGCTGAATCTT	8952	False	NA	4	True	AATAAA	-17	NA	17460959	17461363	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_+_17461000_17461400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016520	chr16	+	128	1	Intergenic	novelGene_136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAGTATGACAAAACTTAA	NA	False	NA	NA	False	NA	NA	NA	17542210	17542338	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr16_+_17542200_17542300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016566	chr16	+	2353	12	FSM	ENSMUSG00000022721.20	ENSMUST00000115640.8	2367	12	14	0	14	0	multi-exon	FALSE	canonical	3	222	junction_1	22.0168980933485	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	283	False	NA	8	True	AATAAA	-22	NA	18066760	18071366	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016576	chr16	-	1503	9	FSM	ENSMUSG00000013539.15	ENSMUST00000115628.10	1622	9	125	-6	-3	4	multi-exon	FALSE	canonical	3	71	junction_8	57.8273291792038	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTGGCTTTTTCTAAAAAA	NA	False	NA	0	True	AATAAA	-20	NA	18161781	18118684	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161758
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016598	chr16	+	191	1	Intergenic	novelGene_137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAAGGAAGGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	18313082	18313273	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr16_+_18313100_18313300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016638	chr16	+	1333	3	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	0	0	intron_retention	TRUE	canonical	0	0	junction_2	88.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655330	18658910	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_+_18655624_18657839_18658618_18658648
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016675	chr16	+	197	1	Intergenic	novelGene_138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTCCTGATTTGATTCAA	NA	False	NA	NA	False	NA	NA	NA	20170940	20171137	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr16_+_20170900_20171100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016686	chr16	+	2077	11	FSM	ENSMUSG00000022841.16	ENSMUST00000090023.13	2080	11	2	1	0	-1	multi-exon	FALSE	canonical	3	142	junction_4	799.773617969485	516	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTTTTGTTTGGGTCTT	1355	False	NA	16	True	NA	NA	NA	20354229	20362805	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016692	chr16	+	463	1	NIC	ENSMUSG00000003234.17	novel	3090	21	NA	NA	699	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTTGCCTCTCTGCTC	NA	False	NA	4	True	ATTAAA	-13	NA	20379105	20379568	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_20379100_20379600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016699	chr16	+	2963	21	FSM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	0	-2	0	2	multi-exon	FALSE	canonical	3	2673	junction_8	225.447882003801	612	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTCTATTTCCTGGGT	NA	False	NA	25	True	AATAAA	-18	NA	20470401	20482166	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016706	chr16	+	1857	11	ISM	ENSMUSG00000045983.17	ENSMUST00000132320.8	5004	26	7644	-2	1830	0	3prime_fragment	FALSE	canonical	3	1581	junction_2	98.883820719064	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	5771	False	NA	16	True	ATTAAA	-16	NA	20504669	20511633	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_+_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016728	chr16	-	1235	1	ISM	ENSMUSG00000022853.8	ENSMUST00000023559.7	2981	7	25286	0	25286	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCATTGTGTAAAAAACTG	NA	False	NA	NA	False	AATAAA	-19	NA	21581271	21580036	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_-_21580000_21581300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016738	chr16	-	991	1	ISM	ENSMUSG00000044626.14	ENSMUST00000060673.8	3923	10	39765	1091	20567	479	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCTGTTAGAGGAATTAA	5676	False	NA	-24	True	AATACA	-16	NA	21774648	21773657	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_-_21773700_21774600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016746	chr16	-	486	2	Antisense	novelGene_ENSMUSG00000022855.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCATCTGTCTCTCCAGGT	NA	False	NA	NA	False	ACTAAA	-24	NA	21867993	21867458	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Antisense_chr16_-_21867654_21867702
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016749	chr16	-	2276	5	ISM	ENSMUSG00000033581.18	ENSMUST00000134188.8	3267	14	20898	-65	-4523	0	3prime_fragment	FALSE	canonical	3	902	junction_2	64.8478989636519	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	NA	False	NA	NA	False	AATATA	-16	NA	21886970	21877758	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016761	chr16	-	2289	10	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	-3	588	at_least_one_novel_splicesite	TRUE	canonical	3	309	junction_2	767.684686429121	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGGTTTTCTTTTTAAC	NA	False	NA	-17	True	AATAAA	-41	NA	22084679	22064609	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_-_22065617_22065939_22066011_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016763	chr16	-	2410	10	NIC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	-3	585	combination_of_known_junctions	TRUE	canonical	3	119	junction_8	731.055553444622	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGTTGGTTTTCTTTTT	NA	False	NA	-20	True	AATAAA	-38	NA	22084679	22064612	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077614_22078012_22084490
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016768	chr16	-	1464	1	ISM	ENSMUSG00000013089.16	ENSMUST00000079601.13	3975	13	56947	0	19057	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCAACCTGCCTCTTT	NA	False	NA	-13	True	AATAAA	-22	NA	22201522	22200058	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_-_22200100_22201500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016802	chr16	+	1899	11	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	441	junction_1	507.107927368524	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6051	False	NA	NA	False	AATAAA	-18	NA	22926505	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016823	chr16	+	3164	10	ISM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	-1	-1	0	0	intron_retention	FALSE	canonical	3	1315	junction_4	273.717210111296	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016824	chr16	+	1757	10	FSM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	-20	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	631.938131836603	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016825	chr16	+	2713	11	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	441	junction_1	579.353916013347	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016826	chr16	+	3024	9	ISM	ENSMUSG00000022884.17	ENSMUST00000147117.8	1947	10	4	189	0	0	intron_retention	FALSE	canonical	3	563	junction_3	488.360122629807	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016827	chr16	+	2573	10	NIC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	441	junction_1	690.354516190552	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016828	chr16	+	2004	12	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	179	junction_11	686.556372698238	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016829	chr16	+	1868	11	NNC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_10	738.769551348727	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016830	chr16	+	3027	9	ISM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	-20	0	0	0	intron_retention	FALSE	canonical	3	441	junction_1	660.216063118734	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016831	chr16	+	1865	11	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_10	666.107979234598	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016832	chr16	+	2650	9	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	563	junction_3	605.920580604422	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016833	chr16	+	1864	11	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	179	junction_10	768.532133355529	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016835	chr16	+	2008	12	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_11	653.897178967119	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016837	chr16	+	3167	10	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	441	junction_1	517.640158153648	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016839	chr16	+	2005	12	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_11	564.272309855287	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016877	chr16	+	2897	2	ISM	ENSMUSG00000022884.17	ENSMUST00000150117.2	643	3	155	-2007	128	0	3prime_fragment	FALSE	canonical	3	1869	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	387	False	NA	NA	False	AATAAA	-18	NA	22929576	22932697	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_+_22930343_22930566
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016903	chr16	-	3052	2	FSM	ENSMUSG00000051065.10	ENSMUST00000100023.3	3055	2	3	0	3	0	multi-exon	FALSE	canonical	3	119	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGTCATTATTACTT	4800	False	NA	0	True	AATAAA	-24	NA	28748422	28644927	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_28647762_28748204
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016921	chr16	-	2357	6	FSM	ENSMUSG00000047714.15	ENSMUST00000060188.14	4078	6	41	1680	41	-1680	multi-exon	FALSE	canonical	3	769	junction_1	115.541161496672	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGCTTATTTTGAATG	NA	False	NA	-1	True	AATAAA	-29	NA	31094054	31072034	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_31073552_31077154_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016929	chr16	-	978	5	FSM	ENSMUSG00000022548.15	ENSMUST00000023207.15	979	5	38	-37	38	3	multi-exon	FALSE	canonical	3	104	junction_4	27.2614654778499	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTCCTGTGGATTC	8748	False	NA	-1	True	AATAAA	-15	NA	31133374	31115936	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016948	chr16	+	206	1	Genic_Genomic	ENSMUSG00000022770.18	novel	NA	NA	NA	NA	-1796	27	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTACAAATTCCTGTTTT	6486	False	NA	NA	False	AAAAAG	-6	NA	31670672	31670878	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr16_+_31670700_31670900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016961	chr16	+	193	1	Intergenic	novelGene_139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTGTCCTTACTCAGA	NA	False	NA	NA	False	NA	NA	NA	31828258	31828451	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr16_+_31828300_31828500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016968	chr16	-	1034	6	FSM	ENSMUSG00000023791.19	ENSMUST00000096109.11	993	6	-33	-8	-31	0	multi-exon	FALSE	canonical	3	398	junction_3	17.8258239641258	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTAGTTTGTCTTCATT	NA	False	NA	0	True	AATAAA	-30	NA	31918589	31903233	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918287
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016984	chr16	+	1719	4	FSM	ENSMUSG00000035790.16	ENSMUST00000115168.9	1718	4	0	-1	0	1	multi-exon	FALSE	canonical	3	74	junction_3	4.96655480858378	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTTTTCTTCAGTCTGG	6492	False	NA	27	True	AATAAA	-27	NA	31918617	31926888	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_31918930_31921784_31921863_31922701_31922866_31925723
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000016998	chr16	+	866	1	ISM	ENSMUSG00000053774.10	ENSMUST00000115151.5	10313	11	53642	6983	53631	-1131	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAAAGTTCTCTCTTTTGA	NA	False	NA	NA	False	NA	NA	NA	32204716	32205582	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_+_32204700_32205600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017003	chr16	+	830	5	FSM	ENSMUSG00000014075.16	ENSMUST00000014220.15	838	5	8	0	8	0	multi-exon	FALSE	canonical	3	248	junction_3	20.9568008054665	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGAATAGTTTTTATG	NA	False	NA	9	True	AATAAA	-21	NA	32238527	32247917	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_32238746_32241637_32241772_32244058_32244129_32245675_32245740_32247573
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017037	chr16	+	458	5	NNC	ENSMUSG00000060636.15	novel	491	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	3998.61234523928	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCACATCTGTCC	NA	False	NA	10	True	AATAAA	-25	NA	32876851	32880535	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_+_32876881_32877485_32877549_32877759_32877913_32879048_32879194_32880467
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017046	chr16	+	486	4	FSM	ENSMUSG00000060636.15	ENSMUST00000115075.2	518	4	41	-9	41	0	multi-exon	FALSE	canonical	3	8092	junction_3	1051.6733755729	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCACATCTGTCC	NA	False	NA	10	True	AATAAA	-25	NA	32877428	32880535	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_32877549_32877759_32877913_32879048_32879194_32880467
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017065	chr16	+	235	1	Intergenic	novelGene_140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATCAAGCTGAGCACAAA	672	False	NA	NA	False	NA	NA	NA	34650624	34650859	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr16_+_34650600_34650900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017074	chr16	+	979	6	NIC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	1	-2599	combination_of_known_splicesites	FALSE	canonical	3	32	junction_2	561.414428029776	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTTACATAAAGCATCC	NA	False	NA	70	True	NA	NA	NA	34842798	34926948	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_34843006_34846194_34846313_34895975_34896065_34920125_34920248_34922315_34922495_34926684
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017085	chr16	-	1735	17	NNC	ENSMUSG00000022844.9	novel	1809	17	NA	NA	-13	4	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_16	132.890697567587	21	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTAGAGTATGTTTTCAC	NA	False	NA	-6	True	AATAAA	-18	NA	35311256	35217677	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311189
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017092	chr16	+	1664	9	NNC	ENSMUSG00000022849.6	novel	4680	9	NA	NA	14	-94	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_4	249.638457323787	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACGTGTATATTTGCTTT	5418	False	NA	13	True	AATATA	-19	NA	35590758	35645824	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634414_35634699_35634780_35637521_35637694_35639048_35639133_35645058_35645170_35645252
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017095	chr16	+	1581	8	NNC	ENSMUSG00000022849.6	novel	1703	8	NA	NA	-1	-94	at_least_one_novel_splicesite	TRUE	canonical	3	16	junction_3	208.007162357061	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACGTGTATATTTGCTTT	5435	False	NA	13	True	AATATA	-19	NA	35590775	35645824	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_+_35590910_35607559_35607746_35621906_35622089_35634284_35634425_35637521_35637694_35639048_35639133_35645058_35645170_35645252
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017105	chr16	-	716	5	FSM	ENSMUSG00000003955.9	ENSMUST00000004057.9	718	5	-79	81	0	4	multi-exon	FALSE	canonical	3	971	junction_1	40.7982842776507	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTCTTTGTTTTGTTGCTT	NA	False	NA	-1	True	AATACA	-18	NA	35891964	35864211	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891839
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017112	chr16	+	1126	5	FSM	ENSMUSG00000075229.12	ENSMUST00000164916.9	1073	5	-45	-8	-45	8	multi-exon	FALSE	canonical	3	859	junction_1	27.9284800875379	995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTGACTTTACAAGTTG	NA	False	NA	33	True	ATTAAA	-30	NA	35892009	35912498	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_35892508_35903060_35903187_35905386_35905534_35910270_35910331_35912203
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017116	chr16	+	558	4	FSM	ENSMUSG00000075229.12	ENSMUST00000163352.9	391	4	-6	-161	-6	0	multi-exon	FALSE	canonical	3	31	junction_1	405.618320866085	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTTATTTGGTGACTTT	NA	False	NA	25	True	ATTAAA	-22	NA	35892443	35912490	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_35892508_35905386_35905534_35910270_35910331_35912203
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017120	chr16	+	400	3	FSM	ENSMUSG00000075229.12	ENSMUST00000231468.2	392	3	-8	0	-4	0	multi-exon	FALSE	canonical	3	39	junction_1	434	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892445	35912481	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_35892508_35910270_35910331_35912203
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017137	chr16	+	1690	13	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	-9	1	combination_of_known_junctions	FALSE	canonical	3	130	junction_12	42.1751473685102	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAAGTCTGAAAGCATGT	NA	False	NA	16	True	NA	NA	NA	36648737	36679935	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017153	chr16	+	2027	8	FSM	ENSMUSG00000022827.15	ENSMUST00000023524.13	2031	8	4	0	4	0	multi-exon	FALSE	canonical	3	98	junction_4	11.0896163971859	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGTCATTTCTTTTAA	NA	False	NA	NA	False	ATTAAA	-20	NA	37360250	37392747	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37383977_37384129_37387681_37387754_37390749_37390789_37391391
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017209	chr16	-	2843	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	-8	-77	-8	77	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGTACTTGGTGAGCCT	6222	False	NA	-1	True	AATATA	-24	NA	38370628	38345421	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017223	chr16	+	1888	10	NNC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	1	38	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_4	281.273690360277	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	7071	False	NA	23	True	AGTAAA	-14	NA	38379060	38411746	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38399005_38399056_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017257	chr16	+	3612	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	-16	891	7	1	multi-exon	FALSE	canonical	3	958	junction_1	274.815733719887	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATCTGTCTGTAACTGTC	NA	False	NA	20	True	AATAAA	-20	NA	43960199	43982838	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017283	chr16	-	2815	5	FSM	ENSMUSG00000033157.18	ENSMUST00000066983.13	2848	5	33	0	-15	0	multi-exon	FALSE	canonical	3	291	junction_3	18.7932833746528	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGGTGAGTCCTGTGC	NA	False	NA	-5	True	NA	NA	NA	45563285	45550087	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017288	chr16	-	2068	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	25	0	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTCTACTGCCTAAAAAAA	NA	False	NA	NA	False	GATAAA	-6	NA	45975440	45973372	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_45973400_45975400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017314	chr16	+	219	1	Intergenic	novelGene_141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGGAGCTTCAGTAAGCA	NA	False	NA	NA	False	NA	NA	NA	48201531	48201750	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr16_+_48201500_48201800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017318	chr16	-	748	2	Antisense	novelGene_ENSMUSG00000022652.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	705	junction_1	0	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGCTGTGAAGACTTCT	NA	False	NA	1	True	AATAAA	-37	NA	48422152	48420460	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Antisense_chr16_-_48421063_48422006
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017346	chr16	+	1921	9	NIC	ENSMUSG00000055447.20	novel	5250	10	NA	NA	5	669	combination_of_known_junctions	FALSE	canonical	3	49	junction_8	11.8532695911297	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACAGTGTTTCTTCTCAT	NA	False	NA	NA	False	AAGAAA	-6	NA	49676023	49732123	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49731231
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017358	chr16	+	655	6	FSM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	22	0	22	0	multi-exon	FALSE	canonical	3	9815	junction_1	1495.09793659145	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786659	55791798	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017360	chr16	+	632	5	FSM	ENSMUSG00000098274.8	ENSMUST00000137811.8	639	5	7	0	7	0	multi-exon	FALSE	canonical	3	12575	junction_2	609.402371180159	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786790	55791798	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017368	chr16	-	1683	1	ISM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	12508	0	7440	0	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	1322	False	NA	NA	False	AATAAA	-16	NA	55837551	55835868	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_-_55835900_55837600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017371	chr16	-	2265	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	30	0	-3	0	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850072	55835868	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017408	chr16	-	3579	18	FSM	ENSMUSG00000022749.9	ENSMUST00000023431.8	3690	18	111	0	-20	0	multi-exon	TRUE	canonical	3	134	junction_12	18.4520326427881	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCCTGGAGGATGTC	NA	False	NA	-4	True	AATAAA	-22	NA	57051756	56989224	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_56990804_56991985_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032939_57034526_57034633_57038671_57038784_57051676
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017413	chr16	-	980	9	ISM	ENSMUSG00000022748.9	ENSMUST00000114371.5	1150	10	283300	-8	283230	8	3prime_fragment	TRUE	canonical	3	200	junction_5	23.459739448681	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTCCCCTCTGCTTTG	NA	False	NA	-1	True	AATAAA	-40	NA	57143909	57122354	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017469	chr16	-	466	2	Genic_Genomic	ENSMUSG00000050299.9	novel	402	1	NA	NA	-61	59	multi-exon	FALSE	canonical	3	117	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTACTTGCAAAGCAAACT	NA	False	NA	-2	True	AATAAA	-30	NA	76200601	76200079	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr16_-_76200265_76200320
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017472	chr16	-	489	2	Genic_Genomic	ENSMUSG00000050299.9	novel	402	1	NA	NA	-61	59	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTACTTGCAAAGCAAACT	NA	False	NA	-2	True	AATAAA	-30	NA	76200601	76200079	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr16_-_76200517_76200549
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017484	chr16	-	1212	5	NIC	ENSMUSG00000022864.15	novel	6127	5	NA	NA	1	1	combination_of_known_junctions	FALSE	canonical	3	59	junction_4	108.368295640376	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCAGGGTTACTCAATCAT	3244	False	NA	-3	True	AATAAA	-14	NA	78373544	78341847	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373370
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017520	chr16	-	587	4	NNC	ENSMUSG00000022890.14	novel	809	5	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	3	545	junction_3	2933.80515144866	188	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84631859	84624758	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_-_84624884_84625312_84625438_84628216_84628391_84631696
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017524	chr16	-	503	4	NNC	ENSMUSG00000022890.14	novel	809	5	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	2773.78313660042	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84631745	84624758	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr16_-_84624884_84625312_84625463_84628216_84628396_84631696
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017575	chr16	+	647	5	FSM	ENSMUSG00000022982.11	ENSMUST00000023707.11	641	5	-2	-4	-2	4	multi-exon	FALSE	canonical	0	0	junction_1	320.427351360648	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGACTCCTTTGACTG	NA	False	NA	23	True	ATTAAA	-22	NA	90017639	90023221	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_90017818_90019667_90019765_90021243_90021314_90022032_90022151_90023037
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017582	chr16	+	234	1	Intergenic	novelGene_142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAATGGTGACCATCCAG	154	False	NA	NA	False	NA	NA	NA	90090082	90090316	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr16_+_90090100_90090300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017587	chr16	+	493	1	Genic_Genomic	ENSMUSG00000053414.9	novel	NA	NA	NA	NA	37168	4	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTTTGTTTATTGATG	NA	False	NA	13	True	AATACA	-19	NA	90295952	90296445	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr16_+_90296000_90296400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017593	chr16	-	1956	4	NIC	ENSMUSG00000022978.12	novel	1333	5	NA	NA	41	-11	intron_retention	FALSE	canonical	3	279	junction_3	14.0554457615387	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAACGTTCATTTGTTTG	NA	False	NA	-11	True	AATAAA	-14	NA	90524251	90516210	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr16_-_90517639_90518523_90518647_90523180_90523248_90523913
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017600	chr16	+	206	1	Intergenic	novelGene_143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATAGAAAAGTGAGGCTGG	NA	False	NA	NA	False	NA	NA	NA	90781690	90781896	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr16_+_90781700_90781900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017617	chr16	-	3312	22	FSM	ENSMUSG00000022962.16	ENSMUST00000023684.14	3518	22	-3	209	-3	-2	multi-exon	FALSE	canonical	3	1247	junction_21	231.829967404665	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	91443843	91418282	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017626	chr16	-	1882	11	FSM	ENSMUSG00000022962.16	ENSMUST00000231380.2	1852	11	-29	-1	-2	1	multi-exon	FALSE	canonical	3	460	junction_10	453.295984981116	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTTGATTTTTTTTTTT	NA	False	NA	-1	True	AATAAA	-23	NA	91443842	91430291	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017628	chr16	-	1886	11	FSM	ENSMUSG00000022962.16	ENSMUST00000120450.2	1865	11	-20	-1	-3	1	multi-exon	FALSE	canonical	3	1247	junction_10	242.657701299588	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTTGATTTTTTTTTTT	NA	False	NA	-1	True	AATAAA	-23	NA	91443843	91430291	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017632	chr16	-	585	4	ISM	ENSMUSG00000022962.16	ENSMUST00000120450.2	1865	11	4	7731	0	19	5prime_fragment	FALSE	canonical	3	1247	junction_3	399.201703403179	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCAGGCAGCCCTTGGG	NA	False	NA	NA	False	TATAAA	-36	NA	91443819	91438023	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_-_91438275_91438481_91438578_91439844_91440035_91443771
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017637	chr16	+	444	3	ISM	ENSMUSG00000022961.19	ENSMUST00000114036.9	7945	5	-32	9283	-31	-9283	5prime_fragment	FALSE	canonical	3	478	junction_2	6	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATAAAAGACAACCAGAAGA	NA	False	NA	NA	False	NA	NA	NA	91444735	91451638	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_+_91444873_91448517_91448685_91451498
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017662	chr16	-	809	7	FSM	ENSMUSG00000022956.12	ENSMUST00000023677.10	838	7	29	0	29	0	multi-exon	FALSE	canonical	3	5653	junction_6	394.832348387684	996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGAGGAGCCTTGTCCTTT	840	False	NA	-1	True	AATAAA	-20	NA	91728546	91722101	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728407
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017665	chr16	-	153	1	ISM	ENSMUSG00000022956.12	ENSMUST00000023677.10	838	7	6316	5	1313	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGCGTGAGGAGCCTTGT	7127	False	NA	-6	True	AATAAA	-15	NA	91722259	91722106	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_-_91722100_91722300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017673	chr16	+	520	4	FSM	ENSMUSG00000051989.12	ENSMUST00000063641.11	517	4	-3	0	-3	0	multi-exon	FALSE	canonical	3	229	junction_1	48.3482735529983	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTCTGCATTCTCTCT	NA	False	NA	26	True	AATAAA	-16	NA	92098170	92109929	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_92098232_92102175_92102286_92107688_92107858_92109749
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017694	chr16	+	452	1	ISM	ENSMUSG00000051483.10	ENSMUST00000231450.2	2143	5	4034	6	1998	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGTTTACAAATGTTTT	NA	False	NA	9	True	AATAAA	-21	NA	93406774	93407226	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_+_93406800_93407200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017723	chr16	+	1521	4	FSM	ENSMUSG00000022941.9	ENSMUST00000023660.9	1531	4	10	0	10	0	multi-exon	FALSE	canonical	3	15	junction_3	1.63299316185545	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGACAATCATCTTTTT	NA	False	NA	7	True	AATAAA	-15	NA	94129288	94137794	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_94129457_94130204_94130281_94134114_94134183_94136585
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017725	chr16	-	106	1	ISM	ENSMUSG00000022940.18	ENSMUST00000113917.8	805	4	11418	3	6646	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAATTAAATGAAAATAAAT	NA	False	NA	25	True	NA	NA	NA	94159730	94159624	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_-_94159600_94159700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017736	chr16	-	1148	4	FSM	ENSMUSG00000022940.18	ENSMUST00000138514.2	695	4	-199	-254	4	0	multi-exon	FALSE	canonical	3	395	junction_3	26.0298973404728	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAACCTTGAGTAGATCTA	NA	False	NA	NA	False	AATAAA	-23	NA	94171567	94165310	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017749	chr16	-	230	1	Intergenic	novelGene_144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCTGTAGCTTTGTTA	7193	False	NA	NA	False	AAGAAA	-30	NA	95761928	95761698	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr16_-_95761700_95761900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017759	chr16	-	665	1	ISM	ENSMUSG00000040681.17	ENSMUST00000050884.16	2174	6	5477	970	3087	646	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	-11	True	AATAAA	-19	NA	95923452	95922787	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_-_95922800_95923500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017761	chr16	-	1302	5	ISM	ENSMUSG00000040681.17	ENSMUST00000050884.16	2174	6	30	970	30	646	intron_retention	FALSE	canonical	3	5886	junction_4	422.437273450154	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	-11	True	AATAAA	-19	NA	95928899	95922787	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928631
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017777	chr16	+	2497	5	FSM	ENSMUSG00000023147.18	ENSMUST00000023913.11	2495	5	-7	5	-7	1	multi-exon	FALSE	canonical	3	306	junction_2	29.2350389088163	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGTACTGTGGAAAGCGT	NA	False	NA	25	True	AATAAA	-19	NA	95946599	95959047	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280_95955396_95957078
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017785	chr16	-	3583	8	FSM	ENSMUSG00000005251.16	ENSMUST00000019386.10	3591	8	8	0	8	0	multi-exon	FALSE	canonical	3	41	junction_1	9.512612465478	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGCAGACTATTATTTCTT	NA	False	NA	2	True	AATAAA	-22	NA	97564979	97543132	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr16_-_97545445_97547059_97547325_97548492_97548597_97549222_97549382_97551292_97551343_97552693_97552843_97556267_97556560_97564727
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017803	chr17	-	1568	4	FSM	ENSMUSG00000004945.16	ENSMUST00000005053.14	948	4	-21	-599	-5	599	multi-exon	FALSE	canonical	3	675	junction_1	16.0485374896143	639	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTTTTATCAATTATTT	3447	False	NA	NA	False	AGTAAA	-27	NA	5490539	5460545	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_5461743_5483716_5483855_5489806_5489908_5490407
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017843	chr17	+	1046	6	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	-9120	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	3964.15931062312	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6688390	6703695	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_+_6688509_6694226_6694511_6699278_6699321_6702406_6702531_6702868_6702947_6703295
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017849	chr17	+	1397	3	ISM	ENSMUSG00000096255.3	ENSMUST00000179569.3	771	5	61	0	61	0	intron_retention	FALSE	canonical	3	3024	junction_1	1255.5	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6697571	6703695	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_6697638_6699278_6699321_6702406
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017866	chr17	+	841	5	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-23	351	at_least_one_novel_splicesite	TRUE	canonical	2	11	junction_2	3873.29685152068	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869167	6875299	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_+_6869236_6870885_6870928_6873713_6873967_6874472_6874551_6874899
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017869	chr17	+	932	6	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-23	351	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	4194.75856754593	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869167	6875299	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_+_6869236_6870885_6870928_6873123_6873344_6874010_6874135_6874472_6874551_6874899
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017878	chr17	+	627	4	NIC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-16	351	combination_of_known_splicesites	FALSE	canonical	3	27	junction_3	3491.09352495747	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869174	6875299	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_+_6869236_6870885_6870928_6874010_6874135_6874899
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017904	chr17	-	207	1	ISM	ENSMUSG00000052031.9	ENSMUST00000063683.8	2312	4	5939	0	5939	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACACACTGTTCCATTCA	NA	False	NA	-19	True	AATAAA	-19	NA	7222616	7222409	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_7222400_7222600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017922	chr17	+	956	4	NIC	ENSMUSG00000023861.18	novel	958	5	NA	NA	4	6	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	472.094858641307	330	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGACTATATATCTTGCT	2125	False	NA	10	True	AATAAA	-24	NA	8502597	8516499	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_+_8502794_8515366_8515464_8515655_8515789_8515969
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017936	chr17	+	207	1	Intergenic	novelGene_145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCATTGAAATGTAAGAATG	NA	False	NA	NA	False	AATAAA	-4	NA	8598526	8598733	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr17_+_8598500_8598700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017951	chr17	+	202	1	Intergenic	novelGene_146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGATATTTCAACCCAAC	3779	False	NA	NA	False	NA	NA	NA	12913766	12913968	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr17_+_12913800_12914000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017962	chr17	-	1009	4	NIC	ENSMUSG00000057388.10	novel	1219	4	NA	NA	8	-3	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	479.798800424604	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAACCCTTACTGTGTT	NA	False	NA	-12	True	ATTAAA	-15	NA	13134982	13130238	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_13130637_13132656_13132889_13134524_13134712_13134790
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000017988	chr17	-	864	1	ISM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	16844	150	12442	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTTCTTGTCAGTGAG	NA	False	NA	-2	True	NA	NA	NA	13162790	13161926	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_13161900_13162800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018008	chr17	+	1110	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	-29	4780	-29	-262	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTGTGTGAATTGCTCT	NA	False	NA	46	True	ATTAAA	-34	NA	13226674	13234241	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018022	chr17	-	358	1	ISM	ENSMUSG00000048826.8	ENSMUST00000053218.7	3250	4	8507	178	8507	-178	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACTGTCTTGTCTCTTCC	NA	False	NA	-3	True	AATAAA	-25	NA	14415849	14415491	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_14415500_14415800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018065	chr17	+	1864	9	FSM	ENSMUSG00000014767.18	ENSMUST00000014911.12	1891	9	27	0	3	0	multi-exon	TRUE	canonical	3	123	junction_2	77.8728932299295	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720176	15737689	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_15720287_15721415_15721465_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018070	chr17	-	610	5	ISM	ENSMUSG00000014771.14	ENSMUST00000054450.7	1120	6	888	0	573	0	3prime_fragment	FALSE	canonical	3	811	junction_3	60.3298226418742	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCAGTACCTCATAATT	NA	False	NA	-14	True	NA	NA	NA	15746675	15741836	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_15742056_15742177_15742292_15743064_15743169_15745530_15745663_15746634
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018098	chr17	+	1606	8	FSM	ENSMUSG00000116564.2	ENSMUST00000232396.2	1596	8	-7	-3	-7	3	multi-exon	FALSE	canonical	3	346	junction_3	41.8120185826896	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTTGTCTTTTGAATTA	NA	False	NA	NA	False	AATGAA	-23	NA	17594826	17608019	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018175	chr17	+	1519	8	NNC	ENSMUSG00000023908.9	novel	2040	8	NA	NA	-8	0	at_least_one_novel_splicesite	TRUE	canonical	3	98	junction_3	138.628412436607	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTCTTGTCCCTTTATT	3063	False	NA	34	True	AAAAAG	-45	NA	23945434	23955709	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_+_23945616_23951310_23951799_23952796_23952890_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018186	chr17	-	576	4	FSM	ENSMUSG00000055839.7	ENSMUST00000069579.7	537	4	-35	-4	-35	4	multi-exon	FALSE	canonical	3	7596	junction_3	2024.23060829431	2644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCATTTTTATTTGACA	NA	False	NA	1	True	AGTAAA	-22	NA	24048145	24043707	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_24043954_24046441_24046548_24047817_24047953_24048056
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018191	chr17	-	513	4	FSM	ENSMUSG00000055839.7	ENSMUST00000233519.2	414	4	-29	-70	-7	1	multi-exon	FALSE	canonical	3	315	junction_3	5439.43761390418	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATTTCTCATTTTTATT	NA	False	NA	-4	True	AGTAAA	-17	NA	24048117	24043712	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_24043954_24046441_24046548_24047817_24047923_24048056
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018192	chr17	-	550	3	FSM	ENSMUSG00000055839.7	ENSMUST00000232702.2	581	3	37	-6	37	1	multi-exon	FALSE	canonical	3	11428	junction_1	404.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATTTCTCATTTTTATT	NA	False	NA	-4	True	AGTAAA	-17	NA	24048020	24043712	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_24043954_24046441_24046548_24047817
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018212	chr17	-	196	1	Intergenic	novelGene_147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTGACCATTCTATCT	NA	False	NA	NA	False	NA	NA	NA	24337814	24337618	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr17_-_24337600_24337800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018229	chr17	-	3108	17	FSM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	-5	1030	-5	-1030	multi-exon	FALSE	canonical	3	665	junction_16	77.1289504660863	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGTGCTTCAACTGAAA	8670	False	NA	-2	True	AATAAA	-21	NA	24470388	24442201	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018231	chr17	-	3134	17	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-10	-1032	combination_of_known_junctions	FALSE	canonical	3	43	junction_16	200.408917902872	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTGTGCTTCAACTGA	8756	False	NA	-4	True	AATAAA	-19	NA	24470302	24442203	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470154
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018238	chr17	+	1651	7	FSM	ENSMUSG00000034681.18	ENSMUST00000115371.9	1646	7	2	-7	2	1	multi-exon	FALSE	canonical	3	629	junction_1	362.779738807019	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGTTTTACTGTCTGT	886	False	NA	NA	False	AATAAA	-25	NA	24633621	24644876	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_24633709_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018245	chr17	+	1745	8	FSM	ENSMUSG00000034681.18	ENSMUST00000234977.2	1769	8	21	3	-3	0	multi-exon	FALSE	canonical	3	75	junction_2	570.995335768505	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGCTGGTTTTACTGT	910	False	NA	NA	False	AATAAA	-21	NA	24633645	24644872	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_24633709_24634014_24634137_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018262	chr17	+	332	1	ISM	ENSMUSG00000024132.7	ENSMUST00000234304.2	1137	7	12348	0	1605	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTAGCTCTTGTGTTC	NA	False	NA	11	True	TATAAA	-24	NA	24657962	24658294	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_24658000_24658300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018273	chr17	+	1390	1	FSM	ENSMUSG00000043445.8	ENSMUST00000234216.2	2428	1	1286	-248	1286	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGCCTTCCTCTAATTT	NA	False	NA	25	True	ATTAAA	-22	NA	24690694	24692084	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_24690700_24692100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018285	chr17	-	2660	21	NIC	ENSMUSG00000052752.16	novel	2667	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_17	98.1200667549712	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746820	24727823	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733841_24735478_24735571_24737715_24737774_24738104_24738221_24746739
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018291	chr17	+	299	2	FSM	ENSMUSG00000093565.2	ENSMUST00000176921.2	298	2	-1	0	-1	0	multi-exon	TRUE	canonical	3	77	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTTTCAGACGTTGTG	4763	False	NA	14	True	AATAAA	-17	NA	24747220	24747718	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_24747411_24747609
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018293	chr17	+	498	1	FSM	ENSMUSG00000093565.2	ENSMUST00000176215.2	477	1	-20	-1	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTTTCAGACGTTGTG	4763	False	NA	14	True	AATAAA	-17	NA	24747220	24747718	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_24747200_24747700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018334	chr17	-	372	1	FSM	ENSMUSG00000089255.3	ENSMUST00000158630.3	128	1	-99	-145	-99	145	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATCGTATGTTGGTGTTT	4364	False	NA	-8	True	AATAAA	-15	NA	24938876	24938504	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_24938500_24938900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018445	chr17	+	1202	6	FSM	ENSMUSG00000015126.10	ENSMUST00000063574.7	1192	6	-9	-1	-9	1	multi-exon	FALSE	canonical	3	375	junction_2	34.9685573050991	291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTGCTTTGTACGTGGC	4594	False	NA	29	True	AATAAA	-19	NA	25459134	25461773	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_25459339_25459417_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461427
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018472	chr17	-	1155	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	-2	-263	-2	4	multi-exon	FALSE	canonical	3	206	junction_6	1745.07048568246	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTGCATTATCATCATT	3818	False	NA	NA	False	AATAAA	-18	NA	25493286	25480885	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018512	chr17	+	2025	11	FSM	ENSMUSG00000002280.12	ENSMUST00000002350.11	2555	11	17	513	-11	23	multi-exon	FALSE	canonical	3	237	junction_8	20.6145579627602	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCCTTTCAAAGTTTTA	6937	False	NA	34	True	NA	NA	NA	25992766	26001793	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000820_26000989
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018519	chr17	-	1379	3	FSM	ENSMUSG00000057411.10	ENSMUST00000236842.2	1886	3	507	0	1	0	multi-exon	FALSE	canonical	3	227	junction_2	3.5	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTTTGTTCCAGGAAT	8371	False	NA	-1	True	AATAAA	-23	NA	26011368	26009473	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_26009753_26009906_26009958_26010319
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018545	chr17	-	1372	6	NNC	ENSMUSG00000039615.10	novel	1408	6	NA	NA	8	0	intron_retention	FALSE	canonical	3	73	junction_4	597.282043928997	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATGTGCTGGTGCAGT	6773	False	NA	-17	True	AATAAA	-17	NA	26051907	26049607	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_-_26049985_26050075_26050193_26050282_26050606_26050769_26050884_26051019_26051219_26051665
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018562	chr17	-	2455	19	FSM	ENSMUSG00000025733.18	ENSMUST00000043897.16	3189	19	355	379	29	2	multi-exon	FALSE	canonical	3	133	junction_18	11.3871272350258	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGATTTTGATCTCTCA	6042	False	NA	0	True	ATTAAA	-21	NA	26063470	26057809	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_26058469_26058662_26058866_26058958_26059082_26059228_26059310_26059411_26059543_26059624_26059726_26059809_26059953_26060025_26060111_26060335_26060457_26060532_26060642_26060730_26060830_26060963_26061066_26061153_26061263_26061339_26061393_26062080_26062135_26062914_26062959_26063062_26063145_26063228_26063288_26063373
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018570	chr17	+	815	6	FSM	ENSMUSG00000025731.17	ENSMUST00000026827.16	1243	6	424	4	-2	-4	multi-exon	FALSE	canonical	3	287	junction_5	67.7542618585724	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTGCTGGGAATACCTG	7192	False	NA	35	True	AATAAA	-36	NA	26094471	26096139	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634_26095714_26095923
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018585	chr17	-	929	6	FSM	ENSMUSG00000024177.10	ENSMUST00000236547.2	926	6	-1	-2	-1	0	multi-exon	FALSE	canonical	3	25	junction_1	147.011019995101	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26314448	26310707	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_26311127_26311480_26311532_26312590_26312704_26312832_26312935_26313110_26313245_26314338
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018587	chr17	-	912	5	FSM	ENSMUSG00000024177.10	ENSMUST00000025007.7	1006	5	94	0	-19	0	multi-exon	FALSE	canonical	3	296	junction_2	23.847169643377	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26314482	26310707	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_26311127_26312590_26312704_26312832_26312935_26313110_26313245_26314338
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018601	chr17	+	97	1	ISM	ENSMUSG00000024180.15	ENSMUST00000025010.14	3464	13	9842	0	4993	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGTCTTTTTTTTTTT	NA	False	NA	20	True	NA	NA	NA	26342131	26342228	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_26342100_26342200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018603	chr17	+	1069	5	FSM	ENSMUSG00000024181.10	ENSMUST00000025014.10	1068	5	-1	0	-1	0	multi-exon	FALSE	canonical	0	0	junction_2	613.108677152754	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342472	26345587	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345244
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018610	chr17	+	1573	4	NIC	ENSMUSG00000024181.10	novel	1068	5	NA	NA	-1	0	intron_retention	FALSE	canonical	3	1395	junction_2	20.2703943940144	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342516	26345587	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_+_26342824_26343529_26344366_26344451_26344539_26345244
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018617	chr17	+	564	1	ISM	ENSMUSG00000024182.18	ENSMUST00000074370.11	3777	11	56559	1	7094	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGATATGTGATATACTA	NA	False	NA	10	True	AATAAA	-18	NA	26414220	26414784	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_26414200_26414800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018638	chr17	+	93	1	Intergenic	novelGene_148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATGACAGTACCATATGT	NA	False	NA	NA	False	AATAAA	-33	NA	26489722	26489815	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr17_+_26489700_26489800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018647	chr17	+	811	4	FSM	ENSMUSG00000015575.16	ENSMUST00000015719.16	823	4	12	0	12	0	multi-exon	FALSE	canonical	3	1134	junction_3	173.829418300432	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	37	True	AATAAA	-25	NA	26895355	26918621	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_26895553_26901651_26901700_26914328_26914459_26918185
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018648	chr17	+	795	4	NNC	ENSMUSG00000015575.16	novel	823	4	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	381	junction_3	528.401993435553	160	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	37	True	AATAAA	-25	NA	26895355	26918621	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_+_26895553_26901651_26901700_26914328_26914443_26918185
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018659	chr17	+	1082	6	FSM	ENSMUSG00000024191.16	ENSMUST00000015725.16	1098	6	16	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	9.09945053286186	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGTGGTAAATGCTTAAC	2010	False	NA	15	True	AATAAA	-15	NA	27000055	27011495	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_27000151_27002418_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018664	chr17	-	878	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236326.2	937	6	64	-5	-17	1	multi-exon	FALSE	canonical	3	300	junction_5	250.477144665936	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTCTCTGTGACATGG	9340	False	NA	-16	True	AATAAA	-19	NA	27158455	27156944	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158343_27158424
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018677	chr17	-	815	5	FSM	ENSMUSG00000024194.17	ENSMUST00000237609.2	785	5	-29	-1	-4	0	multi-exon	FALSE	canonical	3	511	junction_4	189.078026221981	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9369	False	NA	-17	True	AATAAA	-18	NA	27158426	27156945	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158290
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018759	chr17	-	1257	1	ISM	ENSMUSG00000024213.15	ENSMUST00000025050.13	2223	5	42852	5	2676	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTGCTCTTTGTTCCAT	NA	False	NA	-23	True	AATAAA	-18	NA	27799617	27798360	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_27798400_27799600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018768	chr17	-	576	6	NNC	ENSMUSG00000052146.17	novel	887	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	2485.05568549278	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	27854216	27849395	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_-_27849477_27850173_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27854177
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018775	chr17	-	444	5	NNC	ENSMUSG00000052146.17	novel	522	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2357.90122513646	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	27854219	27849395	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_-_27849481_27850173_27850224_27853100_27853218_27853299_27853450_27854177
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018778	chr17	-	1272	5	FSM	ENSMUSG00000052146.17	ENSMUST00000155071.9	712	5	-13	-547	-1	0	multi-exon	FALSE	canonical	3	4719	junction_4	780.063899626178	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	27854215	27849395	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27854177
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018790	chr17	+	718	6	NNC	ENSMUSG00000024217.11	novel	984	7	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_1	811.755529700907	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28059139	28070942	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_+_28059180_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018796	chr17	-	668	1	NIC	ENSMUSG00000024218.14	novel	2207	6	NA	NA	1480	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGGTTTCTCTGTGTTGCC	NA	False	NA	-5	True	AATAAA	-23	NA	28120765	28120097	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_28120100_28120800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018806	chr17	+	771	6	FSM	ENSMUSG00000037805.16	ENSMUST00000042334.16	830	6	60	-1	-37	1	multi-exon	FALSE	canonical	3	5482	junction_4	1458.64553610533	2281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTGCCTGTGATTGG	NA	False	NA	2	True	AATAAA	-21	NA	28547504	28550008	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018814	chr17	+	798	5	NIC	ENSMUSG00000037805.16	novel	830	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	5482	junction_3	1374.50982171827	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547556	28550006	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_+_28547593_28547784_28548022_28548347_28548497_28549498_28549672_28549803
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018816	chr17	+	875	5	NIC	ENSMUSG00000037805.16	novel	949	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	3461.09708040673	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547556	28550006	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_+_28547593_28547940_28548255_28548347_28548497_28549498_28549672_28549803
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018818	chr17	+	2045	4	NIC	ENSMUSG00000037805.16	novel	949	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	5715	junction_1	1410.70297684838	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547556	28550006	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_+_28547593_28547784_28547860_28547940_28549672_28549803
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018822	chr17	+	714	6	FSM	ENSMUSG00000037805.16	ENSMUST00000233427.2	729	6	15	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	3247.70076207769	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547556	28550006	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_28547593_28547787_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018824	chr17	+	1124	4	NIC	ENSMUSG00000037805.16	novel	949	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	5482	junction_2	1331.5841025719	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547556	28550006	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_+_28547593_28547784_28548497_28549498_28549672_28549803
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018825	chr17	+	1031	5	NIC	ENSMUSG00000037805.16	novel	949	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	728	junction_2	2767.37776378651	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547556	28550006	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_+_28547593_28547784_28548255_28548347_28548497_28549498_28549672_28549803
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018836	chr17	+	909	5	FSM	ENSMUSG00000037805.16	ENSMUST00000152665.3	901	5	-3	-5	0	0	multi-exon	FALSE	canonical	3	5482	junction_3	1346.05653205948	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547556	28550006	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018842	chr17	+	2450	1	NIC	ENSMUSG00000037805.16	novel	830	6	NA	NA	0	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547556	28550006	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_+_28547600_28550000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018867	chr17	-	997	3	FSM	ENSMUSG00000045378.6	ENSMUST00000051526.6	1019	3	22	0	22	0	multi-exon	FALSE	canonical	3	18	junction_2	5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTCTGTGTGTCTCTTTT	6235	False	NA	2	True	AATAAA	-18	NA	29161216	29152957	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_29153781_29160215_29160344_29161170
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018889	chr17	+	2555	7	FSM	ENSMUSG00000071172.14	ENSMUST00000037776.16	2594	7	39	0	-2	0	multi-exon	FALSE	canonical	3	61	junction_4	890.897051042125	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTGTGTCTAGAAGGT	NA	False	NA	15	True	AATAAA	-17	NA	29251644	29261871	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29258427_29258884_29259748_29259788_29260180_29260268_29260357
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018901	chr17	+	1198	3	FSM	ENSMUSG00000117007.2	ENSMUST00000233006.2	1125	3	-63	-10	-63	0	multi-exon	FALSE	canonical	1	3	junction_1	3.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCAGACTGGTAAGCAAA	1546	False	NA	NA	False	NA	NA	NA	29275770	29278729	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_29275960_29276834_29276933_29277818
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018908	chr17	+	1915	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	3	-5	3	0	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTTGTCATTAGAGCAAA	4650	False	NA	29	True	NA	NA	NA	29312745	29319701	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_29312836_29317370_29317812_29318317
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018909	chr17	+	2416	2	ISM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	3	0	3	0	intron_retention	FALSE	canonical	3	1306	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4650	False	NA	24	True	NA	NA	NA	29312745	29319696	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_29312836_29317370
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018918	chr17	-	2454	14	NNC	ENSMUSG00000024008.17	novel	5708	21	NA	NA	-5014	6	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_8	10.3443664455472	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCCCCCTCTCCTTTGAA	3110	False	NA	-3	True	AGTAAA	-20	NA	29408091	29376883	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29408003
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018922	chr17	-	881	1	ISM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	12478	25	287	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGGTCTAGTATTGTT	NA	False	NA	-24	True	AATAAA	-23	NA	29470682	29469801	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_29469800_29470700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018949	chr17	+	1121	1	ISM	ENSMUSG00000024014.9	ENSMUST00000024811.9	2698	6	4238	1	1584	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAGTTTTCCATTCAT	NA	False	NA	16	True	AATAAA	-17	NA	29713964	29715085	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_29714000_29715100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000018975	chr17	-	1305	6	FSM	ENSMUSG00000062202.15	ENSMUST00000236910.2	1375	6	-9	79	-6	-79	multi-exon	FALSE	canonical	3	100	junction_1	4.24264068711928	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGCTCACCGTAACTCA	NA	False	NA	NA	False	NA	NA	NA	30795242	30732528	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019027	chr17	-	2432	16	FSM	ENSMUSG00000024039.16	ENSMUST00000078509.12	2403	16	-26	-3	8	2	multi-exon	FALSE	canonical	3	223	junction_1	29.2615789047686	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTGTCGACCTTATTTCC	1919	False	NA	-14	True	NA	NA	NA	31856165	31831611	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019038	chr17	-	232	1	ISM	ENSMUSG00000061613.14	ENSMUST00000166526.9	923	8	11457	0	2000	0	mono-exon	FALSE	NA	NA	NA	NA	NA	318	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	4746	False	NA	-17	True	AATAAA	-19	NA	31866286	31866054	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_31866100_31866300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019040	chr17	-	889	8	FSM	ENSMUSG00000061613.14	ENSMUST00000166526.9	923	8	34	0	3	0	multi-exon	FALSE	canonical	3	1007	junction_5	2353.82216310201	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877709	31866054	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31871475_31871543_31873952_31874041_31877626
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019043	chr17	-	956	9	FSM	ENSMUSG00000061613.14	ENSMUST00000237323.2	975	9	20	-1	3	0	multi-exon	FALSE	canonical	3	177	junction_6	2395.95355495469	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877709	31866054	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31871475_31871543_31873952_31874041_31877626
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019078	chr17	+	1920	1	ISM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	24846	0	1778	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTTGATGTTGCCTC	NA	False	NA	22	True	ATTAAA	-24	NA	32279919	32281839	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_32279900_32281800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019097	chr17	-	342	1	ISM	ENSMUSG00000002625.11	ENSMUST00000236039.2	3513	13	28810	0	11134	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32540739	32540397	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_32540400_32540700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019137	chr17	+	1327	7	ISM	ENSMUSG00000024300.18	ENSMUST00000173426.2	3667	18	18477	2	2939	0	3prime_fragment	FALSE	canonical	3	43	junction_3	8.43932593411478	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAGAAGTAAATTACTGAG	2203	False	NA	NA	False	AATAAA	-17	NA	33820053	33826736	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_33820171_33820632_33820780_33820915_33821065_33821499_33821584_33823230_33823427_33823523_33823694_33826272
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019143	chr17	+	1209	7	FSM	ENSMUSG00000073423.11	ENSMUST00000166627.8	1211	7	2	0	2	0	multi-exon	FALSE	canonical	3	63	junction_2	162.952702749397	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTACCTATGCCTTC	4919	False	NA	29	True	AATACA	-19	NA	33848065	33850690	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_33848191_33848595_33848673_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019151	chr17	-	2529	15	NIC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	-42	2	intron_retention	FALSE	canonical	0	0	junction_12	499.910221531663	472	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTTTTTTGTTTTTGTA	5698	False	NA	0	True	AATAAA	-21	NA	33904435	33865204	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889054_33889108_33896247_33896415_33904240
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019196	chr17	-	290	4	NNC	ENSMUSG00000067288.14	novel	382	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	427	junction_1	9234.517457164	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043469	34042023	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_-_34042091_34042191_34042305_34043272_34043321_34043407
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019201	chr17	-	391	3	ISM	ENSMUSG00000067288.14	ENSMUST00000173019.8	437	4	-3	4023	-1	0	5prime_fragment	FALSE	canonical	3	16929	junction_2	2573.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043469	34042023	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_34042305_34043272_34043321_34043407
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019204	chr17	-	1446	1	FSM	ENSMUSG00000067288.14	ENSMUST00000234017.2	1443	1	-1	-2	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043469	34042023	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_34042000_34043500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019231	chr17	-	90	1	ISM	ENSMUSG00000079553.12	ENSMUST00000173492.9	2357	11	14906	7	7471	2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTCTTGTTTGTTTTG	NA	False	NA	-14	True	AATAAA	-19	NA	34094729	34094639	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_34094600_34094700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019245	chr17	+	2597	2	FSM	ENSMUSG00000051390.11	ENSMUST00000053429.11	2612	2	15	0	15	0	multi-exon	FALSE	canonical	3	107	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTCCCAACACCCCT	NA	False	NA	11	True	ATTAAA	-20	NA	34135159	34138299	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_34135248_34135790
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019258	chr17	-	430	4	FSM	ENSMUSG00000024309.16	ENSMUST00000174426.2	396	4	-7	-27	-6	0	multi-exon	FALSE	canonical	3	39	junction_3	515.769974568767	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACTTTACAGCCAGTCT	NA	False	NA	-15	True	AATAAA	-17	NA	34159311	34157892	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34159270
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019270	chr17	-	636	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174175.8	632	4	-3	-1	0	0	multi-exon	FALSE	canonical	3	20050	junction_3	1274.65978031613	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_34171093_34171194_34171566_34174051_34174151_34174591
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019274	chr17	-	950	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174620.3	974	4	27	-3	27	0	multi-exon	FALSE	canonical	3	21077	junction_1	1022.38979302851	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174600	34170972	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019285	chr17	-	648	4	NIC	ENSMUSG00000008668.16	novel	715	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	20050	junction_3	1505.03444035898	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_34171287_34171376_34171566_34174051_34174151_34174591
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019300	chr17	-	1717	7	FSM	ENSMUSG00000024325.9	ENSMUST00000025183.9	2034	7	25	292	-3	0	multi-exon	FALSE	canonical	3	63	junction_3	8.5764535535124	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCAGTTCTCTGTGTGTG	NA	False	NA	2	True	NA	NA	NA	34243629	34240057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_34240458_34240656_34240931_34241269_34241660_34241952_34242169_34242266_34242428_34243262_34243393_34243483
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019305	chr17	-	2395	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	-76	1	-14	-1	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGCCTTTGTCTTTATGT	NA	False	NA	-3	True	AATAAA	-25	NA	34250670	34247243	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019310	chr17	-	128	1	ISM	ENSMUSG00000092595.3	ENSMUST00000168978.3	3711	11	3181	2238	1153	-867	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGCCTTTGTCTTTAT	NA	False	NA	-5	True	AATAAA	-23	NA	34247373	34247245	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_34247200_34247400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019328	chr17	+	716	1	Intergenic	novelGene_149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGGAAAAGAAGAAAGATCAA	3595	False	NA	NA	False	NA	NA	NA	34438558	34439274	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr17_+_34438600_34439300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019347	chr17	-	1281	4	FSM	ENSMUSG00000015478.14	ENSMUST00000174475.8	850	4	-214	-217	71	-6	multi-exon	FALSE	canonical	3	1022	junction_3	37.7211994624891	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGAAGTCTCCCCAGTC	895	False	NA	-29	True	NA	NA	NA	34822564	34820070	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_34820963_34821058_34821172_34821264_34821284_34822307
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019359	chr17	+	1226	2	FSM	ENSMUSG00000033739.9	ENSMUST00000036720.9	1270	2	47	-3	-30	3	multi-exon	FALSE	canonical	3	34	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTCTGTGTTGTGGAA	7406	False	NA	7	True	ATTAAA	-20	NA	34863784	34865301	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_34863928_34864218
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019362	chr17	+	2562	18	FSM	ENSMUSG00000015461.16	ENSMUST00000015605.15	2566	18	4	0	4	0	multi-exon	FALSE	canonical	3	325	junction_9	22.8588265568706	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCGGCCACCTTCCTAGTG	9745	False	NA	11	True	AATAAA	-24	NA	34866123	34874048	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_34866291_34866633_34866714_34867192_34867272_34867550_34867643_34868091_34868228_34869274_34869361_34869473_34869610_34869693_34869826_34869959_34870094_34870535_34870722_34870803_34870896_34871621_34871802_34871962_34872071_34872187_34872270_34872475_34872547_34872677_34872790_34872894_34872980_34873444
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019367	chr17	+	268	1	ISM	ENSMUSG00000015461.16	ENSMUST00000015605.15	2566	18	7661	0	3180	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCGGCCACCTTCCTAGTG	NA	False	NA	11	True	AATAAA	-24	NA	34873780	34874048	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_34873800_34874000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019396	chr17	+	1027	5	ISM	ENSMUSG00000013787.16	ENSMUST00000013931.12	4026	27	12235	0	231	0	3prime_fragment	FALSE	canonical	3	414	junction_3	11.4972822875669	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	1752	False	NA	19	True	AATAAA	-20	NA	35130181	35133027	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019405	chr17	-	595	5	FSM	ENSMUSG00000092203.8	ENSMUST00000172501.8	579	5	-4	-12	-1	7	multi-exon	FALSE	canonical	3	94	junction_4	37.0497975702972	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTCTGTGTCACTTTGT	6006	False	NA	NA	False	AATAAA	-26	NA	35171448	35169206	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111_35171150_35171327
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019409	chr17	-	765	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173811.8	747	4	-12	-6	0	3	multi-exon	FALSE	canonical	3	110	junction_2	36.5908306668336	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTTTTTCTGTGTCACT	6010	False	NA	NA	False	AATAAA	-22	NA	35171444	35169210	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019413	chr17	-	2015	2	FSM	ENSMUSG00000092687.3_ENSMUSG00000092203.8	ENSMUST00000174464.2	785	2	-1227	-3	0	3	multi-exon	FALSE	canonical	3	190	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTTTTTCTGTGTCACT	6007	False	NA	NA	False	AATAAA	-22	NA	35171447	35169210	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_35169452_35169673
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019414	chr17	-	546	4	FSM	ENSMUSG00000092203.8	ENSMUST00000174714.8	520	4	-20	-6	0	3	multi-exon	FALSE	canonical	3	5	junction_2	75.5439533575579	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTTTTTCTGTGTCACT	6010	False	NA	NA	False	AATAAA	-22	NA	35171444	35169210	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_35169452_35169673_35169824_35171111_35171150_35171327
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019431	chr17	-	791	4	NIC	ENSMUSG00000092203.8	novel	579	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	94	junction_3	41.9947086613963	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6010	False	NA	NA	False	AATAAA	-16	NA	35171444	35169216	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_35169452_35169673_35169824_35170860_35171150_35171327
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019441	chr17	+	899	5	FSM	ENSMUSG00000007050.18	ENSMUST00000007266.14	873	5	-26	0	-18	0	multi-exon	FALSE	canonical	3	278	junction_1	596.250995806296	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	217	False	NA	26	True	AATAAA	-20	NA	35201078	35204867	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_35201344_35201595_35201664_35204084_35204116_35204224_35204285_35204392
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019444	chr17	+	1135	4	FSM	ENSMUSG00000007050.18	ENSMUST00000174860.8	691	4	-50	-394	-2	0	multi-exon	FALSE	canonical	3	1479	junction_1	117.83132954449	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	233	False	NA	26	True	AATAAA	-20	NA	35201094	35204867	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_35201664_35204084_35204116_35204224_35204285_35204392
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019457	chr17	-	675	5	NIC	ENSMUSG00000036185.10	novel	665	5	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_4	14.8218588577816	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246904	35244934	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419_35246561_35246772
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019584	chr17	-	1687	14	FSM	ENSMUSG00000001524.15	ENSMUST00000001565.15	1679	14	-6	-2	-6	2	multi-exon	FALSE	canonical	3	142	junction_8	17.8418429806661	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGCTTCAGACGTCTGCC	NA	False	NA	1	True	AATAAA	-19	NA	35984637	35978619	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984447
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019612	chr17	+	1470	4	FSM	ENSMUSG00000059791.15	ENSMUST00000074259.15	1466	4	-4	0	-4	0	multi-exon	FALSE	canonical	3	236	junction_1	13.2748718344933	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTTGTCTGTCCATGAC	4585	False	NA	24	True	AATAAA	-18	NA	36172205	36176294	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_36172410_36174330_36174528_36175003_36175181_36175402
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019616	chr17	-	153	1	Intergenic	novelGene_150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAACCCACTAAGAATA	NA	False	NA	NA	False	NA	NA	NA	36195309	36195156	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr17_-_36195200_36195300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019621	chr17	+	1038	7	NNC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	400.503017050642	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTTATGTCATTGCTT	7373	False	NA	52	True	AATGAA	-42	NA	36198818	36203562	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_+_36198890_36198975_36199124_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019663	chr17	-	719	1	Genic_Genomic	ENSMUSG00000038762.16	novel	NA	NA	NA	NA	654	3	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTGTGGGGTGCTTCC	3820	False	NA	-9	True	AATAAA	-21	NA	36268426	36267707	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr17_-_36267700_36268400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019675	chr17	-	934	5	FSM	ENSMUSG00000073406.11	ENSMUST00000195833.6	829	5	-26	-79	-26	5	multi-exon	FALSE	canonical	3	113	junction_4	176.893329438959	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTTTCCTGCATTGAGC	NA	False	NA	0	True	AATAAA	-27	NA	36395141	36391001	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394825_36395051
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019677	chr17	-	1210	6	FSM	ENSMUSG00000073406.11	ENSMUST00000195838.6	1105	6	-26	-79	-26	5	multi-exon	FALSE	canonical	3	113	junction_5	180.752427369593	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTTTCCTGCATTGAGC	NA	False	NA	0	True	AATAAA	-27	NA	36395141	36391001	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394825_36395051
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019690	chr17	-	543	5	FSM	ENSMUSG00000024446.14	ENSMUST00000025319.7	729	5	188	-2	-25	2	multi-exon	FALSE	canonical	3	621	junction_3	61.4262769505038	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGGTATCTCAACTGG	NA	False	NA	-14	True	AATAAA	-22	NA	36568773	36566556	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497_36568599_36568674
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019697	chr17	-	609	4	NIC	ENSMUSG00000024446.14	novel	729	5	NA	NA	-12	0	intron_retention	FALSE	canonical	3	710	junction_3	28.7672653471886	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTGGTATCTCAACT	NA	False	NA	-16	True	AATAAA	-20	NA	36568760	36566558	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_36566691_36566835_36566962_36568333_36568599_36568674
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019707	chr17	+	3191	10	FSM	ENSMUSG00000024457.17	ENSMUST00000130367.8	3187	10	-4	0	-2	0	multi-exon	FALSE	canonical	3	108	junction_1	52.5084355362939	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTGGTGCTGTCTCTT	NA	False	NA	31	True	AATAAA	-38	NA	37148030	37170290	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_37148157_37148388_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019737	chr17	+	554	1	ISM	ENSMUSG00000036214.15	ENSMUST00000209623.2	1218	3	1248	2	1248	1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTTTGCTAATGGTACCA	4822	False	NA	18	True	AATAAA	-18	NA	37275961	37276515	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_37276000_37276500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019761	chr17	+	1632	4	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1458.01973771124	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	16	True	AATAAA	-21	NA	37313445	37321504	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_+_37313632_37315688_37315796_37316941_37317087_37320310
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019788	chr17	+	103	1	Intergenic	novelGene_151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATTCTCTACAATCC	NA	False	NA	NA	False	AATAAA	-22	NA	43723334	43723437	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr17_+_43723300_43723400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019813	chr17	-	2523	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	0	1	intron_retention	TRUE	canonical	0	0	junction_8	3295.6876080721	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	-23	True	AATAAA	-20	NA	45884197	45878699	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882336_45882546_45882690_45882838_45884092
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019817	chr17	-	1408	8	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	0	-3	intron_retention	FALSE	canonical	0	0	junction_1	3529.33176307889	59	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	-27	True	AATAAA	-16	NA	45884197	45878703	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_-_45879034_45880736_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019819	chr17	-	2424	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	0	-3	intron_retention	FALSE	canonical	2	72	junction_9	3282.20513679447	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	-27	True	AATAAA	-16	NA	45884197	45878703	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882453_45882690_45882838_45884092
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019836	chr17	-	2155	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_13	684.125062098821	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	-1	True	AATAAA	-18	NA	45910544	45896125	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45910398
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019881	chr17	-	1274	3	FSM	ENSMUSG00000034509.10	ENSMUST00000171172.3	1272	3	0	-2	0	2	multi-exon	FALSE	canonical	3	95	junction_1	3.5	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGATTTAGACTTTTGG	NA	False	NA	0	True	AATAAA	-23	NA	46464479	46458310	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_46459211_46463704_46463968_46464368
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019945	chr17	+	1045	7	NNC	ENSMUSG00000002767.14	novel	1031	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_5	404.152920728446	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTACTACCTTTTCACT	NA	False	NA	28	True	AATAAA	-17	NA	46957167	46961058	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959933_46960035_46960809
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019964	chr17	-	1968	11	FSM	ENSMUSG00000063576.13	ENSMUST00000165007.9	1954	11	-11	-3	-11	0	multi-exon	FALSE	canonical	3	47	junction_10	118.520082686438	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991851	46985475	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46991627
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000019966	chr17	-	2138	12	FSM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	-38	0	-28	0	multi-exon	FALSE	canonical	3	322	junction_11	42.5343808432544	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991868	46985475	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020002	chr17	-	2630	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	-17	-7	-1	7	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	648	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGTTCGCCCAGTCCCCTG	NA	False	NA	NA	False	NA	NA	NA	47093599	47084825	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020069	chr17	+	1528	4	FSM	ENSMUSG00000034165.17	ENSMUST00000182539.8	931	4	-2	-595	-2	0	multi-exon	FALSE	canonical	3	145	junction_1	1891.51068373051	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47906990	47910614	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_47907141_47908344_47908505_47908927_47909065_47909533
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020112	chr17	+	1392	9	FSM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	0	-4	0	4	multi-exon	FALSE	canonical	3	26	junction_3	162.479181358721	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTGAGTCATTTGTAT	NA	False	NA	20	True	AATAAA	-20	NA	48037766	48045411	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_48037890_48039666_48039827_48040176_48040295_48041018_48041138_48041523_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020130	chr17	+	341	1	ISM	ENSMUSG00000023990.19	ENSMUST00000086932.10	2342	9	55046	3	2635	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGTTGTCCTGGCTCTGC	NA	False	NA	15	True	AGTAAA	-15	NA	48103000	48103341	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_48103000_48103300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020148	chr17	+	1314	6	FSM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	31	-21	31	9	multi-exon	FALSE	canonical	0	0	junction_5	371.627232586634	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGTGTTCTGGATCTTG	NA	False	NA	30	True	AATAAA	-38	NA	48717072	48724303	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020157	chr17	-	1227	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	194	-1	-118	1	multi-exon	FALSE	canonical	3	57	junction_2	11.5	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGGCCTGTTCTCTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	48739764	48726257	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_48726662_48729968_48730534_48739506
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020163	chr17	+	1819	6	ISM	ENSMUSG00000043592.16	ENSMUST00000074574.13	2838	9	7475	0	-8	0	3prime_fragment	FALSE	canonical	3	16	junction_5	4.12795348811006	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGGTACTTTTGAATGGT	NA	False	NA	NA	False	AATAAA	-26	NA	48769403	48775714	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_48769467_48770389_48770492_48770604_48770673_48771469_48771571_48771943_48772058_48774343
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020177	chr17	+	1658	4	ISM	ENSMUSG00000017831.9	ENSMUST00000017975.7	2366	6	18371	0	18318	0	3prime_fragment	FALSE	canonical	3	878	junction_2	42.9444085093999	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGAGTTTTCTCTGTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	53804632	53814708	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_53804707_53805415_53805539_53807403_53807498_53813341
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020180	chr17	-	1617	1	ISM	ENSMUSG00000023940.15	ENSMUST00000024736.14	3628	9	12931	0	12876	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTTGCCGCTTACTTTT	7222	False	NA	0	True	AATAAA	-30	NA	53983430	53981813	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_53981800_53983400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020195	chr17	+	2049	4	FSM	ENSMUSG00000003198.11	ENSMUST00000054780.10	2028	4	-17	-4	10	4	multi-exon	FALSE	canonical	3	9	junction_1	17.3781471969828	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATTTATGTGTCTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	56199102	56205932	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_56199187_56202820_56202948_56203140_56203202_56204155
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020249	chr17	-	207	1	ISM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	7173	797	6917	-797	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGATTCTCATCGTTTTC	NA	False	NA	0	True	AATAAA	-45	NA	56483747	56483540	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_56483500_56483700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020269	chr17	+	959	1	ISM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	19207	0	4502	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1363	False	NA	36	True	AATAAA	-20	NA	56629527	56630486	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_56629500_56630500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020278	chr17	-	158	1	Genic_Genomic	ENSMUSG00000049760.7	novel	NA	NA	NA	NA	1400	7	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGGATAGGAAAGGGTTT	NA	False	NA	-25	True	TTTAAA	-34	NA	56914602	56914444	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr17_-_56914400_56914600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020281	chr17	-	824	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	-62	-7	-62	7	multi-exon	FALSE	canonical	3	1891	junction_3	98.6610358753647	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGGATAGGAAAGGGTTT	NA	False	NA	-25	True	TTTAAA	-34	NA	56916833	56914444	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020299	chr17	+	831	1	Genic_Genomic	ENSMUSG00000057863.7	novel	NA	NA	NA	NA	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	2	True	AATAAA	-15	NA	56920415	56921246	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr17_+_56920400_56921200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020303	chr17	+	496	3	NIC	ENSMUSG00000057863.7	novel	383	4	NA	NA	27	3	intron_retention	FALSE	canonical	3	9970	junction_2	629.5	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	2	True	AATAAA	-15	NA	56920442	56921246	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_+_56920681_56920906_56921042_56921123
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020306	chr17	-	2019	13	ISM	ENSMUSG00000041168.11	ENSMUST00000047226.10	2951	18	6561	-7	6549	7	3prime_fragment	FALSE	canonical	3	665	junction_11	69.6818165345562	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGTCTCAGTGTCGCC	8132	False	NA	-5	True	AATAAA	-24	NA	56927326	56921289	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_56921564_56921635_56921801_56921873_56922092_56922249_56922416_56922503_56922645_56922925_56923043_56923129_56923253_56923358_56923447_56924753_56924933_56925317_56925457_56926171_56926393_56926985_56927070_56927222
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020321	chr17	+	587	4	FSM	ENSMUSG00000002379.8	ENSMUST00000002452.8	545	4	-24	-18	-24	14	multi-exon	FALSE	canonical	3	2627	junction_1	54.2975342186201	1692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGCTGCATGAGATGGC	NA	False	NA	36	True	AATAAA	-36	NA	57024742	57029155	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_57024943_57028034_57028128_57028318_57028442_57028984
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020326	chr17	+	519	4	FSM	ENSMUSG00000002379.8	ENSMUST00000233832.2	493	4	-16	-10	0	10	multi-exon	FALSE	canonical	3	181	junction_2	1185.6477835625	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGGCTTGCTGCATGAGA	NA	False	NA	32	True	AATAAA	-32	NA	57024766	57029151	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_57024943_57028034_57028128_57028358_57028442_57028984
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020335	chr17	+	696	4	NNC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	8484	2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	29.6797723860694	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTCGCACCCCGAGGTAA	NA	False	NA	18	True	ATTAAA	-18	NA	57190986	57195906	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_+_57191026_57192083_57192224_57193440_57193688_57195636
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020367	chr17	+	797	5	FSM	ENSMUSG00000044279.16	ENSMUST00000169543.8	778	5	-18	-1	-18	0	multi-exon	FALSE	canonical	3	51	junction_4	66.6520817379322	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTAGCTGTAAGCTCTT	1560	False	NA	NA	False	AATAAA	-31	NA	57369264	57372918	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089_57372234_57372608
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020382	chr17	+	2043	14	FSM	ENSMUSG00000019487.12	ENSMUST00000224947.2	2016	14	-27	0	-27	0	multi-exon	FALSE	canonical	3	136	junction_12	68.855048845232	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTGGAGTCTGCACCGC	NA	False	NA	13	True	ATTAAA	-23	NA	57556427	57570427	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569353_57569473_57569999
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020390	chr17	+	200	1	Intergenic	novelGene_152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGACCTACTCCCCCATGT	NA	False	NA	NA	False	NA	NA	NA	57584819	57585019	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr17_+_57584800_57585000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020400	chr17	+	393	1	ISM	ENSMUSG00000024085.14	ENSMUST00000086723.10	6991	22	153982	0	41099	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTCTTCTGGAGTAATT	NA	False	NA	9	True	AATAAA	-19	NA	65061712	65062105	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_65061700_65062100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020411	chr17	-	185	1	Intergenic	novelGene_153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAACAAACAAACAAACTCT	NA	False	NA	NA	False	NA	NA	NA	66252130	66251945	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr17_-_66251900_66252100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020448	chr17	-	1456	3	FSM	ENSMUSG00000047407.18	ENSMUST00000172229.8	1446	3	-16	6	1	0	multi-exon	FALSE	canonical	3	41	junction_2	419.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	78	True	AATAAA	-20	NA	71156801	71151205	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_71152268_71153166_71153394_71156634
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020478	chr17	-	605	4	ISM	ENSMUSG00000024056.11	ENSMUST00000233750.2	3847	10	-20	14452	-3	1826	5prime_fragment	FALSE	canonical	3	8	junction_1	147.044966667419	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTCTGGGCCAGCAAGAT	NA	False	NA	NA	False	TTTAAA	-3	NA	71833805	71830121	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_71830439_71830576_71830655_71832627_71832738_71833705
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020502	chr17	+	215	1	Intergenic	novelGene_154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATACAACTGTTTGTGGA	NA	False	NA	NA	False	NA	NA	NA	73422779	73422994	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr17_+_73422800_73423000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020540	chr17	+	228	1	Intergenic	novelGene_155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTATTGTTGCCAGGCGGTG	NA	False	NA	NA	False	AAAAAG	-24	NA	75268936	75269164	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr17_+_75268900_75269200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020546	chr17	-	1229	1	ISM	ENSMUSG00000002017.11	ENSMUST00000112507.4	2817	8	13625	7	2251	2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTGCTCTGGGAGTTT	NA	False	NA	-8	True	AATAAA	-15	NA	75845316	75844087	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_75844100_75845300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020548	chr17	-	1936	8	FSM	ENSMUSG00000056121.17	ENSMUST00000070039.14	1939	8	10	-7	10	0	multi-exon	FALSE	canonical	3	258	junction_3	15.727267365169	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGAGTTTTTGTTCGGG	NA	False	NA	1	True	AATAAA	-20	NA	78725550	78685306	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_78686175_78689036_78689103_78692172_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020570	chr17	+	627	5	FSM	ENSMUSG00000062691.11	ENSMUST00000180077.7	602	5	-22	-3	-22	3	multi-exon	FALSE	canonical	3	686	junction_1	395.694563394546	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTGGGTCTGCAGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	79223906	79227738	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_79223955_79225785_79225902_79226484_79226530_79227187_79227273_79227405
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020607	chr17	+	2115	7	FSM	ENSMUSG00000035473.11	ENSMUST00000039205.11	2314	7	200	-1	200	1	multi-exon	FALSE	canonical	3	126	junction_3	8.09149072929224	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGACTCTTGTTCTTTTGT	NA	False	NA	12	True	AATAAA	-20	NA	80435099	80492531	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457600_80488989_80489132_80490620_80490796_80491412
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020609	chr17	-	2296	8	FSM	ENSMUSG00000024097.12	ENSMUST00000063417.11	2288	8	0	-8	0	8	multi-exon	FALSE	canonical	3	759	junction_3	505.274425335341	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGTCTTTGGAAGTATGA	NA	False	NA	-3	True	AATAAA	-31	NA	80514734	80507500	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020620	chr17	-	2252	7	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	135	junction_1	822.802257869748	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	-11	True	AATAAA	-23	NA	80514734	80507508	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_80509032_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020621	chr17	-	3162	7	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	759	junction_3	536.547735268934	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	-11	True	AATAAA	-23	NA	80514734	80507508	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80512868_80513276_80513458_80514603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020630	chr17	-	989	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234696.2	987	7	-2	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	923.958693160396	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_80509032_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020631	chr17	-	1743	8	NIC	ENSMUSG00000024097.12	novel	1991	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	75	junction_5	773.379728258785	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80512511_80512690_80512868_80513276_80513458_80514603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020632	chr17	-	1509	9	FSM	ENSMUSG00000024097.12	ENSMUST00000234503.2	1991	9	2	480	0	0	multi-exon	FALSE	canonical	3	75	junction_6	890.532565378718	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512050_80512511_80512690_80512868_80513276_80513458_80514603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020633	chr17	-	1698	8	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	130	junction_5	799.754732810667	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512050_80512868_80513276_80513458_80514603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020637	chr17	-	3309	6	NIC	ENSMUSG00000024097.12	novel	1921	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	1956	junction_1	145.974792344432	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_80509032_80509597_80509634_80510119_80511662_80511741_80512868_80513276_80513458_80514603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020638	chr17	-	1154	9	NNC	ENSMUSG00000024097.12	novel	1991	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_6	890.147003309004	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514732	80508738	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512403_80512511_80512690_80512868_80513276_80513458_80514603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020661	chr17	+	1115	3	FSM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	21	-2	21	2	multi-exon	FALSE	canonical	3	317	junction_1	34	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATTTCTATTCTTAAAA	NA	False	NA	41	True	ATTAAA	-32	NA	80531890	80535928	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_80532100_80533049_80533194_80535166
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020665	chr17	+	641	1	ISM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	3394	22	3394	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTTTCGGGTTCTTTTGA	NA	False	NA	17	True	AATAAA	-36	NA	80535263	80535904	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_80535300_80535900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020675	chr17	-	1865	10	FSM	ENSMUSG00000024246.10	ENSMUST00000025093.6	1833	10	-27	-5	-12	5	multi-exon	FALSE	canonical	3	99	junction_3	16.3940669785982	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTATAGACTCTTGTG	8137	False	NA	NA	False	ATTAAA	-27	NA	81372523	81333755	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_-_81334400_81340060_81340170_81344926_81345042_81345533_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020684	chr17	-	524	1	ISM	ENSMUSG00000024248.15	ENSMUST00000025095.9	1076	3	11885	4	2061	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTTGTTTGTTTTTTG	NA	False	NA	-27	True	AATAAA	-19	NA	83809874	83809350	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_83809400_83809900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020691	chr17	-	1225	3	NNC	ENSMUSG00000024248.15	novel	1076	3	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGATGTTTTTAGTTTGT	9947	False	NA	-37	True	AATAAA	-9	NA	83821759	83809360	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr17_-_83810167_83811528_83811658_83821469
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020710	chr17	+	190	1	Intergenic	novelGene_156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGCAACCACGAGCGAG	NA	False	NA	NA	False	NA	NA	NA	85136478	85136668	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr17_+_85136500_85136700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020713	chr17	+	2545	5	ISM	ENSMUSG00000061130.14	ENSMUST00000234851.2	1307	7	325	6649	325	-67	5prime_fragment	FALSE	canonical	3	708	junction_4	378.362921016317	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATATTACTCTTTGGTG	NA	False	NA	32	True	AATAAA	-21	NA	85301432	85324558	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85322836
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020715	chr17	+	1870	5	ISM	ENSMUSG00000061130.14	ENSMUST00000080217.14	2670	6	36006	79	325	-79	3prime_fragment	FALSE	canonical	3	718	junction_4	374.08855903382	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTCAGTTTCCACTTAT	NA	False	NA	23	True	AATAAA	-33	NA	85301432	85322040	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85320993
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020733	chr17	-	442	1	ISM	ENSMUSG00000024135.11	ENSMUST00000234761.2	1474	5	55325	0	55258	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTGTGCTGTTCATTG	NA	False	NA	-1	True	AATAAA	-15	NA	86292534	86292092	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_86292100_86292500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020743	chr17	-	315	1	NIC	ENSMUSG00000024145.7	novel	988	6	NA	NA	27836	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGCTTCAGATGCTGTT	1936	False	NA	-12	True	AATAAA	-15	NA	87304998	87304683	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_87304700_87305000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020755	chr17	-	1037	1	ISM	ENSMUSG00000024150.13	ENSMUST00000024963.11	2038	4	10241	215	10169	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87563122	87562085	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_-_87562100_87563100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020770	chr17	-	647	1	NIC	ENSMUSG00000036438.15	novel	1205	6	NA	NA	12790	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGCTCTGAATCTGAGT	NA	False	NA	-5	True	AATAAA	-21	NA	87741486	87740839	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr17_-_87740800_87741500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020788	chr17	+	134	1	ISM	ENSMUSG00000005370.5	ENSMUST00000005503.5	4251	10	15697	0	11056	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTTTCCATTTTCTTTC	NA	False	NA	31	True	AATAAA	-20	NA	88298186	88298320	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_88298200_88298300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020794	chr17	+	1367	1	FSM	ENSMUSG00000043346.10	ENSMUST00000057074.10	747	1	-39	-581	-39	581	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAGCCATCACCAAGTAC	NA	False	NA	NA	False	ATTAAA	-44	NA	91544199	91545566	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr17_+_91544200_91545600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020817	chr17	+	193	1	ISM	ENSMUSG00000095193.3	ENSMUST00000234295.2	3079	4	13209	2	4141	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTCGTCATGGTA	NA	False	NA	NA	False	NA	NA	NA	95185554	95185747	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr17_+_95185600_95185700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020831	chr18	-	942	1	FSM	ENSMUSG00000073647.5	ENSMUST00000097690.5	619	1	-313	-10	-313	10	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGCTCAGCGAGAGCCT	-2	True	NA	NA	False	AGTAAA	-27	NA	4199251	4198309	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_4198300_4199300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020835	chr18	+	2109	9	FSM	ENSMUSG00000024234.8	ENSMUST00000025077.7	2651	9	-3	545	-3	0	multi-exon	FALSE	canonical	3	181	junction_2	18.3711730708738	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTAGTATCTATTTTCT	-15	True	NA	18	True	AATAAA	-20	NA	4375588	4396785	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020842	chr18	-	1265	1	ISM	ENSMUSG00000041225.17	ENSMUST00000182066.8	4506	16	86651	21	8995	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTAATATTTTCCTTCCT	4394	False	NA	-14	True	ATTAAA	-30	NA	6025712	6024447	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_-_6024400_6025700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020852	chr18	+	502	1	FSM	ENSMUSG00000073640.4	ENSMUST00000097682.4	411	1	-42	-49	-42	49	mono-exon	FALSE	NA	NA	NA	NA	NA	309	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTAAATAATTTAAAAAATG	-9	True	NA	NA	False	ATTAAA	-25	NA	6332589	6333091	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_6332600_6333100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020859	chr18	+	1326	1	ISM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	23713	4246	23638	943	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGTGTCTTGTCTGTC	NA	False	NA	19	True	ATTAAA	-16	NA	6788857	6790183	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_+_6788900_6790200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020881	chr18	+	1038	4	FSM	ENSMUSG00000024287.9	ENSMUST00000234890.2	891	4	-1	-146	-1	17	multi-exon	FALSE	canonical	3	775	junction_2	35.5621521658443	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACTGGGGCACTGGAAG	9	True	NA	NA	False	ATTAAA	-10	NA	9958175	9961317	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020921	chr18	+	3455	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	308	0	-41	0	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	16	True	NA	NA	NA	13105287	13126007	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020931	chr18	-	2953	11	FSM	ENSMUSG00000037013.18	ENSMUST00000040924.9	3098	11	139	6	3	0	multi-exon	FALSE	canonical	3	178	junction_3	289.216597034126	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	-19	True	AATAAA	-17	NA	14815832	14758685	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020933	chr18	-	2629	9	FSM	ENSMUSG00000037013.18	ENSMUST00000234524.2	2603	9	0	-26	0	0	multi-exon	FALSE	canonical	3	40	junction_5	300.413048984228	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	-19	True	AATAAA	-17	NA	14815823	14758685	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14788083_14788238_14803365_14803451_14812443_14812521_14815723
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020945	chr18	+	606	1	FSM	ENSMUSG00000058064.7	ENSMUST00000079733.7	534	1	-21	-51	-21	51	mono-exon	FALSE	NA	NA	NA	NA	NA	3252	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGGAAAAATGCTATCCAA	NA	False	NA	NA	False	AATAAA	-26	NA	15965829	15966435	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_15965800_15966400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020971	chr18	+	486	3	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-341	-16611	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_2	15	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATGTCTTGGTTCCATT	NA	False	NA	NA	False	NA	NA	NA	21194638	21200631	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr18_+_21194811_21194905_21195074_21200485
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020979	chr18	+	611	1	ISM	ENSMUSG00000024277.15	ENSMUST00000170802.8	3936	8	139426	1492	87656	5	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGAAATTTCTTTTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	24024815	24025426	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_+_24024800_24025400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020982	chr18	+	178	1	FSM	ENSMUSG00000117405.2	ENSMUST00000234075.2	592	1	519	-105	519	105	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGTGAATTCCTCAGAGA	NA	False	NA	NA	False	AATAAA	-39	NA	24078534	24078712	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_24078500_24078700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020984	chr18	+	2377	3	FSM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	17	646	17	-646	multi-exon	FALSE	canonical	3	128	junction_1	18.5	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTCTTGCATCGTT	1076	False	NA	45	True	NA	NA	NA	24122705	24137787	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_24122789_24123234_24123448_24135706
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020988	chr18	+	276	1	ISM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	14823	646	14823	-646	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTCTTGCATCGTT	NA	False	NA	45	True	NA	NA	NA	24137511	24137787	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_+_24137500_24137800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000020993	chr18	-	3197	4	FSM	ENSMUSG00000051469.15	ENSMUST00000153337.2	1513	4	-27	-1657	23	1657	multi-exon	FALSE	canonical	3	66	junction_3	83.8212383587835	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCTTGGAATTGCCTTAC	NA	False	NA	NA	False	AATAAA	-28	NA	24153404	24145324	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153274
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021002	chr18	-	1762	1	ISM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	15432	3	8392	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTGGGGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	24239578	24237816	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_-_24237800_24239600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021006	chr18	+	182	1	Intergenic	novelGene_157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAATCTACCACTT	NA	False	NA	NA	False	NA	NA	NA	24367685	24367867	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr18_+_24367700_24367900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021009	chr18	+	1291	1	ISM	ENSMUSG00000000420.16	ENSMUST00000000430.14	3977	13	80182	2	5493	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATACTCTGAGTAGTTG	NA	False	NA	14	True	ATTAAA	-25	NA	24418582	24419873	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_+_24418600_24419900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021020	chr18	+	324	1	ISM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	34528	695	12303	2	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCTGATTTTGCCTTA	NA	False	NA	92	True	TTTAAA	-12	NA	24771545	24771869	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_+_24771500_24771900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021072	chr18	+	841	2	ISM	ENSMUSG00000087590.3	ENSMUST00000146010.3	430	3	-1	-3	-1	3	intron_retention	FALSE	canonical	3	377	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTGTATGTTGTGTGATT	NA	False	NA	18	True	AATAAA	-22	NA	33927943	33929042	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_+_33928178_33928435
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021074	chr18	+	373	2	FSM	ENSMUSG00000087590.3	ENSMUST00000179138.2	303	2	-48	-22	-1	5	multi-exon	FALSE	canonical	3	41	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTATGTTGTGTGATTGG	NA	False	NA	20	True	AATAAA	-24	NA	33927943	33929044	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_33928178_33928905
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021092	chr18	+	1033	6	FSM	ENSMUSG00000014504.17	ENSMUST00000142010.2	956	6	-31	-46	0	0	multi-exon	FALSE	canonical	3	34	junction_2	757.224141189384	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGTAGCTTTCACTTAG	NA	False	NA	4	True	AATAAA	-14	NA	34464197	34469652	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_34464313_34464802_34464879_34465958_34466116_34467345_34467418_34467509_34467622_34469151
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021110	chr18	+	2976	19	FSM	ENSMUSG00000003779.17	ENSMUST00000237407.2	3674	19	226	472	-46	0	multi-exon	TRUE	canonical	3	938	junction_13	99.0044268869321	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	6203	False	NA	23	True	AATAAA	-20	NA	34758013	34765858	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021113	chr18	-	2087	17	FSM	ENSMUSG00000024370.18	ENSMUST00000025228.12	2084	17	0	-3	0	3	multi-exon	FALSE	canonical	3	73	junction_1	259.182247655969	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTACTGTTCTTTCTAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	34784788	34764000	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_34764355_34767135_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021127	chr18	-	1309	1	Genic_Genomic	ENSMUSG00000024360.9	novel	NA	NA	NA	NA	27916	2	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTGCTTGAGATTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	35037144	35035835	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr18_-_35035800_35037100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021148	chr18	-	1694	10	FSM	ENSMUSG00000024357.11	ENSMUST00000025215.10	1703	10	9	0	9	0	multi-exon	TRUE	canonical	3	128	junction_3	10.8423039781937	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	False	NA	-2	True	ATTAAA	-18	NA	35631973	35399448	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481814_35551109_35551249_35571319_35571434_35631843
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021171	chr18	+	1540	5	FSM	ENSMUSG00000037058.17	ENSMUST00000235400.2	1522	5	-15	-3	-7	0	multi-exon	FALSE	canonical	3	31	junction_1	1449.29120607282	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCTTGTGTTATTGG	4657	False	NA	22	True	AATAAA	-16	NA	35731686	35750239	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_35731813_35741790_35741873_35743923_35744088_35746375_35746556_35749251
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021197	chr18	+	205	1	Intergenic	novelGene_158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGTGAGAGATGGCTC	NA	False	NA	NA	False	NA	NA	NA	36068647	36068852	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr18_+_36068600_36068900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021213	chr18	-	91	1	ISM	ENSMUSG00000024346.7	ENSMUST00000025204.7	1109	4	50351	407	47071	122	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATGTGCTTTTCTCCAC	NA	False	NA	-23	True	AATAAA	-20	NA	36537226	36537135	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_-_36537100_36537200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021227	chr18	-	970	5	FSM	ENSMUSG00000006050.13	ENSMUST00000173875.9	1979	5	503	506	-22	59	multi-exon	FALSE	canonical	3	1172	junction_4	156.810992918226	578	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTGTCTCATTCATCAA	NA	False	NA	50	True	NA	NA	NA	36803365	36800239	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056_36803183_36803300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021245	chr18	+	1753	12	NIC	ENSMUSG00000006850.9	novel	1823	12	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	17.804261724014	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTTGCCTCAGTGTTGC	NA	False	NA	53	True	AATAAA	-20	NA	36868197	36875450	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr18_+_36868310_36868440_36868554_36870509_36870633_36870721_36870906_36871148_36871254_36871414_36871501_36871680_36871798_36872005_36872118_36872207_36872395_36874104_36874200_36874714_36874883_36875099
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021274	chr18	+	1482	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	33	795	33	788	multi-exon	FALSE	canonical	3	554	junction_5	81.4331627778266	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTTTGGTGACAAGTCT	6649	False	NA	20	True	AGTAAA	-24	NA	36926961	36931924	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021277	chr18	+	600	1	ISM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	4200	991	2321	592	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGTTTCTTCTGTTTCAC	966	False	NA	31	True	ATTAAA	-28	NA	36931128	36931728	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_+_36931100_36931700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021285	chr18	+	2304	4	FSM	ENSMUSG00000102428.2	ENSMUST00000044851.8	5080	4	2776	0	2583	0	multi-exon	FALSE	canonical	3	109	junction_1	53.597263611743	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	NA	False	NA	17	True	AATAAA	-20	NA	37901408	37974926	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_37901594_37958073_37958133_37966317_37966407_37972955
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021288	chr18	+	963	1	ISM	ENSMUSG00000103144.2	ENSMUST00000194190.2	4692	4	179118	0	179118	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	NA	False	NA	17	True	AATAAA	-20	NA	37973963	37974926	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_+_37974000_37974900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021293	chr18	-	1988	2	ISM	ENSMUSG00000024456.17	ENSMUST00000115629.9	5416	26	54776	-4	1767	0	3prime_fragment	FALSE	canonical	3	103	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCCTCTAGCCTCCTTTG	2479	False	NA	-20	True	AATAAA	-15	NA	37984693	37976653	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_-_37978552_37984603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021299	chr18	+	203	1	Intergenic	novelGene_159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCATTTTCCCTCACC	NA	False	NA	NA	False	NA	NA	NA	38085151	38085354	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr18_+_38085200_38085400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021314	chr18	-	2289	7	FSM	ENSMUSG00000052102.16	ENSMUST00000063814.15	2289	7	23	-23	0	0	multi-exon	FALSE	canonical	3	1055	junction_1	137.188434886716	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCATTCTCCTGAGTT	NA	False	NA	-7	True	AATAAA	-17	NA	38472033	38460587	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021323	chr18	+	1701	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236085.2	1796	8	95	0	18	0	multi-exon	FALSE	canonical	3	612	junction_4	51.8734724387826	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTAGTGTTTCATTTGGGG	9162	False	NA	44	True	AATAAA	-29	NA	38552054	38598250	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597329
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021349	chr18	+	2034	8	ISM	ENSMUSG00000024498.17	ENSMUST00000025375.15	4101	21	49470	-51	7589	51	3prime_fragment	FALSE	canonical	3	625	junction_5	65.9863931552002	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTTTTTTATTTTTTC	NA	False	NA	20	True	AATATA	-18	NA	42694035	42708670	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_+_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021357	chr18	-	2441	1	FSM	ENSMUSG00000043424.11	ENSMUST00000057110.11	2379	1	-62	0	-62	0	mono-exon	FALSE	NA	NA	NA	NA	NA	315	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGGTACAGGCGTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	43610923	43608482	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_43608500_43610900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021380	chr18	+	1448	1	ISM	ENSMUSG00000057561.11	ENSMUST00000238168.2	2012	4	10030	71	9717	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCTTTTTAATATGTT	NA	False	NA	17	True	AATAAA	-18	NA	46740797	46742245	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_+_46740800_46742200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021391	chr18	-	2485	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	0	2280	0	-2280	multi-exon	FALSE	canonical	3	312	junction_1	11.8977121983832	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGAATAACTTATTGTC	NA	False	NA	-9	True	AATAAA	-20	NA	46874646	46865490	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021414	chr18	+	547	1	FSM	ENSMUSG00000117621.2	ENSMUST00000234633.2	515	1	-3	-29	-3	29	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCCACTATTATTTTGTG	NA	False	NA	NA	False	AATAAA	-22	NA	47245202	47245749	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_47245200_47245700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021426	chr18	+	2047	8	FSM	ENSMUSG00000024528.9	ENSMUST00000025406.9	2656	8	-49	658	-49	-658	multi-exon	FALSE	canonical	3	351	junction_5	82.8179710360657	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTGTGACTTATCTTT	NA	False	NA	10	True	AATAAA	-22	NA	52598715	52624345	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021438	chr18	-	1744	4	NIC	ENSMUSG00000024538.9	novel	1403	5	NA	NA	82	-2	intron_retention	FALSE	canonical	3	375	junction_3	11.7756811551038	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTTTTTTTGCAAGACTT	NA	False	NA	-13	True	ATTAAA	-18	NA	53551105	53539405	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr18_-_53540138_53542196_53542382_53544058_53544692_53550911
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021458	chr18	+	207	1	Intergenic	novelGene_160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCCTGTGGGAGAATAA	NA	False	NA	NA	False	NA	NA	NA	56777314	56777521	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr18_+_56777300_56777500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021460	chr18	+	211	1	Intergenic	novelGene_161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAAGCTGTCCTTTGC	NA	False	NA	NA	False	NA	NA	NA	56807516	56807727	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr18_+_56807500_56807700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021477	chr18	+	1706	9	FSM	ENSMUSG00000024594.10	ENSMUST00000025490.10	5030	9	-19	3343	-19	378	multi-exon	FALSE	canonical	3	500	junction_4	197.841121547064	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTTTTTACTGTCATAA	NA	False	NA	NA	False	AATAAA	-37	NA	57487793	57522685	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_57487964_57495504_57495622_57496147_57496538_57498260_57498422_57504438_57504542_57507598_57507763_57514699_57514804_57517245_57517349_57522291
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021481	chr18	+	1015	5	NIC	ENSMUSG00000024594.10	novel	523	5	NA	NA	-53	383	combination_of_known_junctions	FALSE	canonical	3	294	junction_1	276.069284781918	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTACTGTCATAATTTCA	NA	False	NA	NA	False	AATAAA	-42	NA	57506910	57522690	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245_57517349_57522291
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021493	chr18	+	341	1	ISM	ENSMUSG00000024594.10	ENSMUST00000025490.10	5030	9	34532	3343	8472	378	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTTTTTACTGTCATAA	NA	False	NA	NA	False	AATAAA	-37	NA	57522344	57522685	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_+_57522300_57522700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021497	chr18	+	221	1	Intergenic	novelGene_162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATGATTAATAATTAAAC	NA	False	NA	NA	False	NA	NA	NA	60612445	60612666	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr18_+_60612400_60612700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021533	chr18	-	436	1	NIC	ENSMUSG00000024613.17	novel	4595	26	NA	NA	14837	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	-18	True	AATAAA	-17	NA	60947262	60946826	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr18_-_60946800_60947300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021536	chr18	-	515	1	ISM	ENSMUSG00000024619.9	ENSMUST00000025521.9	1750	3	16823	0	16823	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTGCCATCCTTTCTCGT	NA	False	NA	-5	True	ATTAAA	-22	NA	61152448	61151933	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_-_61151900_61152400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021544	chr18	-	928	1	FSM	ENSMUSG00000091957.4	ENSMUST00000076842.7	879	1	-26	-23	-15	23	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAATTAAGTCTGCTG	7408	False	NA	NA	False	NA	NA	NA	61393058	61392130	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_61392100_61393100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021548	chr18	+	2368	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165721.8	2323	10	-43	-2	-4	2	multi-exon	TRUE	canonical	3	816	junction_9	364.192494210831	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGTGAAATTTTTTTAAA	424	False	NA	29	True	ATTAAA	-22	NA	61688340	61721377	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021580	chr18	+	128	1	ISM	ENSMUSG00000044176.13	ENSMUST00000055725.12	7817	9	21	119011	-12	-103290	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGACCCTTGATTTCGGGG	NA	False	NA	12	True	AATAAA	-20	NA	62682002	62682130	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_+_62682000_62682100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021583	chr18	+	3537	12	FSM	ENSMUSG00000024581.14	ENSMUST00000025474.14	3567	12	30	0	0	0	multi-exon	FALSE	canonical	3	194	junction_8	19.1691039293584	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTCAGTTTTATTTGCT	NA	False	NA	6	True	AATAAA	-18	NA	63110931	63132521	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021596	chr18	-	1364	1	FSM	ENSMUSG00000060096.6	ENSMUST00000072796.6	1005	1	-327	-32	-327	32	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGACACACAGGAGGTG	NA	False	NA	NA	False	AAGAAA	-12	NA	64583087	64581723	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_64581700_64583100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021606	chr18	-	2915	14	FSM	ENSMUSG00000024587.11	ENSMUST00000237585.2	2268	14	-78	-569	0	-2	multi-exon	FALSE	canonical	3	3478	junction_13	534.16599817797	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGCTGACTTATTTTC	NA	False	NA	NA	False	AATAAA	-29	NA	64649586	64632719	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021630	chr18	-	1748	13	FSM	ENSMUSG00000041891.17	ENSMUST00000236866.2	4676	13	-1	2929	-1	574	multi-exon	FALSE	canonical	3	864	junction_5	66.5663307452716	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTTCATAGTACTACAT	NA	False	NA	0	True	AATAAA	-18	NA	66135711	66116756	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021666	chr18	+	193	1	Intergenic	novelGene_163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCAGTATGTTTACATT	NA	False	NA	NA	False	NA	NA	NA	67738709	67738902	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr18_+_67738700_67738900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021674	chr18	+	1304	7	FSM	ENSMUSG00000024537.6	ENSMUST00000235799.2	1300	7	-2	-2	0	2	multi-exon	FALSE	canonical	1	2	junction_1	156.039168871864	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTTTTATCTGGAAAGTA	NA	False	NA	28	True	AATAAA	-34	NA	67774668	67787234	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_67775049_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021677	chr18	-	1623	10	FSM	ENSMUSG00000024539.18	ENSMUST00000025420.14	1568	10	-40	-15	-33	14	multi-exon	FALSE	canonical	0	0	junction_7	132.404915801473	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATGTGTGTGTTAT	NA	False	NA	0	True	ATTAAA	-33	NA	67857698	67798566	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_67798945_67805736_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021693	chr18	+	2069	11	FSM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	2	2937	2	9	multi-exon	FALSE	canonical	3	765	junction_7	139.06832852954	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGAGACTCTATAGACGA	NA	False	NA	96	True	AATAAA	-26	NA	68433427	68454986	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021710	chr18	-	3225	9	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	72	junction_5	57.5298835389052	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTGTTACGTCTCCTTT	NA	False	NA	0	True	AATAAA	-20	NA	70605551	70585280	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70600557_70600829_70601589_70602519_70602849_70604743_70605051_70605361
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021719	chr18	-	2308	9	NIC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	116	junction_8	75.0961883187156	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGCTCTCACTGTAAGTT	NA	False	NA	-15	True	AATAAA	-20	NA	70663347	70641753	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70663258
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021731	chr18	-	766	1	ISM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	44633	137	44633	-137	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTCAGTTACATTATCT	NA	False	NA	0	True	AATAAA	-20	NA	73903876	73903110	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_-_73903100_73903900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021766	chr18	+	1123	5	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	43	-106	intron_retention	FALSE	canonical	3	6761	junction_1	1793.50557568132	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133590	75136345	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr18_+_75133615_75134261_75134315_75134420_75135194_75135731_75135924_75136264
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021771	chr18	+	902	6	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	45	-102	intron_retention	FALSE	canonical	3	6761	junction_1	1972.2719285129	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGTGGTCTTTAATGAG	NA	False	NA	37	True	AATAAA	-37	NA	75133592	75136349	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr18_+_75133615_75134261_75134315_75134420_75134872_75135094_75135194_75135731_75135924_75136264
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021784	chr18	+	1092	3	FSM	ENSMUSG00000036299.6	ENSMUST00000237263.2	1266	3	-36	210	-4	9	multi-exon	FALSE	canonical	3	388	junction_1	205.5	254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTCTTTTCATACTTG	NA	False	NA	35	True	ATTAAA	-26	NA	75138934	75143013	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_75139186_75141721_75141898_75142348
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021799	chr18	+	2541	11	FSM	ENSMUSG00000024563.17	ENSMUST00000168423.9	8089	11	312	5236	-154	433	multi-exon	FALSE	canonical	3	248	junction_5	13.3850663054017	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGACCTTTTGCCTCATTT	NA	False	NA	15	True	AATAAA	-20	NA	76374962	76438798	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_76375051_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021822	chr18	+	2279	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	-7	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	47	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACTTAACTATGTAGCAT	6432	False	NA	12	True	ATTAAA	-24	NA	77126250	77234626	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021855	chr18	+	1453	1	FSM	ENSMUSG00000117949.2	ENSMUST00000236190.2	253	1	-916	-284	-916	284	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACACAGCATAACCGTGC	NA	False	NA	NA	False	AATAAA	-21	NA	80062477	80063930	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_80062500_80063900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021858	chr18	-	1385	6	FSM	ENSMUSG00000024570.8	ENSMUST00000025462.7	1377	6	-4	-4	-4	4	multi-exon	FALSE	canonical	3	236	junction_3	30.0026665481587	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTGTATACGCACAATG	NA	False	NA	1	True	AATAAA	-24	NA	80243877	80235475	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_-_80236098_80236446_80236515_80238233_80238319_80240464_80240578_80240878_80241099_80243600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021861	chr18	+	1707	4	FSM	ENSMUSG00000024571.16	ENSMUST00000125127.8	1683	4	-17	-7	16	-2	multi-exon	FALSE	canonical	3	1096	junction_3	900.996608699993	878	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTTGTGGGAATTCAT	NA	False	NA	NA	False	AATAAA	-19	NA	80249995	80255954	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr18_+_80250117_80250368_80250559_80253276_80253346_80254627
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021873	chr18	+	710	4	NNC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	-17	193	at_least_one_novel_splicesite	FALSE	canonical	3	163	junction_1	1063.7732632265	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80250060	80265746	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr18_+_80250124_80250368_80250559_80261918_80262023_80265393
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021942	chr18	+	305	1	ISM	ENSMUSG00000024614.8	ENSMUST00000025515.7	4611	16	32809	0	5909	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTACCTTTAATATGTGT	NA	False	NA	25	True	AATAAA	-25	NA	90561086	90561391	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr18_+_90561100_90561400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021961	chr19	+	205	1	Intergenic	novelGene_164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGGTTCTGGAAGGCAA	NA	False	NA	NA	False	NA	NA	NA	3567033	3567238	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr19_+_3567000_3567200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021967	chr19	+	1921	4	FSM	ENSMUSG00000035372.3	ENSMUST00000039048.2	1882	4	-40	1	0	0	multi-exon	FALSE	canonical	3	184	junction_1	53.9897109539298	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGTGGGTCTGTGT	NA	False	NA	10	True	ATTAAA	-22	NA	3758292	3767880	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_3758437_3764403_3764626_3765637_3765803_3766490
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000021980	chr19	-	2612	20	FSM	ENSMUSG00000001750.17	ENSMUST00000001801.11	2688	20	76	0	-17	0	multi-exon	FALSE	canonical	3	39	junction_12	8.58007741992203	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCTGTCCTCTCTG	NA	False	NA	0	True	AATAAA	-20	NA	3957057	3946049	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952036_3952343_3952557_3952630_3952725_3952881_3952965_3953045_3953173_3953339_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022022	chr19	-	849	7	FSM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	-46	-6	-46	6	multi-exon	FALSE	canonical	3	1174	junction_6	961.706469424706	1070	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGTGCCGTTTCCTGT	NA	False	NA	NA	False	AATAAA	-22	NA	4092309	4090278	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022027	chr19	-	997	6	ISM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	26	0	-19	0	intron_retention	FALSE	canonical	3	1402	junction_5	871.235766024329	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4092237	4090284	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022030	chr19	-	937	6	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-19	0	intron_retention	FALSE	canonical	3	1174	junction_5	1038.62948157656	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4092237	4090284	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr19_-_4090540_4090707_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022059	chr19	+	1018	5	FSM	ENSMUSG00000024845.20	ENSMUST00000139718.10	1012	5	0	-6	0	0	multi-exon	FALSE	canonical	3	226	junction_3	207.505421615918	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACAGTTGCACTTTCCTGG	4370	False	NA	NA	False	AATAAA	-21	NA	4175958	4181731	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181227_4181282_4181360
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022069	chr19	+	1870	11	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	4	0	combination_of_known_junctions	TRUE	canonical	3	159	junction_1	140.317354593079	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3579	False	NA	18	True	AATAAA	-19	NA	4198621	4204034	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr19_+_4198722_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022086	chr19	-	2110	11	FSM	ENSMUSG00000024824.8	ENSMUST00000025740.8	2081	11	-29	0	-3	0	multi-exon	FALSE	canonical	3	334	junction_4	40.0660704337224	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTGTGTTCCCCGTGAC	5969	False	NA	0	True	AATAAA	-15	NA	4251664	4245194	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022115	chr19	-	2781	3	FSM	ENSMUSG00000006456.11	ENSMUST00000006625.8	3165	3	31	353	-18	0	multi-exon	FALSE	canonical	3	363	junction_1	19	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTGTCATTGTCTTGA	7796	False	NA	0	True	AATAAA	-27	NA	4861631	4850949	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_4851834_4852578_4854044_4861199
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022131	chr19	-	322	1	ISM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	20737	0	7517	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCAGTGTATGTTTCTTT	4151	False	NA	-5	True	AATAAA	-17	NA	4957578	4957256	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_-_4957300_4957600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022141	chr19	+	213	1	Intergenic	novelGene_165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGCTAGAAACCATCTA	NA	False	NA	NA	False	NA	NA	NA	4975020	4975233	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr19_+_4975000_4975200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022152	chr19	+	446	1	ISM	ENSMUSG00000024891.7	ENSMUST00000236152.2	2619	12	7664	3	5347	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCCTGGAGTGTTCACT	NA	False	NA	18	True	ATTAAA	-19	NA	5081551	5081997	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_+_5081600_5082000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022157	chr19	+	1392	10	FSM	ENSMUSG00000080268.5	ENSMUST00000116567.4	1388	10	-4	0	-4	0	multi-exon	FALSE	canonical	3	224	junction_4	16.1528195757556	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGCTGATGTGTGGCTG	2726	False	NA	8	True	AATAAA	-19	NA	5091377	5099945	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022161	chr19	+	137	1	ISM	ENSMUSG00000024875.6	ENSMUST00000238093.2	1018	7	3824	0	3441	0	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGACCCTGGTTCC	NA	False	NA	26	True	NA	NA	NA	5142396	5142533	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_+_5142400_5142500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022165	chr19	-	1879	6	FSM	ENSMUSG00000024870.7	ENSMUST00000025804.7	1913	6	34	0	-33	0	multi-exon	FALSE	canonical	3	994	junction_1	78.6628247649422	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGGTGACTGAGTGTGG	1535	False	NA	0	True	AATAAA	-43	NA	5157066	5149232	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_5150601_5150694_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022190	chr19	-	316	1	ISM	ENSMUSG00000024844.16	ENSMUST00000025762.16	1261	3	2215	0	1410	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGTTCTGTGTCAGAG	9985	False	NA	-6	True	AATAAA	-17	NA	5414981	5414665	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_-_5414700_5415000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022212	chr19	+	218	1	ISM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	3292	1276	3011	-1276	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCTGAGTGGCTCTC	5084	False	NA	24	True	ATTAAA	-24	NA	5420060	5420278	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_+_5420100_5420300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022250	chr19	+	977	4	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	5	4	intron_retention	FALSE	canonical	2	40	junction_2	2932.75096491711	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTTTGGGTTTGGGATT	NA	False	NA	16	True	NA	NA	NA	5540548	5544061	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr19_+_5540631_5542524_5542690_5543182_5543260_5543408
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022258	chr19	+	212	1	Genic_Genomic	ENSMUSG00000056201.9	novel	NA	NA	NA	NA	4442	17	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCCGAGGGCTTATGTGG	NA	False	NA	NA	False	NA	NA	NA	5545034	5545246	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr19_+_5545000_5545200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022272	chr19	-	1903	12	FSM	ENSMUSG00000024926.11	ENSMUST00000235701.2	1905	12	3	-1	-1	0	multi-exon	FALSE	canonical	3	222	junction_9	58.4797768251612	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTATCAGGAGTTCTTAC	3632	False	NA	-5	True	AATAAA	-16	NA	5660073	5653043	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022293	chr19	-	904	1	FSM	ENSMUSG00000092341.4	ENSMUST00000172812.3	6983	1	1	6078	0	148	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAATGGAAGTTAAGACAA	4062	False	NA	13	True	AATAGA	-27	NA	5852699	5851795	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_5851800_5852700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022295	chr19	-	3177	1	FSM	ENSMUSG00002076852.1	ENSMUST00020181828.1	152	1	-1041	-1984	-1041	1984	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAATTGTCATGGCTGTT	10001	False	NA	-7	True	AATAAA	-20	NA	5895506	5892329	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_5892300_5895500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022305	chr19	-	1487	2	FSM	ENSMUSG00000045664.6	ENSMUST00000055458.6	3411	2	-1	1925	-1	-1925	multi-exon	FALSE	canonical	3	11	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGCATCCTGTCCCCTT	NA	False	NA	-13	True	AATAAA	-18	NA	5974845	5967588	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_5969022_5974791
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022307	chr19	-	2421	18	FSM	ENSMUSG00000024833.16	ENSMUST00000025752.15	2421	18	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_17	37.0964328301216	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAATCTTTTTTTTTTCC	1626	False	NA	0	True	AATAAA	-21	NA	6014230	5990569	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022335	chr19	+	608	4	NIC	ENSMUSG00000038274.14	novel	613	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	11442	junction_1	1225.19776181462	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1089	False	NA	4	True	AATAAA	-16	NA	6107980	6109549	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr19_+_6108032_6108272_6108603_6109173_6109230_6109378
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022356	chr19	-	1371	8	FSM	ENSMUSG00000024792.10	ENSMUST00000160977.8	922	8	-38	-411	3	5	multi-exon	FALSE	canonical	3	381	junction_7	88.3658905474556	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCAGCTTTTTCCATCT	6430	False	NA	NA	False	AATAAA	-23	NA	6134983	6130786	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134824
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022464	chr19	-	1055	6	FSM	ENSMUSG00000024963.13	ENSMUST00000179118.2	840	6	-215	0	16	0	multi-exon	TRUE	canonical	3	37	junction_3	69.5097115516961	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9292	False	NA	-4	True	AATAAA	-17	NA	6969855	6965278	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_6965477_6965556_6965644_6966790_6966953_6967048_6967234_6968085_6968180_6969526
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022488	chr19	-	1691	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	20	2	20	-2	multi-exon	TRUE	canonical	3	1089	junction_1	76.373351955305	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTGTCTGGCCCATGCA	NA	False	NA	0	True	AATAAA	-24	NA	7183661	7175568	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022520	chr19	-	436	1	ISM	ENSMUSG00000024970.6	ENSMUST00000025924.4	3152	6	24865	1231	16208	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAAGTTCTGTGTGGG	6361	False	NA	NA	False	AATAAA	-13	NA	7335494	7335058	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_-_7335100_7335500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022552	chr19	+	601	10	FSM	ENSMUSG00000108414.2	ENSMUST00000206155.2	605	10	8	-4	-4	4	multi-exon	FALSE	canonical	3	444	junction_1	203.637719952995	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGATGGCTTATTTGATT	NA	False	NA	30	True	AATAAA	-19	NA	8700846	8703811	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_8700871_8701504_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022554	chr19	+	619	10	NIC	ENSMUSG00000108414.2	novel	605	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	350.936243374178	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8700850	8703807	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr19_+_8700871_8701504_8701554_8701740_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022556	chr19	+	762	8	FSM	ENSMUSG00000108414.2	ENSMUST00000206135.2	744	8	-18	0	0	0	multi-exon	FALSE	canonical	3	781	junction_1	116.047316176794	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8701503	8703807	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_8701554_8701766_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022560	chr19	+	1258	11	FSM	ENSMUSG00000042729.12	ENSMUST00000049424.11	1204	11	-47	-7	-35	7	multi-exon	FALSE	canonical	3	1012	junction_8	78.6635875103596	465	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTTGTGATGGGAGAAAC	928	False	NA	35	True	AATAAA	-28	NA	8713155	8717995	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022598	chr19	-	761	5	FSM	ENSMUSG00000118346.2	ENSMUST00000237634.2	775	5	14	0	-8	0	multi-exon	FALSE	canonical	3	67	junction_4	80.9073544246751	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATGGATTTCTTGATGT	5088	False	NA	-4	True	AATATA	-17	NA	8751817	8749888	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8750987_8751698
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022669	chr19	-	384	1	FSM	ENSMUSG00000070167.3	ENSMUST00000093658.3	148	1	-85	-151	-85	151	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCCTGTGTTCGCTACCT	NA	False	NA	-38	True	AATAAA	-16	NA	8866134	8865750	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_8865800_8866100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022671	chr19	+	671	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	0	135	0	0	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	666	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGAAGTGCAGCAGGG	NA	False	NA	32	True	AATAAA	-21	NA	8866216	8868110	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022699	chr19	+	3140	18	FSM	ENSMUSG00000071646.10	ENSMUST00000096240.3	3135	18	-8	3	-8	-3	multi-exon	FALSE	canonical	3	728	junction_3	72.954410564141	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGCTCAGCTATTCTGT	3461	False	NA	17	True	AATAAA	-21	NA	8919230	8929664	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022706	chr19	+	2767	9	FSM	ENSMUSG00000071645.7	ENSMUST00000096239.7	2753	9	-14	0	-14	0	multi-exon	FALSE	canonical	3	129	junction_7	18.3234822018087	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTTCTTTTGCATAC	1343	False	NA	11	True	AATAAA	-26	NA	8931196	8943574	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707_8940187_8941383_8941494_8941627_8941739_8941924_8942018_8942397
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022733	chr19	+	1274	1	FSM	ENSMUSG00000067608.6	ENSMUST00000088040.6	781	1	-142	-351	-142	351	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCAAGTGACCATAGGTAT	NA	False	NA	NA	False	AATAAA	-37	NA	9260601	9261875	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_9260600_9261900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022769	chr19	+	624	1	ISM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	13363	0	2932	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	18	True	AATAAA	-19	NA	10173614	10174238	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_+_10173600_10174200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022776	chr19	-	2103	2	FSM	ENSMUSG00000024742.16	ENSMUST00000116542.9	2100	2	0	-3	0	3	multi-exon	FALSE	canonical	3	443	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGTCTGAATGTTTGA	2155	False	NA	NA	False	AATAAA	-17	NA	10181307	10176498	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_10178462_10181167
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022785	chr19	+	820	3	ISM	ENSMUSG00000036372.15	ENSMUST00000040372.14	606	4	196	6	-8	0	intron_retention	FALSE	canonical	3	2797	junction_1	592.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTCATGTCCATTC	4173	False	NA	27	True	AATAAA	-16	NA	10181573	10185182	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_+_10181629_10183787_10183898_10184527
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022786	chr19	+	1034	3	FSM	ENSMUSG00000036372.15	ENSMUST00000127878.2	1026	3	-8	0	-8	0	multi-exon	FALSE	canonical	3	2797	junction_1	181	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTCATGTCCATTC	4173	False	NA	27	True	AATAAA	-16	NA	10181573	10185182	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_10181629_10183787_10184665_10185080
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022794	chr19	-	1956	4	FSM	ENSMUSG00000024668.9	ENSMUST00000025570.8	2981	4	-78	1103	-11	4	multi-exon	FALSE	canonical	3	201	junction_1	14.7196014438797	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGTTTGATCTACATCC	NA	False	NA	NA	False	AATAAA	-21	NA	10502557	10479000	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10502422
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022806	chr19	-	1031	5	FSM	ENSMUSG00000024667.13	ENSMUST00000059582.9	999	5	-3	-29	2	-2	multi-exon	FALSE	canonical	3	35	junction_4	20.6079474960511	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCTGGTTGATTTTCTC	NA	False	NA	-5	True	AATAAA	-15	NA	10533118	10527826	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022847	chr19	-	1690	4	FSM	ENSMUSG00000024732.8	ENSMUST00000025639.7	3003	4	-6	1319	-6	-1319	multi-exon	FALSE	canonical	3	231	junction_1	21.483844059096	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTTCAGCTGTGAATT	NA	False	NA	-95	True	AAAACA	-7	NA	10926636	10920163	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022849	chr19	+	1194	4	FSM	ENSMUSG00000024683.7	ENSMUST00000167199.3	1162	4	-32	0	-32	0	multi-exon	FALSE	canonical	3	302	junction_3	22.4499443206436	376	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTTATCTCCGGACCT	129	False	NA	NA	False	NA	NA	NA	11747722	11752324	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_11747889_11748165_11748232_11750238_11750388_11751511
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022860	chr19	+	1811	3	ISM	ENSMUSG00000046139.9	ENSMUST00000061618.9	4216	19	30301	121	30257	-121	3prime_fragment	FALSE	canonical	3	277	junction_1	2	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCTTTATACCTTTCT	6934	False	NA	7	True	AATAAA	-21	NA	11920063	11922334	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_+_11920085_11920188_11920339_11920694
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022895	chr19	-	1402	13	FSM	ENSMUSG00000024659.16	ENSMUST00000025561.8	1674	13	272	0	1	0	multi-exon	FALSE	canonical	3	18	junction_4	3.1446603773522	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCATTGTCTCTC	7277	False	NA	2	True	AATAAA	-23	NA	20368036	20350791	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_20351135_20352588_20352712_20354015_20354075_20354970_20355067_20355759_20355854_20357012_20357070_20357703_20357784_20359413_20359505_20360225_20360340_20361120_20361216_20361838_20361948_20362056_20362137_20367975
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022906	chr19	+	2554	2	Intergenic	novelGene_166	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3428	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATCGCATAACTGTCTCT	1177	False	NA	NA	False	NA	NA	NA	22699835	22702603	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr19_+_22700550_22700763
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022909	chr19	+	155	1	Intergenic	novelGene_167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	23060425	23060580	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr19_+_23060400_23060600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022929	chr19	-	1442	10	NNC	ENSMUSG00000024943.10	novel	5683	25	NA	NA	6350	-15569	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	128.249756335051	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTCTTTCCTGCATTTT	NA	False	NA	NA	False	AATAAA	-6	NA	23234880	23207667	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr19_-_23207912_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022931	chr19	+	919	1	FSM	ENSMUSG00000051255.7	ENSMUST00000056396.7	633	1	-26	-260	-26	260	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAACAGCGGAT	NA	False	NA	NA	False	NA	NA	NA	23653185	23654104	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_23653200_23654100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000022948	chr19	+	472	1	Intergenic	novelGene_168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTGAAAATCCCATGTAAA	5835	False	NA	NA	False	AATAAA	-37	NA	25010493	25010965	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr19_+_25010500_25011000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023005	chr19	-	3245	6	FSM	ENSMUSG00000040451.19	ENSMUST00000151289.9	3262	6	18	-1	18	0	multi-exon	FALSE	canonical	3	81	junction_5	43.4069118920017	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTATTATATTGTGTT	8037	False	NA	-1	True	AATAAA	-18	NA	32188395	32100126	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32188227
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023009	chr19	+	906	1	NIC	ENSMUSG00000097787.3	novel	1647	2	NA	NA	17	-1052	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTGCTCCTGTGTGAG	NA	False	NA	NA	False	AATACA	-21	NA	32366632	32367538	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr19_+_32366600_32367500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023027	chr19	+	1172	11	FSM	ENSMUSG00000024800.9	ENSMUST00000025714.9	1145	11	-29	2	-14	-2	multi-exon	FALSE	canonical	3	930	junction_4	72.6416547168359	352	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGATTTTTAAATTTTAC	NA	False	NA	NA	False	AATAAA	-24	NA	36061101	36082175	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023051	chr19	-	3268	25	FSM	ENSMUSG00000056999.17	ENSMUST00000131070.3	5059	25	-48	1839	-48	-152	multi-exon	TRUE	canonical	3	707	junction_13	63.1947496940125	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGATGTAGAATATTTTTAA	NA	False	NA	-18	True	AATAAA	-15	NA	37340058	37247980	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023073	chr19	-	1432	14	FSM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	-21	-9	-3	9	multi-exon	TRUE	canonical	3	295	junction_2	36.3583414649629	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTTTCCTTTCATTAAA	NA	False	NA	2	True	AATAAA	-29	NA	38212607	38176919	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023093	chr19	-	478	1	ISM	ENSMUSG00000055044.13	ENSMUST00000068439.13	2571	7	48900	1066	640	124	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGACCTCTTAGTTGAC	NA	False	NA	-18	True	AATAAA	-18	NA	40211160	40210682	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_-_40210700_40211200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023101	chr19	-	3440	19	FSM	ENSMUSG00000025007.14	ENSMUST00000176939.8	3427	19	-13	0	0	0	multi-exon	FALSE	canonical	3	185	junction_12	241.939820085925	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	-11	True	AATAAA	-18	NA	40576826	40538700	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562660_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023106	chr19	-	613	3	NNC	ENSMUSG00000061132.14	novel	1701	17	NA	NA	58655	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	6.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGCATTTTCAG	NA	False	NA	NA	False	AATAAA	-16	NA	40923936	40917370	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr19_-_40917737_40922870_40923027_40923845
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023159	chr19	+	2584	12	FSM	ENSMUSG00000018820.14	ENSMUST00000099443.11	2573	12	-10	-1	-10	1	multi-exon	FALSE	canonical	3	55	junction_1	33.3877792261314	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTGTCAGGTCTCCTA	NA	False	NA	8	True	AATAAA	-15	NA	42159022	42180157	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_42159108_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023174	chr19	-	2913	9	FSM	ENSMUSG00000040018.10	ENSMUST00000045562.6	4798	9	19	1866	19	-1866	multi-exon	FALSE	canonical	3	354	junction_3	36.2782217728488	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGTCAGCTAACCCAG	NA	False	NA	-14	True	AATAAA	-18	NA	43741420	43723558	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023256	chr19	-	828	2	ISM	ENSMUSG00000025223.16	ENSMUST00000056931.14	2295	11	5511	-1	768	0	3prime_fragment	FALSE	canonical	3	350	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTCATGTTCCCCTATT	9023	False	NA	-30	True	ATTAAA	-21	NA	46022549	46021031	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_-_46021781_46022470
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023266	chr19	+	511	1	ISM	ENSMUSG00000015176.12	ENSMUST00000165017.2	3634	13	8162	993	7971	74	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATGGTAATAATTTTCCC	8040	False	NA	29	True	ATTAAA	-34	NA	46072463	46072974	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_+_46072500_46073000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023288	chr19	-	1182	10	NIC	ENSMUSG00000036748.17	novel	1164	10	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	122	junction_9	380.63750942366	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5841	False	NA	-2	True	AGTAAA	-19	NA	46327080	46318978	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321138_46326751_46326851_46327007
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023291	chr19	-	1143	10	NIC	ENSMUSG00000036748.17	novel	1164	10	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_9	349.700542086801	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5829	False	NA	-2	True	AGTAAA	-19	NA	46327092	46318978	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023303	chr19	-	1121	9	FSM	ENSMUSG00000036748.17	ENSMUST00000051234.9	1833	9	-16	728	-16	0	multi-exon	FALSE	canonical	3	390	junction_8	253.325599525591	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5806	False	NA	-2	True	AGTAAA	-19	NA	46327115	46318978	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46327007
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023307	chr19	-	1236	10	NIC	ENSMUSG00000036748.17	novel	1167	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	89	junction_9	387.049363617282	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5855	False	NA	-2	True	AGTAAA	-19	NA	46327066	46318978	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321138_46326751_46326870_46326958
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023343	chr19	-	137	1	ISM	ENSMUSG00000025228.6	ENSMUST00000040270.6	2757	11	18798	2	2551	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGTCTGACCTCTTTCT	NA	False	NA	-4	True	AATAAA	-17	NA	46365388	46365251	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_-_46365300_46365400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023358	chr19	+	1087	1	ISM	ENSMUSG00000047731.18	ENSMUST00000138302.9	3900	4	57219	0	32902	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTGCCGCTCCTTGTTC	8914	False	NA	24	True	AATAAA	-25	NA	46644741	46645828	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_+_46644700_46645800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023379	chr19	+	1167	2	ISM	ENSMUSG00000025049.7	ENSMUST00000026027.7	3260	11	14462	0	14462	0	3prime_fragment	FALSE	canonical	3	222	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTGTACAAATTGAGTA	2902	False	NA	15	True	AATAAA	-27	NA	47070646	47071918	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_+_47070761_47070865
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023385	chr19	-	462	5	NNC	ENSMUSG00000071528.5	novel	425	5	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2533.27548590752	216	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTGTCTTTATTTACA	NA	False	NA	0	True	AATAAA	-17	NA	47079092	47071902	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr19_-_47072009_47073211_47073298_47074393_47074487_47074572_47074669_47079011
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023403	chr19	+	1515	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	45	-48	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTCATTTTCCTCAT	NA	False	NA	20	True	ATTAAA	-26	NA	47720165	47723979	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr19_+_47720261_47721068_47721192_47721240_47721428_47721957_47722351_47723262
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023426	chr19	+	179	1	Intergenic	novelGene_169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGATGTGTGGTCTGGGT	6327	False	NA	NA	False	NA	NA	NA	53057743	53057922	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr19_+_53057700_53057900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023447	chr19	+	1914	10	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	35273	679	204	346	3prime_fragment	FALSE	canonical	3	1023	junction_2	88.2383136738231	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGCTTTCAGTTACTAG	934	False	NA	78	True	ATTAAA	-21	NA	53624101	53633585	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_+_53624254_53624811_53624971_53627128_53627237_53627757_53627867_53629192_53629441_53629528_53629742_53629955_53630148_53630291_53630470_53632274_53632382_53633137
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023457	chr19	-	777	4	FSM	ENSMUSG00000084957.4	ENSMUST00000236370.2	662	4	-21	-94	-18	0	multi-exon	FALSE	canonical	3	94	junction_3	45.8427263102398	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGGGCTTGTACACTAC	NA	False	NA	NA	False	AATAAA	-17	NA	53932680	53919440	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932586
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023465	chr19	-	2180	11	FSM	ENSMUSG00000024982.11	ENSMUST00000224897.2	2168	11	-4	-8	-4	8	multi-exon	FALSE	canonical	3	431	junction_6	59.8815497461447	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTTAGTTTGCTTTTT	7435	False	NA	1	True	AAAAAG	-3	NA	55304468	55286724	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023469	chr19	-	560	1	NIC	ENSMUSG00000024982.11	novel	3357	15	NA	NA	4218	8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTTTTCACCAAAAAGCAT	NA	False	NA	-18	True	AATAAA	-27	NA	55287303	55286743	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr19_-_55286700_55287300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023481	chr19	+	1753	1	Genic_Genomic	ENSMUSG00000033478.6	novel	NA	NA	NA	NA	26812	8	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTCGTATATTTTTGTA	NA	False	NA	10	True	AATAAA	-21	NA	57376273	57378026	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr19_+_57376300_57378000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023483	chr19	+	1667	8	FSM	ENSMUSG00000025086.14	ENSMUST00000026073.14	3789	8	27	2095	0	1893	multi-exon	FALSE	canonical	3	146	junction_6	27.9131305507436	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCCTGCCTGTTCGTT	NA	False	NA	13	True	ATTAAA	-2	NA	57441370	57477342	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57475696_57475754_57476440
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023488	chr19	+	378	1	ISM	ENSMUSG00000025086.14	ENSMUST00000026073.14	3789	8	35621	2095	35576	1893	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCCTGCCTGTTCGTT	NA	False	NA	13	True	ATTAAA	-2	NA	57476964	57477342	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr19_+_57477000_57477300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023495	chr19	+	514	1	FSM	ENSMUSG00000067038.7	ENSMUST00000086764.7	396	1	-83	-35	-83	35	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAGATCACAAGGTTTCA	NA	False	NA	NA	False	AATAAA	-32	NA	59310719	59311233	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr19_+_59310700_59311200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023518	chr19	+	2364	9	NIC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	-3	8	combination_of_known_junctions	FALSE	canonical	3	138	junction_1	88.7623230881211	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTGATGTCTTTTCATT	NA	False	NA	NA	False	ATTAAA	-21	NA	60800019	60824673	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr19_+_60800112_60803029_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023536	chr1_GL456212v1_random	+	214	1	Intergenic	novelGene_170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATCTATAAAACAGAAATGC	NA	False	NA	NA	False	NA	NA	NA	29062	29276	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr1_GL456212v1_random_+_29100_29300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023539	chr2	+	1789	14	FSM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	-2	2674	-2	5	multi-exon	TRUE	canonical	3	230	junction_10	26.4695873268632	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGTTGTTAACAATCAGAA	985	False	NA	15	True	AATAAA	-24	NA	3285246	3327240	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023555	chr2	-	1738	14	NNC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	-32	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	279.338377231062	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	3981	False	NA	-7	True	ATTAAA	-18	NA	3513812	3489888	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_-_3490091_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023576	chr2	+	1477	9	FSM	ENSMUSG00000026664.8	ENSMUST00000027975.8	1438	9	-24	-15	-24	15	multi-exon	FALSE	canonical	3	390	junction_4	31.960669188864	502	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTTTTTTAAGATTTA	967	False	NA	24	True	AATAAA	-35	NA	4923805	4943556	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935523_4935706_4940779_4940930_4942486_4942622_4943117
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023585	chr2	+	190	1	Intergenic	novelGene_171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAACGCTCCATGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	4973144	4973334	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_4973100_4973300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023588	chr2	-	3465	20	FSM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	29	0	-9	0	multi-exon	FALSE	canonical	3	560	junction_19	72.612354435182	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	0	True	AATAAA	-38	NA	5017573	4995534	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023594	chr2	-	2096	11	ISM	ENSMUSG00000026672.12	ENSMUST00000114996.8	2614	14	17845	0	-9003	0	3prime_fragment	FALSE	canonical	3	118	junction_4	15.7800506970035	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTATCTGATTTATT	NA	False	NA	0	True	AGTAAA	-17	NA	5051011	5025452	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023600	chr2	-	1508	13	FSM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	-46	365	-46	6	multi-exon	FALSE	canonical	3	980	junction_5	82.7531050105607	1104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTACTGTGATGGTTTGTA	NA	False	NA	-1	True	AATAAA	-21	NA	5850021	5799469	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023605	chr2	-	1272	13	NNC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-20	2	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	306.508790883539	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCCTACTGTGATGGTT	NA	False	NA	-5	True	AATAAA	-17	NA	5849772	5799473	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_-_5799692_5800342_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023622	chr2	+	1632	9	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	-18	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	239.550490502524	219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTGGGGGTTTTTTTGTT	1684	False	NA	NA	False	NA	NA	NA	5849811	5873554	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023650	chr2	-	2277	1	Genic_Genomic	ENSMUSG00000082332.3	novel	NA	NA	NA	NA	-112	416	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGCATGTAGATTAAAGTG	NA	False	NA	NA	False	AATAAA	-27	NA	6138879	6136602	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr2_-_6136600_6138900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023664	chr2	+	1410	5	FSM	ENSMUSG00000037262.8	ENSMUST00000042512.8	1472	5	-43	105	-12	-105	multi-exon	FALSE	canonical	3	38	junction_2	5.40832691319598	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTTATTTTATCTTTG	4782	False	NA	NA	False	AATAAA	-24	NA	10085391	10097512	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_10085556_10090540_10090636_10094923_10094968_10095051_10095175_10096528
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023670	chr2	-	705	5	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8801	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	256.084336693988	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGTTCATTCTGTTTT	NA	False	NA	-10	True	AATAAA	-17	NA	10370051	10344090	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10351924_10352011_10369968
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023692	chr2	-	2322	15	FSM	ENSMUSG00000026767.13	ENSMUST00000028105.13	2344	15	22	0	0	0	multi-exon	FALSE	canonical	3	102	junction_11	25.5990473355904	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424259	12352073	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023700	chr2	-	1607	9	FSM	ENSMUSG00000026727.11	ENSMUST00000028059.9	1546	9	-16	-45	-16	45	multi-exon	FALSE	canonical	3	310	junction_5	20.3588893361106	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGTGTGCACATTTTTT	7027	False	NA	0	True	AATAAA	-15	NA	13276242	13081777	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023720	chr2	+	215	1	Intergenic	novelGene_172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACTGAATTACCAAAAGC	NA	False	NA	NA	False	NA	NA	NA	17850486	17850701	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_17850500_17850700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023745	chr2	-	98	1	FSM	ENSMUSG00000083563.2	ENSMUST00000117219.2	1545	1	1518	-71	1518	71	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	NA	False	NA	NA	False	NA	NA	NA	22478141	22478043	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_22478000_22478100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023781	chr2	+	810	3	ISM	ENSMUSG00000026974.12	ENSMUST00000148042.3	1103	6	3037	-150	3037	150	3prime_fragment	FALSE	canonical	3	887	junction_2	9.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTCGTGTAGTCAAGCT	NA	False	NA	37	True	NA	NA	NA	24843258	24849428	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_24843389_24848047_24848229_24848929
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023796	chr2	+	570	1	FSM	ENSMUSG00000084383.2	ENSMUST00000121309.2	483	1	-35	-52	-35	52	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAATGTTAATAGCCACC	NA	False	NA	NA	False	AATAAA	-35	NA	24875960	24876530	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_24876000_24876500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023824	chr2	+	181	1	Intergenic	novelGene_173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGGGTGTTATGCAGCAAA	NA	False	NA	9	True	NA	NA	NA	25147475	25147656	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_25147500_25147700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023830	chr2	-	847	3	FSM	ENSMUSG00000026966.7	ENSMUST00000133697.2	845	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	46	junction_2	398.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGCTAGCTACCA	NA	False	NA	-6	True	AATAAA	-16	NA	25162424	25161050	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_25161594_25161940_25162141_25162320
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023850	chr2	-	1735	9	FSM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	19	1595	19	5	multi-exon	FALSE	canonical	3	362	junction_3	36.5288841192829	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTGTCTATTTTTTTGT	NA	False	NA	-10	True	NA	NA	NA	25255675	25251495	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255_25253397_25253817_25254012_25254112_25254286_25254523_25254700_25254892_25255098_25255338
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023865	chr2	-	1222	7	FSM	ENSMUSG00000015083.12	ENSMUST00000040042.11	1150	7	-72	0	-72	0	multi-exon	FALSE	canonical	3	9	junction_1	2.38047614284762	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTTGTCGTTTTTTGTC	NA	False	NA	-1	True	ATTAAA	-19	NA	25390697	25388662	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_25388836_25388916_25388956_25389025_25389128_25389409_25389518_25389600_25389672_25389850_25389988_25390105
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023873	chr2	+	749	5	FSM	ENSMUSG00000015092.10	ENSMUST00000015236.4	722	5	-15	-12	-15	12	multi-exon	FALSE	canonical	3	2396	junction_4	232.166965781095	1127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCCTCCCTGCCTTCTG	NA	False	NA	29	True	NA	NA	NA	25447843	25452106	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980_25451075_25451862
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023897	chr2	-	1697	10	FSM	ENSMUSG00000036352.17	ENSMUST00000036509.14	1852	10	157	-2	12	2	multi-exon	FALSE	canonical	3	686	junction_2	68.2632884002073	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTTACTTCATGGCAG	NA	False	NA	-1	True	AATAAA	-22	NA	25911602	25888552	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_25889080_25895337_25895477_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307_25906429_25911408
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023905	chr2	+	202	1	Intergenic	novelGene_174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGGAGGTGAGGTTGTG	NA	False	NA	NA	False	NA	NA	NA	26176901	26177103	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_26176900_26177100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023941	chr2	-	1157	3	Genic_Genomic	ENSMUSG00000097052.4	novel	139	1	NA	NA	-2259	679	multi-exon	FALSE	canonical	3	46	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTTTGCTGTCAGCAC	NA	False	NA	2	True	AATAAA	-24	NA	26530256	26527179	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr2_-_26528108_26529441_26529484_26530069
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023944	chr2	-	743	4	Intergenic	novelGene_175	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	46	junction_3	6.37704215656966	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGAATCTTTCTTTGCTG	NA	False	NA	-5	True	AATAAA	-17	NA	26530256	26527186	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_-_26527646_26528052_26528108_26529441_26529484_26530069
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023990	chr2	+	262	1	ISM	ENSMUSG00000014873.16	ENSMUST00000015017.8	1203	6	3555	0	2494	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATATGTGTATCATTGTT	NA	False	NA	37	True	CATAAA	-32	NA	26809933	26810195	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_26809900_26810200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023991	chr2	-	770	1	Genic_Genomic	ENSMUSG00000014867.10	novel	NA	NA	NA	NA	12576	2	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGTGGTCCTATATGGTG	NA	False	NA	0	True	AATAAA	-20	NA	26810819	26810049	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr2_-_26810000_26810800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000023995	chr2	-	2815	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	466	0	-79	0	multi-exon	TRUE	canonical	3	778	junction_1	38.262252939418	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGTGGTCCTATATGG	NA	False	NA	-2	True	AATAAA	-18	NA	26823474	26810051	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024025	chr2	+	237	1	Intergenic	novelGene_176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAACAACTAGGGAGCCGG	NA	False	NA	NA	False	NA	NA	NA	28495260	28495497	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_28495300_28495500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024031	chr2	+	1459	5	ISM	ENSMUSG00000026806.16	ENSMUST00000113853.3	3271	20	35252	0	18570	0	3prime_fragment	FALSE	canonical	3	109	junction_3	15.6744218394172	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGGACTCAGCAGAGAAA	NA	False	NA	18	True	AATAAA	-19	NA	28765722	28795583	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024042	chr2	+	862	6	NNC	ENSMUSG00000026799.16	novel	1254	8	NA	NA	-34404	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.9844427636972	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGCTCTGTGTTCTGCTT	5296	False	NA	29	True	AATAAA	-17	NA	29352118	29414802	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_29352235_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024098	chr2	+	2658	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	171	-5	171	5	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	3992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTCTCCTTGTTTTGTA	NA	False	NA	24	True	AATAAA	-29	NA	29952035	29962594	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024102	chr2	+	2120	5	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6637.28493060227	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGACTGGGGTCATTCT	NA	False	NA	12	True	AATAAA	-17	NA	29952110	29962582	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_29952293_29958280_29958339_29958971_29959053_29960452_29960600_29960930
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024114	chr2	+	1666	1	Genic_Genomic	ENSMUSG00000054766.14	novel	NA	NA	NA	NA	747	5	mono-exon	FALSE	NA	NA	NA	NA	NA	268	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTCTCCTTGTTTTGTA	NA	False	NA	24	True	AATAAA	-29	NA	29960928	29962594	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr2_+_29960900_29962600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024136	chr2	-	2029	11	FSM	ENSMUSG00000039660.17	ENSMUST00000144093.8	2010	11	8	-27	-1	7	multi-exon	FALSE	canonical	3	299	junction_5	40.8044115262063	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATGCTCACGTGACTGTA	NA	False	NA	-3	True	AATAAA	-40	NA	30068463	30063457	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067978_30068401
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024141	chr2	-	220	1	ISM	ENSMUSG00000039648.15	ENSMUST00000044038.10	1876	13	20504	0	8769	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTTCTCTCTTCCTTT	NA	False	NA	-3	True	AATAAA	-25	NA	30075355	30075135	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_30075100_30075400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024151	chr2	+	1309	11	ISM	ENSMUSG00000079484.13	ENSMUST00000113645.8	1325	12	88	0	-10	0	3prime_fragment	FALSE	canonical	2	39	junction_2	15.9185426468631	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	10005	False	NA	NA	False	AATAAA	-17	NA	30156820	30172160	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024183	chr2	+	1575	3	FSM	ENSMUSG00000039515.12	ENSMUST00000131476.8	989	3	88	-674	88	0	multi-exon	FALSE	canonical	3	6	junction_1	219	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTGTGAGACATCTTT	9457	False	NA	17	True	ATTAAA	-20	NA	30331952	30337817	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_30331991_30333301_30333410_30336388
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024185	chr2	+	899	1	ISM	ENSMUSG00000039515.12	ENSMUST00000042055.10	2586	10	30868	0	1191	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTGTGAGACATCTTT	NA	False	NA	17	True	ATTAAA	-20	NA	30336918	30337817	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_30336900_30337800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024189	chr2	+	1294	4	FSM	ENSMUSG00000026857.10	ENSMUST00000041830.10	1387	4	93	0	-22	0	multi-exon	FALSE	canonical	3	480	junction_2	33.3466640010661	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGTGTGGATGTATGT	NA	False	NA	27	True	AATAAA	-33	NA	30697930	30713045	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_30698096_30709640_30709845_30710460_30710714_30712373
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024195	chr2	+	1170	4	FSM	ENSMUSG00000026857.10	ENSMUST00000138889.8	1192	4	27	-5	11	5	multi-exon	FALSE	canonical	3	90	junction_2	216.499422632025	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCCAGGCAGTCTGTGTG	NA	False	NA	16	True	AATAAA	-22	NA	30697979	30713034	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_30698096_30709640_30709781_30710460_30710714_30712373
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024204	chr2	-	1344	3	FSM	ENSMUSG00000050737.14	ENSMUST00000102852.6	3647	3	-6	2309	-6	502	multi-exon	FALSE	canonical	3	78	junction_1	10.5	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCGGTGTCTAAGACCCA	8405	False	NA	NA	False	ATTAAA	-22	NA	30793315	30781791	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_30782839_30790878_30790962_30793101
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024211	chr2	-	1408	5	FSM	ENSMUSG00000026849.19	ENSMUST00000028200.9	1401	5	-1	-6	-1	6	multi-exon	FALSE	canonical	0	0	junction_3	220.841996685413	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGTGTCTTTTGAAA	NA	False	NA	-2	True	TTTAAA	-36	NA	30857946	30850632	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101_30857368_30857685
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024244	chr2	+	209	1	Intergenic	novelGene_177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCCTAGGAGTCAATTAGT	NA	False	NA	NA	False	NA	NA	NA	31421594	31421803	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_31421600_31421800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024250	chr2	+	1928	9	FSM	ENSMUSG00000039356.16	ENSMUST00000038474.14	1686	9	-10	-232	-10	232	multi-exon	FALSE	canonical	3	842	junction_6	46.6797600679352	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTTCTGATGCTCTGAT	NA	False	NA	NA	False	AATAAA	-16	NA	31560716	31571593	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024253	chr2	+	1662	9	NIC	ENSMUSG00000039356.16	novel	1686	9	NA	NA	-6	-24	combination_of_known_junctions	FALSE	canonical	3	21	junction_2	302.080054579908	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAATAAAGGGAGGTAGCA	NA	False	NA	NA	False	NA	NA	NA	31560739	31571337	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_+_31560874_31562483_31562599_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024278	chr2	-	783	5	FSM	ENSMUSG00000044627.12	ENSMUST00000050410.11	775	5	3	-11	-3	11	multi-exon	FALSE	canonical	3	3309	junction_1	124.51380445557	923	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTCTCTACTAGCCCG	NA	False	NA	-1	True	AATAAA	-25	NA	32178084	32168816	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024307	chr2	+	1637	6	FSM	ENSMUSG00000079442.13	ENSMUST00000102818.11	3626	6	-7	1996	-7	1	multi-exon	FALSE	canonical	3	25	junction_4	7.22218803410712	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTCTCTGTGGTAAC	NA	False	NA	8	True	NA	NA	NA	32477099	32487714	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_32477240_32477592_32477694_32479456_32479643_32484001_32484415_32485705_32485814_32487025
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024309	chr2	+	197	1	ISM	ENSMUSG00000026811.19	ENSMUST00000095044.10	2394	7	13584	0	11567	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTTCTGTGTCTTTA	NA	False	NA	7	True	AATAAA	-16	NA	32510621	32510818	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_32510600_32510800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024323	chr2	-	131	1	ISM	ENSMUSG00000009555.17	ENSMUST00000125058.8	3565	5	3479	1654	2153	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGCGTTTCCTGTGTTC	NA	False	NA	NA	False	ATTAAA	-25	NA	32597580	32597449	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_32597400_32597600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024328	chr2	+	1532	5	FSM	ENSMUSG00000009563.17	ENSMUST00000009707.14	1536	5	10	-6	-1	6	multi-exon	FALSE	canonical	3	200	junction_1	20.9105236663265	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGTTTCTTACTGTCCT	599	False	NA	15	True	AATAAA	-26	NA	32647255	32652262	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_32647463_32648682_32648949_32649538_32649715_32650600_32650729_32651507
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024339	chr2	-	187	1	Intergenic	novelGene_178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCCAGAGGTGGTGTATA	NA	False	NA	NA	False	NA	NA	NA	32743906	32743719	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_-_32743700_32743900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024357	chr2	+	1066	6	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	-6	0	intron_retention	FALSE	canonical	3	2580	junction_5	1481.81753262674	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	24	True	AATAAA	-23	NA	32851725	32854057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853596_32853752_32853866_32854002
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024358	chr2	+	1223	5	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	-6	0	intron_retention	FALSE	canonical	3	2580	junction_4	1523.82780769351	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	24	True	AATAAA	-23	NA	32851725	32854057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853866_32854002
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024359	chr2	+	625	7	NNC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	-6	0	at_least_one_novel_splicesite	TRUE	canonical	1	13	junction_5	2460.30633255292	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	24	True	AATAAA	-23	NA	32851725	32854057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853763_32853866_32854002
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024363	chr2	+	1360	4	FSM	ENSMUSG00000038900.18	ENSMUST00000125415.3	600	4	-26	-734	-6	0	multi-exon	FALSE	canonical	3	5241	junction_1	528.984771887517	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	24	True	AATAAA	-23	NA	32851725	32854057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024370	chr2	+	1481	4	ISM	ENSMUSG00000038900.18	ENSMUST00000102811.10	729	7	-26	-2	-6	0	intron_retention	FALSE	canonical	3	310	junction_1	2822.92358301736	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	24	True	AATAAA	-23	NA	32851725	32854057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024371	chr2	+	1344	5	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	-6	0	intron_retention	FALSE	canonical	3	310	junction_1	2554.7315416693	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	24	True	AATAAA	-23	NA	32851725	32854057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853866_32854002
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024372	chr2	+	1187	6	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	-6	0	intron_retention	FALSE	canonical	3	310	junction_1	2525.09163398083	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	24	True	AATAAA	-23	NA	32851725	32854057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853596_32853752_32853866_32854002
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024378	chr2	+	1275	5	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	-6	0	intron_retention	FALSE	canonical	3	2580	junction_4	1654.68310787897	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	24	True	AATAAA	-23	NA	32851725	32854057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_+_32852135_32852585_32852685_32852996_32853596_32853752_32853866_32854002
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024379	chr2	+	845	6	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	-6	0	intron_retention	FALSE	canonical	3	2580	junction_5	1584.70918467711	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	24	True	AATAAA	-23	NA	32851725	32854057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_+_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024380	chr2	+	1432	4	FSM	ENSMUSG00000038900.18	ENSMUST00000154340.8	1417	4	-15	0	-6	0	multi-exon	FALSE	canonical	3	2580	junction_3	1756.95310757636	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	24	True	AATAAA	-23	NA	32851725	32854057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_32852135_32852585_32852685_32852996_32853866_32854002
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024403	chr2	-	748	1	Genic_Genomic	ENSMUSG00000026791.15	novel	NA	NA	NA	NA	8284	4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTGGAGCCAGAAGTC	NA	False	NA	-9	True	AATAAA	-19	NA	32863745	32862997	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr2_-_32863000_32863700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024414	chr2	-	1672	3	NNC	ENSMUSG00000087461.3	novel	2668	4	NA	NA	80959	-903	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	1	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTGTTTACCCTCAAGA	NA	False	NA	NA	False	NA	NA	NA	33916782	33909203	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_-_33910509_33915810_33915970_33916574
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024423	chr2	+	2535	9	FSM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	121	1016	-4	0	multi-exon	FALSE	canonical	3	1920	junction_1	305.196632312678	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	False	NA	18	True	ACTAAA	-14	NA	34662102	34666543	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024425	chr2	+	2617	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	-4	0	-4	0	multi-exon	FALSE	canonical	3	2314	junction_3	220.40537791135	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	False	NA	18	True	ACTAAA	-14	NA	34662102	34666543	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024447	chr2	-	1054	4	ISM	ENSMUSG00000035949.16	ENSMUST00000113078.8	1872	6	12064	0	-2454	0	3prime_fragment	FALSE	canonical	3	277	junction_3	19.5106808355492	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTTCTTTGAAATTG	NA	False	NA	-3	True	ATTAAA	-15	NA	34701129	34695349	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024459	chr2	-	1073	1	ISM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	19843	0	2773	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGCATTATTTTTGA	NA	False	NA	NA	False	AATAAA	-26	NA	35071289	35070216	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_35070200_35071300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024478	chr2	-	1837	1	ISM	ENSMUSG00000026889.13	ENSMUST00000028251.10	2617	6	18858	0	18661	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGTCTTATTGTCT	NA	False	NA	-23	True	AATAAA	-16	NA	36007927	36006090	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_36006100_36007900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024526	chr2	+	123	1	Intergenic	novelGene_179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAATTGAAGAAGATC	NA	False	NA	NA	False	ATTAAA	-31	NA	40447334	40447457	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_40447300_40447500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024529	chr2	+	536	3	Intergenic	novelGene_180	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	22	junction_2	1.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTAGATAGAGCATGAAGA	NA	False	NA	NA	False	NA	NA	NA	43085690	43086577	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_43085874_43086137_43086229_43086315
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024536	chr2	+	1000	2	FSM	ENSMUSG00000086202.2	ENSMUST00000134308.2	424	2	-195	-381	0	1	multi-exon	FALSE	canonical	3	37	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTCTTTATATCAGAT	NA	False	NA	NA	False	ATTAAA	-18	NA	45586616	45588460	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_45587155_45587998
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024539	chr2	-	1697	14	FSM	ENSMUSG00000026761.13	ENSMUST00000028098.11	4066	14	23	2346	-12	146	multi-exon	FALSE	canonical	3	352	junction_6	44.7134201423734	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATGTGGTCCATTAGAA	NA	False	NA	-3	True	CATAAA	-22	NA	48839265	48795181	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024580	chr2	-	983	1	ISM	ENSMUSG00000036249.17	ENSMUST00000102767.8	2057	5	9577	0	1596	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAGCTGCATCATTATT	NA	False	NA	NA	False	ATTAAA	-1	NA	51815442	51814459	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_51814500_51815400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024623	chr2	-	1022	6	FSM	ENSMUSG00000060703.13	ENSMUST00000074606.11	1354	6	337	-5	267	5	multi-exon	FALSE	canonical	3	68	junction_2	6.41872261435249	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGGTCTTCTTTGTTA	4269	False	NA	1	True	AATAAA	-20	NA	60114495	60082331	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_60082836_60085414_60085442_60087376_60087548_60088226_60088344_60102445_60102557_60114403
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024632	chr2	+	578	3	FSM	ENSMUSG00000087283.2	ENSMUST00000131457.2	566	3	-17	5	-17	-5	multi-exon	FALSE	canonical	3	174	junction_2	3	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGTGTGGTGGTATACC	9329	False	NA	NA	False	NA	NA	NA	60241851	60242918	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_60242062_60242190_60242353_60242712
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024637	chr2	+	198	1	Intergenic	novelGene_181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAACACCAGATTTCGA	NA	False	NA	NA	False	NA	NA	NA	60325242	60325440	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_60325200_60325400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024640	chr2	+	1614	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	-69	-4	-69	4	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	1678	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGAGGTCTTTTTGGCAC	8478	False	NA	35	True	AATAAA	-21	NA	61541968	61630724	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024665	chr2	+	202	1	Intergenic	novelGene_182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGGCTGGTGAGATGGC	NA	False	NA	NA	False	NA	NA	NA	65150282	65150484	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_65150300_65150500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024680	chr2	+	226	1	Intergenic	novelGene_183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATGTGCAAAGATGAAGG	4022	False	NA	NA	False	NA	NA	NA	69398516	69398742	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_69398500_69398700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024682	chr2	+	1449	12	FSM	ENSMUSG00000063145.11	ENSMUST00000074963.9	1468	12	19	0	-3	0	multi-exon	FALSE	canonical	3	71	junction_4	9.81144550053239	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATGTTTTGAAAGTATTA	NA	False	NA	6	True	AATAAA	-20	NA	69477570	69497915	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69484457_69484589_69484718_69485842_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024684	chr2	+	2725	14	FSM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	5	3397	5	1067	multi-exon	TRUE	canonical	3	282	junction_1	41.7748260879032	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTGGTGTAATACTGTG	NA	False	NA	NA	False	AATAAA	-23	NA	69553153	69580959	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024688	chr2	+	1346	1	ISM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	26467	3395	7603	1069	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGTGTAATACTGTGTG	NA	False	NA	NA	False	AATAAA	-25	NA	69579615	69580961	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_69579600_69581000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024691	chr2	+	2239	4	FSM	ENSMUSG00000027088.11	ENSMUST00000028494.9	2260	4	21	0	-3	0	multi-exon	FALSE	canonical	3	95	junction_2	4.49691252107735	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCTTCTGAAATCTTTT	NA	False	NA	26	True	AATAAA	-16	NA	69620000	69627567	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_69620301_69620629_69620666_69622680_69622836_69625819
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024706	chr2	+	706	1	ISM	ENSMUSG00000068882.14	ENSMUST00000166411.8	2088	12	9579	0	2362	0	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTCACTTTGGACATA	NA	False	NA	22	True	ATTAAA	-23	NA	69701484	69702190	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_69701500_69702200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024725	chr2	+	212	1	Intergenic	novelGene_184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAATAACCAAGGAACAGAA	6676	False	NA	NA	False	NA	NA	NA	69757196	69757408	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_69757200_69757400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024729	chr2	+	1215	9	FSM	ENSMUSG00000014959.13	ENSMUST00000112205.2	1196	9	-19	0	-5	0	multi-exon	FALSE	canonical	3	630	junction_6	27.9463772249642	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGAGGCCTCCCGTTCAGTC	NA	False	NA	9	True	AATAAA	-18	NA	70491914	70519704	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024736	chr2	-	2350	10	FSM	ENSMUSG00000041975.18	ENSMUST00000112186.9	2347	10	-3	0	-3	0	multi-exon	FALSE	canonical	3	72	junction_7	14.8332292963476	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGTTGGAGTTTT	NA	False	NA	0	True	NA	NA	NA	70885930	70794904	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812540_70823827_70823920_70848563_70848719_70885714
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024761	chr2	+	1455	1	Intergenic	novelGene_185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACTTCCATTCTGAAGCA	NA	False	NA	NA	False	AAAAAG	-19	NA	71178306	71179761	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_71178300_71179800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024764	chr2	+	1617	11	FSM	ENSMUSG00000027018.12	ENSMUST00000028408.3	1576	11	-89	48	-89	-48	multi-exon	FALSE	canonical	3	1873	junction_8	150.054156890104	4622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATAATGTGGTGCTTAAG	5029	False	NA	11	True	AATAAA	-22	NA	71219514	71271918	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024775	chr2	+	1497	11	NNC	ENSMUSG00000027018.12	novel	1576	11	NA	NA	693	-107	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_4	873.793247856723	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGCCCACTGCTTTCTT	5811	False	NA	17	True	AATAAA	-18	NA	71220296	71271859	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_71220343_71239331_71239408_71240486_71240608_71242206_71242330_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024785	chr2	+	1242	4	ISM	ENSMUSG00000027111.17	ENSMUST00000112101.8	4156	26	59045	0	-3044	0	3prime_fragment	FALSE	canonical	3	515	junction_3	29.2612751298063	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCTTTATAAACATGCAAG	NA	False	NA	NA	False	NA	NA	NA	71676328	71687115	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_71676428_71676507_71676607_71679724_71679851_71686197
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024788	chr2	+	2420	9	FSM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	3	1	3	-1	multi-exon	FALSE	canonical	3	1115	junction_3	87.0351042683353	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8572	False	NA	NA	False	AATAAA	-15	NA	72306505	72317236	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024792	chr2	+	755	1	ISM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	9979	1	1031	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	72316481	72317236	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_72316500_72317200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024815	chr2	-	1918	9	NIC	ENSMUSG00000041777.13	novel	2821	10	NA	NA	-1	-759	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	29.521178838251	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCCTTAAGACTTTAAAAG	NA	False	NA	NA	False	AATAAA	-21	NA	73142912	73114207	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233_73136283_73136620_73136686_73137198_73137273_73140800_73140896_73142760
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024823	chr2	+	1082	5	ISM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	58	15347	0	449	5prime_fragment	FALSE	canonical	3	52	junction_4	23.0475052879916	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTTTGTTTGTTTGTAT	NA	False	NA	NA	False	ATTAAA	-22	NA	73143002	73152815	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646_73149844_73152328
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024840	chr2	-	217	1	ISM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	2662	0	1796	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73739007	73738790	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_73738800_73739000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024881	chr2	-	665	4	FSM	ENSMUSG00000056436.5	ENSMUST00000028430.6	655	4	-10	0	-10	0	multi-exon	FALSE	canonical	3	132	junction_3	45.146674542232	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCGTTATGTTTATGA	NA	False	NA	1	True	AATAAA	-30	NA	76190804	76184285	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_76184581_76186423_76186617_76187916_76187946_76190656
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024919	chr2	+	1775	9	FSM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	-4	-212	-4	208	multi-exon	FALSE	canonical	3	149	junction_4	57.0169930810105	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAGTTTGTTAATATG	NA	False	NA	NA	False	AATAAA	-16	NA	80469155	80489458	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024925	chr2	+	1682	1	FSM	ENSMUSG00000064193.9	ENSMUST00000138679.2	1302	1	-47	-333	-47	333	mono-exon	FALSE	NA	NA	NA	NA	NA	315	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCTAAATTAGAGATACC	NA	False	NA	8	True	AATAAA	-28	NA	80667437	80669119	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_80667400_80669100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024941	chr2	-	1338	9	NIC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_8	41.6863286941894	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84307107	84263198	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024966	chr2	-	2047	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	-64	-6	-2	5	multi-exon	FALSE	canonical	3	1517	junction_2	94.3986336808766	588	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTTTTTCCTTTACTA	5227	False	NA	-2	True	AATAAA	-22	NA	84508464	84501654	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000024981	chr2	-	1032	1	ISM	ENSMUSG00000027079.16	ENSMUST00000165219.8	2564	4	3089	1018	3089	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTATGATTCTTTTTTT	NA	False	NA	-21	True	AATAAA	-17	NA	84554497	84553465	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_84553500_84554500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025002	chr2	+	279	1	ISM	ENSMUSG00000027076.11	ENSMUST00000028470.10	690	3	2938	0	2551	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGTGTCTTTACTTGAGA	1205	False	NA	10	True	ATTAAA	-15	NA	84660278	84660557	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_84660300_84660600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025011	chr2	+	2423	13	NIC	ENSMUSG00000027074.15	novel	2621	6	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	9.67923034130297	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGCTTCTACCTCTTTG	NA	False	NA	9	True	AATAAA	-20	NA	84766962	84788853	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_+_84766989_84767866_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025030	chr2	-	1956	4	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-13	3	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	7.40870359029762	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATTTATTTATTTA	NA	False	NA	-4	True	AATAAA	-19	NA	87327256	87319427	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_-_87320426_87321167_87321750_87322478_87322789_87327190
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025068	chr2	+	2418	4	FSM	ENSMUSG00000005505.13	ENSMUST00000090682.4	2437	4	19	0	-7	0	multi-exon	FALSE	canonical	3	67	junction_2	4.10960933531265	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCTGTGTTGACT	2357	False	NA	NA	False	AATAAA	-42	NA	90735105	90740905	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_90735254_90736009_90736628_90737888_90737996_90739360
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025132	chr2	-	963	4	ISM	ENSMUSG00000027239.15	ENSMUST00000111309.8	771	5	-30	16	-19	7	intron_retention	FALSE	canonical	3	2268	junction_3	242.697342383472	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTCTTTTTTAATATATAA	NA	False	NA	NA	False	AATAAA	-26	NA	91762063	91760165	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025163	chr2	-	2861	14	FSM	ENSMUSG00000027198.17	ENSMUST00000028623.13	2871	14	10	0	-5	0	multi-exon	TRUE	canonical	3	390	junction_9	31.3157237855525	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTCTAGAATGCTGGT	NA	False	NA	-11	True	ATTAAA	-19	NA	93652903	93525975	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93652731
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025184	chr2	-	1852	11	FSM	ENSMUSG00000027195.11	ENSMUST00000028619.5	1902	11	50	0	-5	0	multi-exon	TRUE	canonical	3	670	junction_5	45.0653969249135	275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATTTTTGATAGTGGAA	NA	False	NA	NA	False	AATAAA	-31	NA	93988259	93863033	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025194	chr2	-	3711	14	FSM	ENSMUSG00000027193.13	ENSMUST00000028617.7	3736	14	-20	45	-20	-45	multi-exon	FALSE	canonical	3	777	junction_1	163.356364354585	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTCTTAATGTGTTA	NA	False	NA	-1	True	AATAAA	-19	NA	94268501	94242071	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_94244127_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025204	chr2	+	1195	6	FSM	ENSMUSG00000027163.14	ENSMUST00000028584.8	1191	6	-3	-1	-3	1	multi-exon	FALSE	canonical	3	160	junction_2	9.72830920561225	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCTGGTCGTGGTTCTTT	NA	False	NA	30	True	AATAAA	-26	NA	101716594	101731992	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_101716665_101725479_101725606_101727384_101727525_101729212_101729248_101730213_101730318_101731272
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025210	chr2	-	2485	11	FSM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	27	-6	-24	6	multi-exon	FALSE	canonical	3	314	junction_1	20.370567002418	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATGACATGCAAAATAGAAG	NA	False	NA	NA	False	AATAAA	-21	NA	102903831	102851413	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025214	chr2	-	1100	5	FSM	ENSMUSG00000010914.11	ENSMUST00000111183.2	2078	5	-13	991	-13	-991	multi-exon	FALSE	canonical	3	362	junction_1	7.44983221287567	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGAGTATGTGCGCTTG	NA	False	NA	NA	False	NA	NA	NA	102903820	102870954	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025247	chr2	+	2763	11	NIC	ENSMUSG00000027180.13	novel	4740	11	NA	NA	-10	5	combination_of_known_junctions	FALSE	canonical	3	77	junction_10	96.8347045227072	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCTCAACTGTATTTATT	NA	False	NA	5	True	NA	NA	NA	103858178	103887840	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103886345
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025265	chr2	+	1209	4	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	-1	116	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	198.704694347052	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTGTGTTAATGTCAT	NA	False	NA	28	True	AAGAAA	-24	NA	104389522	104399293	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_104389552_104390068_104390321_104398205_104398836_104398995
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025280	chr2	+	1248	4	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	-2	116	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	214.187353086549	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTGTGTTAATGTCAT	NA	False	NA	28	True	AAGAAA	-24	NA	104389526	104399293	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_104389595_104390068_104390321_104398205_104398836_104398995
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025281	chr2	+	1408	3	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	-2	116	intron_retention	FALSE	canonical	3	58	junction_1	259.5	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTGTGTTAATGTCAT	NA	False	NA	28	True	AAGAAA	-24	NA	104389526	104399293	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_104389595_104390068_104390321_104398205
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025306	chr2	+	2831	21	FSM	ENSMUSG00000027176.9	ENSMUST00000028599.8	2817	21	-18	4	-18	-4	multi-exon	TRUE	canonical	3	179	junction_7	45.0891062231222	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCCTCCTGTTTCTTTG	6882	False	NA	15	True	AATAAA	-16	NA	104420849	104495770	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_104421048_104439215_104439318_104439435_104439532_104474633_104474667_104475323_104475422_104476744_104476812_104476953_104476989_104477068_104477196_104478514_104478593_104479797_104479961_104481986_104482097_104482789_104482907_104483348_104483424_104484505_104484650_104486033_104486137_104489610_104489681_104490863_104491060_104493638_104493793_104494413_104494509_104494641_104494703_104495061
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025317	chr2	+	178	1	Intergenic	novelGene_186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCATTCATTGAGAGAGG	NA	False	NA	NA	False	NA	NA	NA	104717904	104718082	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_104717900_104718100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025341	chr2	-	1296	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	285	-384	-1	384	multi-exon	TRUE	canonical	3	201	junction_2	6.37867541108654	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGAGCCCAGTTCTGCCC	NA	False	NA	NA	False	NA	NA	NA	105833609	105796669	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025368	chr2	+	2629	1	ISM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	7522	0	7505	0	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGGGGTAATGTGGTTG	NA	False	NA	31	True	AGTAAA	-21	NA	109728719	109731348	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_109728700_109731300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025375	chr2	+	214	1	Intergenic	novelGene_187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAAAGTATTAAGGTAGCC	NA	False	NA	NA	False	NA	NA	NA	111927804	111928018	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_111927800_111928000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025398	chr2	+	903	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	37	-4725	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_1	188.575415948103	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGATTATCTTCTGTTT	397	False	NA	4	True	ATTAAA	-17	NA	112285378	112297782	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_112285485_112289804_112289925_112293145_112293285_112295081_112295163_112297325
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025404	chr2	+	267	1	ISM	ENSMUSG00000055943.6	ENSMUST00000069747.6	5826	5	12174	4725	12174	-4725	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGATTATCTTCTGTTT	NA	False	NA	4	True	ATTAAA	-17	NA	112297515	112297782	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_112297500_112297800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025413	chr2	-	1362	2	FSM	ENSMUSG00000040321.4	ENSMUST00000050668.4	4300	2	29	2909	0	2190	multi-exon	FALSE	canonical	3	9	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAGAAAACTCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	114031921	114026850	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_114028109_114031817
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025417	chr2	-	2710	9	FSM	ENSMUSG00000057147.14	ENSMUST00000102542.10	2734	9	28	-4	17	0	multi-exon	FALSE	canonical	3	190	junction_3	18.9670767383907	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTGTGAATGTCAGTT	NA	False	NA	-2	True	NA	NA	NA	114485417	114346896	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_114348774_114350192_114350281_114353524_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025442	chr2	+	1133	10	NNC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	35	313	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	69.6920917631333	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCCTGAGATCATAGAAC	NA	False	NA	NA	False	NA	NA	NA	118692469	118707760	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118707622
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025477	chr2	-	1239	12	NNC	ENSMUSG00000034278.4	novel	1008	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	116.975733868395	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTACTTTTCTTCCTCTTG	NA	False	NA	-4	True	AATAAA	-15	NA	119039276	119002980	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_-_119003167_119005391_119005623_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011451_119014079_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025483	chr2	-	805	4	FSM	ENSMUSG00000027317.9	ENSMUST00000076084.6	787	4	-18	0	-18	0	multi-exon	FALSE	canonical	3	35	junction_3	4.96655480858378	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGAGTGTGGTGTGTAT	NA	False	NA	NA	False	GATAAA	-18	NA	119060405	119048599	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119060022
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025493	chr2	-	436	1	ISM	ENSMUSG00000034226.8	ENSMUST00000037360.8	1703	3	1636	0	1636	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTGGTCTCCT	NA	False	NA	-5	True	AATAAA	-17	NA	119100117	119099681	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_119099700_119100100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025513	chr2	+	1355	3	FSM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	26	0	20	0	multi-exon	FALSE	canonical	3	71	junction_2	178.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTTGGACAGATTTT	NA	False	NA	NA	False	TATAAA	-29	NA	119424803	119431227	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_119424916_119426739_119426824_119430068
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025523	chr2	+	2183	11	FSM	ENSMUSG00000027306.16	ENSMUST00000068225.15	2960	11	402	375	6	-375	multi-exon	FALSE	canonical	3	927	junction_3	141.2501327433	256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTAAGCGTAAGTTGC	NA	False	NA	20	True	AATAAA	-23	NA	119449180	119480266	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119464200_119464300_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025604	chr2	-	1433	10	ISM	ENSMUSG00000033526.17	ENSMUST00000150081.8	2485	18	-25	6695	-3	-5	5prime_fragment	TRUE	canonical	3	56	junction_9	18.8017598335769	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTTAAAATGATTCAAAAG	NA	False	NA	NA	False	TTTAAA	-2	NA	121185817	121177533	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025639	chr2	+	619	4	FSM	ENSMUSG00000027245.12	ENSMUST00000126764.2	961	4	118	224	-43	12	multi-exon	FALSE	canonical	3	4276	junction_2	190.202231556017	1024	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTGTGTGTGATTCCTC	NA	False	NA	24	True	TATAAA	-32	NA	121287561	121288929	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_121287773_121288126_121288183_121288472_121288525_121288629
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025662	chr2	-	1472	11	ISM	ENSMUSG00000027233.5	ENSMUST00000028665.5	2434	18	60064	0	60064	0	3prime_fragment	FALSE	canonical	3	37	junction_10	25.8797217913949	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTGTTGCCAGACTTT	NA	False	NA	0	True	AATAAA	-20	NA	121956606	121950588	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_121950930_121951640_121951790_121952264_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750_121955872_121956199_121956354_121956581
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025668	chr2	+	878	4	FSM	ENSMUSG00000060802.9	ENSMUST00000102476.5	860	4	-1	-17	-1	17	multi-exon	FALSE	canonical	3	168	junction_2	12.4721912892465	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGCCAGACATTGCCAG	NA	False	NA	NA	False	NA	NA	NA	121978165	121983581	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_121978286_121981353_121981633_121982127_121982157_121983131
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025672	chr2	+	1916	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	1	4	combination_of_known_splicesites	FALSE	canonical	3	63	junction_2	27.6450718935582	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTCTCAAAGTGATTATA	1946	False	NA	NA	False	AATAAA	-19	NA	122016753	122036882	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122035291
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025674	chr2	+	1972	6	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	7	4	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	38.5725290848293	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTCTCAAAGTGATTATA	1952	False	NA	NA	False	AATAAA	-19	NA	122016759	122036882	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_+_122016834_122016944_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025678	chr2	+	172	1	FSM	ENSMUSG00000070692.7	ENSMUST00000117447.2	399	1	254	-27	254	27	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCACAGACATGGCTAC	NA	False	NA	6	True	AATAAA	-27	NA	122050727	122050899	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_122050700_122050900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025709	chr2	+	354	1	ISM	ENSMUSG00000027203.16	ENSMUST00000082122.14	1020	7	10189	16	9479	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGATTTTACATAAACTGA	NA	False	NA	16	True	AATAAA	-17	NA	125099298	125099652	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_125099300_125099700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025722	chr2	+	1794	10	FSM	ENSMUSG00000027207.16	ENSMUST00000094604.9	1928	10	134	0	-2	0	multi-exon	FALSE	canonical	3	86	junction_4	15.4040238449986	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTGCTCTTGAATG	NA	False	NA	8	True	ATTAAA	-15	NA	125708160	125825507	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_125708306_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025727	chr2	+	1168	4	NIC	ENSMUSG00000023330.13	novel	1342	5	NA	NA	31	1	combination_of_known_splicesites	FALSE	canonical	3	21	junction_2	74.5534856477028	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCGCCCTTACCTTTCGA	7310	False	NA	26	True	ATTAAA	-24	NA	125994091	126007197	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_+_125994135_125996465_125996781_126001689_126001949_126006646
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025732	chr2	+	207	1	Intergenic	novelGene_188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAAATTCTGATCAGAT	NA	False	NA	NA	False	NA	NA	NA	126431354	126431561	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_126431400_126431600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025746	chr2	-	234	1	Intergenic	novelGene_189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAACATTAACTTTAGTTT	NA	False	NA	NA	False	NA	NA	NA	126521094	126520860	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_-_126520900_126521100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025794	chr2	+	84	1	ISM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	16681	2843	3870	131	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACATGGTATATAGCTGTG	NA	False	NA	27	True	AATAAA	-24	NA	127445822	127445906	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_127445800_127445900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025797	chr2	+	620	1	ISM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	18988	0	6177	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTCCAATAACTTGGC	NA	False	NA	7	True	AATAAA	-18	NA	127448129	127448749	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_127448100_127448700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025808	chr2	-	818	2	FSM	ENSMUSG00000051319.7	ENSMUST00000135091.2	800	2	-12	-6	-12	6	multi-exon	FALSE	canonical	3	537	junction_1	0	368	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGCCTTGGTTATTTAT	NA	False	NA	1	True	GATAAA	-20	NA	127634420	127633301	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_127633753_127634053
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025818	chr2	-	419	1	ISM	ENSMUSG00000027387.12	ENSMUST00000028866.9	1624	9	17391	0	17391	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTTCATACTTGATT	NA	False	NA	1	True	AATAAA	-22	NA	128768606	128768187	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_128768200_128768600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025840	chr2	-	1243	8	FSM	ENSMUSG00000027404.17	ENSMUST00000147570.3	1133	8	37	-147	-32	-5	multi-exon	TRUE	canonical	3	49	junction_6	1649.031750539	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATATATTCATTTGTCT	NA	False	NA	-16	True	AATAAA	-23	NA	130021286	130013559	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018548_130018673_130018934_130019087_130021153
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025881	chr2	-	1526	12	FSM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	90	0	4	0	multi-exon	FALSE	canonical	3	745	junction_6	49.1089192551946	588	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTGTGTTTTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	130126377	130121228	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025895	chr2	+	1046	3	FSM	ENSMUSG00000037740.9	ENSMUST00000046149.9	1057	3	11	0	11	0	multi-exon	FALSE	canonical	3	543	junction_1	21	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCCATTTACTGGCT	396	False	NA	14	True	NA	NA	NA	130405672	130407314	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_130405911_130406000_130406352_130406857
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025908	chr2	-	220	1	ISM	ENSMUSG00000068290.12	ENSMUST00000089559.11	1238	9	10409	71	527	4	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTTGTTTGTAGAAGAC	NA	False	NA	0	True	ATTAAA	-20	NA	130496170	130495950	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_130496000_130496200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025920	chr2	-	1324	6	FSM	ENSMUSG00000027327.17	ENSMUST00000103188.10	1241	6	-68	-15	-7	14	multi-exon	FALSE	canonical	3	656	junction_1	33.1336686770421	636	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGGGGTTTTTTGTTCTCT	NA	False	NA	0	True	AATAAA	-29	NA	131002008	130988229	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995513_130995631_131001872
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025947	chr2	-	1596	4	FSM	ENSMUSG00000027341.11	ENSMUST00000028816.9	1612	4	19	-3	0	3	multi-exon	FALSE	canonical	3	556	junction_2	26.7332502076846	429	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTTGTTATTGATTTT	4889	False	NA	1	True	TATAAA	-23	NA	132089708	132081408	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089492
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025958	chr2	-	1461	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	57	0	57	0	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	905	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGTTGTGCAAAGTTTTC	8282	False	NA	-10	True	AATAAA	-27	NA	132095177	132091081	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025989	chr2	+	422	5	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	252.149137416728	95	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488442	135493987	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493417_135493478_135493766
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025990	chr2	+	386	5	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	4	at_least_one_novel_splicesite	FALSE	canonical	3	337	junction_4	128.141523324799	72	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488442	135493987	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493417_135493442_135493766
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025991	chr2	+	316	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	4	at_least_one_novel_splicesite	FALSE	canonical	3	137	junction_2	130.516920997496	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488442	135493987	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_135488469_135490846_135490892_135493417_135493442_135493766
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025992	chr2	+	556	6	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	272.981024981591	72	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488442	135493987	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135492537_135492672_135493417_135493478_135493766
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025993	chr2	+	352	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	189.688048003968	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488442	135493987	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_135488469_135490846_135490892_135493417_135493478_135493766
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000025999	chr2	+	711	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	4	intron_retention	FALSE	canonical	3	453	junction_1	106.871677986057	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488442	135493987	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493417
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026004	chr2	+	384	3	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	-2637	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	330.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTGCTGTAAAATATCTC	NA	False	NA	NA	False	AATAAA	-32	NA	135488442	135491346	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_135488469_135490827_135490892_135491052
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026078	chr2	-	100	1	ISM	ENSMUSG00000027423.16	ENSMUST00000028909.5	2419	13	20350	0	2455	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTTCTGACTGTTTT	NA	False	NA	NA	False	AAGAAA	-16	NA	144092142	144092042	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_144092000_144092100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026102	chr2	-	2139	5	FSM	ENSMUSG00000027428.10	ENSMUST00000028915.6	2170	5	31	0	31	0	multi-exon	FALSE	canonical	3	248	junction_1	20.0873094266007	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTGACTGCTGTGGTGC	NA	False	NA	-9	True	AATAAA	-20	NA	144392758	144384184	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_144385930_144386293_144386380_144389913_144390020_144391023_144391067_144392599
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026114	chr2	+	474	2	FSM	ENSMUSG00000074754.5	ENSMUST00000136628.2	471	2	0	-3	0	3	multi-exon	FALSE	canonical	3	228	junction_1	0	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGTCTTCTTGAAGGTA	NA	False	NA	NA	False	NA	NA	NA	144435973	144437289	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_144436126_144436967
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026117	chr2	+	1276	6	FSM	ENSMUSG00000027430.13	ENSMUST00000028917.7	1350	6	55	19	55	-19	multi-exon	TRUE	canonical	3	290	junction_5	10.373041983912	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCTGTGTCTGTTTAAT	NA	False	NA	NA	False	AATAAA	-42	NA	144441871	144610659	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_144442012_144445707_144445799_144459111_144459348_144477677_144477785_144588820_144588994_144610130
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026158	chr2	+	395	4	FSM	ENSMUSG00000079008.3	ENSMUST00000109922.2	3018	4	0	2623	0	-2623	multi-exon	FALSE	canonical	3	21	junction_3	13.8804418757713	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATAATGCAGAGACACCC	NA	False	NA	NA	False	NA	NA	NA	150099436	150109597	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_150099549_150108044_150108172_150108370_150108432_150109502
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026167	chr2	+	678	1	Genic_Genomic	ENSMUSG00000095315.3	novel	NA	NA	NA	NA	2634	1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACATTTTGGGGAGCATCA	NA	False	NA	NA	False	AATAAA	-21	NA	150168255	150168933	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr2_+_150168300_150168900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026169	chr2	-	2340	4	FSM	ENSMUSG00000074731.4	ENSMUST00000109914.2	2734	4	0	394	0	-394	multi-exon	FALSE	canonical	3	25	junction_1	6.12825877028341	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTAGGGGCAGTCATGGT	NA	False	NA	NA	False	AATAAA	-20	NA	150327011	150313304	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_150315345_150316415_150316477_150316675_150316803_150326899
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026172	chr2	-	2117	9	FSM	ENSMUSG00000033096.8	ENSMUST00000046399.7	2235	9	119	-1	96	1	multi-exon	FALSE	canonical	3	74	junction_7	10.0054672554559	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGCTGATTATTACTC	1118	False	NA	NA	False	AATAAA	-16	NA	150450368	150424998	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_150426109_150427682_150427876_150428300_150428436_150428911_150429087_150430822_150430940_150431952_150432046_150436221_150436338_150442163_150442281_150450307
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026191	chr2	+	1116	7	FSM	ENSMUSG00000027454.11	ENSMUST00000028948.5	1087	7	-23	-6	-23	6	multi-exon	FALSE	canonical	3	394	junction_1	28.3058690419888	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTGGTAGCTTATCTTT	2399	False	NA	29	True	AATAAA	-36	NA	150751490	150773206	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801_150767919_150769961_150770037_150772760
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026213	chr2	-	1381	7	FSM	ENSMUSG00000032869.16	ENSMUST00000042452.11	3809	7	-16	2444	-16	9	multi-exon	FALSE	canonical	3	320	junction_3	11.5385826204473	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTCCTTTTTGTTAATGCA	NA	False	NA	-19	True	AATACA	-24	NA	151583246	151560175	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151576141_151576225_151577393_151577547_151582930
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026227	chr2	+	2600	2	FSM	ENSMUSG00000032802.9	ENSMUST00000041500.8	2812	2	206	6	206	-6	multi-exon	FALSE	canonical	3	134	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAGCCCAACAGTTTTG	NA	False	NA	25	True	NA	NA	NA	151947649	151953290	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_151947868_151950908
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026238	chr2	+	2255	1	ISM	ENSMUSG00000027465.14	ENSMUST00000028963.14	3386	8	17912	2	3541	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGTCTTTGTATCATC	NA	False	NA	26	True	AATAAA	-21	NA	152153659	152155914	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_152153700_152155900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026240	chr2	-	2384	12	FSM	ENSMUSG00000027466.16	ENSMUST00000109847.9	2384	12	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_6	68.3604931579153	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174332	152158253	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026253	chr2	+	213	1	Intergenic	novelGene_190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGTGTATTTGATTGACTT	NA	False	NA	NA	False	NA	NA	NA	152196673	152196886	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_152196700_152196900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026257	chr2	+	178	1	Intergenic	novelGene_191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAATATTTATTTTTTTA	3713	False	NA	2	True	NA	NA	NA	152419481	152419659	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_152419500_152419700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026263	chr2	+	810	1	FSM	ENSMUSG00000042814.9	ENSMUST00000062148.9	912	1	107	-5	107	5	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGGGTGTTGTAACCACAA	NA	False	NA	106	True	AATAAA	-28	NA	152529061	152529871	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_152529100_152529900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026321	chr2	+	2561	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	27	4748	27	-4748	multi-exon	FALSE	canonical	3	1002	junction_3	91.867204884732	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCTTCTGAAATGTGT	NA	False	NA	19	True	AATAAA	-20	NA	153583220	153610482	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026325	chr2	+	1039	1	FSM	ENSMUSG00000083097.4	ENSMUST00000118786.2	435	1	-119	-485	-119	485	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACTCCATGACCAAGATA	NA	False	NA	NA	False	NA	NA	NA	153667971	153669010	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_153668000_153669000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026341	chr2	-	837	1	Genic_Genomic	ENSMUSG00000027490.18	novel	NA	NA	NA	NA	9480	3	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTTGTGTCGAATGCT	5937	False	NA	0	True	AGTAAA	-17	NA	154402160	154401323	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr2_-_154401300_154402200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026373	chr2	+	684	4	FSM	ENSMUSG00000047459.15	ENSMUST00000109682.9	684	4	0	0	0	0	multi-exon	FALSE	canonical	3	1428	junction_1	142.385236438177	640	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGTCTTTACTAGA	NA	False	NA	19	True	AGTAAA	-21	NA	155078454	155092197	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_155078538_155084650_155084727_155089690_155089859_155091840
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026381	chr2	+	444	1	Genic_Genomic	ENSMUSG00000027602.10	novel	NA	NA	NA	NA	752	11	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTTTGGGAGCAGG	NA	False	NA	22	True	AATAAA	-34	NA	155119560	155120004	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr2_+_155119600_155120000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026448	chr2	-	716	3	FSM	ENSMUSG00000027618.18	ENSMUST00000109600.2	709	3	-6	-1	0	1	multi-exon	FALSE	canonical	3	275	junction_2	22	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGCGGGTCAATGGGACA	3106	False	NA	1	True	TTTAAA	-7	NA	155986106	155983705	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_155984163_155985286_155985379_155985939
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026462	chr2	-	2810	17	FSM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	0	0	0	0	multi-exon	FALSE	canonical	3	1358	junction_5	409.933526432945	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022158	155989158	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026463	chr2	-	2823	18	NIC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	383	junction_15	737.860411025805	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022116	155989158	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026479	chr2	-	765	4	ISM	ENSMUSG00000027620.17	ENSMUST00000152919.3	699	5	-47	228	0	-228	5prime_fragment	FALSE	canonical	3	90	junction_1	977.365279150477	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTTCTTGATGACTT	NA	False	NA	NA	False	ATTAAA	-17	NA	156022116	156019508	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_156019827_156020799_156020873_156021096_156021161_156021806
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026495	chr2	+	193	1	Intergenic	novelGene_192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAATTACTGGGGACTGG	NA	False	NA	NA	False	NA	NA	NA	156253237	156253430	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_156253200_156253400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026499	chr2	+	2621	4	FSM	ENSMUSG00000027628.11	ENSMUST00000029158.4	3427	4	-8	814	4	2	multi-exon	FALSE	canonical	3	133	junction_3	2.16024689946929	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCCTGTGTGAGTCTCTT	NA	False	NA	9	True	ATTAAA	-20	NA	156389507	156410078	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_156389804_156392568_156393370_156397746_156397977_156408784
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026520	chr2	+	578	2	ISM	ENSMUSG00000027637.4	ENSMUST00000029165.4	1045	4	9283	0	-131	0	3prime_fragment	FALSE	canonical	3	1366	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGCATGCCTGGTA	NA	False	NA	14	True	AATAAA	-18	NA	156714330	156715483	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_156714388_156714962
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026540	chr2	-	2400	13	FSM	ENSMUSG00000027641.14	ENSMUST00000124518.2	2383	13	-10	-7	-2	7	multi-exon	FALSE	canonical	3	92	junction_1	21.3559450478992	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTATACATGTTTTTGTT	NA	False	NA	1	True	NA	NA	NA	157046456	157016898	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026571	chr2	-	798	2	NNC	ENSMUSG00000087547.2	novel	629	2	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGGCCAAATATGTATG	8707	False	NA	-9	True	NA	NA	NA	157439240	157437498	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_-_157438071_157439014
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026579	chr2	+	1101	1	FSM	ENSMUSG00000062846.8	ENSMUST00000121302.2	477	1	-84	-540	-84	540	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAAAGAACAAATGAGTGT	5914	False	NA	NA	False	AATAAA	-42	NA	157743371	157744472	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_157743400_157744500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026592	chr2	-	1993	5	FSM	ENSMUSG00000085385.8	ENSMUST00000154030.8	2007	5	0	14	0	6	multi-exon	FALSE	canonical	3	64	junction_4	13.2193040664023	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCTTTTAAATCTGTG	8347	False	NA	-11	True	AATAAA	-18	NA	158203442	158197698	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_158197962_158199117_158199184_158201101_158202520_158202862_158202991_158203324
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026601	chr2	+	2270	4	FSM	ENSMUSG00000027654.3	ENSMUST00000029183.3	2266	4	-4	0	-4	0	multi-exon	FALSE	canonical	3	282	junction_3	16.3571255285137	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGATTCTTTTTGTT	402	False	NA	8	True	AATAAA	-16	NA	158610008	158628557	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_158610508_158621764_158621933_158625052_158625178_158627079
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026639	chr2	+	567	1	ISM	ENSMUSG00000017858.13	ENSMUST00000018002.13	2248	13	28221	0	23132	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162887494	162888061	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_162887500_162888100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026651	chr2	+	1365	1	Genic_Genomic	ENSMUSG00000017861.12	novel	NA	NA	NA	NA	8176	5	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTCCTCCTTTTTCTGCT	NA	False	NA	31	True	NA	NA	NA	162925248	162926613	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr2_+_162925200_162926600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026664	chr2	-	1074	1	ISM	ENSMUSG00000035399.13	ENSMUST00000046908.10	1620	4	12633	0	4770	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTATTGTGTGTTGTTTCTT	NA	False	NA	-4	True	NA	NA	NA	163248815	163247741	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_163247700_163248800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026669	chr2	-	2307	10	FSM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	-7	1383	-7	-1383	multi-exon	FALSE	canonical	3	366	junction_6	56.7393868903371	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGTGTATTTGTTTAGA	NA	False	NA	-3	True	ATTAAA	-22	NA	163487058	163466574	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026684	chr2	+	844	1	ISM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	22785	0	22242	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTGTGGATTGATGTG	5879	False	NA	21	True	AATAAA	-16	NA	163859664	163860508	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_163859700_163860500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026726	chr2	+	538	5	FSM	ENSMUSG00000017299.14	ENSMUST00000135458.2	560	5	23	-1	23	1	multi-exon	FALSE	canonical	3	592	junction_3	38.3699100858993	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTGTGTTGTGTTCAGTC	NA	False	NA	14	True	NA	NA	NA	164596081	164601480	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026745	chr2	-	1004	6	FSM	ENSMUSG00000017307.17	ENSMUST00000017451.7	1055	6	51	0	-9	0	multi-exon	TRUE	canonical	3	23	junction_1	116.717779279765	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8217	False	NA	-1	True	AATAAA	-19	NA	164646751	164634687	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_-_164634931_164637001_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026749	chr2	-	226	1	ISM	ENSMUSG00000017307.17	ENSMUST00000134611.4	1017	5	11886	5	3494	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAGCTGACCTTTAATAG	3907	False	NA	-3	True	AATAAA	-17	NA	164634915	164634689	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_164634700_164634900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026758	chr2	+	489	1	ISM	ENSMUSG00000017764.3	ENSMUST00000017908.3	2705	2	3693	4	3366	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTCGTGTCTTGTCTGG	NA	False	NA	12	True	AATAAA	-15	NA	164668298	164668787	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_164668300_164668800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026784	chr2	+	518	2	FSM	ENSMUSG00000039849.7	ENSMUST00000145327.2	611	2	61	32	8	-32	multi-exon	FALSE	canonical	3	441	junction_1	0	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTCGTTAACAACCAGT	5957	False	NA	12	True	AATAAA	-22	NA	164721284	164725087	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_164721410_164724694
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026837	chr2	+	2161	8	FSM	ENSMUSG00000017999.17	ENSMUST00000150571.2	2151	8	-10	0	-10	0	multi-exon	FALSE	canonical	3	722	junction_7	28.1497453499193	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATAGTATTATTTCCCAT	NA	False	NA	NA	False	NA	NA	NA	166857219	166867733	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026847	chr2	+	873	3	ISM	ENSMUSG00000074578.15	ENSMUST00000238277.2	572	5	0	0	0	0	intron_retention	FALSE	canonical	3	874	junction_1	67	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905140	166907782	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_166905218_166905555_166905648_166907078
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026861	chr2	+	153	1	ISM	ENSMUSG00000074578.15	ENSMUST00000189909.7	738	5	2776	0	2477	0	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	1162	False	NA	35	True	AATAAA	-45	NA	166907629	166907782	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_166907600_166907800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026864	chr2	+	211	1	Intergenic	novelGene_193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGACTTTGGACAAGTGA	NA	False	NA	NA	False	NA	NA	NA	167037764	167037975	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_167037800_167038000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026875	chr2	-	1324	1	ISM	ENSMUSG00000017929.14	ENSMUST00000109221.9	4210	9	49416	0	5931	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGTAGTCGTCTCTCTG	NA	False	NA	-1	True	AGTAAA	-23	NA	167141687	167140363	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_167140400_167141700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026889	chr2	-	997	1	ISM	ENSMUSG00000078923.11	ENSMUST00000109207.10	2041	4	23255	206	1808	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGGTGGTTTTATTTTAA	NA	False	NA	NA	False	AATAAA	-22	NA	167450760	167449763	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_167449800_167450800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026911	chr2	-	976	8	NIC	ENSMUSG00000078919.11	novel	2293	9	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	2	20	junction_2	153.11846820721	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTGCTTTCATTTAGA	NA	False	NA	-19	True	AATAAA	-23	NA	168072284	168052200	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_-_168052557_168053285_168053401_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026921	chr2	-	273	1	Intergenic	novelGene_194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATTTTTTTTTTGAGACA	NA	False	NA	NA	False	AATAAA	-40	NA	168153073	168152800	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_-_168152800_168153100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026927	chr2	-	189	1	ISM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	29723	0	-12916	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTGTATTGTATAGTTT	NA	False	NA	0	True	AATAAA	-29	NA	168767469	168767280	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_168767300_168767500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026945	chr2	+	904	1	FSM	ENSMUSG00000084013.2	ENSMUST00000118388.2	846	1	131	-189	131	189	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCAGCTGGGTGGTTGTTG	NA	False	NA	NA	False	AATAAA	-36	NA	170127085	170127989	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_170127100_170128000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000026975	chr2	-	376	1	ISM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	13970	0	6566	0	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGTGGGTAATCATTTGA	NA	False	NA	-2	True	AATATA	-22	NA	172198485	172198109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_172198100_172198500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027007	chr2	+	215	1	Intergenic	novelGene_195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGGTTTATTTGTGGAG	NA	False	NA	NA	False	NA	NA	NA	172810185	172810400	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_172810200_172810400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027016	chr2	+	1727	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173878.8	936	4	30	-821	16	0	multi-exon	FALSE	canonical	0	0	junction_1	369.719713657071	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGTTTGAGGTTTTTCTC	NA	False	NA	NA	False	AATAAA	-23	NA	172863721	172876527	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_172864041_172864584_172864709_172865119_172865175_172875298
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027024	chr2	+	162	1	ISM	ENSMUSG00000054455.6	ENSMUST00000067530.6	7032	6	41688	4979	10999	1235	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTCATTTTGTCACAT	NA	False	NA	21	True	AATAAA	-18	NA	173620991	173621153	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_173621000_173621200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027046	chr2	-	346	1	ISM	ENSMUSG00000016256.11	ENSMUST00000016400.9	1441	6	11201	0	11201	0	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTACTTTATTTACA	6375	False	NA	0	True	AGTAAA	-17	NA	174269631	174269285	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_174269300_174269600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027091	chr2	-	419	3	Fusion	ENSMUSG00000078902.4_ENSMUSG00000090093.9	novel	703	3	NA	NA	11	143	multi-exon	FALSE	canonical	3	30	junction_1	2.5	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATATGTAATTATTGT	NA	False	NA	NA	False	NA	NA	NA	175017653	174974574	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr2_-_174974783_174974988_174975089_175017542
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027093	chr2	-	446	3	Fusion	ENSMUSG00000078902.4_ENSMUSG00000090093.9	novel	703	3	NA	NA	11	143	multi-exon	FALSE	canonical	3	11	junction_2	9.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATATGTAATTATTGT	NA	False	NA	NA	False	NA	NA	NA	175017653	174974574	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr2_-_174974783_174974988_174975116_175017542
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027163	chr2	-	1325	1	Intergenic	novelGene_196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	176883303	176881978	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_-_176882000_176883300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027178	chr2	-	425	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5328	-829	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_3	127.14908135291	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGTGGTAAAGCTTTTA	NA	False	NA	-24	True	NA	NA	NA	176964157	176957275	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_-_176957402_176958542_176958604_176958795_176958923_176964046
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027184	chr2	-	449	5	Fusion	ENSMUSG00000078869.3_ENSMUSG00000078868.4	novel	1050	3	NA	NA	-92	-841	multi-exon	FALSE	canonical	0	0	junction_3	219.014268941546	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGACTGTAACCAATGTG	NA	False	NA	-36	True	NA	NA	NA	177016192	176957287	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr2_-_176957402_176958542_176958604_176958795_176958923_177012912_177012965_177016097
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027186	chr2	-	300	4	Fusion	ENSMUSG00000078869.3_ENSMUSG00000078868.4	novel	1050	3	NA	NA	-72	-843	multi-exon	FALSE	canonical	0	0	junction_2	206.259275885689	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCATGACTGTAACCAATG	NA	False	NA	-38	True	NA	NA	NA	177016172	176957289	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr2_-_176957402_176958542_176958604_177012912_177012965_177016097
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027228	chr2	+	466	5	Fusion	ENSMUSG00000094786.2_ENSMUSG00000078864.11	novel	1077	4	NA	NA	-3	-259	multi-exon	FALSE	canonical	3	49	junction_2	85.9200209497181	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	177190004	177411496	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr2_+_177190111_177404638_177404694_177409836_177409964_177410168_177410230_177411379
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027236	chr2	-	185	1	Intergenic	novelGene_197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTGCACAGAAATTGAGC	NA	False	NA	NA	False	NA	NA	NA	177253692	177253507	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_-_177253500_177253700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027260	chr2	+	610	7	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	-23	-259	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_3	121.969941652305	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	177401057	177411496	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_177401169_177404638_177404694_177405994_177406097_177409531_177409569_177409836_177409964_177410168_177410230_177411379
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027268	chr2	+	542	6	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	8	-259	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_3	118.732640836461	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	177401088	177411496	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_177401169_177404638_177404694_177405994_177406097_177409836_177409964_177410168_177410230_177411379
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027292	chr2	-	616	4	NNC	ENSMUSG00000078861.9	novel	1372	3	NA	NA	-7	12808	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	39.4743235815666	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACCTGGAAAGTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	177720255	177696679	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_-_177697003_177711347_177711409_177711615_177711743_177720150
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027308	chr2	+	655	1	ISM	ENSMUSG00000039108.15	ENSMUST00000055485.12	2534	9	9820	0	6898	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGCCTCTGTCCGTCAC	NA	False	NA	15	True	AATAAA	-16	NA	179676599	179677254	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_179676600_179677300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027315	chr2	+	2568	1	ISM	ENSMUSG00000039086.10	ENSMUST00000041126.9	4343	11	25125	0	25125	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATTTCTGTTTATTGAG	NA	False	NA	18	True	ATTAAA	-19	NA	179709426	179711994	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_179709400_179712000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027330	chr2	+	682	4	ISM	ENSMUSG00000039041.16	ENSMUST00000145230.8	1067	8	3526	0	-170	0	3prime_fragment	FALSE	canonical	3	2056	junction_1	193.809184508888	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGGTCTGGGCCTGTGTT	NA	False	NA	2	True	AATAAA	-22	NA	179816977	179818079	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_+_179817186_179817390_179817549_179817646_179817750_179817866
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027337	chr2	+	412	6	NNC	ENSMUSG00000039001.13	novel	394	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	2882.90848970272	358	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCTTTTGCTGTTTTTA	NA	False	NA	25	True	AATAAA	-26	NA	179899171	179900237	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_179899241_179899392_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027353	chr2	+	505	5	NIC	ENSMUSG00000039001.13	novel	394	6	NA	NA	20	-1	intron_retention	FALSE	canonical	3	3954	junction_4	1482.42763314099	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCTTTTGCTGTTTTTA	NA	False	NA	25	True	AATAAA	-26	NA	179899230	179900237	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_+_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027361	chr2	+	2200	9	NNC	ENSMUSG00000049401.11	novel	2449	7	NA	NA	-27	-5	at_least_one_novel_splicesite	TRUE	canonical	3	37	junction_7	18.4306131205666	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTGGCCGTGTTCT	NA	False	NA	17	True	AATAAA	-17	NA	180231227	180237624	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000_180236947_180236973_180237082_180237108
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027362	chr2	+	2254	7	FSM	ENSMUSG00000049401.11	ENSMUST00000029087.4	2449	7	190	5	-27	-5	multi-exon	FALSE	canonical	3	62	junction_6	11.4370256428652	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTGGCCGTGTTCT	NA	False	NA	17	True	AATAAA	-17	NA	180231227	180237624	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027373	chr2	+	199	1	Intergenic	novelGene_198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGCATTCACTGATAAG	NA	False	NA	NA	False	NA	NA	NA	180357092	180357291	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr2_+_180357100_180357300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027382	chr2	-	1294	1	NIC	ENSMUSG00000038848.15	novel	3184	5	NA	NA	14717	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTGTTCTTGTTTTC	NA	False	NA	-2	True	NA	NA	NA	180547463	180546169	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr2_-_180546200_180547500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027421	chr2	-	597	1	ISM	ENSMUSG00000038671.16	ENSMUST00000170190.8	2483	7	6318	800	1054	-605	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTAGATGGTGGTTCCC	NA	False	NA	-6	True	AATAAA	-27	NA	181000879	181000282	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr2_-_181000300_181000900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027516	chr3	+	191	1	Intergenic	novelGene_199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGAGTGTTGACTCTTA	NA	False	NA	NA	False	NA	NA	NA	10285388	10285579	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_10285400_10285600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027568	chr3	+	1452	1	Intergenic	novelGene_200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGCACAGGCATGGAACT	NA	False	NA	NA	False	AATAAA	-42	NA	15685325	15686777	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_15685300_15686800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027592	chr3	+	545	1	FSM	ENSMUSG00000057036.8	ENSMUST00000077389.8	444	1	-25	-76	-25	76	mono-exon	FALSE	NA	NA	NA	NA	NA	877	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATTTAGTACCTATTTA	NA	False	NA	NA	False	NA	NA	NA	24387206	24387751	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_24387200_24387800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027618	chr3	+	525	4	NIC	ENSMUSG00000039221.11	novel	552	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	3614.25809199558	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859656	28861571	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_+_28859731_28860648_28860742_28860885_28861008_28861335
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027625	chr3	+	508	4	NNC	ENSMUSG00000039221.11	novel	552	4	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	3263.12164788395	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859659	28861571	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr3_+_28859693_28860651_28860742_28860858_28861008_28861335
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027628	chr3	+	586	4	NIC	ENSMUSG00000039221.11	novel	552	4	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_1	3654.53444367405	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859659	28861571	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_+_28859731_28860651_28860742_28860818_28861008_28861335
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027650	chr3	-	1770	9	FSM	ENSMUSG00000074653.11	ENSMUST00000126658.8	1586	9	-35	-149	-22	149	multi-exon	FALSE	canonical	3	40	junction_7	9.37333318515884	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGGCTCATGATACCTTT	NA	False	NA	-5	True	NA	NA	NA	30754014	30733057	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745450_30749635_30749780_30753847
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027694	chr3	+	544	1	ISM	ENSMUSG00000027667.14	ENSMUST00000193287.6	2211	7	9941	90	1401	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	NA	False	NA	22	True	AATAAA	-22	NA	32574348	32574892	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_32574300_32574900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027742	chr3	+	2232	16	NIC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	-6	0	intron_retention	FALSE	canonical	3	754	junction_14	169.31149465474	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	4843	False	NA	20	True	ATTAAA	-23	NA	34074240	34123494	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027787	chr3	-	1559	13	FSM	ENSMUSG00000027712.14	ENSMUST00000029266.14	1731	13	172	0	-63	0	multi-exon	FALSE	canonical	3	95	junction_1	8.69985632065266	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTAGGTTTGTGTTT	NA	False	NA	3	True	AATAAA	-21	NA	36529871	36503071	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_36503556_36504460_36504584_36504786_36504846_36506335_36506432_36507619_36507714_36511141_36511199_36511607_36511688_36514591_36514683_36516029_36516144_36518116_36518212_36519399_36519485_36529578_36529610_36529721
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027794	chr3	-	2782	8	FSM	ENSMUSG00000027715.10	ENSMUST00000029270.10	2965	8	183	0	-3	0	multi-exon	FALSE	canonical	3	973	junction_1	54.4767315990441	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTTGGTGGGCTGTGTG	NA	False	NA	-7	True	AATAAA	-21	NA	36626116	36619013	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_36620432_36620689_36620824_36621148_36621263_36621872_36622081_36622736_36622961_36623128_36623239_36624884_36625129_36625786
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027819	chr3	+	524	1	FSM	ENSMUSG00000100755.2	ENSMUST00000116115.3	425	1	-33	-66	-33	66	mono-exon	FALSE	NA	NA	NA	NA	NA	12564	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGTGGAATAGGATTGTG	7631	False	NA	NA	False	AATAAA	-32	NA	37768855	37769379	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_37768900_37769400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027834	chr3	-	1183	1	ISM	ENSMUSG00000049940.8	ENSMUST00000058578.8	3007	3	14370	1168	1994	1026	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTCGAGTCGGACTCTA	NA	False	NA	NA	False	AATAAA	-20	NA	41023111	41021928	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_-_41021900_41023100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027869	chr3	+	2876	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	1	2604	1	202	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAAATGAAGTAACTTT	NA	False	NA	NA	False	TATAAA	-8	NA	41510166	41568695	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027873	chr3	-	594	2	FSM	ENSMUSG00000037910.3	ENSMUST00000036023.3	593	2	-1	0	-1	0	multi-exon	FALSE	canonical	3	53	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGTTTAGATGTGTCT	NA	False	NA	0	True	AATAAA	-42	NA	48563538	48560166	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_48560355_48563132
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027878	chr3	+	1424	1	ISM	ENSMUSG00000023087.16	ENSMUST00000023849.15	3059	3	25763	11	6802	2	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTGTCTCTTTGGTCTA	NA	False	NA	16	True	AATAAA	-25	NA	51157630	51159054	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_51157600_51159100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027879	chr3	-	808	1	ISM	ENSMUSG00000037174.19	ENSMUST00000194641.6	5919	10	84626	2510	4204	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGGTTTTGGTCTCTG	NA	False	NA	-6	True	AATATA	-14	NA	51163458	51162650	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_-_51162600_51163500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027882	chr3	+	193	1	Intergenic	novelGene_201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCCAGGGTCAGGGGGAA	NA	False	NA	NA	False	NA	NA	NA	51251813	51252006	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_51251800_51252000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027885	chr3	+	178	1	Intergenic	novelGene_202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAAAAGTTCCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	51262576	51262754	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_51262600_51262800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027887	chr3	+	199	1	Intergenic	novelGene_203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTCACAGTTGGACTTA	NA	False	NA	NA	False	NA	NA	NA	51287984	51288183	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_51288000_51288200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027895	chr3	+	195	1	Intergenic	novelGene_204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTAAAAAATACAATTTC	NA	False	NA	NA	False	NA	NA	NA	51300649	51300844	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_51300600_51300800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027901	chr3	+	4184	20	FSM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	-48	1954	-48	1813	multi-exon	FALSE	canonical	3	462	junction_18	45.4091281535727	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGTGAATATTTCCACT	NA	False	NA	23	True	AATAAA	-16	NA	51323388	51381452	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067_51354188_51355761_51355858_51355973_51356081_51358730_51358804_51363254_51363425_51364718_51364872_51366042_51366172_51367367_51367582_51368504_51368699_51370684_51370794_51373014_51373114_51377506_51377651_51378905_51379004_51380020
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027909	chr3	+	182	1	Intergenic	novelGene_205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGCAATATTTTTTAAA	NA	False	NA	3	True	NA	NA	NA	51482739	51482921	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_51482700_51482900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027910	chr3	+	195	1	Intergenic	novelGene_206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACGTAAAAACATTTTTG	NA	False	NA	NA	False	NA	NA	NA	51509817	51510012	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_51509800_51510000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027918	chr3	-	215	1	ISM	ENSMUSG00000027742.14	ENSMUST00000036665.10	3182	19	34901	247	12349	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTTGTAGTATTTTTATA	NA	False	NA	-1	True	ATTAAA	-18	NA	52889757	52889542	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_-_52889500_52889800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027922	chr3	-	451	2	Antisense	novelGene_ENSMUSG00000048332.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	19	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGTCTTGGCTACATT	NA	False	NA	NA	False	NA	NA	NA	53026128	53020955	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Antisense_chr3_-_53021169_53025890
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027927	chr3	+	1526	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	-25	-13	-25	13	mono-exon	FALSE	NA	NA	NA	NA	NA	318	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATGTTCAACATGCTTAG	5415	False	NA	NA	False	NA	NA	NA	54388833	54390359	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_54388800_54390400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027940	chr3	-	1849	9	NIC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	-2	0	intron_retention	FALSE	canonical	3	1645	junction_8	201.288932569578	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCCTTACGTTGTT	NA	False	NA	-12	True	AATAAA	-27	NA	54642469	54636098	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027954	chr3	-	219	1	NIC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	562	0	mono-exon	FALSE	NA	NA	NA	NA	NA	227	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCCTTACGTTGTT	NA	False	NA	-12	True	AATAAA	-27	NA	54636317	54636098	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_-_54636100_54636300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027972	chr3	+	1903	1	ISM	ENSMUSG00000036580.16	ENSMUST00000044116.14	3770	9	23311	1	19242	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAGATGTATTCACTGGA	NA	False	NA	20	True	AATAAA	-21	NA	55042839	55044742	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_55042800_55044700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000027974	chr3	+	2382	11	FSM	ENSMUSG00000027794.5	ENSMUST00000029369.5	2364	11	-18	0	-18	0	multi-exon	FALSE	canonical	3	238	junction_8	29.6317397396778	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGTGCAAGGAATCTGAT	NA	False	NA	20	True	AATAAA	-22	NA	55089430	55117378	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_55089536_55096541_55096757_55097730_55097793_55097874_55097980_55099659_55099757_55102493_55102605_55104147_55104296_55104418_55104508_55111754_55111877_55115013_55115271_55116307
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028004	chr3	+	365	1	ISM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	31316	0	12904	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	3439	False	NA	5	True	AATAAA	-16	NA	58464557	58464922	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_58464600_58464900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028016	chr3	+	971	9	ISM	ENSMUSG00000027820.13	ENSMUST00000029400.7	3782	23	114	41481	114	-4477	5prime_fragment	FALSE	canonical	3	117	junction_1	104.818593293366	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCAATGTAACACATATT	NA	False	NA	NA	False	AATAAA	-23	NA	63203629	63247563	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_63203744_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028020	chr3	-	2967	6	FSM	ENSMUSG00000027822.17	ENSMUST00000029402.15	3150	6	183	0	81	0	multi-exon	FALSE	canonical	3	46	junction_5	11.3666177907063	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAAGCTGTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-24	NA	63872006	63849750	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_63850838_63851986_63852203_63854989_63855108_63855492_63855678_63861234_63861426_63870836
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028043	chr3	+	2673	18	FSM	ENSMUSG00000027774.17	ENSMUST00000077271.9	4078	18	14	1391	-6	334	multi-exon	TRUE	canonical	0	0	junction_6	154.691388272057	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTTTTTTTTTTTGGA	NA	False	NA	NA	False	TATAAA	-10	NA	67337442	67382471	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028048	chr3	+	3011	16	FSM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	0	0	0	0	multi-exon	TRUE	canonical	3	661	junction_4	69.2886394407882	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAGGATAAATGACTGC	NA	False	NA	19	True	AATAAA	-20	NA	67490073	67511570	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028051	chr3	+	1206	1	ISM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	20291	0	18286	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAGGATAAATGACTGC	6151	False	NA	19	True	AATAAA	-20	NA	67510364	67511570	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_67510400_67511600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028060	chr3	+	4078	24	FSM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	238	0	6	0	multi-exon	FALSE	canonical	3	521	junction_3	142.05353233605	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	20	True	TATAAA	-21	NA	68912308	68941956	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028081	chr3	+	1596	9	FSM	ENSMUSG00000027834.16	ENSMUST00000029423.9	4091	9	-2	2497	-2	-2497	multi-exon	FALSE	canonical	3	8	junction_2	2.1650635094611	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTTTTTCATTTTGAA	NA	False	NA	NA	False	AATAAA	-22	NA	75464851	75548305	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_75464950_75520386_75520655_75521760_75521992_75523874_75524070_75526425_75526631_75531165_75531264_75545224_75545312_75547555_75547646_75547981
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028091	chr3	-	1022	1	FSM	ENSMUSG00000099370.2	ENSMUST00000191479.2	818	1	190	-394	190	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	1157	False	NA	-5	True	NA	NA	NA	75555774	75554752	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_75554800_75555800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028098	chr3	-	137	1	Intergenic	novelGene_207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTTGTCTTGGTCCCAT	NA	False	NA	-1	True	NA	NA	NA	75557893	75557756	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_-_75557800_75557900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028103	chr3	+	196	1	Intergenic	novelGene_208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTAGAGCTAATTGGACA	NA	False	NA	NA	False	NA	NA	NA	79320219	79320415	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_79320200_79320400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028115	chr3	+	1974	2	FSM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	-4	0	-4	0	multi-exon	FALSE	canonical	3	150	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGTTTCTTTAGACTCA	4365	False	NA	NA	False	AATAAA	-14	NA	79536381	79540127	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_79536664_79538435
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028127	chr3	+	208	1	Intergenic	novelGene_209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAAAACTGTGAGTTAGTG	NA	False	NA	NA	False	NA	NA	NA	83737583	83737791	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_83737600_83737800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028131	chr3	+	273	1	Intergenic	novelGene_210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCAGACGTACTCTATAA	4449	False	NA	NA	False	NA	NA	NA	83778302	83778575	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_83778300_83778600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028146	chr3	+	2011	13	FSM	ENSMUSG00000028085.13	ENSMUST00000127348.8	3469	13	0	1458	0	6	multi-exon	FALSE	canonical	3	140	junction_6	19.0283049399806	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCCGTGGGTGCTTTGTA	NA	False	NA	15	True	AATAAA	-19	NA	85481425	85561471	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587_85559723_85561030
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028151	chr3	+	199	1	Intergenic	novelGene_211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATAACTTGCTGGTCTTAC	7337	False	NA	NA	False	NA	NA	NA	86024575	86024774	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_86024600_86024800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028156	chr3	-	974	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	4	-1	4	1	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	6720	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTGTCCATTGATTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	86050005	86045245	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028178	chr3	+	207	1	Intergenic	novelGene_212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCACAGCGGGGCTGGAGA	NA	False	NA	NA	False	NA	NA	NA	87789285	87789492	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_87789300_87789500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028180	chr3	+	2004	6	FSM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	241	0	241	0	multi-exon	FALSE	canonical	3	2720	junction_5	175.133549041867	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACTAATTCTTTTCAA	NA	False	NA	25	True	AATAAA	-21	NA	87813868	87823439	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_87814022_87820397_87820475_87820619_87820759_87821358_87821545_87821779_87821998_87822208
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028189	chr3	+	1233	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	-12	5	-12	5	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAGTCTTAAAAGCTTTA	NA	False	NA	21	True	AATAAA	-23	NA	87826800	87830974	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028204	chr3	+	941	1	Genic_Genomic	ENSMUSG00000048039.9	novel	NA	NA	NA	NA	9433	1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTGTATGTGTGTGCT	18	True	NA	32	True	NA	NA	NA	87847053	87847994	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr3_+_87847100_87848000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028206	chr3	+	903	4	FSM	ENSMUSG00000004885.6	ENSMUST00000005019.6	931	4	28	0	28	0	multi-exon	FALSE	canonical	3	31	junction_1	3.29983164553722	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCTGTGGCTCCCTGAG	8859	False	NA	8	True	ATTAAA	-19	NA	87856000	87860683	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_87856218_87859421_87859601_87859784_87859902_87860293
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028326	chr3	+	192	1	Intergenic	novelGene_213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTCCTTGATTTGGGGT	3507	False	NA	NA	False	NA	NA	NA	88590401	88590593	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_88590400_88590600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028344	chr3	-	1774	14	NNC	ENSMUSG00000068922.15	novel	1875	14	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	canonical	3	215	junction_1	142.181149559078	21	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTGTGTAGGGACCTGT	NA	False	NA	-34	True	AATAAA	-17	NA	88821235	88816948	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr3_-_88817215_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028379	chr3	+	1294	8	ISM	ENSMUSG00000068917.13	ENSMUST00000128318.8	1885	12	5311	0	-1875	0	3prime_fragment	FALSE	canonical	3	409	junction_7	61.9789299286624	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCCAATCCCTGGAAT	NA	False	NA	18	True	AATAAA	-19	NA	89077596	89084228	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028398	chr3	-	1091	8	FSM	ENSMUSG00000064068.16	ENSMUST00000173477.8	892	8	-67	-132	0	0	multi-exon	FALSE	canonical	1	38	junction_5	268.396143407312	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGAATCCCTTCTTTCT	NA	False	NA	-16	True	AATAAA	-21	NA	89121214	89116387	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117981_89119989_89120070_89120183_89120254_89121119
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028417	chr3	+	535	4	ISM	ENSMUSG00000042747.13	ENSMUST00000168900.3	582	5	248	-14	248	1	3prime_fragment	FALSE	canonical	3	1794	junction_2	31.5418593124896	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTCTGTGAACTGTGA	7839	False	NA	21	True	AATAAA	-15	NA	89153988	89157030	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_89154240_89154371_89154436_89156380_89156448_89156877
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028438	chr3	-	191	1	NIC	ENSMUSG00000042642.14	novel	3007	9	NA	NA	8509	-415	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	NA	False	NA	-15	True	AGTAAA	-18	NA	89310579	89310388	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_-_89310400_89310600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028448	chr3	-	257	1	ISM	ENSMUSG00000028044.7	ENSMUST00000029679.4	849	3	2655	0	2289	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGTGGTTATAAGACTGT	NA	False	NA	-12	True	ATTAAA	-22	NA	89323035	89322778	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_-_89322800_89323000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028452	chr3	-	861	3	FSM	ENSMUSG00000028044.7	ENSMUST00000107422.2	766	3	-10	-85	-10	0	multi-exon	FALSE	canonical	3	67	junction_2	1287.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGTGGTTATAAGACTGT	NA	False	NA	-12	True	ATTAAA	-22	NA	89325334	89322778	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_89323271_89323580_89323709_89325093
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028460	chr3	+	3533	12	FSM	ENSMUSG00000042626.14	ENSMUST00000094378.10	2617	12	0	-916	0	0	multi-exon	TRUE	canonical	3	501	junction_1	37.6308735565373	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89328934	89337322	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028477	chr3	-	1172	7	FSM	ENSMUSG00000027944.14	ENSMUST00000079724.9	1139	7	-33	0	-33	0	multi-exon	FALSE	canonical	3	1573	junction_5	145.593040126695	1270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGTTTTGTCAAGGTC	7157	False	NA	NA	False	AATAAA	-26	NA	89906037	89902752	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905834
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028506	chr3	-	162	1	Genic_Genomic	ENSMUSG00000042520.17	novel	NA	NA	NA	NA	-2368	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTATGCTTTTATGTCT	NA	False	NA	NA	False	AATAAA	-19	NA	89913461	89913299	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr3_-_89913300_89913500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028515	chr3	+	2185	9	NIC	ENSMUSG00000027940.19	novel	2190	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	65	junction_8	1429.67163515788	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGGCTTGACTTTGTTAA	NA	False	NA	19	True	AATAAA	-22	NA	89986971	90008209	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_89998319_89998399_90006834
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028522	chr3	+	1050	1	ISM	ENSMUSG00000027940.19	ENSMUST00000119570.8	2233	9	27202	0	9794	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGGCTTGACTTTGTTAA	6318	False	NA	19	True	AATAAA	-22	NA	90007159	90008209	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_90007200_90008200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028528	chr3	-	654	3	FSM	ENSMUSG00000090733.7	ENSMUST00000199031.5	640	3	-14	0	0	0	multi-exon	TRUE	canonical	3	15374	junction_1	2726.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120955	90119973	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_90120061_90120240_90120352_90120499
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028529	chr3	-	575	4	FSM	ENSMUSG00000090733.7	ENSMUST00000200305.2	546	4	-25	-4	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8789.54951443285	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120955	90119973	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120687
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028538	chr3	+	1108	5	FSM	ENSMUSG00000027937.16	ENSMUST00000029546.15	1101	5	-5	-2	-5	2	multi-exon	FALSE	canonical	3	314	junction_4	18.2260116317312	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGTGTAATCATTTGGC	NA	False	NA	6	True	AATAAA	-16	NA	90138898	90143147	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_90139348_90139501_90139540_90139735_90139819_90141229_90141310_90142689
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028560	chr3	-	964	3	ISM	ENSMUSG00000027931.13	ENSMUST00000029540.13	4066	22	10769	0	2379	0	intron_retention	FALSE	canonical	3	97	junction_2	38	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90362404	90357897	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_-_90358490_90358612_90358705_90362124
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028566	chr3	+	2055	14	FSM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	-28	0	-7	0	multi-exon	FALSE	canonical	3	1252	junction_8	67.3276893371464	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTACAAGCATTTATTTA	NA	False	NA	18	True	AATAAA	-23	NA	90383425	90395686	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028572	chr3	+	839	1	ISM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	11394	0	6862	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTACAAGCATTTATTTA	NA	False	NA	18	True	AATAAA	-23	NA	90394847	90395686	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_90394800_90395700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028589	chr3	-	1154	1	NIC	ENSMUSG00000001017.16	novel	3118	4	NA	NA	8913	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90407416	90406262	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_-_90406300_90407400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028597	chr3	+	338	3	NNC	ENSMUSG00000042312.11	novel	715	4	NA	NA	556	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	185	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90422297	90431888	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr3_+_90422327_90423269_90423350_90431659
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028601	chr3	+	1072	3	FSM	ENSMUSG00000074457.11	ENSMUST00000098911.10	1127	3	58	-3	-3	0	multi-exon	FALSE	canonical	3	11	junction_1	6	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGCTGCTTCCTTTGT	NA	False	NA	11	True	AATAAA	-22	NA	90444618	90450458	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_90444725_90449300_90449480_90449671
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028610	chr3	+	1875	1	FSM	ENSMUSG00000091421.4	ENSMUST00000169025.4	733	1	-113	-1029	-113	1029	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAATGTGAGAGAGATGAA	NA	False	NA	NA	False	NA	NA	NA	92596619	92598494	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_92596600_92598500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028712	chr3	+	910	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-352	4	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	52.0917993119412	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTGTCTTCCTCTATTA	NA	False	NA	12	True	AGTAAA	-26	NA	95334629	95338402	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr3_+_95334711_95335864_95336134_95337597_95337750_95337994
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028722	chr3	+	1292	1	ISM	ENSMUSG00000015522.19	ENSMUST00000090804.12	4325	21	61559	0	6544	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTGTGTTGTGTGATA	NA	False	NA	NA	False	TATAAA	-1	NA	95403259	95404551	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_95403300_95404600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028726	chr3	+	1683	15	FSM	ENSMUSG00000028109.15	ENSMUST00000029754.13	1385	15	-29	-269	-28	190	multi-exon	FALSE	canonical	3	195	junction_6	50.4359059821958	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGTGTGTTATTAACAAC	NA	False	NA	9	True	ATTAAA	-20	NA	95466959	95495172	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028732	chr3	+	1243	14	NIC	ENSMUSG00000028109.15	novel	1444	16	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_2	92.4469462438997	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTTTACCTGAGATA	NA	False	NA	NA	False	AATAAA	-15	NA	95466989	95494907	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_+_95467044_95468538_95468592_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028769	chr3	-	2443	16	FSM	ENSMUSG00000015748.14	ENSMUST00000015892.14	2933	16	0	490	0	4	multi-exon	FALSE	canonical	3	400	junction_5	22.8428447343048	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATATTTTTCATATGGT	NA	False	NA	-30	True	ATTAAA	-20	NA	95763197	95737925	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028823	chr3	+	201	1	Intergenic	novelGene_214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATACTCTGCCAGTTGTA	9067	False	NA	NA	False	NA	NA	NA	96230228	96230429	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_96230200_96230400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028837	chr3	+	537	1	ISM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	3369	21	1272	4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATGTTCTTTTCTTGTCT	NA	False	NA	24	True	AATAAA	-19	NA	96468641	96469178	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_96468600_96469200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028840	chr3	-	1416	8	FSM	ENSMUSG00000028104.15	ENSMUST00000091924.10	1427	8	11	0	11	0	multi-exon	FALSE	canonical	3	65	junction_6	13.8534604827436	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTAACAGAGTGATGT	NA	False	NA	0	True	NA	NA	NA	96501486	96485187	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96489403_96489572_96501399
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028841	chr3	-	1237	7	FSM	ENSMUSG00000028104.15	ENSMUST00000145001.2	607	7	0	-630	0	0	multi-exon	TRUE	canonical	3	25	junction_6	26.9794160220137	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTAACAGAGTGATGT	NA	False	NA	0	True	NA	NA	NA	96501475	96485187	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96501399
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028874	chr3	+	421	1	ISM	ENSMUSG00000028102.16	ENSMUST00000144962.8	2235	4	8933	637	7256	3	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTATTCAATTCAAGA	NA	False	NA	12	True	ATTAAA	-19	NA	96551624	96552045	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_96551600_96552000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028882	chr3	-	1096	8	FSM	ENSMUSG00000028100.12	ENSMUST00000171249.6	1110	8	15	-1	0	0	multi-exon	FALSE	canonical	3	52	junction_1	6.53405521487387	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTTTTTTAAGTGA	NA	False	NA	-1	True	AATAAA	-14	NA	96615863	96613383	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615099_96615126_96615307_96615492_96615643
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028942	chr3	+	198	1	Intergenic	novelGene_215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTTCATTGTTGTAAAG	NA	False	NA	NA	False	NA	NA	NA	100754597	100754795	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_100754600_100754800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028951	chr3	-	171	1	ISM	ENSMUSG00000033161.11	ENSMUST00000036493.8	3679	23	28291	4	1167	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTTTGAGTCCTTGTC	NA	False	NA	-10	True	AATAAA	-20	NA	101483709	101483538	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_-_101483500_101483700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000028988	chr3	-	419	2	Antisense	novelGene_ENSMUSG00000007379.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTGTGAAAATCTACCT	NA	False	NA	NA	False	AATAAA	-18	NA	103029403	103026112	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Antisense_chr3_-_103026360_103029231
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029005	chr3	-	216	1	Intergenic	novelGene_216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAAGACTCAGTAAAGTG	NA	False	NA	NA	False	NA	NA	NA	103193735	103193519	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_-_103193500_103193700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029012	chr3	+	3222	5	FSM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	0	1204	0	-1204	multi-exon	FALSE	canonical	3	470	junction_2	50.2462685181696	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTCTTCCGCATGTTTAT	NA	False	NA	23	True	AATAAA	-24	NA	104545983	104564574	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_104546145_104556573_104556834_104558201_104558346_104560057_104560904_104562763
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029023	chr3	+	1160	6	NNC	ENSMUSG00000002233.14	novel	1202	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	108.939249125373	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104696349	104701775	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr3_+_104696400_104698799_104698904_104699204_104699369_104699880_104700002_104700215_104700347_104701185
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029029	chr3	+	177	1	ISM	ENSMUSG00000002233.14	ENSMUST00000002303.12	1202	5	5395	0	2300	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104701598	104701775	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_104701600_104701800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029032	chr3	-	3541	20	ISM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	24	-4	20	4	intron_retention	TRUE	canonical	3	1102	junction_11	86.7727314610285	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	-21	True	AAGAAA	-25	NA	104725597	104702147	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029045	chr3	-	2782	11	FSM	ENSMUSG00000027905.16	ENSMUST00000090680.11	2905	11	123	0	1	0	multi-exon	FALSE	canonical	3	276	junction_2	22.5302019520465	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGTTTATTCTGTCGAG	NA	False	NA	0	True	AATAAA	-23	NA	105594767	105585585	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_105587029_105587659_105587762_105587865_105587972_105588296_105588380_105590041_105590101_105590192_105590332_105590468_105590612_105590731_105590847_105591600_105591770_105593954_105594050_105594439
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029081	chr3	+	763	4	NNC	ENSMUSG00000087260.6	novel	743	4	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	550.836333829448	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTTCATTTCTGGTCT	3152	False	NA	12	True	AATAAA	-16	NA	107186315	107191398	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr3_+_107186430_107187185_107187248_107189203_107189343_107190950
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029099	chr3	-	1234	8	FSM	ENSMUSG00000004038.10	ENSMUST00000004136.10	1311	8	77	0	77	0	multi-exon	FALSE	canonical	3	154	junction_5	50.6947648547014	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876522	107871011	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029152	chr3	+	1006	9	NNC	ENSMUSG00000068749.10	novel	1239	9	NA	NA	237	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	973.551544282582	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTAATAGTCTGTGATC	NA	False	NA	11	True	AATAAA	-15	NA	108164478	108187290	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr3_+_108164626_108169001_108169069_108172381_108172509_108173748_108173817_108175108_108175217_108175348_108175408_108176143_108176247_108179606_108179694_108187050
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029163	chr3	+	1742	7	NIC	ENSMUSG00000068744.13	novel	1687	8	NA	NA	-9	-10	intron_retention	FALSE	canonical	3	155	junction_1	118.602510747267	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTCTGTATATCTGAA	7023	False	NA	6	True	AATAAA	-14	NA	108291145	108295485	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_+_108291212_108291551_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029189	chr3	+	1651	4	FSM	ENSMUSG00000048100.14	ENSMUST00000056292.8	1655	4	1	3	1	-3	multi-exon	TRUE	canonical	2	8	junction_1	76.856287243718	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTACTTGAGTTTGTGTT	NA	False	NA	11	True	AATAAA	-20	NA	108479015	108489382	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_108479430_108480195_108480275_108485431_108485530_108488322
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029195	chr3	+	2041	12	FSM	ENSMUSG00000027884.17	ENSMUST00000106609.8	2043	12	2	0	2	0	multi-exon	TRUE	canonical	3	66	junction_1	36.8117839559091	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6598	False	NA	6	True	AATAAA	-18	NA	108561230	108586156	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_108561297_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029205	chr3	-	1694	1	ISM	ENSMUSG00000027881.15	ENSMUST00000129273.8	3050	7	7198	0	1087	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGGTGTTGGTTTCCCC	6561	False	NA	-7	True	AATAAA	-20	NA	108811814	108810120	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_-_108810100_108811800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029214	chr3	-	1827	15	FSM	ENSMUSG00000027981.15	ENSMUST00000106536.8	1839	15	12	0	12	0	multi-exon	FALSE	canonical	3	86	junction_8	14.9497457489813	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTCTAATTTTTCATTA	NA	False	NA	-1	True	AATAAA	-16	NA	113423786	113399112	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_113399297_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029239	chr3	+	3258	11	FSM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	43	0	-6	0	multi-exon	FALSE	canonical	3	173	junction_7	26.1091937830336	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTATGCCTTCATAGTA	NA	False	NA	10	True	AATAAA	-19	NA	116306761	116343630	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029245	chr3	-	1877	11	ISM	ENSMUSG00000033439.13	ENSMUST00000041524.11	3402	12	19694	-4	-6	4	3prime_fragment	FALSE	canonical	3	87	junction_7	13.8524366087703	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGTGAGGCTTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	116388542	116374737	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029264	chr3	-	218	1	NIC	ENSMUSG00000028133.18	novel	1484	5	NA	NA	761	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTCATGTTTACTTT	NA	False	NA	1	True	ATTAAA	-17	NA	120949708	120949490	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_-_120949500_120949700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029270	chr3	+	2098	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	-49	0	-49	0	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	1504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGCTGGTTATTTTCT	NA	False	NA	27	True	AATAAA	-27	NA	121220096	121251856	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029285	chr3	-	3383	23	FSM	ENSMUSG00000028127.11	ENSMUST00000029770.8	3489	23	106	0	1	0	multi-exon	TRUE	canonical	3	145	junction_14	20.5277981251709	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATGTGCCTGACCTTTT	7237	False	NA	-1	True	ATTAAA	-22	NA	121608845	121552555	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_121553959_121555063_121555121_121558649_121558755_121562270_121562391_121562815_121562906_121563000_121563067_121563163_121563242_121565951_121566016_121567637_121567711_121567790_121567883_121569079_121569172_121569265_121569364_121569450_121569521_121570645_121570716_121573203_121573347_121575576_121575634_121577659_121577784_121578121_121578220_121579650_121579721_121585382_121585472_121586452_121586552_121590097_121590135_121608657
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029289	chr3	+	2448	7	FSM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	-19	0	-19	0	multi-exon	FALSE	canonical	3	1082	junction_6	112.264073604258	377	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGCCTCTTGGAATAA	NA	False	NA	23	True	AATAAA	-19	NA	122068017	122078920	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_122068128_122068846_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029293	chr3	-	841	1	ISM	ENSMUSG00000039735.17	ENSMUST00000197259.5	3553	12	24322	0	15553	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTACTTATCTTTTAC	NA	False	NA	1	True	AATAAA	-24	NA	122333208	122332367	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_-_122332400_122333200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029315	chr3	-	785	1	FSM	ENSMUSG00000104960.2	ENSMUST00000198509.2	776	1	-6	-3	-3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCCTGTTTCTGGA	NA	False	NA	48	True	AATAAA	-21	NA	123301985	123301200	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_123301200_123302000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029353	chr3	-	1036	7	NNC	ENSMUSG00000028010.17	novel	1271	7	NA	NA	-203	0	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_6	620.417444593199	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTTATTGAACGGAACCTA	NA	False	NA	-1	True	AATAAA	-22	NA	129624784	129618560	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624740
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029356	chr3	-	300	1	NIC	ENSMUSG00000028010.17	novel	1271	7	NA	NA	463	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTTATTGAACGGAACCTA	NA	False	NA	-1	True	AATAAA	-22	NA	129618860	129618560	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_-_129618600_129618900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029361	chr3	+	1466	7	FSM	ENSMUSG00000027997.10	ENSMUST00000029626.9	1456	7	-10	0	-10	0	multi-exon	FALSE	canonical	3	125	junction_5	8.11206234909197	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGGCACTCTGAGGAT	NA	False	NA	NA	False	AATAAA	-14	NA	129695063	129707752	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_129695156_129699114_129699157_129699551_129699702_129700049_129700127_129704171_129704348_129705766_129705924_129706980
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029369	chr3	-	1073	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	-6	0	-6	0	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	1187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGGACTTTTTGTTGT	NA	False	NA	1	True	AATAAA	-24	NA	130503099	130489560	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029383	chr3	-	515	4	FSM	ENSMUSG00000062006.13	ENSMUST00000135691.2	477	4	-6	-32	-1	-1	multi-exon	FALSE	canonical	3	6284	junction_3	871.596619237745	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCGTTATCTGTGATTT	NA	False	NA	-12	True	AATAAA	-19	NA	130523997	130520480	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_130520609_130522396_130522501_130522699_130522952_130523966
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029390	chr3	-	692	6	NNC	ENSMUSG00000062006.13	novel	480	5	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	4156.11671635915	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTTCCGTTATCTGTGATT	NA	False	NA	-13	True	AATAAA	-18	NA	130523990	130520481	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523176_130523440_130523966
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029411	chr3	-	185	1	Intergenic	novelGene_217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTTATTATATTTATTT	NA	False	NA	NA	False	NA	NA	NA	130992207	130992022	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_-_130992000_130992200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029444	chr3	+	195	1	Intergenic	novelGene_218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTGACTTTCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	134770092	134770287	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_134770100_134770300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029489	chr3	+	221	1	ISM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	29413	0	5520	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTCTTACTCAGTAAT	NA	False	NA	5	True	ATTAAA	-18	NA	135173738	135173959	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_135173700_135174000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029503	chr3	+	1212	4	ISM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	0	-2	0	intron_retention	FALSE	canonical	3	13832	junction_1	803.393220451023	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137570349	137572683	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029510	chr3	+	538	1	NIC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	1257	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137572145	137572683	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_+_137572100_137572700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029547	chr3	+	1564	6	NIC	ENSMUSG00000028156.13	novel	856	8	NA	NA	-9	243	combination_of_known_splicesites	FALSE	canonical	3	22	junction_3	780.454482977707	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAACTAGATTTGTCCTTT	NA	False	NA	24	True	AATAAA	-25	NA	138233036	138262218	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_+_138233076_138252081_138252189_138253419_138253516_138256653_138256768_138259342_138259483_138261150
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029567	chr3	+	1331	7	FSM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	124	0	-54	0	multi-exon	FALSE	canonical	3	152	junction_1	21.5129160170246	300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTGTTATAGTATTAAT	NA	False	NA	8	True	AATAAA	-15	NA	142470929	142489367	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_+_142471050_142477146_142477254_142483951_142484086_142485452_142485600_142485730_142485861_142487100_142487383_142488956
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029570	chr3	+	83	1	Intergenic	novelGene_219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGCATAGGGCATGAACA	NA	False	NA	NA	False	AATAAA	-40	NA	142669496	142669579	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr3_+_142669500_142669600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029595	chr3	+	1163	11	NIC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	4	1	combination_of_known_junctions	TRUE	canonical	3	22	junction_1	233.890765102002	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTGCATGTTACTGCCT	NA	False	NA	50	True	ATTAAA	-24	NA	145281990	145309869	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_+_145282115_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029599	chr3	-	2021	5	FSM	ENSMUSG00000028195.5	ENSMUST00000029846.5	2019	5	0	-2	0	2	multi-exon	FALSE	canonical	3	41	junction_2	2.58602010819715	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAATGTATGTTGTTTGG	NA	False	NA	NA	False	AATAAA	-18	NA	145355736	145352728	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_145353724_145353951_145354167_145354287_145354633_145354976_145355191_145355484
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029655	chr3	+	490	1	ISM	ENSMUSG00000025437.16	ENSMUST00000026507.13	4153	24	46367	278	10309	1	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTGAATGTTGAATTTA	NA	False	NA	NA	False	AATAAA	-18	NA	152098481	152098971	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_152098500_152099000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029661	chr3	-	2352	3	NNC	ENSMUSG00000052544.10	novel	416	3	NA	NA	-134273	1899	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	46	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCGTTGTTTTCTCTC	NA	False	NA	-4	True	AATAAA	-24	NA	153065693	152909103	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr3_-_152911229_152912254_152912363_153065574
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029674	chr3	-	1411	10	NIC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	240.631627694519	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTATATAGCTTTTT	6154	False	NA	0	True	AATAAA	-17	NA	153618592	153612923	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029676	chr3	-	1346	9	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_8	331.806584285183	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTATATAGCTTTTT	6157	False	NA	0	True	AATAAA	-17	NA	153618589	153612923	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618550
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029694	chr3	-	2307	9	FSM	ENSMUSG00000065463.3_ENSMUSG00000038975.15	ENSMUST00000196266.5	1271	9	-871	-165	3	0	multi-exon	FALSE	canonical	3	426	junction_3	203.564140690348	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6157	False	NA	-2	True	AATAAA	-15	NA	153618589	153612925	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029696	chr3	-	1328	9	NIC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_8	345.260771012289	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6157	False	NA	-2	True	AATAAA	-15	NA	153618589	153612925	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618550
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029726	chr3	+	1281	1	ISM	ENSMUSG00000028180.19	ENSMUST00000106058.8	2924	10	12901	69	6410	5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTGTTGTTTATTAGAA	NA	False	NA	16	True	AATAAA	-17	NA	157252697	157253978	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_+_157252700_157254000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029733	chr3	-	1171	1	ISM	ENSMUSG00000055436.19	ENSMUST00000121326.8	3106	13	24554	442	435	4	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTGTAGAGCTGGGTT	NA	False	NA	-23	True	AATAAA	-21	NA	157717722	157716551	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr3_-_157716600_157717700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029740	chr3	-	2627	13	NNC	ENSMUSG00000055436.19	novel	3106	13	NA	NA	2	0	at_least_one_novel_splicesite	TRUE	canonical	3	73	junction_1	177.599795889522	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	-27	True	AATAAA	-17	NA	157742246	157716555	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr3_-_157717838_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029766	chr4	-	2410	8	FSM	ENSMUSG00000028232.14	ENSMUST00000029891.12	2690	8	44	236	0	-236	multi-exon	FALSE	canonical	3	50	junction_4	11.6233403467474	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTCTAGTAAAAATGTTAT	-11	True	NA	NA	False	AATAAA	-17	NA	3574809	3549276	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363_3569753_3570320_3570373_3574703
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029771	chr4	+	517	4	ISM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	4	31125	4	1563	5prime_fragment	FALSE	canonical	3	157	junction_3	13.1402688962847	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAAACACCAGAAGCGG	-14	True	NA	NA	False	AATAAA	-20	NA	3574878	3585494	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029802	chr4	+	625	5	FSM	ENSMUSG00000042198.13	ENSMUST00000121651.8	620	5	0	-5	0	0	multi-exon	FALSE	canonical	3	48	junction_1	167.916645988419	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTTGGGGTTTTTTTT	-5	True	NA	28	True	ATTAAA	-21	NA	3938913	3943526	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_3939132_3939423_3939527_3941245_3941312_3942720_3942820_3943387
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029804	chr4	+	1238	4	ISM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	0	2	0	0	intron_retention	FALSE	canonical	3	280	junction_1	77.5857948052062	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTTGGGGTTTTTTTT	-5	True	NA	28	True	ATTAAA	-21	NA	3938913	3943526	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029813	chr4	-	1913	1	ISM	ENSMUSG00000066324.3	ENSMUST00000084949.3	6543	5	27412	1547	27412	-1547	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTCTAATTCTCTGGA	NA	False	NA	-8	True	AATAAA	-19	NA	4765943	4764030	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_4764000_4765900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029814	chr4	+	352	1	ISM	ENSMUSG00000049119.15	ENSMUST00000054857.13	3210	3	155581	1048	1618	107	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGAGCAGAATCTTTTT	NA	False	NA	9	True	ATTAAA	-23	NA	5799701	5800053	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_5799700_5800100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029816	chr4	+	1583	8	FSM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	-1	5060	-1	-5060	multi-exon	TRUE	canonical	3	103	junction_2	16.4614577676685	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATCAGCTCTTGGTAAGA	-11	True	NA	NA	False	TATAAA	-40	NA	6191096	6216628	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_6191214_6196410_6196515_6202291_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029822	chr4	+	191	1	Intergenic	novelGene_220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTATCTTCCCCCATCT	NA	False	NA	NA	False	NA	NA	NA	6226088	6226279	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_6226100_6226300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029827	chr4	+	2087	9	FSM	ENSMUSG00000028249.16	ENSMUST00000103008.12	2086	9	3	-4	3	4	multi-exon	FALSE	canonical	3	130	junction_4	110.946425697271	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGTCTGTGCCTGCATC	-2	True	NA	17	True	ATTAAA	-22	NA	6365679	6395659	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385028_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029846	chr4	-	2805	2	FSM	ENSMUSG00000049969.4	ENSMUST00000054776.4	2977	2	172	0	172	0	multi-exon	FALSE	canonical	3	844	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTTTTTATATTG	141	False	NA	-1	True	AATAAA	-17	NA	11007504	10988661	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_10991355_11007392
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029848	chr4	-	215	1	Intergenic	novelGene_221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTCTGATGACCAAAGT	NA	False	NA	1	True	NA	NA	NA	11046164	11045949	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_-_11045900_11046200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029854	chr4	+	210	1	Intergenic	novelGene_222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTTTTTATGTAGTCGA	NA	False	NA	NA	False	NA	NA	NA	11121836	11122046	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_11121800_11122000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029866	chr4	+	212	1	Intergenic	novelGene_223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGGAAAACCTACAGGA	6250	False	NA	NA	False	NA	NA	NA	11552331	11552543	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_11552300_11552500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029905	chr4	+	2519	16	FSM	ENSMUSG00000028224.15	ENSMUST00000029879.15	2533	16	14	0	14	0	multi-exon	TRUE	canonical	3	165	junction_3	27.9629914152418	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTGTGTGGTAACGT	-31	True	NA	9	True	AATAAA	-15	NA	15957938	15992589	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_15958111_15962310_15962445_15963771_15963921_15964246_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029934	chr4	-	987	1	ISM	ENSMUSG00000028251.6	ENSMUST00000029915.6	1588	4	8844	0	8844	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGTATTTCTTTAA	8827	False	NA	0	True	AATAAA	-24	NA	21758368	21757381	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_21757400_21758400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029960	chr4	+	2135	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	-4	1501	-4	-5	multi-exon	FALSE	canonical	3	446	junction_2	23.5	239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCACTTTTCTGGTTTTTT	3203	False	NA	9	True	AATAAA	-22	NA	24898078	24903500	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_24898303_24898572_24898677_24901693
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029975	chr4	+	193	1	Intergenic	novelGene_224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGGAAATTACATAGCACA	NA	False	NA	NA	False	NA	NA	NA	32747168	32747361	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_32747200_32747400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029977	chr4	+	285	1	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	117802	2	12056	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCAGGGTTTACTTTGGTT	6582	False	NA	18	True	ATTAAA	-21	NA	32774920	32775205	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_32774900_32775200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000029991	chr4	+	261	1	ISM	ENSMUSG00000028277.14	ENSMUST00000124992.8	3530	8	18353	2334	13041	-2334	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTGTTTACAAAAAGATT	4587	False	NA	25	True	ATTAAA	-25	NA	33049768	33050029	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_33049800_33050000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030009	chr4	-	2278	20	FSM	ENSMUSG00000040044.12	ENSMUST00000108142.8	2266	20	-12	0	-12	0	multi-exon	FALSE	canonical	3	292	junction_6	92.190426792828	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	-17	True	NA	-17	True	CATAAA	-21	NA	34614925	34570795	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030022	chr4	-	2067	8	FSM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	-24	-4	-24	4	multi-exon	FALSE	canonical	3	108	junction_4	17.6831523646385	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTTACTTTGTTTTA	-2	True	NA	-9	True	AATAAA	-18	NA	34687462	34663252	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030027	chr4	-	768	3	FSM	ENSMUSG00000028295.15	ENSMUST00000029972.4	786	3	18	0	18	0	multi-exon	FALSE	canonical	3	160	junction_2	5.5	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	34778405	34768663	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_34769148_34771257_34771415_34778278
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030035	chr4	-	3151	11	FSM	ENSMUSG00000028300.15	ENSMUST00000108127.4	3193	11	44	-2	-2	0	multi-exon	FALSE	canonical	3	67	junction_8	10.8355895086516	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGTTTTAGTTCATTAT	-13	True	NA	-3	True	AATAAA	-18	NA	35225836	35191284	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413_35218917_35225787
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030037	chr4	+	434	2	Intergenic	novelGene_225	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGACCGCTGCTGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	37224060	37225130	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_37224096_37224731
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030040	chr4	+	208	1	Intergenic	novelGene_226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTAGGGCTGAATTGTCA	NA	False	NA	NA	False	NA	NA	NA	38983272	38983480	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_38983300_38983500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030043	chr4	+	3485	21	FSM	ENSMUSG00000028405.10	ENSMUST00000102973.4	3832	21	348	-1	348	1	multi-exon	TRUE	canonical	3	234	junction_5	35.2306684580353	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGGCTTTGGAGTTGAG	22	True	NA	10	True	ATTAAA	-18	NA	40143428	40198339	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_40143542_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803_40182940_40183567_40183653_40184900_40185058_40186315_40186441_40188165_40188271_40189343_40189487_40190736_40190885_40193738_40193862_40196244_40196431_40197553
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030049	chr4	+	202	1	Intergenic	novelGene_227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTGAAGAAGATTCCAAGG	NA	False	NA	NA	False	NA	NA	NA	40214111	40214313	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_40214100_40214300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030059	chr4	-	615	4	FSM	ENSMUSG00000071014.11	ENSMUST00000095128.10	659	4	-19	63	-19	11	multi-exon	FALSE	canonical	3	2502	junction_3	28.8251433455046	773	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTTACTGTCCAAAGGTT	NA	False	NA	0	True	AATAAA	-28	NA	40279440	40270653	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_40270848_40272809_40272855_40277652_40277746_40279157
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030068	chr4	+	227	1	Intergenic	novelGene_228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAGTAAGCGACCTCCA	NA	False	NA	NA	False	NA	NA	NA	40691907	40692134	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_40691900_40692100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030112	chr4	+	1558	5	FSM	ENSMUSG00000036241.4	ENSMUST00000040008.4	3600	5	282	1760	282	584	multi-exon	FALSE	canonical	3	428	junction_4	37.5857353260516	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTGGTTGCTATTTATT	-7	True	NA	36	True	AATAAA	-25	NA	41136024	41191620	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_41136247_41174040_41174128_41183244_41183343_41189151_41189287_41190604
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030126	chr4	-	3438	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	4	0	4	0	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTTTGAGTGACTATATA	-2	True	NA	0	True	AATAAA	-18	NA	41314885	41291299	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030133	chr4	+	873	3	FSM	ENSMUSG00000028443.7	ENSMUST00000030154.7	845	3	-28	0	-28	0	multi-exon	FALSE	canonical	3	137	junction_1	26.5	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGATGCTTTCTTGGAC	NA	False	NA	32	True	AATAAA	-28	NA	41465122	41480926	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_41465181_41477513_41477648_41480245
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030136	chr4	+	831	3	NNC	ENSMUSG00000028443.7	novel	845	3	NA	NA	-3	-13	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_1	88.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCCCTTTCAACCTGTGA	1	True	NA	19	True	AATAAA	-15	NA	41465147	41480913	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_41465181_41477517_41477648_41480245
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030140	chr4	-	872	2	FSM	ENSMUSG00000036114.4	ENSMUST00000038434.4	856	2	-7	-9	-7	9	multi-exon	FALSE	canonical	3	191	junction_1	0	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTAAGTGGGACTGC	9613	False	NA	-8	True	AATAAA	-23	NA	41713541	41712023	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_41712815_41713460
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030186	chr4	-	656	1	ISM	ENSMUSG00000028452.8	ENSMUST00000030164.8	3316	17	19889	0	5203	0	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCGTTCTGGCCACTAT	NA	False	NA	-15	True	AATAAA	-18	NA	42980618	42979962	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_42980000_42980600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030194	chr4	-	112	1	ISM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	3580	329	1707	7	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCTCATTGATTGGGGG	3301	False	NA	0	True	AATAAA	-23	NA	43028130	43028018	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_43028000_43028100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030206	chr4	+	832	6	FSM	ENSMUSG00000028461.13	ENSMUST00000030181.12	817	6	-15	0	-15	0	multi-exon	FALSE	canonical	3	301	junction_5	16.9162643630324	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	-41	True	NA	14	True	AGTAAA	-45	NA	43493346	43495921	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508_43495622_43495696
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030212	chr4	-	1636	9	FSM	ENSMUSG00000051517.15	ENSMUST00000054538.13	1659	9	26	-3	-8	3	multi-exon	FALSE	canonical	3	105	junction_3	13.833270582187	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTGTCTAAATCACGAGA	-22	True	NA	0	True	AATAAA	-21	NA	43499669	43496138	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_43496721_43496820_43496910_43497086_43497317_43497581_43497711_43497958_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030227	chr4	-	631	5	NNC	ENSMUSG00000028470.11	novel	610	5	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	311.576134355634	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATCCCTGTCTTAAA	0	True	NA	-5	True	AATAAA	-16	NA	43656454	43654226	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_-_43654412_43654512_43654617_43654715_43654821_43654905_43655047_43656358
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030234	chr4	-	608	5	FSM	ENSMUSG00000028470.11	ENSMUST00000151238.8	600	5	-8	0	-3	0	multi-exon	FALSE	canonical	3	13	junction_1	305.186316043167	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATCCCTGTCTTAAA	3	True	NA	-5	True	AATAAA	-16	NA	43656451	43654226	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_43654423_43654512_43654586_43654715_43654821_43654905_43655047_43656358
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030236	chr4	+	511	1	FSM	ENSMUSG00000043770.11	ENSMUST00000102482.5	297	1	-124	-90	-124	90	mono-exon	FALSE	NA	NA	NA	NA	NA	456	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAGAGATGAAGGGGAGA	8380	False	NA	NA	False	ATTAAA	-33	NA	43663918	43664429	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_43663900_43664400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030250	chr4	+	1067	5	FSM	ENSMUSG00000028478.19	ENSMUST00000107845.4	1031	5	-36	0	7	0	multi-exon	FALSE	canonical	3	59	junction_1	565.255860208455	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	8203	False	NA	21	True	AATAAA	-21	NA	44012649	44032846	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_44013003_44018812_44018851_44019873_44019992_44025448_44025561_44032400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030264	chr4	+	485	1	ISM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	62936	379	60244	-379	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGACTATTTGGAGTGT	1542	False	NA	26	True	AATAAA	-27	NA	44363811	44364296	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_44363800_44364300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030267	chr4	+	159	1	ISM	ENSMUSG00000035649.18	ENSMUST00000147272.8	4251	3	8935	4	6058	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTGTTTATTGTTACA	7883	False	NA	NA	False	AATAAA	-22	NA	44932052	44932211	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_44932100_44932200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030311	chr4	+	573	1	NIC	ENSMUSG00000028333.11	novel	1716	7	NA	NA	21183	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGTTGTACTCTCACAT	687	False	NA	8	True	AATAAA	-20	NA	46472084	46472657	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr4_+_46472100_46472700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030322	chr4	+	211	1	Intergenic	novelGene_229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTCACTCACAGCAAATC	NA	False	NA	NA	False	TTTAAA	-14	NA	46645170	46645381	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_46645200_46645400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030346	chr4	+	582	3	Intergenic	novelGene_230	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTTTGTCTTGGTTCCTT	NA	False	NA	17	True	NA	NA	NA	48513813	48519022	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_48514080_48514498_48514586_48518793
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030358	chr4	-	2130	2	FSM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	-12	-4	-12	4	multi-exon	FALSE	canonical	3	1281	junction_1	0	636	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTAAAGTGTTATTGCTA	NA	False	NA	4	True	AATAAA	-25	NA	49521105	49512591	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_49514578_49520961
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030375	chr4	+	1668	1	ISM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	47350	0	47324	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTAGTACTACAGTTT	NA	False	NA	21	True	ATTAAA	-21	NA	52486592	52488260	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_52486600_52488300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030413	chr4	-	1807	5	FSM	ENSMUSG00000038816.15	ENSMUST00000131231.2	654	5	52	-1205	52	0	multi-exon	FALSE	canonical	3	19	junction_4	112.62548557054	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACCGACTGGCTTAAT	NA	False	NA	-6	True	AATAAA	-21	NA	56814267	56810934	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56814169
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030431	chr4	-	215	1	NIC	ENSMUSG00000028367.6	novel	1051	5	NA	NA	12440	-384	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTGATGTGTTTTAATA	9555	False	NA	-3	True	AATAAA	-25	NA	57943971	57943756	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr4_-_57943800_57944000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030445	chr4	+	242	1	Intergenic	novelGene_231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTAGGGCCATGCAGTG	223	False	NA	NA	False	NA	NA	NA	59197785	59198027	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_59197800_59198000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030461	chr4	-	1544	3	FSM	ENSMUSG00000038544.15	ENSMUST00000128548.2	1654	3	-32	142	-4	-142	multi-exon	FALSE	canonical	3	236	junction_2	17	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGGTTATTCAGTTTG	-32	True	NA	-3	True	NA	NA	NA	59783870	59774229	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_59775550_59782253_59782335_59783727
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030478	chr4	-	1612	4	FSM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	-15	-778	-15	778	multi-exon	FALSE	canonical	3	361	junction_3	9.67241208569794	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGACTCTTTATTATTG	2649	False	NA	NA	False	AATAAA	-22	NA	62326894	62312041	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_62313259_62320960_62321153_62322692_62322790_62326788
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030523	chr4	+	2114	1	Intergenic	novelGene_232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAACGGATCTAGACA	NA	False	NA	NA	False	NA	NA	NA	66821213	66823327	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_66821200_66823300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030526	chr4	-	891	2	Genic_Genomic	ENSMUSG00000046341.6	novel	450	1	NA	NA	-92	451	multi-exon	FALSE	canonical	2	29	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAATTATAAGGGAAGGAT	NA	False	NA	NA	False	AATAAA	-38	NA	69844408	69843415	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr4_-_69844194_69844295
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030535	chr4	+	786	1	Genic_Genomic	ENSMUSG00000028397.14	novel	NA	NA	NA	NA	142266	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCTTCTGTCTGTCAA	NA	False	NA	15	True	ATTAAA	-16	NA	74323312	74324098	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr4_+_74323300_74324100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030537	chr4	-	765	2	FSM	ENSMUSG00000028398.9	ENSMUST00000030103.9	741	2	-21	-3	-21	3	multi-exon	FALSE	canonical	3	402	junction_1	0	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTCTTTTAATTTTTCT	NA	False	NA	NA	False	AATAAA	-19	NA	75196563	75195587	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_75196007_75196217
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030556	chr4	-	1989	7	ISM	ENSMUSG00000028484.17	ENSMUST00000030207.15	3251	16	22831	0	1336	0	3prime_fragment	FALSE	canonical	3	958	junction_5	83.2986594529988	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTATTAGTAAGTTATTAT	8136	False	NA	-4	True	ATTAAA	-16	NA	83381865	83373916	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_83375317_83376311_83376424_83378080_83378295_83378390_83378493_83378695_83378767_83379422_83379479_83381831
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030562	chr4	-	386	1	FSM	ENSMUSG00000066116.4	ENSMUST00000084445.4	354	1	-33	1	-33	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGCACATTTTTTAAGT	NA	False	NA	NA	False	NA	NA	NA	83423808	83423422	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_83423400_83423800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030569	chr4	+	1618	1	FSM	ENSMUSG00000070934.7	ENSMUST00000091064.8	1618	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTTTGAAATAATTTGC	NA	False	NA	19	True	AATAAA	-19	NA	86493904	86495522	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_86493900_86495500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030588	chr4	-	1194	1	NIC	ENSMUSG00000028495.15	novel	878	5	NA	NA	1477	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGCTTTCATTAATAGT	NA	False	NA	NA	False	AATAAA	-19	NA	86774092	86772898	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr4_-_86772900_86774100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030592	chr4	-	1745	4	FSM	ENSMUSG00000028495.15	ENSMUST00000123229.8	639	4	-16	-1090	-16	-2	multi-exon	FALSE	canonical	3	18159	junction_1	2678.8979077225	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGCTTTCATTAATAGT	NA	False	NA	NA	False	AATAAA	-19	NA	86775607	86772898	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_86774251_86774382_86774594_86774964_86775097_86775557
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030614	chr4	-	1898	1	ISM	ENSMUSG00000008489.19	ENSMUST00000107110.8	3671	6	119371	3	1919	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTGTGTATCTTTAAATA	NA	False	NA	-1	True	AATAAA	-17	NA	91140900	91139002	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_91139000_91140900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030628	chr4	-	1270	3	FSM	ENSMUSG00000062627.10	ENSMUST00000136130.2	704	3	0	-566	0	566	multi-exon	FALSE	canonical	3	64	junction_1	6	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTATAGCATATACTCTT	NA	False	NA	NA	False	NA	NA	NA	94867312	94860103	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_94861226_94863453_94863530_94867240
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030649	chr4	+	1200	1	ISM	ENSMUSG00000028560.12	ENSMUST00000030289.9	3577	9	10534	0	6247	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGATTTTTTTTTTTAA	NA	False	NA	18	True	AATAAA	-24	NA	98822580	98823780	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_98822600_98823800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030656	chr4	+	204	1	Intergenic	novelGene_233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTTAAAACGGTCTCAAAA	NA	False	NA	NA	False	NA	NA	NA	99481118	99481322	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_99481100_99481300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030680	chr4	+	2004	1	Genic_Genomic	ENSMUSG00000028527.19	novel	NA	NA	NA	NA	17771	2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGATGGAATTTCATAAAT	NA	False	NA	21	True	AATAAA	-19	NA	101322190	101324194	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr4_+_101322200_101324200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030698	chr4	-	1019	4	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9911	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	190.887983441133	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101760897	101747216	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_-_101747741_101747885_101748198_101760342_101760431_101760802
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030727	chr4	+	195	1	ISM	ENSMUSG00000034926.4	ENSMUST00000047973.4	4028	9	27881	0	27881	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTTGTCATTTATTCAG	NA	False	NA	18	True	AATAAA	-18	NA	106446115	106446310	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_106446100_106446300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030743	chr4	-	1497	7	FSM	ENSMUSG00000028622.12	ENSMUST00000030365.6	1498	7	2	-1	2	1	multi-exon	FALSE	canonical	3	549	junction_3	34.5976877840124	369	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTCTGTGAGATATTAG	NA	False	NA	-7	True	AATAAA	-24	NA	106924063	106913069	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030758	chr4	-	428	1	ISM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	19591	0	2039	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTTTTGAATTGCAGA	NA	False	NA	-5	True	AATAAA	-20	NA	107091138	107090710	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_107090700_107091100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030769	chr4	+	656	6	FSM	ENSMUSG00000063172.14	ENSMUST00000046558.8	608	6	-37	-11	-10	1	multi-exon	FALSE	canonical	3	140	junction_1	99.534114754691	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCATTTTTTTTATATAAA	NA	False	NA	9	True	ATTAAA	-20	NA	107111084	107137136	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_107111193_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030773	chr4	+	1329	10	FSM	ENSMUSG00000057375.14	ENSMUST00000075693.12	1321	10	-7	-1	-7	0	multi-exon	FALSE	canonical	3	322	junction_9	32.5261528202145	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTCCTTCAGCTCTT	NA	False	NA	29	True	AGTAAA	-19	NA	107171552	107217020	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207736_107216803
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030782	chr4	+	187	1	Intergenic	novelGene_234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAGAAAGATGGCATTC	NA	False	NA	NA	False	NA	NA	NA	107224457	107224644	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_107224500_107224600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030819	chr4	+	937	3	FSM	ENSMUSG00000048351.15	ENSMUST00000131656.2	3714	3	-16	2793	-16	68	multi-exon	FALSE	canonical	3	432	junction_2	33.5	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGGTGTGTCTTAATTTC	NA	False	NA	57	True	AGTAAA	-40	NA	108185320	108195948	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_108185488_108189407_108189549_108195319
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030867	chr4	-	2592	20	FSM	ENSMUSG00000028559.18	ENSMUST00000160271.8	2604	20	12	0	-2	0	multi-exon	FALSE	canonical	1	25	junction_17	99.0531349615264	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	False	NA	-1	True	CATAAA	-25	NA	108975221	108918846	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030925	chr4	-	2712	19	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	7	20	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGGCCTGGGAACACATT	NA	False	NA	-35	True	NA	NA	NA	115980875	115954151	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980697
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030931	chr4	-	2731	19	FSM	ENSMUSG00000028702.16	ENSMUST00000102705.10	2780	19	10	39	10	20	multi-exon	FALSE	canonical	3	169	junction_18	87.8901706606913	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGGCCTGGGAACACATT	NA	False	NA	-35	True	NA	NA	NA	115980872	115954151	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980675
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030937	chr4	+	194	1	Intergenic	novelGene_235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCCAAGGGCTTGGCCC	NA	False	NA	NA	False	NA	NA	NA	115965210	115965404	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_115965200_115965400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030949	chr4	-	126	1	Genic_Genomic	ENSMUSG00000028693.16	novel	NA	NA	NA	NA	3751	3	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTGTTCTGGAATTATA	5841	False	NA	NA	False	AATAAA	-19	NA	116458371	116458245	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr4_-_116458200_116458400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030952	chr4	-	3149	15	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	391	-560	-53	3	3prime_fragment	TRUE	canonical	3	774	junction_12	215.450595691155	332	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTGTTCTGGAATTATA	NA	False	NA	NA	False	AATAAA	-19	NA	116484747	116458245	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030985	chr4	+	1549	10	FSM	ENSMUSG00000028689.15	ENSMUST00000106464.3	1213	10	-335	-1	-1	0	multi-exon	FALSE	canonical	3	19	junction_2	20.3239201040316	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTCTCTGTAAATCTTG	5642	False	NA	16	True	AATAAA	-20	NA	116565791	116572301	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030991	chr4	-	2056	8	FSM	ENSMUSG00000028688.14	ENSMUST00000030451.10	2090	8	34	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	11.8252583351856	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1973	False	NA	0	True	TTTAAA	-42	NA	116664803	116661198	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000030994	chr4	-	1997	8	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	256	0	intron_retention	FALSE	canonical	2	4	junction_7	42.0500188065672	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	2287	False	NA	0	True	TTTAAA	-42	NA	116664489	116661198	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664409
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031007	chr4	-	1625	1	FSM	ENSMUSG00000043155.5	ENSMUST00000055436.5	1804	1	179	0	179	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGAGCCTCTGTGTCTT	7267	False	NA	-6	True	AATAAA	-26	NA	116678725	116677100	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_116677100_116678700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031035	chr4	-	629	6	NNC	ENSMUSG00000047675.16	novel	860	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	442	junction_4	4893.83536298474	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTAGGTGTTTGGAG	NA	False	NA	-20	True	AATAAA	-23	NA	117013281	117011030	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_-_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012832_117012875_117013254
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031048	chr4	-	1732	10	ISM	ENSMUSG00000028677.20	ENSMUST00000030439.15	3029	15	207887	1	-52	0	3prime_fragment	TRUE	canonical	0	0	junction_5	365.792425790136	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9851	False	NA	NA	False	ATTAAA	-14	NA	117146362	117128660	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031053	chr4	+	1038	7	NNC	ENSMUSG00000033423.17	novel	596	4	NA	NA	-55	2	at_least_one_novel_splicesite	TRUE	canonical	3	91	junction_1	242.081769931842	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTGTCTGGAGCCACC	NA	False	NA	11	True	AATAAA	-18	NA	117407506	117531480	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_117407560_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031057	chr4	+	1391	9	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-54	2	at_least_one_novel_splicesite	FALSE	canonical	3	99	junction_1	225.311693826574	59	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTGTCTGGAGCCACC	NA	False	NA	11	True	AATAAA	-18	NA	117407507	117531480	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_117407560_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031072	chr4	-	1546	11	FSM	ENSMUSG00000009640.12	ENSMUST00000102687.4	1566	11	20	0	0	0	multi-exon	FALSE	canonical	3	80	junction_10	49.3527101586124	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGTTTCCTCACTTCC	NA	False	NA	-35	True	AATAGA	-20	NA	117539450	117531877	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539180_117539410
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031109	chr4	+	1191	7	FSM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	-38	-8	-9	8	multi-exon	FALSE	canonical	3	450	junction_1	88.2754527349226	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTGTCCTATATGCAGA	NA	False	NA	40	True	NA	NA	NA	118266524	118272316	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_118266584_118268081_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031111	chr4	+	1140	7	FSM	ENSMUSG00000006392.17	ENSMUST00000084319.11	1134	7	2	-8	2	8	multi-exon	FALSE	canonical	3	157	junction_2	198.998673920763	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTGTCCTATATGCAGA	NA	False	NA	40	True	NA	NA	NA	118266535	118272316	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_118266584_118268081_118268201_118268894_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031123	chr4	-	1820	10	FSM	ENSMUSG00000006398.16	ENSMUST00000006565.13	1793	10	-17	-10	-17	10	multi-exon	TRUE	canonical	3	1043	junction_4	200.755117703013	544	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTACATGCTTCCCC	NA	False	NA	-1	True	AATAAA	-27	NA	118294566	118290087	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_118290339_118290677_118290796_118291947_118292074_118292669_118292899_118292973_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031130	chr4	+	963	3	FSM	ENSMUSG00000028536.13	ENSMUST00000030261.6	958	3	-8	3	-8	-3	multi-exon	FALSE	canonical	3	18	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGAGTCTTTTTATATTT	8932	False	NA	NA	False	NA	NA	NA	118384431	118387422	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_118384535_118386395_118386509_118386675
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031139	chr4	+	1026	7	ISM	ENSMUSG00000028729.16	ENSMUST00000030501.15	2960	9	422	1791	-5	367	3prime_fragment	FALSE	canonical	3	2261	junction_3	107.131798371082	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTGGGTTAAAACCAGAT	NA	False	NA	23	True	AATAAA	-23	NA	118478417	118483182	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031146	chr4	+	2565	10	FSM	ENSMUSG00000028645.12	ENSMUST00000030398.10	3260	10	42	653	42	0	multi-exon	TRUE	canonical	3	565	junction_3	58.8236535946402	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCAAATGCTTGTG	618	False	NA	36	True	TATAAA	-18	NA	118965949	118994527	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031151	chr4	-	1588	2	FSM	ENSMUSG00000045268.14	ENSMUST00000106355.5	1588	2	-3	3	-3	0	multi-exon	FALSE	canonical	3	13	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTGTGTACTTATTTGG	NA	False	NA	-1	True	AGTAAA	-16	NA	119031395	119026712	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_119028240_119031334
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031166	chr4	-	1305	8	FSM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	327	-4	203	4	multi-exon	FALSE	canonical	3	9851	junction_2	327.608589257214	437	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTGTCATAATTGAGT	NA	False	NA	NA	False	AATAAA	-20	NA	119151474	119135173	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031173	chr4	+	210	1	Intergenic	novelGene_236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATCAAACCAACACAGAG	645	False	NA	NA	False	NA	NA	NA	119137708	119137918	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_119137700_119137900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031182	chr4	-	1306	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106321.9	1288	10	-15	-3	0	3	multi-exon	TRUE	canonical	2	32	junction_8	172.260640876149	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCTTGTCTAGCCTGTCT	9629	False	NA	1	True	NA	NA	NA	119177696	119164353	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_119165081_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031192	chr4	-	770	1	Genic_Genomic	ENSMUSG00000028636.15	novel	NA	NA	NA	NA	3062	3	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGTTTCTGGTTTTTTGTT	8629	False	NA	-1	True	AATAAA	-33	NA	119276493	119275723	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr4_-_119275700_119276500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031195	chr4	+	197	1	Intergenic	novelGene_237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCGCTATCGCCCGTAGA	NA	False	NA	NA	False	NA	NA	NA	119390222	119390419	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_119390200_119390400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031207	chr4	-	1970	10	FSM	ENSMUSG00000032897.18	ENSMUST00000043429.12	1932	10	-35	-3	-34	3	multi-exon	TRUE	canonical	3	393	junction_8	23.5424491839793	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGGGACATTCAT	NA	False	NA	2	True	AATAAA	-23	NA	120682938	120614631	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031242	chr4	+	1881	1	ISM	ENSMUSG00000028654.14	ENSMUST00000106252.9	3293	3	4661	0	1266	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGAGTGGGGGTAGCAT	8132	False	NA	NA	False	AATAAA	-18	NA	122894397	122896278	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_122894400_122896300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031292	chr4	-	92	1	Intergenic	novelGene_238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATTGCCTTAGCTCCGT	NA	False	NA	NA	False	NA	NA	NA	124247057	124246965	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_-_124247000_124247100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031301	chr4	+	1805	17	FSM	ENSMUSG00000028902.5	ENSMUST00000030734.5	1820	17	17	-2	17	2	multi-exon	FALSE	canonical	3	1027	junction_12	104.342509913266	640	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATGAATTTTTTGTTTT	NA	False	NA	53	True	AATAAA	-40	NA	124608585	124626255	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031318	chr4	+	304	1	Genic_Genomic	ENSMUSG00000028889.18	novel	NA	NA	NA	NA	3052	8	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTATTTTTCTTTTGAG	5802	False	NA	51	True	ATTAAA	-26	NA	124748739	124749043	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr4_+_124748700_124749000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031319	chr4	-	1641	10	FSM	ENSMUSG00000028873.17	ENSMUST00000084296.10	1626	10	-3	-12	-3	12	multi-exon	FALSE	canonical	3	1430	junction_6	123.940846105444	1027	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCATTCACTCTGGTTAT	NA	False	NA	2	True	AATAAA	-38	NA	124830713	124812245	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031330	chr4	+	2355	16	FSM	ENSMUSG00000028869.14	ENSMUST00000030684.8	2366	16	19	-8	19	4	multi-exon	FALSE	canonical	3	650	junction_4	51.4673575083168	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTCGCTTTCTTGTGC	NA	False	NA	32	True	ATTAAA	-26	NA	124923803	124949177	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031347	chr4	+	203	1	Intergenic	novelGene_239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTAGCCTCAATCCAGA	4416	False	NA	NA	False	NA	NA	NA	125449772	125449975	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_125449800_125450000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031367	chr4	+	959	3	FSM	ENSMUSG00000050212.5	ENSMUST00000052876.3	1689	3	731	-1	-57	0	multi-exon	FALSE	canonical	3	53	junction_1	143	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTCTCTCACTGGTTAC	7073	False	NA	21	True	AATGAA	-16	NA	126042267	126043668	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_126042425_126042676_126042839_126043028
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031389	chr4	-	264	1	ISM	ENSMUSG00000042558.17	ENSMUST00000151191.8	1710	6	5059	0	5051	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTCCTGTTCCTGTCTC	NA	False	NA	NA	False	AATAAA	-20	NA	126210103	126209839	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_126209800_126210100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031398	chr4	+	699	5	NIC	ENSMUSG00000028837.9	novel	859	6	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	3	136	junction_1	1450.30695026949	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGGGTTTGGCCTTA	5417	False	NA	19	True	AATAAA	-21	NA	126571459	126603507	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr4_+_126571639_126580821_126580893_126599850_126600014_126601346_126601397_126603271
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031413	chr4	+	952	1	ISM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	8521	440	3400	-440	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTTCATGTATTACTTC	NA	False	NA	17	True	ATTAAA	-17	NA	126923637	126924589	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_126923600_126924600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031419	chr4	-	1698	1	ISM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	11866	495	8287	4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAATGAAGTTTTGTTTG	NA	False	NA	NA	False	ATTAAA	-24	NA	126943079	126941381	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_126941400_126943100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031424	chr4	+	214	1	Intergenic	novelGene_240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACAGAAATACTATAAGAAT	NA	False	NA	NA	False	NA	NA	NA	126993285	126993499	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_126993300_126993500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031428	chr4	+	1126	3	FSM	ENSMUSG00000070737.11	ENSMUST00000094712.5	1120	3	-6	0	-6	0	multi-exon	FALSE	canonical	3	98	junction_2	3.5	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	7	True	TTTAAA	-4	NA	127019832	127023437	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_127019987_127021611_127021793_127022646
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031434	chr4	+	1023	2	FSM	ENSMUSG00000042380.9	ENSMUST00000142029.2	1022	2	0	-1	0	1	multi-exon	FALSE	canonical	3	445	junction_1	0	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGAGTCCTGCTCTCTG	NA	False	NA	30	True	ATTAAA	-19	NA	127137576	127141603	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_127137692_127140695
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031438	chr4	+	328	1	Genic_Genomic	ENSMUSG00000042380.9	novel	NA	NA	NA	NA	3699	1	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGAGTCCTGCTCTCTG	NA	False	NA	30	True	ATTAAA	-19	NA	127141275	127141603	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr4_+_127141300_127141600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031464	chr4	-	1445	2	FSM	ENSMUSG00000046623.9	ENSMUST00000060419.2	1445	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTAGTCAGGCGGAGAA	4504	False	NA	-10	True	AATAAA	-17	NA	127247874	127244878	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_127246275_127247825
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031491	chr4	+	890	1	ISM	ENSMUSG00000028792.15	ENSMUST00000102604.11	1781	7	17416	0	17287	0	mono-exon	FALSE	NA	NA	NA	NA	NA	194	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2224	False	NA	29	True	AATAAA	-19	NA	128904432	128905322	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_128904400_128905300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031493	chr4	+	194	2	Intergenic	novelGene_241	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACACCCACCAATTTCAAA	5258	False	NA	NA	False	NA	NA	NA	129040919	129041346	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_129041063_129041295
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031540	chr4	-	2053	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	-11	-4	-11	4	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	833	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTGGTTTAAGTTCTTC	8797	False	NA	-1	True	AATAAA	-26	NA	129436517	129409892	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031544	chr4	-	1624	7	ISM	ENSMUSG00000000409.15	ENSMUST00000167288.8	2074	13	1809	5	-104	0	3prime_fragment	FALSE	canonical	3	108	junction_2	13.2214052035158	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTCTACTGCATACTT	NA	False	NA	0	True	NA	NA	NA	129450356	129442141	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031553	chr4	-	1152	10	ISM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	49	14	0	-14	intron_retention	FALSE	canonical	3	1341	junction_3	45.5241083871441	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCAGGCATTTTG	6426	False	NA	-14	True	AATAAA	-18	NA	129494392	129485766	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031563	chr4	+	1549	5	FSM	ENSMUSG00000028797.21	ENSMUST00000152126.8	1519	5	-23	-7	-3	0	multi-exon	FALSE	canonical	3	284	junction_2	194.785779768442	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3173	False	NA	16	True	AATAAA	-16	NA	129494469	129502321	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031586	chr4	-	503	1	ISM	ENSMUSG00000028790.14	ENSMUST00000066257.6	3738	9	26943	1032	-1533	-1032	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATGAATTGTCATTTTT	9947	False	NA	NA	False	AATAAA	-28	NA	129609146	129608643	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_129608600_129609100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031593	chr4	+	197	1	Intergenic	novelGene_242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGGTCATGGTG	6448	False	NA	NA	False	NA	NA	NA	129779003	129779200	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_129779000_129779200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031606	chr4	+	841	5	NNC	ENSMUSG00000028773.9	novel	823	4	NA	NA	143	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	2159.9895109699	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTTGGTCCTC	NA	False	NA	31	True	AATAAA	-20	NA	130202530	130209256	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_130202644_130203234_130203396_130206083_130206257_130207746_130207849_130208964
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031624	chr4	+	217	1	Intergenic	novelGene_243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATAGCTCTTTACGTTTT	NA	False	NA	NA	False	NA	NA	NA	130259268	130259485	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_130259300_130259500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031630	chr4	+	1030	1	ISM	ENSMUSG00000028580.16	ENSMUST00000030315.13	5389	22	117214	0	117129	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	24	True	AATACA	-18	NA	130507845	130508875	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_130507800_130508900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031661	chr4	+	615	5	FSM	ENSMUSG00000086290.10	ENSMUST00000153474.9	606	5	-3	-6	-1	6	multi-exon	FALSE	canonical	3	139	junction_1	27.427176303805	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATTTATTTATTTATT	NA	False	NA	33	True	AATAAA	-22	NA	132035985	132038341	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761_132037816_132038144
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031663	chr4	+	1172	3	FSM	ENSMUSG00000086290.10	ENSMUST00000126380.4	1213	3	41	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	32	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035986	132038335	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_132036219_132037148_132037215_132037461
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031664	chr4	+	845	4	FSM	ENSMUSG00000086290.10	ENSMUST00000232260.2	896	4	53	-2	0	2	multi-exon	FALSE	canonical	3	139	junction_1	29.9369708257569	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTTTATTTATTTATT	NA	False	NA	29	True	AATAAA	-18	NA	132035986	132038337	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_132036219_132037148_132037215_132037461_132037816_132038144
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031682	chr4	-	566	1	Genic_Genomic	ENSMUSG00000028896.14	novel	NA	NA	NA	NA	7449	1	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTTATGCGTGTCCA	NA	False	NA	-9	True	AATAAA	-22	NA	132059794	132059228	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr4_-_132059200_132059800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031693	chr4	-	823	2	ISM	ENSMUSG00000028896.14	ENSMUST00000155129.2	507	6	-38	14100	-38	-12432	5prime_fragment	FALSE	canonical	3	1001	junction_1	0	342	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATGTGTGTGTGTGAGC	NA	False	NA	1	True	ATTAAA	-25	NA	132080954	132079233	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_132080010_132080907
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031716	chr4	-	2048	2	FSM	ENSMUSG00000054428.13	ENSMUST00000145795.2	1014	2	-31	-1003	-31	-930	multi-exon	FALSE	canonical	3	7869	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGCTGATCACG	9274	False	NA	NA	False	NA	NA	NA	132260937	132258795	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_132260699_132260792
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031734	chr4	+	192	1	Intergenic	novelGene_244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTCTATGATTTAAAA	2392	False	NA	NA	False	NA	NA	NA	132354164	132354356	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_132354200_132354400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031774	chr4	+	931	6	FSM	ENSMUSG00000028865.15	ENSMUST00000105910.2	986	6	55	0	55	0	multi-exon	FALSE	canonical	3	29	junction_1	9.2736184954957	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGACCTATGTCTTGGG	NA	False	NA	20	True	AATAAA	-22	NA	132948175	132951866	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_132948379_132948753_132948916_132949015_132949088_132949479_132949525_132950913_132951059_132951562
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031856	chr4	-	1542	1	ISM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	55713	0	1243	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGTTTCCTAGTGCCTC	6616	False	NA	NA	False	AATAAA	-15	NA	133858710	133857168	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_133857200_133858700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031880	chr4	+	1699	2	FSM	ENSMUSG00000028832.12	ENSMUST00000130253.2	612	2	0	-1087	0	1087	multi-exon	FALSE	canonical	3	455	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAATGAAAAGTTTAACAAA	NA	False	NA	NA	False	NA	NA	NA	134195709	134199081	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_134195741_134197413
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031890	chr4	-	179	1	ISM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	9535	5	9311	2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTCTTGGTTCATCTC	1058	False	NA	2	True	ATTAAA	-25	NA	134253044	134252865	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_134252900_134253000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031897	chr4	-	1464	7	FSM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	6	555	-4	-541	multi-exon	FALSE	canonical	3	105	junction_6	159.506530691797	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAGTCTCCATAATTG	NA	False	NA	-2	True	AATGAA	-18	NA	134262573	134253415	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262392
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031909	chr4	-	1071	6	NIC	ENSMUSG00000028822.12	novel	1204	7	NA	NA	19	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_5	246.504685553845	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTCTCGTTATACCTT	NA	False	NA	-20	True	ATTAAA	-19	NA	134642307	134625159	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134642199
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031927	chr4	-	1236	1	ISM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	57610	0	57610	0	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	0	True	AATAAA	-19	NA	134942515	134941279	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_134941300_134942500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031944	chr4	-	200	1	ISM	ENSMUSG00000028803.19	ENSMUST00000102549.10	5153	12	42913	2619	3353	375	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGCAGCTTTCTTCCTG	NA	False	NA	-1	True	NA	NA	NA	135179021	135178821	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_135178800_135179000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000031973	chr4	+	856	1	ISM	ENSMUSG00000028676.18	ENSMUST00000126641.2	3754	6	13306	0	5758	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGTTTTTCTGTAGACT	NA	False	NA	23	True	AATAAA	-28	NA	135596363	135597219	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_135596400_135597200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032017	chr4	-	730	6	NIC	ENSMUSG00000059291.16	novel	622	5	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	4990.53135447519	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTGTGTGTTTGT	NA	False	NA	-4	True	AATAAA	-40	NA	135780439	135777257	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780280
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032036	chr4	+	208	1	Intergenic	novelGene_245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACGGGCTGGTGAGATGG	9674	False	NA	NA	False	NA	NA	NA	136007103	136007311	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_136007100_136007300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032042	chr4	-	1434	1	ISM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	36591	0	36570	0	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGAAGGTTATTTTCCTC	352	False	NA	-1	True	ATTAAA	-24	NA	137048440	137047006	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_137047000_137048400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032051	chr4	+	190	1	Intergenic	novelGene_246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCCGGGCGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	137090670	137090860	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_137090700_137090900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032068	chr4	-	2930	11	NIC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	65	-9	intron_retention	FALSE	canonical	3	1320	junction_10	107.525624852869	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGCCAGAGCTGAGTC	NA	False	NA	-11	True	AATAAA	-15	NA	137523630	137469052	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr4_-_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032115	chr4	+	1305	7	FSM	ENSMUSG00000028743.8	ENSMUST00000073787.7	1288	7	-10	-7	-10	7	multi-exon	FALSE	canonical	3	253	junction_5	35.9787746070127	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTGCTGCCCAACACCT	NA	False	NA	36	True	NA	NA	NA	139038044	139045744	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_139038388_139041414_139041603_139041777_139041883_139044020_139044118_139044244_139044345_139044880_139045011_139045402
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032140	chr4	+	1329	1	ISM	ENSMUSG00000040945.14	ENSMUST00000071169.9	3999	15	21351	0	7514	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGGCTTTCATGATTCCT	NA	False	NA	28	True	AATAAA	-21	NA	140449202	140450531	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_140449200_140450500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032145	chr4	-	2561	16	FSM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	-60	-185	-60	185	multi-exon	TRUE	canonical	3	76	junction_4	15.9114214743163	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCACGGCTGGCAAGAT	NA	False	NA	NA	False	AATAAA	-17	NA	140501607	140472990	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659_140477763_140477891_140478037_140479841_140479997_140483683_140483792_140484812_140484925_140485132_140485237_140485332_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621_140496803_140501399
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032183	chr4	+	1723	6	ISM	ENSMUSG00000006445.4	ENSMUST00000006614.3	3913	17	20844	0	5171	0	3prime_fragment	FALSE	canonical	3	136	junction_1	9.48683298050514	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCTTTCATTCCTGGA	NA	False	NA	8	True	AATAAA	-22	NA	141049394	141056695	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032195	chr4	+	2696	16	FSM	ENSMUSG00000006215.13	ENSMUST00000006377.13	2722	16	30	-4	0	4	multi-exon	TRUE	canonical	3	129	junction_3	19.5436832648187	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGTCCCTGTGTCAC	NA	False	NA	9	True	AATAAA	-19	NA	141171994	141194540	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032202	chr4	-	3062	9	NIC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_8	503.602134005606	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141325527	141303372	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325424
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032227	chr4	-	1822	3	NNC	ENSMUSG00000040616.4	novel	1875	3	NA	NA	-370	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	75.5	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	9830	False	NA	-6	True	AATAAA	-18	NA	141811985	141758302	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_-_141759406_141764715_141765245_141811795
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032251	chr4	+	190	1	Intergenic	novelGene_247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTGTGTCTGGTCGGT	NA	False	NA	6	True	NA	NA	NA	144130317	144130507	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_144130300_144130500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032263	chr4	+	2413	3	Fusion	ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	375	3	NA	NA	-14303	777	multi-exon	FALSE	canonical	3	28	junction_1	34.5	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145159006	145178235	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr4_+_145159152_145160315_145160385_145176036
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032265	chr4	+	2344	2	Fusion	ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	375	3	NA	NA	-14303	777	multi-exon	FALSE	canonical	3	59	junction_1	0	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145159006	145178235	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr4_+_145159152_145176036
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032275	chr4	+	2516	6	Fusion	ENSMUSG00000078502.11_ENSMUSG00000078503.10	novel	1221	3	NA	NA	-13	0	multi-exon	TRUE	canonical	0	0	junction_4	20.6533290294809	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	5006	False	NA	NA	False	NA	NA	NA	145241440	145351915	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr4_+_145241589_145343687_145343746_145347127_145347255_145348721_145349286_145349370_145350039_145350964
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032278	chr4	+	370	4	NNC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	-12	54911	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	19.7540431867054	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTGTTGGTTTTTG	5007	False	NA	NA	False	NA	NA	NA	145241441	145320669	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_145241589_145314001_145314095_145319501_145319572_145320609
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032283	chr4	+	942	2	Fusion	ENSMUSG00000078503.10_ENSMUSG00000082352.2	novel	3044	5	NA	NA	16	94	multi-exon	FALSE	canonical	1	4	junction_1	0	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTAAGATTTGTTTTT	5035	False	NA	20	True	AAGAAA	-16	NA	145241469	145301825	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr4_+_145241589_145301002
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032303	chr4	+	678	6	Fusion	ENSMUSG00000078502.11_ENSMUSG00000084350.2	novel	2413	3	NA	NA	13	-2021	multi-exon	FALSE	canonical	2	3	junction_4	97.8885080078351	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145311785	145554491	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr4_+_145311905_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032304	chr4	+	760	7	Fusion	ENSMUSG00000078502.11_ENSMUSG00000084350.2	novel	2413	3	NA	NA	13	-2021	multi-exon	TRUE	canonical	2	3	junction_5	74.9525776000325	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145311785	145554491	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr4_+_145311905_145510590_145510684_145516045_145516128_145541336_145541383_145551778_145551837_145552678_145552806_145554256
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032306	chr4	+	714	6	Fusion	ENSMUSG00000078502.11_ENSMUSG00000084350.2	novel	2413	3	NA	NA	13	-2021	multi-exon	FALSE	canonical	2	3	junction_4	86.7156271960251	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145311785	145554491	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr4_+_145311905_145510590_145510684_145516045_145516128_145551778_145551837_145552678_145552806_145554256
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032316	chr4	-	445	2	Genic_Genomic	ENSMUSG00000084279.2	novel	632	1	NA	NA	-14887	372	multi-exon	TRUE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACATCATGAAGTTTGTAA	NA	False	NA	NA	False	TTTAAA	-31	NA	145471669	145455778	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr4_-_145456204_145471649
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032335	chr4	+	319	3	Intergenic	novelGene_248	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	66	junction_2	181.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTGCTGTTCACATTTC	NA	False	NA	NA	False	NA	NA	NA	145508064	145516129	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_145508210_145510590_145510684_145516048
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032339	chr4	+	493	3	Intergenic	novelGene_249	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	237	junction_1	3.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTGCTGTTCACATTTC	NA	False	NA	NA	False	NA	NA	NA	145508064	145516129	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_145508381_145510590_145510684_145516045
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032374	chr4	+	321	3	FSM	ENSMUSG00000085525.8	ENSMUST00000124975.2	282	3	-37	-2	4	2	multi-exon	FALSE	canonical	3	67	junction_2	186	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTGCTGTTCACATTTC	NA	False	NA	35	True	NA	NA	NA	146206904	146215006	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_146207052_146209452_146209546_146214925
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032376	chr4	+	658	5	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	6	38389	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	177.47957628978	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206906	146253393	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_146207052_146209452_146209546_146250678_146250737_146251579_146251707_146253158
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032394	chr4	+	2091	4	Intergenic	novelGene_250	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	86	junction_2	238.174072663019	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	2291	False	NA	NA	False	NA	NA	NA	146289349	146319730	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_146289526_146291416_146291510_146312913_146312972_146317966
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032410	chr4	+	3182	4	Intergenic	novelGene_251	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	40	junction_1	34.5864456430872	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146370014	146393561	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_146370163_146384326_146384431_146388486_146388614_146390758
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032416	chr4	+	685	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-163443	-4077	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	299.280871423484	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146370036	146550672	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_146370163_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032451	chr4	+	965	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33256	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	259.684049482358	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500223	146550672	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_146500544_146502756_146502850_146508052_146508139_146533486_146533533_146547961_146548020_146548860_146548988_146550437
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032510	chr4	+	707	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16642	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	304.163114134505	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1852	False	NA	NA	False	AATACA	-2	NA	146516837	146550672	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_146516986_146518646_146518740_146533486_146533533_146547961_146548020_146548860_146548988_146550437
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032517	chr4	+	662	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4074	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	302.101572322952	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGTAAACAGTTTAACTT	1855	False	NA	NA	False	AATACA	-5	NA	146516840	146550675	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_146516986_146533486_146533533_146541117_146541166_146547961_146548020_146548860_146548988_146550437
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032531	chr4	+	836	4	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-12	3413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	190.482428469283	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586471	146627265	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_146586602_146616526_146616611_146619877_146620005_146626770
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032532	chr4	+	916	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-12	3413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	172.99620660581	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586471	146627265	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_146586602_146603534_146603615_146616526_146616611_146619877_146620005_146626770
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032533	chr4	+	833	4	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-12	3413	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	189.429553015245	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586471	146627265	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_146586602_146616529_146616611_146619877_146620005_146626770
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032556	chr4	+	2321	2	Intergenic	novelGene_252	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	146803605	146806011	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_146803953_146804037
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032561	chr4	+	2406	1	Intergenic	novelGene_253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	146803605	146806011	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_146803600_146806000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032564	chr4	-	2760	6	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	14	63800	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	18.9567929777165	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994033	146912352	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_-_146913241_146913493_146914904_146917069_146917197_146921032_146921137_146983728_146983809_146993882
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032572	chr4	+	681	5	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	-46108	-3274	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	283.285191988568	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	147060198	147141977	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_147060315_147107818_147107913_147136965_147137048_147140055_147140183_147141715
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032590	chr4	+	562	4	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-181875	-844	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	137.652541648246	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGCAGTGAATGTGACA	NA	False	NA	13	True	NA	NA	NA	147394998	147597033	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_147395147_147592042_147592098_147595209_147595337_147596801
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032595	chr4	+	924	5	NNC	ENSMUSG00000078497.10	novel	572	5	NA	NA	-50732	5664	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_4	233.417008806128	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGTATAATGGTATTCT	NA	False	NA	12	True	NA	NA	NA	147395027	147481125	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_147395147_147447267_147447362_147469673_147469759_147472778_147472906_147480626
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032603	chr4	+	2062	1	Intergenic	novelGene_254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	147475557	147477619	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_147475600_147477600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032605	chr4	+	555	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	-844	at_least_one_novel_splicesite	FALSE	canonical	3	110	junction_1	92.8906166771793	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGCAGTGAATGTGACA	NA	False	NA	13	True	NA	NA	NA	147576867	147597033	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032651	chr4	-	1438	1	ISM	ENSMUSG00000029020.14	ENSMUST00000105716.9	4241	19	29651	0	12487	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTCTCTGCCTGCAG	NA	False	NA	-4	True	AATAAA	-19	NA	147959493	147958055	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_147958100_147959500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032674	chr4	+	1242	8	FSM	ENSMUSG00000029003.12	ENSMUST00000030860.9	1535	8	293	0	-249	0	multi-exon	FALSE	canonical	3	623	junction_4	29.3730405338651	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148224931	148230156	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229828
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032685	chr4	-	1113	6	FSM	ENSMUSG00000055401.15	ENSMUST00000056965.12	1163	6	51	-1	51	0	multi-exon	FALSE	canonical	3	138	junction_5	262.901958912443	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTTGAGGGCTTACA	NA	False	NA	-17	True	AATAAA	-17	NA	148236465	148230243	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236398
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032690	chr4	-	1093	6	NNC	ENSMUSG00000055401.15	novel	1346	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_5	294.890895078163	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTTGAGGGCTTACA	NA	False	NA	-17	True	AATAAA	-17	NA	148236598	148230243	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236551
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032708	chr4	+	1049	5	FSM	ENSMUSG00000028991.16	ENSMUST00000057580.8	1003	5	-46	0	-32	0	multi-exon	FALSE	canonical	3	142	junction_1	19.0656759649376	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAGGCCTCTGACTATGG	NA	False	NA	16	True	AATAAA	-22	NA	148533035	148539430	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_148533145_148536713_148536890_148537478_148537588_148538214_148538448_148539008
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032726	chr4	-	2176	7	NIC	ENSMUSG00000041459.16	novel	1304	8	NA	NA	0	3	intron_retention	FALSE	canonical	3	409	junction_1	257.510949066033	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATTCATCACCTGTCATG	NA	False	NA	1	True	AATAAA	-29	NA	148711227	148701169	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr4_-_148701302_148702022_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032751	chr4	-	1908	7	NIC	ENSMUSG00000041459.16	novel	6495	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	28	junction_1	398.788756388921	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711227	148701319	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr4_-_148702283_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032783	chr4	-	367	1	ISM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	16348	2	9640	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTTCTTTGTTTCTTCT	NA	False	NA	-10	True	AATAAA	-14	NA	149234816	149234449	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_-_149234400_149234800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032793	chr4	+	609	1	FSM	ENSMUSG00000070572.8	ENSMUST00000117987.2	378	1	-42	-189	-42	189	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGTAGCTACTTCCTAA	1872	False	NA	NA	False	ATTAAA	-35	NA	149541743	149542352	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_149541700_149542400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032806	chr4	+	1847	7	FSM	ENSMUSG00000028990.14	ENSMUST00000030842.8	1817	7	-30	0	24	0	multi-exon	FALSE	canonical	3	163	junction_3	14.9517743280039	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569720	149581125	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032826	chr4	+	194	1	Intergenic	novelGene_255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGCAAATTAGGGGTGTG	5033	False	NA	NA	False	NA	NA	NA	150578548	150578742	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_150578500_150578700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032828	chr4	+	3045	4	FSM	ENSMUSG00000028967.11	ENSMUST00000030811.2	3043	4	0	-2	0	2	multi-exon	FALSE	canonical	3	303	junction_2	19.3275853524323	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTGTCTTGTCTAAACT	3781	False	NA	NA	False	AATAAA	-30	NA	150939529	150953346	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_150939729_150949531_150949727_150949820_150949898_150950772
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032848	chr4	-	862	7	NNC	ENSMUSG00000028964.15	novel	908	7	NA	NA	21	0	intron_retention	FALSE	canonical	3	153	junction_6	2090.71572673092	78	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	False	NA	-1	True	AATAAA	-26	NA	150994362	150981589	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994264
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032861	chr4	-	2135	5	FSM	ENSMUSG00000028955.4	ENSMUST00000030797.4	2120	5	-19	4	-9	-4	multi-exon	FALSE	canonical	3	150	junction_4	30.2685893295343	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGTCGTGTTTCTTGG	NA	False	NA	-1	True	AATAAA	-18	NA	151142429	151131760	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142330
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032865	chr4	-	609	4	FSM	ENSMUSG00000014592.22	ENSMUST00000185034.8	2198	4	-42	1631	0	25	multi-exon	FALSE	canonical	3	969	junction_2	33.2565782966318	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAATGAGTACATTTCCC	NA	False	NA	2	True	AATAAA	-35	NA	151946203	151876661	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_151876960_151914874_151914994_151920270_151920341_151946081
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032896	chr4	+	1416	9	FSM	ENSMUSG00000028937.15	ENSMUST00000075363.10	1457	9	45	-4	45	1	multi-exon	FALSE	canonical	3	360	junction_1	55.2466062306093	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTAGGTGGTCATTTGTCT	NA	False	NA	21	True	AATAAA	-26	NA	152262635	152356313	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_152262798_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032904	chr4	+	2245	4	FSM	ENSMUSG00000028936.16	ENSMUST00000139685.8	2051	4	-183	-11	-58	11	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	9395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTTTTTTCTTCTCA	NA	False	NA	40	True	ATTAAA	-30	NA	152410140	152418539	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032915	chr4	+	620	5	NIC	ENSMUSG00000028936.16	novel	474	4	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	2499.4547780466	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGTGGTTTATCCTTGCAT	NA	False	NA	16	True	AATAAA	-15	NA	152410317	152416937	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr4_+_152410353_152411937_152412043_152413716_152413871_152414460_152414586_152416736
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032924	chr4	+	470	4	NNC	ENSMUSG00000028936.16	novel	474	4	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2687.85035959139	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGTGGTTTATCCTTGCAT	NA	False	NA	16	True	AATAAA	-15	NA	152410317	152416937	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr4_+_152410357_152411937_152412043_152414460_152414586_152416736
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032931	chr4	+	1455	1	Genic_Genomic	ENSMUSG00000028936.16	novel	NA	NA	NA	NA	5071	11	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTTTTTTCTTCTCA	NA	False	NA	40	True	ATTAAA	-30	NA	152417084	152418539	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr4_+_152417100_152418500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032934	chr4	-	519	2	Intergenic	novelGene_256	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTTTGTTTTAAAGCT	NA	False	NA	NA	False	AATAAA	-23	NA	152668186	152665274	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_-_152665662_152668054
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032960	chr4	-	1440	4	FSM	ENSMUSG00000029030.15	ENSMUST00000030896.15	1724	4	284	0	-216	0	multi-exon	FALSE	canonical	3	665	junction_1	33.0891052899423	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTGCTCCTTTTTGAA	NA	False	NA	-3	True	AGTAAA	-16	NA	154244839	154241941	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_154243023_154243725_154243880_154244541_154244719_154244811
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000032974	chr4	+	425	1	ISM	ENSMUSG00000029047.14	ENSMUST00000103180.4	1688	6	4915	78	4872	-78	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAAATGAAGGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	155156387	155156812	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_155156400_155156800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033000	chr4	-	2332	18	FSM	ENSMUSG00000029053.17	ENSMUST00000030922.15	2641	18	-39	348	-39	31	multi-exon	FALSE	canonical	3	142	junction_14	28.8196876191202	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTCTGATGCCTTTTT	NA	False	NA	-5	True	AATAAA	-20	NA	155445857	155346525	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640_155352721_155353489_155353610_155355655_155355744_155355925_155356062_155357397_155357485_155371236_155371335_155374087_155374277_155374959_155375013_155377614_155377697_155378723_155378856_155385386_155385473_155439110_155439162_155440883_155440974_155441937_155442060_155445608
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033023	chr4	+	1111	5	FSM	ENSMUSG00000029038.10	ENSMUST00000030905.9	1472	5	272	89	-52	-89	multi-exon	FALSE	canonical	3	1510	junction_4	100.903419169025	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTGTTGTTGGCCCTTT	NA	False	NA	28	True	AATAAA	-28	NA	155789528	155818247	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383_155816503_155817929
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033047	chr4	+	929	4	FSM	ENSMUSG00000065990.13	ENSMUST00000084097.12	1159	4	184	46	-84	23	multi-exon	FALSE	canonical	3	1785	junction_1	303.738191357111	1100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTGGCTTGGTGTGAGAT	NA	False	NA	50	True	AATAAA	-40	NA	155915991	155917541	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_155916193_155916439_155916528_155916808_155917255_155917347
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033053	chr4	+	847	4	FSM	ENSMUSG00000065990.13	ENSMUST00000105591.2	773	4	-24	-50	-14	20	multi-exon	FALSE	canonical	3	281	junction_1	1010.64072086309	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTGGCTTGGTGTGA	NA	False	NA	47	True	AATAAA	-37	NA	155916101	155917538	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_155916224_155916439_155916528_155916808_155917255_155917347
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033066	chr4	+	367	1	Genic_Genomic	ENSMUSG00000029070.10	novel	NA	NA	NA	NA	805	6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGGACCTGCTGCTCTC	NA	False	NA	18	True	AATAAA	-19	NA	155928184	155928551	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr4_+_155928200_155928600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033070	chr4	+	2366	17	FSM	ENSMUSG00000029034.10	ENSMUST00000030901.9	2368	17	3	-1	3	1	multi-exon	FALSE	canonical	3	774	junction_2	75.0722308430354	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCACTGTGTACCGTCAT	9963	False	NA	22	True	AATAAA	-22	NA	155954005	155973561	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033084	chr4	-	1297	7	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	7	-2	intron_retention	FALSE	canonical	3	268	junction_3	43.8735556900611	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGGTCTGTTTATTA	9142	False	NA	NA	False	AATAAA	-12	NA	155976176	155973320	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr4_-_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975873_155976087
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033100	chr4	+	206	1	Intergenic	novelGene_257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGGAACGGATTTAAAA	4730	False	NA	NA	False	NA	NA	NA	156190913	156191119	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr4_+_156190900_156191100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033118	chr4	+	598	3	ISM	ENSMUSG00000095567.9	ENSMUST00000179543.8	2785	19	9851	193	4140	-180	3prime_fragment	FALSE	canonical	3	2038	junction_1	7	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTTGTTTGTTTTTT	NA	False	NA	25	True	GATAAA	-20	NA	156330317	156331880	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr4_+_156330424_156331133_156331221_156331475
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033141	chr5	+	694	1	ISM	ENSMUSG00000058503.12	ENSMUST00000197082.5	1943	10	25712	0	2709	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTCTTTGTGTATC	NA	False	NA	19	True	AGTAAA	-15	NA	3619544	3620238	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_3619500_3620200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033145	chr5	-	322	1	ISM	ENSMUSG00000040302.18	ENSMUST00000042753.14	2368	5	12284	2	7841	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTGTGCTATCTGCGTG	7150	False	NA	-11	True	AATAAA	-19	NA	3634301	3633979	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_3634000_3634300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033156	chr5	+	2976	17	NIC	ENSMUSG00000000600.16	novel	2930	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	59.7316590574044	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTATTTAAACCATTTC	7985	False	NA	10	True	AATAAA	-23	NA	3853183	3891359	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033159	chr5	+	300	1	FSM	ENSMUSG00000104699.2	ENSMUST00000199852.2	793	1	595	-102	595	102	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATACAGGCTAACAGAATGA	NA	False	NA	NA	False	ATTAAA	-32	NA	3925956	3926256	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_3926000_3926300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033171	chr5	-	1578	2	NNC	ENSMUSG00000001467.6	novel	3931	10	NA	NA	20493	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACAGATTTTCTTTGCCA	NA	False	NA	-24	True	ATTAAA	-20	NA	4132888	4131146	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_-_4131193_4131356
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033201	chr5	-	1151	1	ISM	ENSMUSG00000002297.17	ENSMUST00000002368.16	2401	12	24519	38	2144	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCTGAGAATAAAAATGAA	NA	False	NA	NA	False	AATAAA	-22	NA	8448161	8447010	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_8447000_8448200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033209	chr5	+	466	1	ISM	ENSMUSG00000040584.9	ENSMUST00000047753.5	4997	28	87976	57	14765	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCCATAATTGTAAATAAG	NA	False	NA	NA	False	AATAAA	-21	NA	8798052	8798518	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_8798100_8798500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033215	chr5	+	1753	6	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	50989	0	-158	0	3prime_fragment	FALSE	canonical	3	175	junction_1	34.1912269449343	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5226	False	NA	10	True	ATTAAA	-17	NA	8899174	8916315	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033223	chr5	-	695	1	ISM	ENSMUSG00000042508.17	ENSMUST00000071921.13	3806	18	42214	67	1169	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTGAGCCATGCAATTA	NA	False	NA	-1	True	AATAAA	-24	NA	9169562	9168867	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_9168900_9169600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033248	chr5	-	2094	17	FSM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	42	-3	7	3	multi-exon	FALSE	canonical	3	849	junction_11	91.8299209136107	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAGTCATCATTTAAAAG	NA	False	NA	6	True	AATAAA	-33	NA	21990207	21962261	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033270	chr5	-	635	1	FSM	ENSMUSG00000081855.5	ENSMUST00000121001.2	555	1	-52	-28	-52	28	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAGGTCAAAACAAAACA	NA	False	NA	NA	False	AATAAA	-28	NA	22818232	22817597	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_22817600_22818200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033303	chr5	-	104	1	ISM	ENSMUSG00000028959.15	ENSMUST00000132109.8	828	5	1073	0	382	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	-4	True	NA	NA	NA	24646140	24646036	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_24646000_24646100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033309	chr5	-	1263	3	FSM	ENSMUSG00000028958.16	ENSMUST00000030799.15	1333	3	65	5	2	3	multi-exon	FALSE	canonical	3	68	junction_2	11	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGTGTGTCTGTGTGTTG	NA	False	NA	-1	True	ATTAAA	-21	NA	24652787	24650460	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_24651272_24651531_24651951_24652754
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033332	chr5	-	1258	8	FSM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	109	417	-87	-417	multi-exon	FALSE	canonical	3	1533	junction_1	69.8271919433531	516	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTTGGTGTGGTTTTTA	NA	False	NA	0	True	AATAAA	-26	NA	25047513	25008237	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033372	chr5	+	2617	10	FSM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	284	17	-17	-17	multi-exon	FALSE	canonical	3	618	junction_9	548.115559591832	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTTTATACATTTATT	4578	False	NA	16	True	AATAAA	-27	NA	29940969	29991459	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033378	chr5	+	1427	9	ISM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	297	4774	-4	-3	5prime_fragment	FALSE	canonical	3	694	junction_8	427.836252992894	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGATGTGTATGGAGTAT	4591	False	NA	NA	False	ATTAAA	-16	NA	29940982	29986702	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033386	chr5	+	210	1	ISM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	50564	17	21062	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTTTATACATTTATT	NA	False	NA	16	True	AATAAA	-27	NA	29991249	29991459	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_29991200_29991500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033436	chr5	+	1344	7	FSM	ENSMUSG00000029162.16	ENSMUST00000201571.4	1087	7	-55	-202	-55	0	multi-exon	FALSE	canonical	3	16	junction_1	5.24933858267454	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTGTCTGTCTGTCTG	1087	False	NA	9	True	AATAAA	-18	NA	31078878	31088592	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_31079352_31082082_31082200_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033450	chr5	-	2316	8	NIC	ENSMUSG00000045302.14	novel	6300	9	NA	NA	0	1	intron_retention	TRUE	canonical	3	234	junction_6	22.518926280272	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGCAGTCCTCTTGTCA	NA	False	NA	-7	True	AATAAA	-22	NA	31117624	31112385	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116757_31117314
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033466	chr5	+	84	1	ISM	ENSMUSG00000013629.17	ENSMUST00000013773.12	7137	44	23616	0	2583	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTCGTCATGAGTACT	NA	False	NA	18	True	AATAAA	-14	NA	31235739	31235823	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_31235700_31235800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033467	chr5	-	1984	8	FSM	ENSMUSG00000029151.15	ENSMUST00000031037.14	2089	8	105	0	-41	0	multi-exon	FALSE	canonical	3	15	junction_5	6.02037357305871	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCAGTCCAATTCCTC	3849	False	NA	0	True	AATAAA	-19	NA	31250854	31243449	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246151_31246662_31246817_31246897_31247045_31247399_31247582_31250606
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033489	chr5	-	1991	12	FSM	ENSMUSG00000029145.13	ENSMUST00000114603.8	1966	12	-24	-1	-24	0	multi-exon	FALSE	canonical	3	556	junction_3	55.8517814183514	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATGACTCTGCTGCCT	NA	False	NA	-9	True	AATAAA	-15	NA	31350382	31344910	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033507	chr5	+	2186	18	FSM	ENSMUSG00000029148.16	ENSMUST00000031034.12	2203	18	17	0	4	0	multi-exon	FALSE	canonical	3	461	junction_13	30.9676692663879	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTGCTTGCGGC	NA	False	NA	33	True	AATAAA	-21	NA	31398224	31408910	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_31398347_31401106_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033552	chr5	-	1030	8	FSM	ENSMUSG00000029136.10	ENSMUST00000031018.10	1042	8	12	0	12	0	multi-exon	FALSE	canonical	3	28	junction_1	7.57816411992848	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGTGTGGCTACTCATC	NA	False	NA	-31	True	AATAAA	-23	NA	31854959	31781782	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_31782001_31805064_31805254_31809152_31809245_31817250_31817416_31823062_31823126_31824204_31824269_31830656_31830790_31854853
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033568	chr5	+	541	1	ISM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	33373	2767	6246	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTGAGTGATTATTCTGT	NA	False	NA	23	True	AGTAAA	-20	NA	32649559	32650100	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_32649600_32650100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033620	chr5	-	1484	9	ISM	ENSMUSG00000005299.7	ENSMUST00000005431.6	5272	14	21897	2644	-7358	217	3prime_fragment	FALSE	canonical	3	324	junction_8	49.848363814673	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATTTTTAATTTTCATCA	NA	False	NA	NA	False	AATAAA	-21	NA	33918264	33899660	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_33899957_33900985_33901125_33902359_33902548_33903583_33903719_33904719_33904855_33905504_33905646_33906085_33906218_33909835_33909956_33918066
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033643	chr5	-	202	2	Antisense	novelGene_ENSMUSG00000037210.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAATGGTTTGGGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	34581875	34546314	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Antisense_chr5_-_34546462_34581820
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033659	chr5	-	1471	11	ISM	ENSMUSG00000001082.13	ENSMUST00000001109.11	1907	13	663	3	-4	1	3prime_fragment	FALSE	canonical	3	347	junction_7	33.037705731482	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTCCGTCTTACTATTC	NA	False	NA	-3	True	AATAAA	-21	NA	34793870	34790988	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033666	chr5	-	1695	13	NIC	ENSMUSG00000001082.13	novel	1754	13	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_12	101.567164422804	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTCCGTCTTACTATT	NA	False	NA	-4	True	AATAAA	-20	NA	34794494	34790989	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794131_34794442
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033689	chr5	+	241	1	Intergenic	novelGene_258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCCCTAGCTAAGGATGTA	NA	False	NA	NA	False	NA	NA	NA	36028365	36028606	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_36028400_36028600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033700	chr5	-	1612	2	FSM	ENSMUSG00000055302.6	ENSMUST00000068795.4	1648	2	-6	42	-6	-42	multi-exon	FALSE	canonical	3	1678	junction_1	0	817	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCGGAGAGTTACTAAGAA	NA	False	NA	-1	True	AATAAA	-26	NA	36954122	36952252	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_36953289_36953546
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033705	chr5	+	365	1	ISM	ENSMUSG00000029120.11	ENSMUST00000031003.11	4088	9	86201	0	15284	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGGCTCGCAAGGCTGC	NA	False	NA	9	True	AATAAA	-21	NA	37112057	37112422	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_37112100_37112400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033714	chr5	+	2048	11	ISM	ENSMUSG00000063646.19	ENSMUST00000121010.9	2496	20	5710	22702	0	0	internal_fragment	FALSE	canonical	3	147	junction_1	11.74265728019	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	2480	False	NA	17	True	AATAAA	-20	NA	37248423	37282643	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033742	chr5	-	1563	1	ISM	ENSMUSG00000046572.11	ENSMUST00000179555.8	6816	3	14780	0	14704	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCTCATTTCGGA	NA	False	NA	-3	True	AATAAA	-18	NA	38827389	38825826	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_38825800_38827400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033765	chr5	+	792	1	FSM	ENSMUSG00000033036.10	ENSMUST00000122204.3	774	1	5	-23	2	23	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTAGGCTCCAATGCCAG	NA	False	NA	NA	False	NA	NA	NA	44070490	44071282	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_44070500_44071300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033770	chr5	-	3710	27	FSM	ENSMUSG00000029086.16	ENSMUST00000087441.11	3664	27	-46	0	-46	0	multi-exon	FALSE	canonical	3	24	junction_7	5.3433861125628	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTGGTGTTTGGTCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	44259069	44150963	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44220467_44220527_44251736_44252111_44258989
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033795	chr5	+	319	1	ISM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	18982	17	3147	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	18	True	AATAAA	-17	NA	45669697	45670016	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_45669700_45670000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033873	chr5	-	1662	13	ISM	ENSMUSG00000029191.17	ENSMUST00000203471.3	3952	25	-27	17149	-24	-15505	5prime_fragment	FALSE	canonical	3	498	junction_1	41.5333701176937	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTCCAGCCAAGAAGGAG	-1	True	NA	NA	False	AAAAAG	-6	NA	65492988	65437093	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033878	chr5	-	793	8	FSM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	-49	-6	-49	6	multi-exon	FALSE	canonical	3	5084	junction_7	3201.89202994551	9475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTTGTCTTTTCTGATT	NA	False	NA	0	True	AATAAA	-22	NA	65548836	65545700	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033883	chr5	-	708	8	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	4860.81001060355	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547841_65548081_65548198_65548288_65548336_65548718
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033884	chr5	-	1085	7	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	5084	junction_6	3067.5566643322	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_65545785_65545904_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033887	chr5	-	696	8	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	4694.53977227474	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_-_65545785_65545904_65546023_65546413_65546495_65546818_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033888	chr5	-	783	7	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	5084	junction_6	3396.55881820933	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548741	65545706	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548336_65548718
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033894	chr5	-	1411	6	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	5084	junction_5	2801.23648412625	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_65545785_65545904_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033909	chr5	-	720	8	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	5016.85754964892	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_65545811_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033917	chr5	-	3038	1	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-2	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548744	65545706	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_65545700_65548700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033971	chr5	+	1643	9	FSM	ENSMUSG00000037720.17	ENSMUST00000160352.8	5322	9	-20	3699	-19	1103	multi-exon	FALSE	canonical	3	67	junction_8	122.604483502847	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATTTCTAATGATGTTTT	NA	False	NA	19	True	AATAAA	-26	NA	67418019	67445105	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438_67443560_67444352
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000033989	chr5	-	1467	5	FSM	ENSMUSG00000029213.12	ENSMUST00000013693.11	3895	5	-5	2433	-5	3	multi-exon	FALSE	canonical	3	313	junction_3	25.4889682019496	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGCTTGATTTCAGT	NA	False	NA	-1	True	AATACA	-17	NA	72325537	72316350	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325421
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034032	chr5	+	751	2	NIC	ENSMUSG00000106943.3	novel	575	3	NA	NA	36	0	intron_retention	FALSE	canonical	3	119	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTTCACTTGTTCTT	NA	False	NA	19	True	AATAAA	-21	NA	74253779	74254998	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_+_74254081_74254548
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034035	chr5	+	1219	1	FSM	ENSMUSG00000093355.3	ENSMUST00000175614.3	121	1	-411	-687	-411	687	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTTCACTTGTTCTT	NA	False	NA	19	True	AATAAA	-21	NA	74253779	74254998	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_74253800_74255000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034042	chr5	+	2005	17	FSM	ENSMUSG00000029227.16	ENSMUST00000080164.12	4673	17	31	2637	1	8	multi-exon	FALSE	canonical	3	373	junction_9	134.520909155417	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTTGTAATATTTA	NA	False	NA	30	True	AATAAA	-31	NA	74696140	74756814	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034064	chr5	+	1052	4	ISM	ENSMUSG00000029234.14	ENSMUST00000031144.14	1897	6	20373	0	133	0	3prime_fragment	FALSE	canonical	3	1062	junction_1	85.1756355355737	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTCCTCGTGTGTTA	NA	False	NA	7	True	AATAAA	-15	NA	76352099	76357092	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_76352130_76352483_76352664_76355648_76355755_76356356
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034086	chr5	-	2080	1	NIC	ENSMUSG00000029246.15	novel	4158	12	NA	NA	35759	-51	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATCTGATTTTTTAGG	NA	False	NA	-2	True	TATAAA	-20	NA	77063253	77061173	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_77061200_77063300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034131	chr5	+	1186	1	FSM	ENSMUSG00000079067.6	ENSMUST00000120716.2	279	1	-97	-810	-97	810	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTCAATTTATTACATTAA	NA	False	NA	NA	False	AATAAA	-34	NA	84271074	84272260	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_84271100_84272300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034138	chr5	+	2354	14	ISM	ENSMUSG00000035851.15	ENSMUST00000120498.8	3269	17	12799	0	1377	0	3prime_fragment	FALSE	canonical	3	183	junction_10	31.6023742647858	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTATTTCCTTGTCT	NA	False	NA	13	True	AATAAA	-21	NA	86964890	86984518	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979655_86979696_86979806_86979870_86981366_86981502_86983542
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034141	chr5	+	840	1	ISM	ENSMUSG00000035851.15	ENSMUST00000120498.8	3269	17	31587	0	4057	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTATTTCCTTGTCT	NA	False	NA	13	True	AATAAA	-21	NA	86983678	86984518	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_86983700_86984500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034150	chr5	+	2915	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	159	4	159	-4	multi-exon	FALSE	canonical	3	177	junction_6	17.3052657368277	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTCTGAGACTTTAAAAT	NA	False	NA	23	True	AATAAA	-20	NA	88913013	88931136	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034154	chr5	-	2322	1	Intergenic	novelGene_259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACATTATTGTAAAGTC	NA	False	NA	NA	False	NA	NA	NA	89356956	89354634	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_-_89354600_89357000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034192	chr5	+	105	1	Intergenic	novelGene_260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTAATACAAGCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	92259205	92259310	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_92259200_92259300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034194	chr5	+	3907	24	FSM	ENSMUSG00000029407.11	ENSMUST00000031355.10	3898	24	-4	-5	-4	2	multi-exon	TRUE	canonical	0	0	junction_12	100.480471444838	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTCATTGTTCCCTTT	NA	False	NA	15	True	AATAAA	-23	NA	92285792	92350659	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314389_92314491_92314884_92314988_92315136_92315193_92318531_92318653_92321784_92321964_92325293_92325435_92328400_92328490_92329198_92329354_92329756_92329969_92335093_92335205_92335556_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034224	chr5	+	1276	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-72	-202	-72	202	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACACCGTCAATAAGACAAA	NA	False	NA	NA	False	AATAAA	-38	NA	96009500	96010776	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_96009500_96010800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034245	chr5	-	2449	8	FSM	ENSMUSG00000029328.16	ENSMUST00000128187.8	2752	8	308	-5	-19	5	multi-exon	FALSE	canonical	3	572	junction_1	185.830183616271	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAGTCTTGCTATGTATG	NA	False	NA	-9	True	AATAAA	-23	NA	100186773	100181430	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034259	chr5	-	2052	8	NIC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-16	0	intron_retention	FALSE	canonical	3	230	junction_1	297.206243239284	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186770	100182579	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034261	chr5	-	2419	7	FSM	ENSMUSG00000029328.16	ENSMUST00000153442.8	2374	7	-45	0	-19	0	multi-exon	FALSE	canonical	3	934	junction_3	92.4764234218046	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186773	100182579	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034268	chr5	-	2846	6	NIC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-15	0	intron_retention	FALSE	canonical	3	110	junction_5	383.038588134407	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034269	chr5	-	2700	6	NIC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-15	0	intron_retention	FALSE	canonical	3	934	junction_2	94.4681957062799	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034307	chr5	+	460	5	FSM	ENSMUSG00000016833.15	ENSMUST00000112898.8	460	5	6	-6	0	-1	multi-exon	FALSE	canonical	3	63	junction_3	755.69086768334	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATTTGAGTGGAAATGTC	NA	False	NA	47	True	AATAAA	-29	NA	100946608	100952333	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100951835_100951896_100952197
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034319	chr5	+	902	3	NIC	ENSMUSG00000092354.8	novel	619	3	NA	NA	-53	0	intron_retention	FALSE	canonical	3	132	junction_1	6	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATTTCCTTTGGCTCA	NA	False	NA	15	True	ATTAAA	-25	NA	101987967	101992198	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_+_101988098_101989616_101989940_101991749
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034324	chr5	+	229	1	Intergenic	novelGene_261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAACTGAGAATGTAGCTC	NA	False	NA	NA	False	NA	NA	NA	103836018	103836247	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_103836000_103836200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034330	chr5	+	213	1	Intergenic	novelGene_262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTTCAGAATAATGATAAAT	1601	False	NA	NA	False	NA	NA	NA	104172288	104172501	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_104172300_104172500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034335	chr5	+	1350	8	FSM	ENSMUSG00000029310.14	ENSMUST00000031250.14	1488	8	128	10	29	-10	multi-exon	FALSE	canonical	3	305	junction_1	16.2468207250979	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGGTGACTTGTGTTTC	NA	False	NA	10	True	AATAAA	-13	NA	104194862	104213235	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_104195013_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034349	chr5	+	2585	6	FSM	ENSMUSG00000029304.15	ENSMUST00000112747.2	1507	6	-1071	-7	0	0	multi-exon	FALSE	canonical	3	5474	junction_2	333.11595578717	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	31	True	AATAAA	-18	NA	104582986	104588916	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034352	chr5	+	781	1	Genic_Genomic	ENSMUSG00000029304.15	novel	NA	NA	NA	NA	4081	3	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGTGGTGTCAATTATT	NA	False	NA	34	True	AATAAA	-21	NA	104588138	104588919	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr5_+_104588100_104588900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034354	chr5	+	2726	4	Intergenic	novelGene_263	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	93	junction_1	10.4243305140746	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTGTGTGTTGAATTAC	NA	False	NA	NA	False	AATAAA	-17	NA	104719568	104732486	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_104719638_104728353_104728481_104728722_104728784_104730017
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034357	chr5	+	199	1	Intergenic	novelGene_264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGCTAAAGAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	104725131	104725330	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_104725100_104725300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034359	chr5	+	2079	1	Intergenic	novelGene_265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTGTGTGTTGAATTAC	NA	False	NA	NA	False	AATAAA	-17	NA	104730407	104732486	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_104730400_104732500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034362	chr5	+	297	2	Intergenic	novelGene_266	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTTTGGTCTTTTTTGGT	NA	False	NA	NA	False	AATATA	-11	NA	104757285	104872199	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_104757425_104872041
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034367	chr5	-	182	1	Intergenic	novelGene_267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATTAACTCAAACAAAT	NA	False	NA	NA	False	NA	NA	NA	104773708	104773526	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_-_104773500_104773700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034376	chr5	-	2798	4	NIC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	63	2	combination_of_known_splicesites	FALSE	canonical	3	193	junction_3	15.5134350376268	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGGAATTGTGCGTTTG	NA	False	NA	-7	True	NA	NA	NA	105007873	104961032	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_104963302_104964564_104964626_104964862_104964990_105007532
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034380	chr5	+	771	1	Intergenic	novelGene_268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCCGTGTTCGACTGTCT	8320	False	NA	NA	False	NA	NA	NA	105507941	105508712	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_105507900_105508700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034388	chr5	+	681	1	ISM	ENSMUSG00000046079.17	ENSMUST00000060531.16	3923	3	114561	5	-9981	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAGTGGTTCACAACCTT	NA	False	NA	19	True	AATAAA	-30	NA	105962395	105963076	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_105962400_105963100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034390	chr5	+	209	1	Intergenic	novelGene_269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTGGTGAGATGGCTCAG	NA	False	NA	NA	False	NA	NA	NA	106012710	106012919	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_106012700_106012900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034395	chr5	+	2942	12	FSM	ENSMUSG00000029283.18	ENSMUST00000031221.12	2961	12	27	-8	27	8	multi-exon	FALSE	canonical	3	169	junction_8	37.8828119074671	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTTATTTAAAGAGTAATA	NA	False	NA	18	True	AATAAA	-23	NA	107112214	107132306	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034407	chr5	+	2284	13	FSM	ENSMUSG00000033773.15	ENSMUST00000065422.12	2268	13	-14	-2	0	2	multi-exon	TRUE	canonical	3	138	junction_1	12.1951720866178	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTTCAGAAGCTGACATT	NA	False	NA	28	True	AATAAA	-21	NA	107745586	107809706	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034420	chr5	-	1799	5	FSM	ENSMUSG00000029270.11	ENSMUST00000031198.11	2721	5	14	908	14	742	multi-exon	FALSE	canonical	3	143	junction_2	18.0883249639097	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTACTGTGTACTTACA	NA	False	NA	NA	False	ATTAAA	-20	NA	108134937	108056826	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_108058083_108059477_108059655_108062211_108062320_108072450_108072586_108134814
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034427	chr5	+	3970	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4942	2	intron_retention	FALSE	canonical	0	0	junction_3	488.414344003707	192	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	35	True	ATTAAA	-36	NA	108208597	108256872	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034444	chr5	-	2317	4	FSM	ENSMUSG00000063406.12	ENSMUST00000002837.11	3800	4	56	1427	1	7	multi-exon	FALSE	canonical	3	224	junction_1	14.1656862405839	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTGCCTTTCTGGTTTA	NA	False	NA	-1	True	AATAAA	-19	NA	108280430	108270919	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_108272626_108273766_108273951_108277883_108277982_108280101
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034451	chr5	+	1750	1	ISM	ENSMUSG00000029265.5	ENSMUST00000031190.5	3085	3	9880	0	1857	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTTTATATTTAATGAT	NA	False	NA	NA	False	AATAAA	-21	NA	108426642	108428392	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_108426600_108428400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034477	chr5	-	691	3	NIC	ENSMUSG00000033467.13	novel	1405	8	NA	NA	211	0	combination_of_known_splicesites	FALSE	canonical	3	58	junction_2	278.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109704128	109702574	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_109702937_109703138_109703224_109703884
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034497	chr5	-	431	3	FSM	ENSMUSG00000072762.10	ENSMUST00000100937.4	599	3	168	0	-121	0	multi-exon	FALSE	canonical	3	125	junction_2	15.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTGATTAAATTCTCA	7825	False	NA	NA	False	NA	NA	NA	109899584	109886696	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_109886877_109887064_109887192_109899460
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034506	chr5	-	428	3	Intergenic	novelGene_270	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	209	junction_2	23	27	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTGATTAAATTCTCA	NA	False	NA	NA	False	NA	NA	NA	109992921	109984496	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_-_109984676_109984863_109984991_109992799
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034515	chr5	+	471	3	FSM	ENSMUSG00000066613.15	ENSMUST00000099484.9	451	3	-15	-5	-14	5	multi-exon	FALSE	canonical	3	208	junction_1	18.5	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGTGTCTGATTTGTGT	8356	False	NA	NA	False	NA	NA	NA	110144372	110155338	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_110144500_110154809_110154937_110155121
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034523	chr5	+	378	2	Intergenic	novelGene_271	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTCTTAGCTCCATCTT	NA	False	NA	NA	False	NA	NA	NA	110223273	110223750	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_110223459_110223557
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034547	chr5	-	2052	6	FSM	ENSMUSG00000029500.17	ENSMUST00000059229.16	2044	6	-2	-6	-2	6	multi-exon	FALSE	canonical	3	390	junction_2	111.169420255752	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGTTTTAAAGGGAAAAAG	NA	False	NA	-14	True	AATAAA	-24	NA	110417755	110407014	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_110408304_110413377_110413509_110413605_110413695_110413776_110413903_110414952_110415132_110417517
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034581	chr5	-	1506	6	FSM	ENSMUSG00000029507.17	ENSMUST00000031481.13	1563	6	54	3	-9	-2	multi-exon	FALSE	canonical	3	14	junction_5	204.990146104636	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTCTTTGCCTATTTTCC	NA	False	NA	-2	True	ATTAAA	-19	NA	110928471	110921535	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928419
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034597	chr5	-	597	3	ISM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	0	6782	0	-6771	5prime_fragment	FALSE	canonical	3	372	junction_2	33.5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGTTCTTTGTAAATCC	NA	False	NA	NA	False	TTTAAA	-18	NA	110987643	110983717	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_110983936_110984172_110984270_110987361
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034654	chr5	-	3593	19	FSM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	856	-2	-16	2	multi-exon	FALSE	canonical	3	367	junction_17	27.7084133944819	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGCATTGCAGCTGG	NA	False	NA	-14	True	ATTAAA	-18	NA	113909715	113880504	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897334_113899155_113899341_113900889_113900995_113902133_113902261_113909381
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034705	chr5	+	1686	11	FSM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	-26	0	-6	0	multi-exon	FALSE	canonical	3	102	junction_10	13.5410487038486	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGCCCTGTGGGAAG	NA	False	NA	NA	False	AATAAA	-20	NA	114582340	114598652	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034715	chr5	-	1728	5	FSM	ENSMUSG00000011884.14	ENSMUST00000012028.14	1762	5	29	5	-14	-5	multi-exon	TRUE	canonical	3	1353	junction_4	27.6541136180497	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCATGTGTCTGTGGCGC	NA	False	NA	-2	True	AATAAA	-24	NA	114829016	114807463	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_114808651_114812114_114812266_114814325_114814460_114815681_114815741_114828819
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034718	chr5	-	196	1	Intergenic	novelGene_272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTAGTGGGTACAAAGTT	8110	False	NA	-22	True	NA	NA	NA	114845471	114845275	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_-_114845300_114845500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034723	chr5	+	1858	4	ISM	ENSMUSG00000041870.18	ENSMUST00000102578.11	3717	15	26100	1	1206	-1	3prime_fragment	FALSE	canonical	3	412	junction_1	25.9401019444583	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTGAGTTTCATTTCT	919	False	NA	28	True	AGTAAA	-18	NA	114938837	114943882	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_114938874_114939716_114939878_114941617_114941686_114942289
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034744	chr5	+	129	1	ISM	ENSMUSG00000029550.12	ENSMUST00000031530.9	3204	11	87525	0	3905	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGTCCTGACTTCACT	1193	False	NA	28	True	AATAAA	-16	NA	115236720	115236849	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_115236700_115236800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034763	chr5	-	824	3	ISM	ENSMUSG00000029544.17	ENSMUST00000112109.8	1071	7	8092	-25	7929	0	3prime_fragment	FALSE	canonical	3	234	junction_2	2	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	2377	False	NA	-1	True	AATAAA	-20	NA	115311389	115306747	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_115307208_115310817_115310966_115311173
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034764	chr5	-	1262	7	FSM	ENSMUSG00000029544.17	ENSMUST00000031519.14	1370	7	108	0	-79	0	multi-exon	FALSE	canonical	3	35	junction_6	80.5826008239716	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	9973	False	NA	-1	True	AATAAA	-20	NA	115324259	115306747	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318850_115319031_115324070
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034785	chr5	+	261	1	ISM	ENSMUSG00000060152.15	ENSMUST00000081497.13	1025	6	4876	19	371	6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCACTTGCCTTGAATGT	NA	False	NA	17	True	AATAAA	-19	NA	115378770	115379031	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_115378800_115379000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034791	chr5	-	115	1	ISM	ENSMUSG00000041740.17	ENSMUST00000112097.8	3476	17	31014	358	805	0	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCCTTCCCGACAAGCAT	NA	False	NA	-20	True	AATAAA	-20	NA	115379943	115379828	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_115379800_115379900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034794	chr5	-	967	7	ISM	ENSMUSG00000041740.17	ENSMUST00000040555.15	3106	17	25622	0	-1195	0	3prime_fragment	FALSE	canonical	3	224	junction_1	544.903482788976	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCCTTCCCGACAAGCAT	NA	False	NA	-20	True	AATAAA	-20	NA	115385329	115379828	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_115380118_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034801	chr5	-	710	3	FSM	ENSMUSG00000009013.6	ENSMUST00000009157.4	2030	3	9	1311	9	1	multi-exon	FALSE	canonical	3	3784	junction_1	210.5	2407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTGCTAGTTTGTTCAA	NA	False	NA	0	True	AATAAA	-17	NA	115439049	115436479	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_115436893_115438571_115438710_115438890
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034805	chr5	-	701	3	NNC	ENSMUSG00000009013.6	novel	2030	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	367	junction_2	1708.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTGCTAGTTTGTTCA	NA	False	NA	-1	True	AATAAA	-16	NA	115438993	115436480	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_-_115436893_115438571_115438710_115438842
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034846	chr5	+	198	1	Intergenic	novelGene_273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTCAGGGGCTGGGGCTG	7301	False	NA	NA	False	NA	NA	NA	115639346	115639544	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_115639300_115639500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034847	chr5	+	1295	7	NNC	ENSMUSG00000067274.11	novel	694	3	NA	NA	-2152	-92	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	8177.45098154404	874	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTGTTTTTTGAGACA	NA	False	NA	25	True	ATTAAA	-22	NA	115695373	115701694	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_+_115695476_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034849	chr5	+	1375	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	-15	-2	-15	2	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	21371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAAGCCTGGCCTTTAT	NA	False	NA	5	True	ATTAAA	-16	NA	115697510	115701788	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034857	chr5	+	1347	6	NIC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-24	-212	intron_retention	FALSE	canonical	3	6763	junction_5	6890.1060833633	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697571	115701574	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034869	chr5	+	224	1	Intergenic	novelGene_274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTTTGTATCTTGATTT	NA	False	NA	NA	False	TTTAAA	-27	NA	115802506	115802730	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_115802500_115802700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034873	chr5	+	230	1	Genic_Genomic	ENSMUSG00000029516.20	novel	NA	NA	NA	NA	11096	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTTGTTTTATTGAG	NA	False	NA	NA	False	AATAAA	-17	NA	116136328	116136558	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr5_+_116136300_116136600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034888	chr5	-	1208	2	NNC	ENSMUSG00000041548.5	novel	1816	3	NA	NA	5511	-3	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTTGTGCTTCATTTAG	NA	False	NA	-3	True	AATAAA	-17	NA	116548440	116546552	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_-_116547550_116548229
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034901	chr5	-	688	1	ISM	ENSMUSG00000066900.12	ENSMUST00000086471.12	2425	12	23631	0	6444	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCACGTGGTCTGTTTC	NA	False	NA	-4	True	GATAAA	-18	NA	117230432	117229744	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_117229700_117230400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034941	chr5	+	203	1	Intergenic	novelGene_275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACACTGGCTGCTCTTGCA	NA	False	NA	NA	False	NA	NA	NA	118581112	118581315	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_118581100_118581300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034945	chr5	+	394	2	ISM	ENSMUSG00000018604.19	ENSMUST00000121021.8	4777	8	154	13140	-2	-2079	5prime_fragment	FALSE	canonical	3	95	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCCGAGAACCTTGCGCT	NA	False	NA	NA	False	AAAAAG	-14	NA	119809080	119809649	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_119809123_119809297
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034952	chr5	-	980	4	ISM	ENSMUSG00000029598.13	ENSMUST00000031597.7	4208	12	16124	1965	16100	0	3prime_fragment	FALSE	canonical	3	256	junction_2	20.757863302587	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGAGGGCCTTGAGTCTT	8719	False	NA	-5	True	NA	NA	NA	120625566	120623311	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_120623904_120624104_120624268_120624712_120624866_120625494
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034959	chr5	-	1577	3	FSM	ENSMUSG00000029600.11	ENSMUST00000031599.9	1573	3	-4	0	-4	0	multi-exon	FALSE	canonical	3	77	junction_2	1.5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTAGTGTGTTACTTTTT	6311	False	NA	NA	False	ATTAAA	-20	NA	120750658	120747122	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_120748028_120749442_120749795_120750338
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034966	chr5	-	185	1	Intergenic	novelGene_276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAATCAAATAATAATAATA	385	False	NA	NA	False	NA	NA	NA	120777261	120777076	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_-_120777100_120777300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034977	chr5	+	2022	7	NNC	ENSMUSG00000032623.10	novel	2021	6	NA	NA	-25816	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.7487796249151	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAATGAATTAATTTATTC	NA	False	NA	15	True	ATTAAA	-21	NA	121026782	121059711	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_+_121026862_121052672_121053130_121053724_121054014_121054901_121055099_121057064_121057298_121057959_121058114_121059098
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034987	chr5	-	1447	7	NNC	ENSMUSG00000052776.11	novel	1885	7	NA	NA	17	-463	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	226.213026444839	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121045567	121034781	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_-_121035088_121035242_121035312_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000034998	chr5	+	1787	6	NIC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-3	1	intron_retention	FALSE	canonical	3	14010	junction_2	1238.46727853424	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	2	True	ATTAAA	-16	NA	121342605	121347030	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035012	chr5	-	1300	3	FSM	ENSMUSG00000029616.10	ENSMUST00000130451.2	5204	3	-23	3927	-23	5	multi-exon	FALSE	canonical	3	820	junction_1	20.5	448	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTTCTTTTTAGATAAT	3189	False	NA	-36	True	AATAAA	-19	NA	121590592	121582813	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_121583636_121585203_121585343_121590253
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035023	chr5	-	2022	13	FSM	ENSMUSG00000029455.15	ENSMUST00000031411.15	3867	13	195	1650	-47	201	multi-exon	TRUE	canonical	3	476	junction_10	93.9036148872283	304	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGAGTCTTATCTCTGTT	NA	False	NA	3	True	AATAAA	-45	NA	121731692	121705739	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_121706087_121706988_121707104_121708666_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035042	chr5	+	1011	5	FSM	ENSMUSG00000029462.19	ENSMUST00000118830.8	1014	5	6	-3	6	3	multi-exon	FALSE	canonical	3	527	junction_1	833.067074130289	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTTGAAAACCTGTGTT	701	False	NA	20	True	AATAAA	-20	NA	122492453	122501352	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_122492540_122494856_122494869_122498075_122498268_122500098_122500335_122500867
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035057	chr5	+	1584	7	ISM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	92	0	16	0	intron_retention	FALSE	canonical	3	424	junction_4	38.3608596821755	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGAGGTTTGTAAA	8131	False	NA	NA	False	AATAAA	-42	NA	122510605	122520965	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122519558_122520110
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035088	chr5	+	351	1	ISM	ENSMUSG00000029470.16	ENSMUST00000031429.14	2702	12	21152	692	1032	2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTCTGTGCTGCCTCC	NA	False	NA	17	True	ATTAAA	-22	NA	122866758	122867109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_122866800_122867100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035089	chr5	-	587	2	ISM	ENSMUSG00000029472.14	ENSMUST00000199130.2	687	4	5201	-456	5201	0	3prime_fragment	FALSE	canonical	3	1940	junction_1	0	920	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCATCCTCTTAAATC	NA	False	NA	NA	False	AATAAA	-2	NA	122926391	122925521	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_122926082_122926364
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035092	chr5	-	302	1	NIC	ENSMUSG00000029472.14	novel	2760	17	NA	NA	5509	2	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGTTTTTTTTTATTTTT	NA	False	NA	-15	True	AATAAA	-24	NA	122926083	122925781	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_122925800_122926100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035100	chr5	+	1716	5	NIC	ENSMUSG00000029474.8	novel	4440	6	NA	NA	50	-2346	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	85.4005269304587	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTAGTTTAATATTGTT	673	False	NA	9	True	AATAAA	-16	NA	122988269	123007008	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_+_122988362_123002049_123002458_123004864_123004970_123005182_123005385_123006099
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035129	chr5	-	2236	11	FSM	ENSMUSG00000029422.16	ENSMUST00000182955.8	1685	11	-10	-541	0	0	multi-exon	FALSE	canonical	3	100	junction_10	161.696753214157	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTGTATGCTATTTGC	4354	False	NA	NA	False	AATAAA	-15	NA	123887444	123866488	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123883559_123883653_123887351
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035133	chr5	-	2042	12	FSM	ENSMUSG00000029422.16	ENSMUST00000050827.14	2344	12	8	294	0	4	multi-exon	FALSE	canonical	3	64	junction_7	200.336700053759	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTGTTAATTTAAGTTAC	4354	False	NA	-4	True	AATAAA	-17	NA	123887444	123866782	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035143	chr5	-	1386	1	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	0	-4427	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAACCCTGTCTCGAAA	4354	False	NA	NA	False	NA	NA	NA	123887444	123886058	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_123886100_123887400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035160	chr5	-	2474	4	FSM	ENSMUSG00000066278.7	ENSMUST00000040967.9	2522	4	48	0	36	0	multi-exon	FALSE	canonical	3	122	junction_3	15.8394724940223	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGTGTTTCTCTCAT	2284	False	NA	-1	True	AATAAA	-20	NA	124170285	124142703	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_124144802_124145671_124145755_124148750_124148923_124170164
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035201	chr5	+	196	1	Intergenic	novelGene_277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTATAGCACCATGCCCA	NA	False	NA	NA	False	NA	NA	NA	124677683	124677879	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_124677700_124677900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035204	chr5	+	356	1	ISM	ENSMUSG00000029390.14	ENSMUST00000060226.11	2074	4	9453	3	7068	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTTGTGTTTTATATTA	NA	False	NA	9	True	AATAAA	-19	NA	124688210	124688566	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_124688200_124688600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035220	chr5	+	2420	18	FSM	ENSMUSG00000118662.2	ENSMUST00000239501.2	2735	18	35	280	0	-280	multi-exon	TRUE	canonical	3	31	junction_8	6.97499240366195	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTAGTGTTAAGTGAACG	NA	False	NA	34	True	AATAAA	-24	NA	124736846	124765523	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_124737020_124737197_124737306_124737769_124737847_124740077_124740274_124741810_124741912_124745798_124745996_124746581_124746706_124748332_124748475_124750706_124750773_124753213_124753349_124754531_124754610_124757093_124757172_124758176_124758289_124761069_124761177_124762380_124762538_124763745_124763872_124763959_124764049_124765169
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035229	chr5	-	2491	13	FSM	ENSMUSG00000037936.16	ENSMUST00000086075.13	2521	13	30	0	7	0	multi-exon	TRUE	canonical	3	188	junction_1	171.680966232913	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTTCTGTGACTGTT	NA	False	NA	-1	True	AATAAA	-21	NA	125418128	125354150	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_125354930_125358168_125358298_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035236	chr5	-	85	1	ISM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	3959	6	3131	6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	-6	True	AATAAA	-20	NA	125463119	125463034	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_125463000_125463100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035242	chr5	+	3175	18	FSM	ENSMUSG00000029482.5	ENSMUST00000031445.5	3239	18	59	5	59	-5	multi-exon	FALSE	canonical	3	83	junction_4	14.7470013373196	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTGCAGTACGCGTGTGT	NA	False	NA	5	True	AATAAA	-22	NA	125552936	125594469	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_125553174_125559893_125559998_125561600_125561722_125566846_125566961_125571970_125572069_125580246_125580362_125580612_125580695_125583212_125583361_125585740_125585822_125586842_125586968_125588703_125588769_125588909_125589033_125589688_125589803_125590165_125590292_125590982_125591053_125591232_125591292_125591991_125592195_125593279
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035266	chr5	+	1114	7	NNC	ENSMUSG00000029430.14	novel	2423	6	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5691.21391317841	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_+_129097440_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035272	chr5	+	323	1	ISM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	2775	1157	2572	-1157	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	3117	False	NA	NA	False	AATAAA	-23	NA	129099907	129100230	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_129099900_129100200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035282	chr5	+	984	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119576.8	5061	4	7	4070	0	6	multi-exon	FALSE	canonical	3	150	junction_2	308.575220435256	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGCTTGATTTTTCAAAA	761	False	NA	29	True	CATAAA	-18	NA	129792567	129795550	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_129792614_129792747_129792975_129793790_129793931_129794979
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035326	chr5	+	208	1	Genic_Genomic	ENSMUSG00000029447.14	novel	NA	NA	NA	NA	983	5	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACTAGTTTGAATACTTT	NA	False	NA	NA	False	NA	NA	NA	129867924	129868132	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr5_+_129867900_129868100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035336	chr5	-	917	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	0	-2	0	2	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	6899	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTAGCGTCCTTATTGTGT	2064	False	NA	-1	True	AATAAA	-20	NA	129916311	129909994	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035379	chr5	-	353	1	ISM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	9447	0	8002	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	False	NA	0	True	AATAAA	-17	NA	130274924	130274571	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_130274600_130274900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035385	chr5	+	2529	16	NIC	ENSMUSG00000056310.15	novel	4698	9	NA	NA	-23	-406	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	68.4530658350831	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGGCTTTGTCCTTAC	3489	False	NA	20	True	AATAAA	-23	NA	130284436	130369998	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_+_130284487_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035394	chr5	+	575	1	FSM	ENSMUSG00000058905.6	ENSMUST00000145209.2	414	1	-49	-112	-49	112	mono-exon	FALSE	NA	NA	NA	NA	NA	2569	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAGCAGGCAGGAATCGG	NA	False	NA	NA	False	NA	NA	NA	133503912	133504487	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_133503900_133504500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035398	chr5	+	204	1	Intergenic	novelGene_278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTCGTCTACATAGCAAG	4611	False	NA	NA	False	NA	NA	NA	134188633	134188837	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_134188600_134188800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035415	chr5	-	1677	1	ISM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	17938	155	17750	1	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATGCTTGTCTTTCTGGC	7151	False	NA	-3	True	AATAAA	-19	NA	134650406	134648729	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_134648700_134650400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035454	chr5	-	1311	12	ISM	ENSMUSG00000005378.18	ENSMUST00000085984.11	1516	13	553	0	-23	0	3prime_fragment	FALSE	canonical	3	942	junction_2	58.9567708278386	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCCCTGGCCCTGCA	NA	False	NA	-1	True	ATTAAA	-16	NA	135092967	135081810	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092737_135092776_135092867
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035457	chr5	+	1141	1	FSM	ENSMUSG00000061118.9	ENSMUST00000071263.7	1661	1	24	496	24	-496	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAAATTTGTTTTTCTGTG	3156	False	NA	51	True	AAAAAG	-22	NA	135093079	135094220	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_135093100_135094200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035472	chr5	-	179	1	Intergenic	novelGene_279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAATTAACTTAAAT	NA	False	NA	NA	False	NA	NA	NA	135311354	135311175	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_-_135311200_135311400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035491	chr5	+	1711	11	NNC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	113.163421652051	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGATCACAGTTTTATT	NA	False	NA	18	True	AATAAA	-18	NA	135398806	135404997	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402104_135402228_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035499	chr5	+	1914	4	FSM	ENSMUSG00000039917.11	ENSMUST00000043707.7	4207	4	65	2228	-21	-379	multi-exon	FALSE	canonical	3	209	junction_1	25.703436864876	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGTGTGGCATACTGTG	NA	False	NA	17	True	TATAAA	-21	NA	135661536	135673002	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_135661773_135664848_135665257_135667943_135668095_135671883
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035509	chr5	+	206	1	Intergenic	novelGene_280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATATCAACCAACCAAGCT	5672	False	NA	NA	False	NA	NA	NA	135721660	135721866	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_135721700_135721900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035536	chr5	+	605	4	FSM	ENSMUSG00000039771.14	ENSMUST00000041366.14	646	4	43	-2	-28	2	multi-exon	FALSE	canonical	3	1103	junction_2	77.5471182930453	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCAGTGTGTGGACTGTC	9255	False	NA	32	True	AATAAA	-21	NA	136145527	136151803	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_136145660_136148848_136148939_136150942_136151118_136151595
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035540	chr5	+	207	1	NIC	ENSMUSG00000039771.14	novel	646	4	NA	NA	6039	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCAGTGTGTGGACTG	NA	False	NA	30	True	AATAAA	-19	NA	136151594	136151801	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_+_136151600_136151800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035601	chr5	+	223	1	Intergenic	novelGene_281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGATCCCTGGCATCCAC	NA	False	NA	NA	False	NA	NA	NA	137280374	137280597	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_137280400_137280600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035612	chr5	-	867	2	FSM	ENSMUSG00000029715.6	ENSMUST00000031728.5	881	2	27	-13	27	12	multi-exon	FALSE	canonical	3	320	junction_1	0	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCTCTTTTTCCTAGTGT	1666	False	NA	-20	True	AATAAA	-32	NA	137500753	137499687	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_137500342_137500540
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035624	chr5	-	1569	8	ISM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	788	0	3	0	3prime_fragment	FALSE	canonical	3	423	junction_6	64.4265124789793	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGTGTCTGAGGTTCTGT	4811	False	NA	-2	True	AATAAA	-21	NA	137608961	137603364	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035702	chr5	-	2391	15	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	170	junction_14	144.727259325383	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCCTCCCGCATCACAT	1952	False	NA	-3	True	AATAAA	-19	NA	138185488	138176877	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185345
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035772	chr5	+	168	2	Intergenic	novelGene_282	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	103	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTAAAAATAAGTAAATA	NA	False	NA	NA	False	NA	NA	NA	139470808	139497764	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr5_+_139470860_139497647
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035787	chr5	-	1436	3	FSM	ENSMUSG00000029557.8	ENSMUST00000031536.8	1443	3	7	0	7	0	multi-exon	FALSE	canonical	3	45	junction_2	12	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTACTTGTCTGTTT	3908	False	NA	-5	True	AAAACA	-37	NA	140317646	140313428	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_140314536_140316734_140317025_140317607
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035816	chr5	+	1430	2	ISM	ENSMUSG00000050022.17	ENSMUST00000176035.2	2402	4	-8	8129	-8	0	5prime_fragment	FALSE	canonical	3	12	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTGTGTCATGTATTGT	NA	False	NA	23	True	NA	NA	NA	140735029	140739065	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_140735087_140737692
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035837	chr5	+	2663	5	FSM	ENSMUSG00000029581.15	ENSMUST00000031565.15	2675	5	12	0	12	0	multi-exon	FALSE	canonical	3	2634	junction_2	132.012310032057	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGTGTGTGTCTCAGGGG	NA	False	NA	18	True	AATAAA	-18	NA	142946109	142958940	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035842	chr5	+	157	1	ISM	ENSMUSG00000029581.15	ENSMUST00000031565.15	2675	5	12684	2	2942	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCCGTGTGTGTCTCAGG	NA	False	NA	16	True	AATAAA	-16	NA	142958781	142958938	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_142958800_142958900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035856	chr5	-	1416	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	20	junction_4	86.0744812736656	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5305	False	NA	-13	True	AATACA	-26	NA	143314975	143302243	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310154_143310639_143310714_143311853_143311979_143314145_143314326_143314920
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035857	chr5	-	1272	8	NNC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	87.5293536769354	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5305	False	NA	-13	True	AATACA	-26	NA	143314975	143302243	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314201_143314326_143314920
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035866	chr5	-	1554	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_8	94.7198995723707	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5299	False	NA	-13	True	AATACA	-26	NA	143314981	143302243	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314432_143314653_143314920
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035884	chr5	-	488	1	ISM	ENSMUSG00000001847.15	ENSMUST00000080537.14	4159	6	22068	1847	11640	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTGGTTATGCTTGTGTT	NA	False	NA	-8	True	AATAAA	-14	NA	143491723	143491235	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_143491200_143491700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035889	chr5	+	2732	15	FSM	ENSMUSG00000029613.16	ENSMUST00000100487.6	4325	15	59	1534	16	-1534	multi-exon	FALSE	canonical	3	166	junction_1	19.8185647866863	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTGGACAAGTCCCTT	NA	False	NA	20	True	AATAAA	-25	NA	143803601	143839535	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_143803764_143808680_143808840_143810568_143810703_143812477_143812516_143814393_143814494_143816252_143816334_143818970_143819071_143820790_143820849_143821473_143821799_143823667_143823780_143826213_143826315_143833982_143834095_143834292_143834376_143835831_143836066_143838602
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035896	chr5	-	1185	4	FSM	ENSMUSG00000029610.14	ENSMUST00000031613.11	1185	4	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_3	88.5023540176569	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	143846657	143839521	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846398
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035920	chr5	+	280	1	ISM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	13692	1513	684	98	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGTGGTGGCACTCG	NA	False	NA	29	True	AATAAA	-15	NA	145064716	145064996	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_145064700_145065000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035928	chr5	-	498	1	ISM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	10087	885	5321	430	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGTTTGGCAGTTTCT	NA	False	NA	-22	True	ATTAAA	-15	NA	145066961	145066463	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_145066500_145067000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035946	chr5	+	95	1	ISM	ENSMUSG00000038722.18	ENSMUST00000162594.8	867	6	7622	0	3180	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTTCTTTTAAGAGTG	689	False	NA	20	True	AATAAA	-21	NA	145084793	145084888	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_145084800_145084900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035956	chr5	-	502	4	FSM	ENSMUSG00000038690.16	ENSMUST00000161741.8	955	4	455	-2	-15	2	multi-exon	FALSE	canonical	3	4948	junction_3	568.415341101909	2887	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTAGTCATTGTTCTG	9954	False	NA	0	True	AATAAA	-27	NA	145128417	145120505	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145128312
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035976	chr5	+	1178	4	FSM	ENSMUSG00000007812.17	ENSMUST00000085661.9	597	4	-15	-566	-13	0	multi-exon	FALSE	canonical	3	16	junction_2	194.635271440941	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTACTTTTTGTAG	1318	False	NA	NA	False	AATACA	-16	NA	145168551	145174658	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_145168642_145170250_145170413_145172546_145172674_145173859
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000035984	chr5	+	1537	3	ISM	ENSMUSG00000029635.16	ENSMUST00000159615.2	1976	6	4588	-55	3133	0	3prime_fragment	FALSE	canonical	3	84	junction_1	10.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGTGTCAACTATATT	4748	False	NA	NA	False	AATAAA	-20	NA	146236307	146239684	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_+_146236387_146236501_146236661_146238385
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036018	chr5	+	960	3	FSM	ENSMUSG00000029642.12	ENSMUST00000110557.5	1137	3	177	0	-25	0	multi-exon	FALSE	canonical	3	400	junction_1	26.5	356	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTCCTCTTTTGGGTGT	NA	False	NA	16	True	AATAAA	-17	NA	147014332	147048171	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr5_+_147014504_147038038_147038114_147047457
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036039	chr5	-	1344	6	Antisense	novelGene_ENSMUSG00000029651.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_5	7.83326241102646	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGTAGTATACTCTTTC	8597	False	NA	-1	True	NA	NA	NA	147949136	147941084	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Antisense_chr5_-_147941718_147942673_147942827_147943327_147943469_147943860_147944081_147945259_147945334_147949013
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036040	chr5	-	1272	5	Antisense	novelGene_ENSMUSG00000029651.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_2	4.55521678957215	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGTAGTATACTCTTTC	8595	False	NA	-1	True	NA	NA	NA	147949138	147941084	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Antisense_chr5_-_147941718_147942673_147942827_147943327_147943469_147943860_147944081_147949013
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036049	chr5	-	701	1	ISM	ENSMUSG00000041313.15	ENSMUST00000048116.15	7179	13	71794	0	14619	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTGTGTGGTCTCAAGC	NA	False	NA	-3	True	AATAAA	-20	NA	148264920	148264219	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_148264200_148264900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036055	chr5	-	145	1	ISM	ENSMUSG00000001687.16	ENSMUST00000079324.14	2537	5	46540	1343	31468	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCAGTGTGGTCCTTTAT	NA	False	NA	-5	True	AGTAAA	-15	NA	148442932	148442787	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr5_-_148442800_148442900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036071	chr5	-	1714	2	NNC	ENSMUSG00000024437.7	novel	737	2	NA	NA	17	989	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTAGTTCTTTATTTCCA	NA	False	NA	NA	False	AATAAA	-8	NA	149093002	149090928	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_-_149092357_149092716
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036074	chr5	-	1889	2	NNC	ENSMUSG00000024437.7	novel	737	2	NA	NA	17	989	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTAGTTCTTTATTTCCA	NA	False	NA	NA	False	AATAAA	-8	NA	149093002	149090928	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_-_149092532_149092716
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036087	chr5	+	682	2	NNC	ENSMUSG00000029658.18	novel	2482	23	NA	NA	28330	4	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGATTCTCGCTGTTCTTT	4903	False	NA	NA	False	NA	NA	NA	149533572	149535363	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr5_+_149533852_149534960
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036117	chr6	-	300	1	Intergenic	novelGene_283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGGTTTGTTGCATCTTT	NA	False	NA	NA	False	NA	NA	NA	3405056	3404756	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_-_3404800_3405100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036121	chr6	-	1499	4	FSM	ENSMUSG00000032757.7	ENSMUST00000049166.5	1516	4	17	0	17	0	multi-exon	FALSE	canonical	3	308	junction_1	40.3016404408335	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTGTTCTTGGCAT	-18	True	NA	0	True	ATTAAA	-22	NA	4086955	4076898	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_4078037_4079960_4080018_4082457_4082583_4086776
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036151	chr6	-	278	1	Genic_Genomic	ENSMUSG00000029752.13	novel	NA	NA	NA	NA	1943	4	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGTTGTGGGTACCAGT	1884	False	NA	-5	True	AATAAA	-21	NA	7675442	7675164	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr6_-_7675200_7675400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036197	chr6	+	2442	7	FSM	ENSMUSG00000029552.20	ENSMUST00000115467.11	2440	7	0	-2	0	2	multi-exon	FALSE	canonical	3	87	junction_1	5.93717104351896	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGTCTTTCTATGTCCT	-34	True	NA	NA	False	AATAAA	-17	NA	17065147	17105824	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_17065313_17086135_17086222_17096126_17096380_17097259_17097590_17099702_17099919_17100280_17100440_17104591
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036211	chr6	-	228	1	Intergenic	novelGene_284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTATCTAGATTCTTTA	9651	False	NA	0	True	AATAAA	-16	NA	20960692	20960464	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_-_20960500_20960700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036217	chr6	+	503	1	ISM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	24831	1134	22345	1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCGTGATGTGGCAGTTAA	NA	False	NA	23	True	AATATA	-22	NA	21974400	21974903	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_+_21974400_21974900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036233	chr6	-	105	1	Genic_Genomic	ENSMUSG00000023089.13	novel	NA	NA	NA	NA	4100	4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCCATGTTATTGACTT	9264	False	NA	-27	True	ATTAAA	-31	NA	24518765	24518660	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr6_-_24518700_24518800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036240	chr6	+	182	1	Intergenic	novelGene_285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAATAGCTCCATTTACA	NA	False	NA	NA	False	NA	NA	NA	24911459	24911641	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_24911500_24911600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036244	chr6	-	2938	18	FSM	ENSMUSG00000029676.16	ENSMUST00000115330.8	3151	18	8	205	-2	-205	multi-exon	TRUE	canonical	3	94	junction_8	16.939542404853	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTGTCTGTGTGTGTG	8	True	NA	-3	True	AATAAA	-17	NA	25809217	25743940	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873_25805941_25809173
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036281	chr6	+	176	1	Intergenic	novelGene_286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAAAGTGGAAAGC	NA	False	NA	NA	False	NA	NA	NA	29390683	29390859	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_29390700_29390900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036286	chr6	+	686	2	FSM	ENSMUSG00000004285.13	ENSMUST00000004396.13	703	2	21	-4	21	4	multi-exon	FALSE	canonical	3	1924	junction_1	0	567	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGGTATGGATACGTGAA	-11	True	NA	41	True	ATTAAA	-23	NA	29467737	29470515	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_29467974_29470065
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036297	chr6	+	182	1	Intergenic	novelGene_287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATAATACTGACAGTTT	NA	False	NA	NA	False	NA	NA	NA	29788299	29788481	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_29788300_29788500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036303	chr6	+	194	1	Intergenic	novelGene_288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCAGTCGACTGATAGTC	NA	False	NA	NA	False	NA	NA	NA	30038744	30038938	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_30038700_30038900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036314	chr6	-	152	1	FSM	ENSMUSG00000039130.19	ENSMUST00000202393.2	831	1	683	-4	683	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTGCTGCTAGAGAATTG	NA	False	NA	-11	True	AATAAA	-14	NA	30366534	30366382	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_30366400_30366500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036326	chr6	-	3430	11	FSM	ENSMUSG00000029790.17	ENSMUST00000031810.15	3447	11	17	0	17	0	multi-exon	TRUE	canonical	3	75	junction_8	9.18095855561934	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCGTTTGCTATTAATG	-24	True	NA	0	True	ATTAAA	-16	NA	30693731	30653455	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036328	chr6	+	2562	12	FSM	ENSMUSG00000051855.16	ENSMUST00000163949.9	2561	12	-1	0	-1	0	multi-exon	FALSE	canonical	3	246	junction_7	40.2939611577855	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATTCCGGCTTCCCCTCC	-4	True	NA	13	True	AATAAA	-19	NA	30738047	30748461	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_30738335_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036338	chr6	+	2477	18	FSM	ENSMUSG00000025609.16	ENSMUST00000026699.15	11395	18	77	8841	-16	2	multi-exon	FALSE	canonical	1	225	junction_9	99.990726213583	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTATATTTTTCTTTAG	NA	False	NA	19	True	AATAAA	-27	NA	31375746	31484905	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036374	chr6	+	1485	9	FSM	ENSMUSG00000029848.12	ENSMUST00000114999.8	1455	9	-28	-2	-28	0	multi-exon	FALSE	canonical	1	14	junction_3	19.2272592950738	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGGTGTCCTGGCAGT	NA	False	NA	13	True	TATAAA	-18	NA	34897866	34916279	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_34897990_34904653_34904852_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036389	chr6	+	1026	3	FSM	ENSMUSG00000073155.13	ENSMUST00000152147.8	2521	3	7	1488	7	-14	multi-exon	FALSE	canonical	3	978	junction_2	33.5	622	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGTGTGGTGCAAATGT	NA	False	NA	NA	False	ATTAAA	-40	NA	35229595	35238943	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_35229718_35237344_35237399_35238093
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036413	chr6	+	190	1	Intergenic	novelGene_289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACAGAGGGTACCCAAGGG	NA	False	NA	NA	False	NA	NA	NA	38212819	38213009	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_38212800_38213000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036415	chr6	+	498	1	FSM	ENSMUSG00000057696.5	ENSMUST00000119767.2	348	1	-72	-78	-72	78	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAACTCTAACATTCTCCC	1142	False	NA	NA	False	NA	NA	NA	38353669	38354167	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_38353700_38354200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036432	chr6	+	202	1	Intergenic	novelGene_290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAATCGAAATGCATCAAA	NA	False	NA	NA	False	NA	NA	NA	39342760	39342962	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_39342800_39343000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036453	chr6	+	119	1	Intergenic	novelGene_291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGCTGAACTAGCTGAATG	7780	False	NA	NA	False	NA	NA	NA	39389178	39389297	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_39389200_39389300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036458	chr6	+	492	4	FSM	ENSMUSG00000002416.14	ENSMUST00000119379.2	455	4	-36	-1	-27	1	multi-exon	FALSE	canonical	3	713	junction_3	851.269770532363	441	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATGTTTCTGATGACAAC	NA	False	NA	31	True	ATTAAA	-40	NA	39569480	39576406	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_39569647_39573384_39573530_39575199_39575300_39576325
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036492	chr6	+	625	7	NNC	ENSMUSG00000029911.15	novel	933	7	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	1029.36805047239	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448381	40457929	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr6_+_40448422_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036523	chr6	-	861	1	Intergenic	novelGene_292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTAGTGTAATTGGATTC	NA	False	NA	-15	True	AGTAAA	-18	NA	47161996	47161135	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_-_47161100_47162000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036538	chr6	-	2463	19	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	63	45	combination_of_known_junctions	TRUE	canonical	3	443	junction_6	133.55213528621	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTGTCCTAGAACATCA	NA	False	NA	-13	True	AATAAA	-24	NA	47571901	47507207	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036560	chr6	+	2674	5	FSM	ENSMUSG00000052763.8	ENSMUST00000009411.9	2801	5	127	0	127	0	multi-exon	FALSE	canonical	3	116	junction_4	25.1445819213603	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACAGGGTGTTTTCTG	NA	False	NA	24	True	AATAAA	-31	NA	47897536	47909573	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_47897684_47903440_47903831_47903953_47904081_47905983_47906065_47907644
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036565	chr6	+	1038	1	ISM	ENSMUSG00000052763.8	ENSMUST00000009411.9	2801	5	11126	0	5296	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACAGGGTGTTTTCTG	NA	False	NA	24	True	AATAAA	-31	NA	47908535	47909573	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_+_47908500_47909600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036599	chr6	-	968	1	Genic_Genomic	ENSMUSG00000029814.11	novel	NA	NA	NA	NA	8026	5	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTGTAGTATGTTTTCA	NA	False	NA	-19	True	AATAAA	-20	NA	49063119	49062151	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr6_-_49062200_49063100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036670	chr6	-	1602	12	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2681.25925146259	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446825	51438100	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr6_-_51438414_51438962_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036697	chr6	-	1627	11	NIC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	874	junction_10	2893.40520667258	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446825	51439739	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036716	chr6	+	1813	6	FSM	ENSMUSG00000029836.16	ENSMUST00000031862.14	1889	6	84	-8	-49	8	multi-exon	FALSE	canonical	3	882	junction_5	643.207773584866	478	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTTGTCATTGTCTG	NA	False	NA	7	True	AATAAA	-27	NA	51447593	51460692	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036721	chr6	+	2454	7	FSM	ENSMUSG00000038301.16	ENSMUST00000049152.15	2480	7	26	0	26	0	multi-exon	FALSE	canonical	3	298	junction_5	39.9433626804532	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTCGATTTCTTACTT	NA	False	NA	NA	False	ATTAAA	-24	NA	51500906	51567659	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_51501015_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036754	chr6	+	1375	12	ISM	ENSMUSG00000005225.16	ENSMUST00000101385.3	1838	14	12149	-1	12149	1	3prime_fragment	FALSE	canonical	1	70	junction_1	63.1207684122958	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGCCCTAGTTAATTTC	NA	False	NA	NA	False	AATAAA	-16	NA	54592280	54618019	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_+_54592356_54593617_54593743_54596178_54596338_54597256_54597298_54599105_54599264_54601059_54601217_54601537_54601624_54605830_54605890_54606804_54606936_54607488_54607560_54612694_54612757_54617768
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036758	chr6	+	218	1	Intergenic	novelGene_293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCTTTGTGGGATGAAT	NA	False	NA	NA	False	NA	NA	NA	54696194	54696412	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_54696200_54696400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036768	chr6	-	897	4	FSM	ENSMUSG00000002797.10	ENSMUST00000131475.2	3960	4	-2	3065	-2	3	multi-exon	FALSE	canonical	3	101	junction_2	27.1947707391615	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCGTGGGTTCTCCTGTG	2698	False	NA	1	True	ATTAAA	-35	NA	54969937	54962629	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_54962987_54963817_54963954_54966396_54966543_54969679
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036800	chr6	+	372	1	Genic_Genomic	ENSMUSG00000062190.13	novel	NA	NA	NA	NA	35984	3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGGAGTCTTAATATTT	8624	False	NA	11	True	AATAAA	-21	NA	57716055	57716427	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr6_+_57716100_57716400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036803	chr6	+	483	1	FSM	ENSMUSG00000071419.8	ENSMUST00000121788.2	438	1	-12	-33	-12	33	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGGGGGGGGGAAGAAG	NA	False	NA	13	True	AATAAA	-20	NA	57994478	57994961	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_57994500_57995000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036808	chr6	+	2166	16	FSM	ENSMUSG00000029802.14	ENSMUST00000114294.8	2178	16	-48	60	-30	-60	multi-exon	FALSE	canonical	3	106	junction_1	24.9849732617205	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTTCTTTTCTTCAC	NA	False	NA	16	True	ATTAAA	-23	NA	58617500	58669436	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036816	chr6	+	1296	1	ISM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	1868	0	1868	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGATGACTTTTTCTGAA	NA	False	NA	9	True	NA	NA	NA	59187722	59189018	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_+_59187700_59189000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036839	chr6	-	504	1	FSM	ENSMUSG00000107176.2	ENSMUST00000202370.2	423	1	-27	-54	-27	54	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGCCTACAGAACTCCA	NA	False	NA	-6	True	ATTAAA	-21	NA	66852754	66852250	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_66852200_66852800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036877	chr6	-	693	1	ISM	ENSMUSG00000053604.6	ENSMUST00000066134.6	1829	9	25820	0	7280	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGTCTTCTCTGCCGA	615	False	NA	-5	True	AATAAA	-20	NA	70743396	70742703	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_-_70742700_70743400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036883	chr6	+	479	1	FSM	ENSMUSG00000068396.10	ENSMUST00000121998.2	354	1	-33	-92	-33	92	mono-exon	FALSE	NA	NA	NA	NA	NA	3903	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTCCAGAACAATGAAAGAG	NA	False	NA	NA	False	NA	NA	NA	71101560	71102039	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_71101600_71102000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036922	chr6	-	2544	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	140	junction_10	186.019177230523	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3036	False	NA	-1	True	AATAAA	-28	NA	71885746	71857621	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036923	chr6	-	2599	24	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	3	774	junction_16	87.5050309112717	150	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3032	False	NA	-1	True	AATAAA	-28	NA	71885750	71857621	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036946	chr6	-	1387	5	NNC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_1	389.700205286063	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	TATAAA	-15	NA	72339376	72336696	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr6_-_72337618_72337857_72337933_72338099_72338210_72338394_72338523_72339223
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036950	chr6	-	1379	5	NIC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_4	391.378652969219	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8428	False	NA	NA	False	TATAAA	-15	NA	72339395	72336696	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339258
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036957	chr6	-	1627	4	NIC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	875	junction_1	75.1546553596131	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	TATAAA	-15	NA	72339376	72336696	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_72337933_72338099_72338210_72338394_72338523_72339223
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036970	chr6	-	3392	8	FSM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	-2	-3	0	3	multi-exon	FALSE	canonical	3	761	junction_3	40.6724095420862	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTATTACTTGTCCA	NA	False	NA	-8	True	AATAAA	-20	NA	72416541	72409778	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000036988	chr6	-	717	2	ISM	ENSMUSG00000055239.11	ENSMUST00000204598.3	1743	7	50973	-60	1094	60	3prime_fragment	FALSE	canonical	3	1196	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTGCATGAGGTTTTTTG	NA	False	NA	-24	True	AATAAA	-24	NA	72825302	72819491	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_-_72820114_72825207
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037005	chr6	+	127	2	Intergenic	novelGene_294	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTCTTAGACTGACTTA	NA	False	NA	NA	False	NA	NA	NA	75271034	75273084	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_75271076_75272998
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037016	chr6	-	637	4	NIC	ENSMUSG00000030042.16	novel	457	4	NA	NA	-5	111	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	385.203842140755	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTTTTTCTTTTTCTT	NA	False	NA	-13	True	NA	NA	NA	82629856	82595861	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_82596120_82628417_82628460_82629063_82629149_82629604
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037028	chr6	-	935	4	NNC	ENSMUSG00000030042.16	novel	1769	4	NA	NA	16614	35	at_least_one_novel_splicesite	FALSE	canonical	3	78	junction_3	429.604727886254	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGTGTGTTGCTCAGTG	NA	False	NA	-1	True	NA	NA	NA	82665732	82624261	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr6_-_82625018_82628417_82628460_82629063_82629149_82665680
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037029	chr6	-	1069	4	NIC	ENSMUSG00000030042.16	novel	1769	4	NA	NA	-3	35	combination_of_known_junctions	FALSE	canonical	3	146	junction_3	397.998604129322	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGTGTGTTGCTCAGTG	6106	False	NA	-1	True	NA	NA	NA	82682349	82624261	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_82625018_82628417_82628460_82629063_82629149_82682163
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037047	chr6	-	353	1	ISM	ENSMUSG00000068335.7	ENSMUST00000089651.6	1807	5	2185	0	1275	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCTGCGTATGAATGAG	NA	False	NA	-4	True	ATTAAA	-19	NA	83008267	83007914	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_-_83007900_83008300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037050	chr6	-	1725	5	NIC	ENSMUSG00000068335.7	novel	1807	5	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	11.7686022959398	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCTGCGTATGAATGAG	NA	False	NA	-4	True	ATTAAA	-19	NA	83010444	83007914	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_83009042_83009285_83009397_83009515_83009610_83009747_83010048_83010351
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037055	chr6	-	1802	8	FSM	ENSMUSG00000068329.13	ENSMUST00000089645.13	1725	8	-77	0	-77	0	multi-exon	FALSE	canonical	3	429	junction_7	63.5991913695225	395	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	1820	False	NA	2	True	AATAAA	-31	NA	83031629	83028246	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037071	chr6	+	174	1	FSM	ENSMUSG00000068328.11	ENSMUST00000204752.2	456	1	288	-6	288	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	269	False	NA	9	True	ATTAAA	-19	NA	83034489	83034663	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_83034500_83034700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037080	chr6	+	918	9	FSM	ENSMUSG00000069678.11	ENSMUST00000165164.9	918	9	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	14.5408906192159	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCATCTTCCTTCTTAC	106	False	NA	24	True	AATAAA	-16	NA	83055326	83057836	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037087	chr6	+	662	3	NNC	ENSMUSG00000030037.10	novel	695	3	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	381	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7425	False	NA	NA	False	ATTAAA	-19	NA	83086062	83086920	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr6_+_83086185_83086294_83086417_83086502
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037135	chr6	-	1399	8	NNC	ENSMUSG00000005667.9	novel	1421	9	NA	NA	426	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_7	880.556062719369	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGCCGTTTTAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	83294109	83283383	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83293906
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037141	chr6	+	2395	1	ISM	ENSMUSG00000043131.15	ENSMUST00000055261.11	4412	6	15286	80	14942	-79	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTTTGAAGTGTGTTAAC	1025	False	NA	18	True	AATAAA	-19	NA	83318283	83320678	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_+_83318300_83320700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037146	chr6	+	254	1	NIC	ENSMUSG00000045160.15	novel	554	4	NA	NA	4830	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTGCCATGCTTCAGG	7378	False	NA	26	True	ATTAAA	-26	NA	83335124	83335378	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_+_83335100_83335400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037168	chr6	-	1658	1	Genic_Genomic	ENSMUSG00000014748.14	novel	NA	NA	NA	NA	1934	1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTGTAGTGTGTGACCA	NA	False	NA	-3	True	NA	NA	NA	83747523	83745865	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr6_-_83745900_83747500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037183	chr6	-	3329	5	FSM	ENSMUSG00000045896.15	ENSMUST00000058383.9	3982	5	-4	657	-4	-657	multi-exon	FALSE	canonical	3	74	junction_4	4.71036092035419	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCCAGGTTATTGTTA	NA	False	NA	NA	False	AATAAA	-22	NA	83808727	83783039	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_83785875_83786880_83787058_83791703_83791852_83808252_83808311_83808616
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037213	chr6	+	427	1	Genic_Genomic	ENSMUSG00000030007.9	novel	NA	NA	NA	NA	5898	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1187	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCTCTGCTGTGATGGC	3321	False	NA	17	True	AGTAAA	-19	NA	85445031	85445458	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr6_+_85445000_85445500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037216	chr6	+	1544	1	FSM	ENSMUSG00000040078.10	ENSMUST00000160012.2	480	1	-118	-946	-118	946	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGAGAGGGGGAGGGGGG	NA	False	NA	NA	False	NA	NA	NA	85820843	85822387	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_85820800_85822400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037234	chr6	+	317	1	FSM	ENSMUSG00000072940.6	ENSMUST00000119024.2	210	1	-22	-85	-22	85	mono-exon	FALSE	NA	NA	NA	NA	NA	1177	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGTAAATACACGTTACT	NA	False	NA	NA	False	AATAAA	-21	NA	86310990	86311307	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_86311000_86311300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037236	chr6	+	1649	3	FSM	ENSMUSG00000057497.9	ENSMUST00000071492.9	1643	3	0	-6	0	6	multi-exon	FALSE	canonical	3	1740	junction_2	62	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATGGGTAGTGATATAT	8617	False	NA	38	True	AATAAA	-22	NA	86342627	86347046	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_86342802_86343591_86343733_86345712
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037244	chr6	+	480	4	FSM	ENSMUSG00000057278.9	ENSMUST00000204768.2	375	4	-57	-48	5	-1	multi-exon	FALSE	canonical	0	0	junction_1	1594.61865869764	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCGTTTCTGCTGTTGTGG	NA	False	NA	28	True	AATAAA	-19	NA	86348528	86355888	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_86348687_86352658_86352682_86353476_86353602_86355714
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037265	chr6	+	596	5	FSM	ENSMUSG00000097048.8	ENSMUST00000204047.3	594	5	-2	0	-2	0	multi-exon	FALSE	canonical	3	43	junction_1	30.036436206714	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTATTTTTAAATTTA	NA	False	NA	9	True	NA	NA	NA	86504298	86541431	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_86504416_86504872_86504957_86509174_86509290_86540413_86540520_86541257
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037288	chr6	+	1178	9	NNC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	921.93755719951	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTCCTCTCACGAATT	NA	False	NA	27	True	AATAAA	-33	NA	86986214	87005445	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr6_+_86986353_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037309	chr6	-	1638	11	FSM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	21	4178	21	3061	multi-exon	FALSE	canonical	3	216	junction_5	30.4276190327143	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTGCCTAGAGCTTGT	NA	False	NA	NA	False	ATTAAA	-22	NA	87815759	87795428	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037364	chr6	+	181	1	Intergenic	novelGene_295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAATACTAGATGGAG	NA	False	NA	NA	False	NA	NA	NA	88327545	88327726	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_88327500_88327700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037424	chr6	+	201	1	Intergenic	novelGene_296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCTTGGCTGAGGTCAG	NA	False	NA	NA	False	NA	NA	NA	91664247	91664448	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_91664200_91664400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037430	chr6	-	1942	4	FSM	ENSMUSG00000014551.9	ENSMUST00000140438.2	6073	4	-14	4145	-14	1168	multi-exon	FALSE	canonical	3	811	junction_2	13.9124245031395	444	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTCCTGACCCTTGTT	NA	False	NA	1	True	AATAAA	-36	NA	92161028	92150650	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_92152190_92152689_92152778_92155690_92155798_92160820
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037445	chr6	+	222	1	Intergenic	novelGene_297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGGGATCGGCTTATAC	NA	False	NA	NA	False	NA	NA	NA	93529364	93529586	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_93529400_93529600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037456	chr6	-	961	1	ISM	ENSMUSG00000061838.8	ENSMUST00000204224.3	3367	11	243694	1137	168903	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGCCTCACAGTTCTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	95452087	95451126	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_-_95451100_95452100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037477	chr6	+	218	1	Intergenic	novelGene_298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTAATCCTGCGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	98890505	98890723	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_98890500_98890700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037485	chr6	-	480	1	ISM	ENSMUSG00000035378.18	ENSMUST00000113312.9	6816	11	97597	4825	97573	1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGGTGTAAATAATTAGAA	NA	False	NA	-1	True	AATAAA	-19	NA	100550521	100550041	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_-_100550000_100550500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037491	chr6	+	1756	1	FSM	ENSMUSG00000052144.9	ENSMUST00000203067.2	598	1	129	-1287	129	388	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGAGTACATTTTTATC	4060	False	NA	23	True	AATAAA	-17	NA	100843215	100844971	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_100843200_100845000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037492	chr6	+	2248	9	FSM	ENSMUSG00000013736.17	ENSMUST00000113248.4	1398	9	-30	-820	-5	0	multi-exon	FALSE	canonical	3	228	junction_1	232.818296907696	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTCGTTATTTCTGT	NA	False	NA	12	True	AATAAA	-21	NA	106746096	106759435	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_106746153_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037496	chr6	+	2289	9	FSM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	-6	0	-6	0	multi-exon	FALSE	canonical	3	574	junction_1	132.149477392081	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTCGTTATTTCTGT	NA	False	NA	12	True	AATAAA	-21	NA	106746120	106759435	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_106746218_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037502	chr6	-	2099	11	FSM	ENSMUSG00000005362.15	ENSMUST00000113239.10	2084	11	-15	0	-12	0	multi-exon	FALSE	canonical	3	188	junction_5	22.0871003076456	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTCCTTAATGTCATT	NA	False	NA	-33	True	AATAAA	-17	NA	106777050	106757161	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037516	chr6	-	770	5	NNC	ENSMUSG00000087341.5	novel	544	4	NA	NA	-9174	116	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	14.0779082253011	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGTCTTGTGTCAGTAG	NA	False	NA	-3	True	AATAAA	-18	NA	108600130	108587177	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr6_-_108587583_108589268_108589374_108590092_108590176_108590909_108590955_108599998
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037545	chr6	-	1057	2	FSM	ENSMUSG00000086429.10	ENSMUST00000159544.3	822	2	141	-376	-1	0	multi-exon	FALSE	canonical	3	30	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGAATGACTTTTTAAT	NA	False	NA	0	True	NA	NA	NA	113054153	113047358	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_113048397_113054134
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037573	chr6	+	1480	6	FSM	ENSMUSG00000079426.14	ENSMUST00000156898.5	2270	6	-1	791	-1	5	multi-exon	FALSE	canonical	3	688	junction_1	248.294985853521	332	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTCTGTGTGGGTGTGT	NA	False	NA	43	True	ATTAAA	-35	NA	113355074	113366618	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037604	chr6	+	763	5	FSM	ENSMUSG00000034023.17	ENSMUST00000101051.5	2142	5	-8	1387	-8	-504	multi-exon	FALSE	canonical	3	329	junction_3	30.62984655528	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTGTCTGCCTGTCTA	NA	False	NA	NA	False	NA	NA	NA	113508656	113514293	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037612	chr6	+	2752	3	FSM	ENSMUSG00000033933.14	ENSMUST00000035673.8	2792	3	40	0	40	0	multi-exon	FALSE	canonical	3	134	junction_1	12	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGTGTTGTGTTACCT	198	False	NA	19	True	AATAAA	-19	NA	113600959	113608594	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_113601340_113605052_113605176_113606345
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037625	chr6	+	2400	20	NIC	ENSMUSG00000030314.17	novel	2543	21	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	29.4466041008941	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCTCAGGTCCTTCC	NA	False	NA	6	True	NA	NA	NA	114620081	114836185	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_+_114620112_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037629	chr6	+	2545	21	FSM	ENSMUSG00000030314.17	ENSMUST00000182902.8	2543	21	-2	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	41.8782759912583	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCTCAGGTCCTTCC	NA	False	NA	6	True	NA	NA	NA	114620087	114836185	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_114620112_114648062_114648214_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037681	chr6	+	890	1	FSM	ENSMUSG00000101878.2	ENSMUST00000173192.2	387	1	-109	-394	-109	394	mono-exon	FALSE	NA	NA	NA	NA	NA	947	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAAACACCAAATGCACTA	NA	False	NA	NA	False	AATAAA	-35	NA	116150588	116151478	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_116150600_116151500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037700	chr6	+	2230	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	-74	-9	-69	6	multi-exon	TRUE	canonical	3	2150	junction_1	1335.10981654028	1749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTTATGTACTCAGCAAA	3660	False	NA	NA	False	AATAAA	-23	NA	117883681	117902589	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037720	chr6	+	2289	3	FSM	ENSMUSG00000042079.14	ENSMUST00000180020.8	2280	3	-7	-2	-7	1	multi-exon	FALSE	canonical	3	4878	junction_1	99	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCACAGCTTATGTACTCA	NA	False	NA	NA	False	AATAAA	-18	NA	117894247	117902584	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_117894560_117896059_117896121_117900668
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037725	chr6	-	551	9	FSM	ENSMUSG00000004988.10	ENSMUST00000204214.3	550	9	0	-1	0	0	multi-exon	FALSE	canonical	1	3	junction_3	4.92442890089805	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTGGTCTTGTGACCC	2519	False	NA	NA	False	ATTAAA	-17	NA	117914296	117910519	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912881_117913698_117913742_117914251
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037729	chr6	-	2170	14	ISM	ENSMUSG00000030138.9	ENSMUST00000032237.8	4345	23	14854	0	14784	0	3prime_fragment	FALSE	canonical	3	339	junction_13	47.6483668545452	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGCCTAGTGATTTATT	NA	False	NA	-1	True	ATTAAA	-16	NA	118381581	118360341	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_-_118360837_118361199_118361362_118365716_118365893_118366199_118366348_118368118_118368242_118369278_118369338_118369504_118369686_118369763_118369953_118373087_118373268_118373723_118373798_118375034_118375117_118380049_118380208_118381216_118381319_118381540
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037756	chr6	-	1932	8	FSM	ENSMUSG00000058979.8	ENSMUST00000075303.7	1928	8	-4	0	-4	0	multi-exon	FALSE	canonical	3	207	junction_3	16.3245151817249	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTCTTGTGAGGATT	NA	False	NA	35	True	ATTAAA	-21	NA	120508284	120486454	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_120487424_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037760	chr6	-	992	7	NNC	ENSMUSG00000058979.8	novel	1882	3	NA	NA	-1	-3354	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	80.8386596183341	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTGTTGTTGTTGTAA	NA	False	NA	NA	False	AAAAAG	-10	NA	120508281	120489808	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr6_-_120490030_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037763	chr6	-	227	1	Intergenic	novelGene_299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTTCCGTCTGCTAAGC	NA	False	NA	NA	False	AATAAA	-23	NA	120624727	120624500	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_-_120624500_120624700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037770	chr6	+	3119	7	FSM	ENSMUSG00000009112.5	ENSMUST00000009256.4	6925	7	-26	3832	0	-3832	multi-exon	FALSE	canonical	3	188	junction_2	15.192286054296	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTGATGTTTTGAATGTC	NA	False	NA	17	True	AATAAA	-28	NA	120813172	120865971	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_120813319_120825416_120825578_120839815_120839924_120842528_120842686_120847726_120847797_120853163_120853308_120863638
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037780	chr6	-	170	1	NIC	ENSMUSG00000004446.13	novel	2415	7	NA	NA	4280	-265	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGGAGAGCTGTATCT	NA	False	NA	-26	True	AATAAA	-16	NA	120870249	120870079	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_120870100_120870200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037797	chr6	+	691	1	NIC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	4381	-2719	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTCCTAGTGCGATGGT	7324	False	NA	15	True	AATAAA	-19	NA	122290338	122291029	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_+_122290300_122291000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037804	chr6	+	563	1	FSM	ENSMUSG00000055093.11	ENSMUST00000119780.2	471	1	-43	-49	-43	49	mono-exon	FALSE	NA	NA	NA	NA	NA	12994	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGCTTCACAATGCAGGA	NA	False	NA	5	True	AATAAA	-31	NA	122433819	122434382	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_122433800_122434400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037835	chr6	+	2183	4	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	25	0	intron_retention	FALSE	canonical	3	354	junction_3	1978.73567938947	77	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684551	122691592	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690103
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037841	chr6	+	932	1	ISM	ENSMUSG00000012396.13	ENSMUST00000112581.8	1995	5	6213	0	6134	0	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122690660	122691592	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_+_122690700_122691600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037845	chr6	-	1570	1	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	13352	15	3783	2	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	NA	False	NA	-19	True	AATAAA	-14	NA	122706352	122704782	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_-_122704800_122706400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037858	chr6	+	970	1	Genic_Genomic	ENSMUSG00000030327.9	novel	NA	NA	NA	NA	13393	2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTCATCTTTTAGT	NA	False	NA	11	True	ATTAAA	-17	NA	122864932	122865902	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr6_+_122864900_122865900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037866	chr6	+	145	1	Intergenic	novelGene_300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATTGTGTTATTTGTTGA	NA	False	NA	14	True	NA	NA	NA	124451819	124451964	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_124451800_124452000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037880	chr6	-	1309	5	NIC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	-14	0	intron_retention	FALSE	canonical	3	1245	junction_4	117.50957407803	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTCAGACCTGATT	NA	False	NA	-14	True	TATAAA	-19	NA	124689118	124681343	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_124681622_124681901_124682052_124682120_124682620_124682703_124682806_124688838
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037890	chr6	+	500	3	FSM	ENSMUSG00000004264.18	ENSMUST00000143000.8	734	3	234	0	219	0	multi-exon	FALSE	canonical	0	0	junction_2	1299	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124692544	124693913	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_124692623_124692916_124692994_124693568
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037894	chr6	+	260	1	ISM	ENSMUSG00000004264.18	ENSMUST00000004375.16	1318	10	4355	0	1328	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124693653	124693913	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_+_124693700_124693900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037923	chr6	+	1494	6	FSM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	482	0	-47	0	multi-exon	FALSE	canonical	0	0	junction_3	347.474660946665	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGTCTTGTCTTGCCT	1297	False	NA	39	True	NA	NA	NA	124807132	124810664	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037936	chr6	+	1159	6	NIC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	7	-251	intron_retention	FALSE	canonical	0	0	junction_3	431.365552634885	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTTTAAGAAGTTAGAGCA	1351	False	NA	32	True	ATTAAA	-19	NA	124807186	124810244	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_+_124807237_124807326_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000037955	chr6	+	1546	9	FSM	ENSMUSG00000030120.15	ENSMUST00000032214.14	1451	9	-90	-5	0	4	multi-exon	FALSE	canonical	3	152	junction_8	1260.71298651795	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTGGCTGTACTTTTGC	NA	False	NA	31	True	AATAAA	-21	NA	124908348	124913112	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912564
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038000	chr6	+	1630	8	FSM	ENSMUSG00000030330.16	ENSMUST00000032480.14	1629	8	0	-1	0	0	multi-exon	FALSE	canonical	3	91	junction_4	19.3527933964298	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7107	False	NA	7	True	AATAAA	-17	NA	125016798	125026228	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038014	chr6	+	203	1	Intergenic	novelGene_301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAGCAAAACCAGTAGACC	3758	False	NA	NA	False	NA	NA	NA	125043602	125043805	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_125043600_125043800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038030	chr6	-	1250	6	NIC	ENSMUSG00000057666.19	novel	1273	7	NA	NA	-27	1	combination_of_known_junctions	FALSE	canonical	3	832	junction_5	4068.19726168729	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCTTGGTTTTAATGCG	NA	False	NA	-14	True	AATAAA	-16	NA	125141906	125138814	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125141815
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038031	chr6	-	1472	5	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	1	intron_retention	FALSE	canonical	3	6089	junction_1	1441.13000367767	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCTTGGTTTTAATGCG	NA	False	NA	-14	True	AATAAA	-16	NA	125142568	125138814	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_125139065_125139174_125140004_125140101_125140400_125142233_125142275_125142514
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038032	chr6	-	1370	7	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	2	245	junction_5	3903.40606251629	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCTTGGTTTTAATGCG	NA	False	NA	-14	True	AATAAA	-16	NA	125142568	125138814	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142117_125142275_125142514
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038033	chr6	-	1338	6	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	1	intron_retention	FALSE	canonical	3	6089	junction_1	1950.20942465162	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCTTGGTTTTAATGCG	NA	False	NA	-14	True	AATAAA	-16	NA	125142568	125138814	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_125139065_125139174_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038034	chr6	-	1388	6	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	1	intron_retention	FALSE	canonical	3	6089	junction_1	1692.66445582106	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCTTGGTTTTAATGCG	NA	False	NA	-14	True	AATAAA	-16	NA	125142568	125138814	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_125139065_125139174_125139357_125139440_125140004_125140101_125140400_125142233_125142275_125142514
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038041	chr6	-	1321	7	NNC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_6	4043.00748893142	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCTTGGTTTTAATGCG	NA	False	NA	-14	True	AATAAA	-16	NA	125142568	125138814	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142447
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038070	chr6	+	183	1	Intergenic	novelGene_302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGGAGGGAGATTGCAAA	NA	False	NA	34	True	NA	NA	NA	125389666	125389849	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_125389700_125389800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038078	chr6	+	190	1	Intergenic	novelGene_303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTATTTGTATCCATATG	759	False	NA	NA	False	NA	NA	NA	125433537	125433727	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_125433500_125433700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038085	chr6	-	227	1	ISM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	34299	0	2532	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	NA	False	NA	-10	True	AATAAA	-15	NA	125437455	125437228	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_-_125437200_125437500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038119	chr6	-	1517	3	FSM	ENSMUSG00000048668.17	ENSMUST00000112151.2	1108	3	-43	-366	0	1	multi-exon	FALSE	canonical	3	139	junction_2	100.5	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTGTCTCAGTGGTCC	431	False	NA	NA	False	CATAAA	-35	NA	128339874	128333961	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_128335157_128336068_128336318_128339801
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038129	chr6	-	190	1	Intergenic	novelGene_304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTTATTTTTTAAAAAG	NA	False	NA	-1	True	AATACA	-7	NA	128365593	128365403	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_-_128365400_128365600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038130	chr6	-	2310	12	FSM	ENSMUSG00000001518.13	ENSMUST00000001559.11	2320	12	10	0	-3	0	multi-exon	FALSE	canonical	3	237	junction_3	19.6628609101919	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCTCTCCAATCTGGAC	NA	False	NA	0	True	AATAAA	-24	NA	128401884	128386406	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038143	chr6	+	1653	1	FSM	ENSMUSG00000037827.6	ENSMUST00000036712.6	1479	1	-74	-100	-74	100	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTTCTCTTCTCCCAG	NA	False	NA	NA	False	ATTAAA	-23	NA	128621801	128623454	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_128621800_128623500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038170	chr6	+	197	1	Intergenic	novelGene_305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCAGAGCCCGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	134571184	134571381	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_134571200_134571400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038179	chr6	+	191	1	Intergenic	novelGene_306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGGGCCGGGCGTGGTG	NA	False	NA	NA	False	NA	NA	NA	134752834	134753025	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_134752800_134753000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038204	chr6	+	2097	4	FSM	ENSMUSG00000046733.8	ENSMUST00000050104.8	2083	4	-14	0	-14	0	multi-exon	FALSE	canonical	3	121	junction_1	5.71547606649408	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATTTATTTATTT	NA	False	NA	32	True	AATAAA	-32	NA	135042634	135061707	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_135042774_135055543_135056483_135060440_135060497_135060744
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038209	chr6	-	295	1	Genic_Genomic	ENSMUSG00000042770.9	novel	NA	NA	NA	NA	30322	3	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGTTTTAAATTATTTCC	3435	False	NA	-26	True	AATACA	-23	NA	135114811	135114516	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr6_-_135114500_135114800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038216	chr6	+	2638	5	FSM	ENSMUSG00000030208.16	ENSMUST00000032330.16	2721	5	83	0	6	0	multi-exon	FALSE	canonical	3	40	junction_2	1.6393596310755	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGACTGTTTTCTT	NA	False	NA	7	True	TATAAA	-20	NA	135340011	135360171	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_135340101_135354175_135354287_135356898_135356996_135357098_135357240_135357971
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038230	chr6	-	2677	12	FSM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	62	0	-28	0	multi-exon	FALSE	canonical	3	1089	junction_11	207.479880534104	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGTGTTTGTGTAATG	2894	False	NA	-1	True	AATAAA	-19	NA	136805169	136790651	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805017
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038256	chr6	+	2818	5	FSM	ENSMUSG00000030245.11	ENSMUST00000032372.7	2818	5	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_3	45.9911676303179	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGTCAAGTTTATCTT	NA	False	NA	25	True	AATAAA	-19	NA	142332946	142349584	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_142333096_142338055_142338148_142339653_142339833_142341913_142341996_142347268
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038275	chr6	-	526	2	Intergenic	novelGene_307	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGACTTTTATTTTTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	144930094	144907254	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_-_144907643_144929956
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038283	chr6	-	2478	11	NIC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	9	5	combination_of_known_junctions	FALSE	canonical	3	210	junction_10	1167.49801284627	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	NA	False	NA	-19	True	AATAAA	-21	NA	144993378	144944878	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144993165
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038301	chr6	-	1521	3	ISM	ENSMUSG00000030265.15	ENSMUST00000032399.12	4678	5	15888	2769	-3527	512	3prime_fragment	FALSE	canonical	3	862	junction_1	24.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTCGCTTCAAGGTTGA	NA	False	NA	-1	True	AATAAA	-18	NA	145180077	145165193	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_-_145166451_145177820_145177981_145179973
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038310	chr6	+	144	1	ISM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	5579	0	5579	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGCTTCCCTGTGTGCT	NA	False	NA	16	True	AATAAA	-36	NA	145567061	145567205	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_+_145567100_145567200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038326	chr6	-	1546	1	ISM	ENSMUSG00000040234.17	ENSMUST00000037709.16	3241	12	30699	1	30600	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAATGTCCTCCTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	146505396	146503850	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr6_-_146503800_146505400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038332	chr6	+	785	4	FSM	ENSMUSG00000030291.13	ENSMUST00000032429.9	814	4	29	0	-3	0	multi-exon	FALSE	canonical	3	254	junction_3	35.4902177445498	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTTGTTTGTCCTT	NA	False	NA	36	True	AATAAA	-21	NA	146544073	146552100	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_+_146544151_146549662_146549778_146550647_146550749_146551608
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038368	chr6	-	2683	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	-8	22	-8	0	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	148847973	148822554	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038374	chr6	+	235	1	Intergenic	novelGene_308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTTTTTTCCAGCCAGC	NA	False	NA	NA	False	NA	NA	NA	148849655	148849890	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_148849700_148849900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038378	chr6	+	192	1	Intergenic	novelGene_309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTCATGATTGGAGAGAT	6999	False	NA	NA	False	NA	NA	NA	148999717	148999909	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_148999700_148999900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038390	chr6	+	185	1	Intergenic	novelGene_310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATTTATTATATTTAC	NA	False	NA	NA	False	NA	NA	NA	149303757	149303942	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr6_+_149303800_149303900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038395	chr7	+	199	1	Intergenic	novelGene_311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTGGCTGCTCTTCCA	3123	False	NA	NA	False	NA	NA	NA	3210215	3210414	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_3210200_3210400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038397	chr7	+	906	1	FSM	ENSMUSG00000107470.3	ENSMUST00000203929.3	795	1	-26	-85	-26	85	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGATTAAAATTTTTTTTT	10001	False	NA	NA	False	AATAAA	-30	NA	3230815	3231721	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_3230800_3231700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038429	chr7	+	641	2	ISM	ENSMUSG00000035674.14	ENSMUST00000108644.8	351	4	-6	1899	0	510	5prime_fragment	FALSE	canonical	3	2080	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	262	False	NA	NA	False	NA	NA	NA	3620378	3621228	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_3620407_3620615
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038457	chr7	-	2341	8	FSM	ENSMUSG00000035596.15	ENSMUST00000038608.14	2878	8	537	0	0	0	multi-exon	FALSE	canonical	3	178	junction_4	25.6960252623964	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGTGAGTATAACTG	7930	False	NA	-2	True	AATAAA	-15	NA	3695985	3680787	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_3681849_3686807_3686985_3688672_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038495	chr7	+	1349	5	FSM	ENSMUSG00000006333.15	ENSMUST00000108623.8	1347	5	0	-2	0	0	multi-exon	FALSE	canonical	3	206	junction_4	5925.24712564801	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1309	False	NA	3	True	AATAAA	-18	NA	3707036	3709896	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709006
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038496	chr7	+	583	4	NIC	ENSMUSG00000006333.15	novel	751	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	288	junction_2	6025.82189875834	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1309	False	NA	3	True	AATAAA	-18	NA	3707036	3709896	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_+_3707064_3707325_3707448_3708731_3708919_3709649
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038514	chr7	+	253	1	Genic_Genomic	ENSMUSG00000006333.15	novel	NA	NA	NA	NA	1033	4	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTGCCTCTGTAGTGA	3920	False	NA	7	True	AATAAA	-22	NA	3709647	3709900	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr7_+_3709600_3709900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038529	chr7	-	190	1	ISM	ENSMUSG00000055809.8	ENSMUST00000094897.5	2224	12	9310	21	9310	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTGTGTCCTGTCCTC	6302	False	NA	-20	True	AATAAA	-14	NA	4526142	4525952	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_4526000_4526100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038534	chr7	-	1514	8	FSM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	85	-6	-2	6	multi-exon	FALSE	canonical	3	115	junction_7	148.934720667842	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTTGCATTGTTTTT	NA	False	NA	-1	True	AATAAA	-22	NA	4687982	4663513	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687569_4687892
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038536	chr7	-	1436	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	2	6	combination_of_known_junctions	FALSE	canonical	3	78	junction_7	161.654708864169	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTTGCATTGTTTTT	NA	False	NA	-1	True	AATAAA	-22	NA	4687991	4663513	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687482_4687892
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038548	chr7	-	497	4	FSM	ENSMUSG00000051811.15	ENSMUST00000063324.14	553	4	65	-9	-6	9	multi-exon	FALSE	canonical	3	648	junction_1	73.0677007226099	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTCGTTTTGTTTCCT	NA	False	NA	0	True	AATAAA	-26	NA	4756028	4754781	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_4754975_4755059_4755161_4755722_4755849_4755951
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038563	chr7	-	572	3	FSM	ENSMUSG00000051811.15	ENSMUST00000182173.2	391	3	-24	-157	-3	2	multi-exon	FALSE	canonical	3	803	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTCTTTTCTCGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	4756025	4754788	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_4755161_4755722_4755849_4755951
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038566	chr7	-	1237	1	Genic_Genomic	ENSMUSG00000051811.15	novel	NA	NA	NA	NA	-3	2	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTCTTTTCTCGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	4756025	4754788	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr7_-_4754800_4756000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038585	chr7	-	1132	2	NIC	ENSMUSG00000051811.15	novel	553	4	NA	NA	-3	0	intron_retention	FALSE	canonical	3	803	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756025	4754790	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_4755849_4755951
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038594	chr7	+	580	5	NNC	ENSMUSG00000030432.13	novel	1106	5	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	2852.82127901486	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGCTCATTGAGCT	2782	False	NA	17	True	AATAAA	-32	NA	4795961	4797561	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_+_4795998_4796252_4796409_4796501_4796626_4797062_4797182_4797416
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038596	chr7	+	1258	3	NIC	ENSMUSG00000030432.13	novel	772	4	NA	NA	-27	-14	intron_retention	FALSE	canonical	3	6459	junction_1	95	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGCCTCCAAAATGTTTT	2782	False	NA	3	True	AATAAA	-18	NA	4795961	4797547	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_+_4796409_4796501_4797182_4797416
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038600	chr7	+	1027	3	NIC	ENSMUSG00000030432.13	novel	1106	5	NA	NA	-25	-14	intron_retention	FALSE	canonical	3	3938	junction_1	1355.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGCCTCCAAAATGTTTT	2784	False	NA	3	True	AATAAA	-18	NA	4795963	4797547	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_+_4795998_4796319_4797182_4797416
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038608	chr7	-	1004	4	FSM	ENSMUSG00000060860.9	ENSMUST00000079496.9	1238	4	234	0	-5	0	multi-exon	FALSE	canonical	3	9878	junction_1	292.246851518066	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTATGCCTGAAGTGTC	NA	False	NA	-25	True	AATAAA	-15	NA	4815355	4811012	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_4811484_4813420_4813612_4814407_4814556_4815161
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038631	chr7	+	2145	12	FSM	ENSMUSG00000030435.17	ENSMUST00000005041.15	2183	12	45	-7	45	7	multi-exon	FALSE	canonical	3	1559	junction_7	130.155406157663	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTGTGTCCAGTGTGTC	117	False	NA	40	True	ATTAAA	-30	NA	5065186	5082944	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038653	chr7	+	198	1	Intergenic	novelGene_312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAGGAAGATAAAGAAACC	4906	False	NA	NA	False	NA	NA	NA	6177450	6177648	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_6177400_6177600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038656	chr7	+	1974	6	FSM	ENSMUSG00000058028.15	ENSMUST00000072662.12	1980	6	0	6	0	-6	multi-exon	FALSE	canonical	2	4	junction_1	2.49799919935936	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATCTATTCATTGATTGA	3080	False	NA	NA	False	ATTAAA	-16	NA	6225276	6242416	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_6225336_6227584_6227759_6233070_6233538_6234335_6234537_6236813_6236968_6241497
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038684	chr7	-	370	2	Intergenic	novelGene_313	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCCTGCTTCATAACTG	NA	False	NA	NA	False	NA	NA	NA	11168996	11159919	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_-_11160082_11168788
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038689	chr7	-	366	2	Intergenic	novelGene_314	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCCTGCTTCATAACTG	NA	False	NA	NA	False	NA	NA	NA	11285367	11276301	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_-_11276464_11285163
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038707	chr7	+	1263	5	FSM	ENSMUSG00000012848.16	ENSMUST00000139349.3	1248	5	-13	-2	0	0	multi-exon	FALSE	canonical	3	14799	junction_4	1606.02496478106	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	38	True	AATAAA	-24	NA	12656244	12660613	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12660422_12660498
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038709	chr7	+	695	6	NNC	ENSMUSG00000012848.16	novel	761	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_3	6942.55032678914	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	38	True	AATAAA	-24	NA	12656244	12660613	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_+_12656316_12656899_12657009_12659318_12659529_12659701_12659793_12660322_12660422_12660498
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038763	chr7	-	1354	3	FSM	ENSMUSG00000041583.9	ENSMUST00000108513.5	1344	3	-13	3	-13	-3	multi-exon	FALSE	canonical	3	46	junction_1	9.5	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTGCCAGTTTTTACC	NA	False	NA	17	True	AATAAA	-33	NA	15573616	15567168	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_15567876_15568304_15568891_15573555
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038797	chr7	+	1649	12	FSM	ENSMUSG00000006021.6	ENSMUST00000006178.5	1630	12	-19	0	-19	0	multi-exon	FALSE	canonical	3	76	junction_5	5.62609034427847	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTTGTCTGGCAAGCA	NA	False	NA	32	True	NA	NA	NA	15853800	15861441	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_15854107_15854414_15854498_15854636_15854722_15854794_15854850_15856959_15857036_15857124_15857199_15857696_15857807_15857879_15857958_15858641_15858718_15859637_15859774_15859861_15860033_15861042
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038805	chr7	-	1935	12	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	100	junction_1	37.3980155923805	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACACCCACCCCACTGTGT	NA	False	NA	-10	True	AATAAA	-18	NA	16020699	16009397	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_16010036_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038817	chr7	-	1967	9	FSM	ENSMUSG00000052833.10	ENSMUST00000094815.5	1875	9	-89	-3	-68	3	multi-exon	FALSE	canonical	3	2941	junction_6	113.453115316416	955	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCTCCTCTGTTTTAG	NA	False	NA	-1	True	AATAAA	-20	NA	16121799	16060971	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038846	chr7	-	1012	1	Genic_Genomic	ENSMUSG00000019370.11	novel	NA	NA	NA	NA	779	4	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGACTCTTCCGTCTGTCCT	7187	False	NA	-10	True	AATAAA	-19	NA	16650311	16649299	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr7_-_16649300_16650300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038860	chr7	-	2254	12	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-21	-12	intron_retention	FALSE	canonical	3	1050	junction_5	58.5383959607102	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATCTCAAACCCACCTC	NA	False	NA	-15	True	AATAAA	-25	NA	16761755	16738576	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038870	chr7	-	1999	14	NIC	ENSMUSG00000074358.10	novel	2022	14	NA	NA	-6	0	combination_of_known_junctions	TRUE	canonical	3	82	junction_7	38.5657050949086	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2771	False	NA	-1	True	AATAAA	-18	NA	18644329	18624807	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038877	chr7	+	207	1	Intergenic	novelGene_315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTCTTCCTCAGCTGAT	NA	False	NA	NA	False	NA	NA	NA	18805911	18806118	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_18805900_18806100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038905	chr7	-	2212	13	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	243	junction_7	341.113250988583	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994604_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038906	chr7	-	1776	11	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	142	junction_8	402.203443545676	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994796_18998450_18998496_18998578_18998751_19005438
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038928	chr7	-	168	1	ISM	ENSMUSG00000057667.8	ENSMUST00000077408.8	3188	2	2396	1318	2396	-1318	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCTTGATTCTAACTATC	NA	False	NA	NA	False	NA	NA	NA	19239896	19239728	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_19239700_19239900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038932	chr7	+	709	5	FSM	ENSMUSG00000002043.18	ENSMUST00000147114.2	719	5	10	0	-6	0	multi-exon	FALSE	canonical	3	104	junction_1	197.958802532244	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	515	False	NA	21	True	AGTAAA	-22	NA	19242644	19250070	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_19242758_19248346_19248465_19248931_19249016_19249128_19249223_19249770
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038950	chr7	-	818	2	FSM	ENSMUSG00000044709.7	ENSMUST00000051364.4	763	2	-52	-3	-10	0	multi-exon	FALSE	canonical	3	225	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCTGTGTGTGTGTGTG	2892	False	NA	-6	True	AATAAA	-22	NA	19307320	19298870	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_19299602_19307233
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038959	chr7	-	463	8	ISM	ENSMUSG00000061028.8	ENSMUST00000207253.2	2018	11	3551	-5	23	0	3prime_fragment	TRUE	canonical	3	161	junction_6	42.7718198283469	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATGCTGTCCCCTTATT	8208	False	NA	-4	True	AATAAA	-26	NA	19319041	19314962	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318708_19318749_19319014
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038985	chr7	-	1183	5	FSM	ENSMUSG00000002985.17	ENSMUST00000172983.8	817	5	-16	-350	-2	2	multi-exon	FALSE	canonical	3	31	junction_4	5193.26072906031	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAGTCTCTGTGAGTGA	NA	False	NA	-28	True	AATAAA	-16	NA	19432979	19430194	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432328_19432399_19432935
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038986	chr7	-	1258	5	NNC	ENSMUSG00000002985.17	novel	817	5	NA	NA	-2	2	intron_retention	FALSE	canonical	3	30	junction_4	5193.51332794092	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAGTCTCTGTGAGTGA	NA	False	NA	-28	True	AATAAA	-16	NA	19432979	19430194	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_19431029_19431403_19431573_19432112_19432179_19432328_19432474_19432935
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000038990	chr7	-	1221	4	NNC	ENSMUSG00000002985.17	novel	1104	4	NA	NA	-3	2	intron_retention	FALSE	canonical	3	62	junction_3	4907.01948459778	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAGTCTCTGTGAGTGA	NA	False	NA	-28	True	AATAAA	-16	NA	19432936	19430194	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_19431029_19431403_19431573_19432112_19432179_19432784
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039023	chr7	+	440	2	NNC	ENSMUSG00000090075.2	novel	338	2	NA	NA	-49	156	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTTGCCTTAATTTTTC	NA	False	NA	NA	False	AATAAA	-37	NA	19654604	19661688	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_+_19654715_19661358
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039027	chr7	-	653	1	FSM	ENSMUSG00000066724.4	ENSMUST00000086013.4	645	1	-1	-7	-1	7	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAGGCTGCTATGAA	NA	False	NA	NA	False	AATAAA	-20	NA	23646716	23646063	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_23646100_23646700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039048	chr7	+	180	1	Intergenic	novelGene_316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACAAGATTGCTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	24239640	24239820	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_24239600_24239800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039071	chr7	+	542	6	NNC	ENSMUSG00000040952.17	novel	593	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_2	9286.31704390928	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584057	24589231	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_+_24584093_24584560_24584632_24584846_24584978_24587706_24587891_24588331_24588387_24589165
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039087	chr7	+	554	6	NIC	ENSMUSG00000040952.17	novel	633	6	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	133	junction_1	10491.1802119685	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584202	24589231	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_+_24584280_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039097	chr7	+	192	1	Intergenic	novelGene_317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCTGACTGCTCTTCCA	NA	False	NA	NA	False	NA	NA	NA	24675400	24675592	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_24675400_24675600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039102	chr7	-	1073	1	ISM	ENSMUSG00000054499.10	ENSMUST00000206750.2	4594	5	15948	2924	15948	1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGGCTCTCCGGTACTT	799	False	NA	-7	True	AATAAA	-28	NA	24903336	24902263	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_24902300_24903300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039121	chr7	-	1693	9	FSM	ENSMUSG00000060376.8	ENSMUST00000071329.8	1899	9	211	-5	211	5	multi-exon	FALSE	canonical	3	232	junction_4	24.6373699895098	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTCGTCTCTGTTTCC	9893	False	NA	-4	True	AGTAAA	-24	NA	25358195	25329365	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_25329859_25330424_25330597_25330766_25330909_25331062_25331270_25332664_25332827_25337586_25337696_25340881_25340969_25341068_25341252_25358057
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039126	chr7	+	1062	6	FSM	ENSMUSG00000061286.8	ENSMUST00000079634.8	1020	6	-41	-1	-41	1	multi-exon	FALSE	canonical	3	1190	junction_2	58.9528625259198	833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGGTGTCTGGAGAGTACT	NA	False	NA	32	True	ATTAAA	-44	NA	25358547	25367458	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_25358809_25362561_25362676_25363751_25363874_25364845_25364987_25365677_25365768_25367124
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039131	chr7	+	1088	7	NNC	ENSMUSG00000061286.8	novel	1020	6	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	577.0184861279	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	31	True	ATTAAA	-43	NA	25358653	25367457	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_+_25358809_25360685_25360819_25362561_25362676_25363751_25363874_25364845_25364987_25365677_25365768_25367124
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039134	chr7	+	113	1	ISM	ENSMUSG00000061286.8	ENSMUST00000079634.8	1020	6	8756	0	3533	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	31	True	ATTAAA	-43	NA	25367344	25367457	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_25367300_25367500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039155	chr7	-	1194	8	FSM	ENSMUSG00000053291.16	ENSMUST00000093040.13	1192	8	-2	0	-2	0	multi-exon	FALSE	canonical	3	670	junction_1	28.7402157263998	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGGCCTCTGTCATTCTG	NA	False	NA	-1	True	CATAAA	-19	NA	26878323	26867848	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26875582_26875664_26878151
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039162	chr7	-	575	4	FSM	ENSMUSG00000089661.10	ENSMUST00000121848.2	572	4	0	-3	0	1	multi-exon	FALSE	canonical	3	138	junction_1	9.2736184954957	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTCTTTGGTTTTTGG	NA	False	NA	1	True	AATACA	-19	NA	26880582	26879165	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_26879260_26879593_26879705_26880124_26880259_26880346
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039166	chr7	-	1303	6	FSM	ENSMUSG00000061479.16	ENSMUST00000163311.9	1288	6	-11	-4	-11	2	multi-exon	FALSE	canonical	3	2141	junction_5	100.882902416614	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTCTGCTTTATTTTC	NA	False	NA	-4	True	ATTAAA	-30	NA	26895196	26886427	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039169	chr7	-	1290	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	50	-4	-42	2	multi-exon	FALSE	canonical	3	597	junction_6	627.600567417065	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTCTGCTTTATTTTC	NA	False	NA	-4	True	ATTAAA	-30	NA	26895620	26886427	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039213	chr7	+	2685	10	FSM	ENSMUSG00000049643.16	ENSMUST00000067386.14	2701	10	16	0	16	0	multi-exon	FALSE	canonical	3	300	junction_8	25.2899238218224	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	412	False	NA	NA	False	AATAAA	-20	NA	27252673	27281524	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039218	chr7	+	199	1	Intergenic	novelGene_318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTGGGCCACAGAATGAG	1179	False	NA	NA	False	NA	NA	NA	27267936	27268135	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_27267900_27268100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039225	chr7	+	3029	14	FSM	ENSMUSG00000004056.16	ENSMUST00000108344.9	4544	14	142	1373	-52	0	multi-exon	FALSE	canonical	3	377	junction_6	55.340153093199	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGTCCACATTTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	27291118	27338878	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039235	chr7	+	3763	5	FSM	ENSMUSG00000078779.5	ENSMUST00000205701.2	3437	5	10	-336	10	336	multi-exon	FALSE	canonical	3	101	junction_4	40.2639727299729	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTGTTTATTTTGCAT	418	False	NA	-1	True	NA	NA	NA	27538041	27556199	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_27538135_27542259_27542313_27543709_27543837_27545828_27545928_27552808
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039276	chr7	+	635	4	ISM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	98	459	-13	0	intron_retention	FALSE	canonical	3	19383	junction_3	906.691543776358	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050174	28052121	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039290	chr7	-	764	5	NNC	ENSMUSG00000003444.9	novel	1281	4	NA	NA	34	-588	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	249.415692168717	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGTTCCTGTTGCTGATT	NA	False	NA	-17	True	AATGAA	-21	NA	28092099	28086158	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_28086450_28086623_28086729_28090236_28090322_28090514_28090574_28091875
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039294	chr7	+	2003	14	FSM	ENSMUSG00000003437.15	ENSMUST00000003529.9	2003	14	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_5	16.9726546514433	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTAAAGTCTCTGTTCC	569	False	NA	20	True	AATAAA	-21	NA	28092375	28098813	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095121_28095195_28095298_28095376_28095483_28095558_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039319	chr7	+	1971	7	FSM	ENSMUSG00000030598.16	ENSMUST00000032818.13	1958	7	-13	0	-13	0	multi-exon	FALSE	canonical	3	89	junction_6	22.6838170411321	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28416215	28437569	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039326	chr7	-	741	3	FSM	ENSMUSG00000045948.9	ENSMUST00000056078.9	722	3	-18	-1	-18	0	multi-exon	FALSE	canonical	3	503	junction_2	218	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	1626	False	NA	-5	True	AATAAA	-24	NA	28441263	28439065	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_28439665_28440911_28440980_28441189
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039370	chr7	+	2706	32	FSM	ENSMUSG00000037337.12	ENSMUST00000085835.8	2724	32	19	-1	-14	0	multi-exon	FALSE	canonical	3	103	junction_17	22.4346431975332	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGGAGGAGAGATTTTT	NA	False	NA	23	True	AATAAA	-28	NA	28682271	28702704	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_28682480_28682639_28682698_28682814_28682906_28683507_28683573_28686072_28686129_28686216_28686265_28686412_28686456_28686539_28686613_28687498_28687631_28688018_28688082_28688179_28688262_28688760_28688875_28689098_28689178_28690412_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039385	chr7	-	418	1	Genic_Genomic	ENSMUSG00000030591.18	novel	NA	NA	NA	NA	1255	1	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGTGTATCCAGTCTGG	NA	False	NA	-9	True	AATAAA	-16	NA	28874029	28873611	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr7_-_28873600_28874000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039446	chr7	+	439	4	FSM	ENSMUSG00000074218.4	ENSMUST00000208441.2	485	4	-2	48	-2	0	multi-exon	FALSE	canonical	3	51	junction_1	502.814964861716	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTCCAGCCTGTGTGT	5722	False	NA	24	True	AATAAA	-25	NA	29883616	29885455	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_29883765_29884509_29884597_29884699_29884785_29885336
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039449	chr7	+	120	1	NIC	ENSMUSG00000074218.4	novel	393	4	NA	NA	1717	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTCCAGCCTGTGTGT	7441	False	NA	24	True	AATAAA	-25	NA	29885335	29885455	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_+_29885300_29885500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039506	chr7	-	1000	6	ISM	ENSMUSG00000006651.9	ENSMUST00000208792.2	2472	16	8417	-8	-69	2	3prime_fragment	FALSE	canonical	3	430	junction_4	31.3496411462715	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTGTTTCTGTTGGAGA	NA	False	NA	0	True	AATAAA	-22	NA	30136497	30134404	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039513	chr7	+	1826	13	ISM	ENSMUSG00000006649.18	ENSMUST00000006825.9	4608	30	10864	-12	-3919	12	3prime_fragment	FALSE	canonical	2	35	junction_6	9.85308750257163	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTCCAAGCCAAAGG	127	False	NA	NA	False	NA	NA	NA	30170013	30186660	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039519	chr7	+	2088	3	FSM	ENSMUSG00000036854.15_ENSMUSG00000106236.3	ENSMUST00000044048.8	1363	3	-728	3	16	0	multi-exon	FALSE	canonical	3	14	junction_1	10.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTGCCTTATGTCTGGGC	NA	False	NA	9	True	AATAAA	-17	NA	30251964	30254865	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_30252958_30253686_30253810_30253893
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039533	chr7	+	901	8	FSM	ENSMUSG00000078765.12	ENSMUST00000043273.16	884	8	-18	1	2	0	multi-exon	FALSE	canonical	3	411	junction_1	81.3154602866678	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGGTTTCCTTCCAC	NA	False	NA	35	True	AATAAA	-23	NA	30262727	30264789	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039549	chr7	+	1042	7	NIC	ENSMUSG00000078765.12	novel	860	8	NA	NA	0	1	intron_retention	FALSE	canonical	3	61	junction_1	200.697464414033	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262763	30264785	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_+_30262834_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30264033_30264127_30264224_30264519
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039573	chr7	-	1650	10	FSM	ENSMUSG00000036733.17	ENSMUST00000042726.14	1784	10	141	-7	-32	5	multi-exon	TRUE	canonical	3	640	junction_5	133.345925331332	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACTTAGAAACTGTTGG	3752	False	NA	-7	True	AATAAA	-23	NA	30349601	30340418	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345268_30345343_30345410_30346984_30347060_30347155_30347241_30349008_30349145_30349362
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039574	chr7	-	1564	9	FSM	ENSMUSG00000036733.17	ENSMUST00000108141.2	1526	9	-33	-5	-33	5	multi-exon	FALSE	canonical	3	345	junction_5	209.790818435889	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACTTAGAAACTGTTGG	3751	False	NA	-7	True	AATAAA	-23	NA	30349602	30340418	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345247_30346984_30347060_30347155_30347241_30349008_30349145_30349362
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039607	chr7	-	1833	9	FSM	ENSMUSG00000001247.17	ENSMUST00000108116.10	2071	9	240	-2	135	0	multi-exon	TRUE	canonical	3	93	junction_6	34.291945118351	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGCCTCTTGTTTTGCT	NA	False	NA	-3	True	AATAAA	-17	NA	30672612	30657199	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30665393_30665514_30671292_30671638_30672504
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039634	chr7	+	202	1	Intergenic	novelGene_319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTCTTCCCACCAACAG	NA	False	NA	NA	False	NA	NA	NA	33859260	33859462	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_33859300_33859500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039636	chr7	+	217	1	Antisense	novelGene_ENSMUSG00000052997.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATTCATAGCAAACAGCAT	NA	False	NA	NA	False	NA	NA	NA	33863550	33863767	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Antisense_chr7_+_33863600_33863800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039652	chr7	-	394	1	NIC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	3714	2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGGCTCAGCCTCTTCAG	NA	False	NA	-39	True	AATAAA	-18	NA	33901975	33901581	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_33901600_33902000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039664	chr7	+	196	1	Intergenic	novelGene_320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTATTTATTTCACCTAT	NA	False	NA	NA	False	NA	NA	NA	34055959	34056155	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_34056000_34056200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039665	chr7	+	1853	15	FSM	ENSMUSG00000063931.15	ENSMUST00000075068.14	1881	15	28	0	28	0	multi-exon	FALSE	canonical	3	282	junction_1	31.3925930429327	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGCCCATCTTCCTC	NA	False	NA	14	True	AATAAA	-19	NA	34611831	34744133	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_34611880_34620753_34620938_34623805_34623934_34634106_34634171_34642063_34642112_34645011_34645074_34653982_34654028_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039675	chr7	+	3362	15	FSM	ENSMUSG00000030494.14	ENSMUST00000032705.13	3508	15	144	2	-16	-2	multi-exon	FALSE	canonical	3	83	junction_1	11.3992928531124	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTTTTTTCTTTTGCT	NA	False	NA	24	True	AATAAA	-24	NA	35033738	35091712	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_35033837_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039684	chr7	+	2588	19	NNC	ENSMUSG00000023072.15	novel	2825	20	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	36.9808091706169	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTTGCATGTTTATTTC	NA	False	NA	8	True	AATAAA	-18	NA	35096500	35138112	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122833_35124084_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35131942_35132033_35134898_35135069_35137752
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039688	chr7	-	1626	12	FSM	ENSMUSG00000030491.17	ENSMUST00000032701.14	1620	12	1	-7	1	4	multi-exon	FALSE	canonical	3	378	junction_6	48.0311538018523	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCTTAAAATATTTTGTG	NA	False	NA	-6	True	AATAAA	-40	NA	35237169	35193029	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039706	chr7	+	648	1	FSM	ENSMUSG00000066543.9	ENSMUST00000119541.2	555	1	-37	-56	-37	56	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTTCAAGAGCCCTGGT	NA	False	NA	NA	False	AATAAA	-40	NA	35817661	35818309	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_35817700_35818300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039716	chr7	-	1250	7	FSM	ENSMUSG00000030423.8	ENSMUST00000032585.8	2113	7	44	819	-6	-819	multi-exon	FALSE	canonical	3	243	junction_2	18.1567251085284	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTCAAATTCCTGTACT	NA	False	NA	-4	True	AATAAA	-20	NA	37970803	37962238	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37967020_37968325_37968379_37970570
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039749	chr7	-	339	1	ISM	ENSMUSG00000069727.6	ENSMUST00000107992.2	3148	4	32275	0	32275	0	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCGTGTCCTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	42309867	42309528	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_42309500_42309900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039750	chr7	-	3197	4	FSM	ENSMUSG00000069727.6	ENSMUST00000107992.2	3148	4	-49	0	-25	0	multi-exon	FALSE	canonical	3	231	junction_3	55.1784982277215	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCGTGTCCTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	42342191	42309528	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_42312421_42314181_42314243_42314441_42314569_42342074
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039789	chr7	+	893	6	FSM	ENSMUSG00000004610.5	ENSMUST00000004729.5	893	6	-14	14	-14	3	multi-exon	FALSE	canonical	3	1745	junction_1	117.194539121923	762	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTTCCTCATTCTTT	1894	False	NA	38	True	AATAAA	-21	NA	43093492	43107210	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902_43106062_43106993
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039841	chr7	+	2229	8	FSM	ENSMUSG00000045411.17	ENSMUST00000146155.8	988	8	0	-1241	0	0	multi-exon	FALSE	canonical	0	0	junction_3	335.825391948779	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896210	43901739	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_43896248_43896674_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039890	chr7	-	1759	3	FSM	ENSMUSG00000038539.16	ENSMUST00000047356.11	1816	3	56	1	-28	0	multi-exon	FALSE	canonical	3	52	junction_1	35.5	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTGTCTTATCTTTG	9742	False	NA	-1	True	AATAAA	-18	NA	44466026	44461680	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_44462945_44464412_44464707_44465825
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039922	chr7	-	266	1	Genic_Genomic	ENSMUSG00000060279.15	novel	NA	NA	NA	NA	1058	2	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGACTGCCCACCCTGAG	3868	False	NA	0	True	AATAAA	-27	NA	44550060	44549794	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr7_-_44549800_44550100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039972	chr7	-	1640	7	FSM	ENSMUSG00000003420.9	ENSMUST00000003512.9	1770	7	59	71	3	3	multi-exon	FALSE	canonical	3	66	junction_3	11.6583303550151	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTGTGCATCGTTATT	824	False	NA	-4	True	CATAAA	-13	NA	44753216	44742484	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039981	chr7	-	579	5	FSM	ENSMUSG00000003429.12	ENSMUST00000211725.2	493	5	-37	-49	-21	-5	multi-exon	FALSE	canonical	3	381	junction_1	12273.9079045755	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAGGCTTGGAGTCTCAT	NA	False	NA	-6	True	AATAAA	-19	NA	44773796	44771807	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_44771973_44772252_44772383_44772586_44772663_44772842_44772975_44773720
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000039997	chr7	-	1112	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	-65	0	-65	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	18981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATGTGTGCTGTGCAGA	NA	False	NA	-1	True	AATAAA	-19	NA	44778250	44774981	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040023	chr7	-	1789	7	ISM	ENSMUSG00000074129.15	ENSMUST00000209626.2	734	8	-1	-81	0	0	intron_retention	FALSE	canonical	3	15796	junction_2	909.956409212368	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778160	44775345	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040029	chr7	-	470	6	NIC	ENSMUSG00000074129.15	novel	562	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	6457.37629691812	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778160	44775345	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776632_44776699_44776919_44776993_44778123
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040037	chr7	-	832	8	NIC	ENSMUSG00000074129.15	novel	658	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	190	junction_2	7403.95883350004	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778160	44775345	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_44775457_44775538_44775678_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777965
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040043	chr7	-	854	7	NIC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	11064	junction_6	2083.86483886711	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778160	44775345	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776517_44776632_44776699_44776919_44776993_44778123
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040044	chr7	-	585	7	NIC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	18	junction_6	6345.6770696453	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778160	44775345	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44778123
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040080	chr7	+	1186	10	FSM	ENSMUSG00000003423.16	ENSMUST00000085375.13	1185	10	0	-1	0	0	multi-exon	FALSE	canonical	3	114	junction_1	85.8518678298646	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44803737	44809489	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_44803965_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040104	chr7	+	789	1	FSM	ENSMUSG00000046721.12	ENSMUST00000026901.12	653	1	-26	-110	-26	110	mono-exon	FALSE	NA	NA	NA	NA	NA	937	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGGGCAGTGGTGGCACA	NA	False	NA	NA	False	NA	NA	NA	44974362	44975151	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_44974400_44975200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040115	chr7	-	1740	10	FSM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	-4	-1	-4	1	multi-exon	FALSE	canonical	3	1192	junction_9	143.840189098875	364	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATGTCTTACTGCACTT	9037	False	NA	1	True	AATAAA	-26	NA	45045170	45025875	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040144	chr7	+	2206	6	ISM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	13025	-16	138	16	3prime_fragment	FALSE	canonical	3	219	junction_3	11.2605506082074	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGTGGTGTGGTGGGT	NA	False	NA	41	True	AATACA	-37	NA	45097292	45106059	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040152	chr7	-	1346	3	NIC	ENSMUSG00000050708.17	novel	943	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	56898	junction_1	8751.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_45107708_45107958_45108655_45108953
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040192	chr7	+	820	5	ISM	ENSMUSG00000023467.19	ENSMUST00000085331.14	1525	10	4968	0	3762	0	3prime_fragment	FALSE	canonical	3	69	junction_2	4.38748219369606	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTCTGTGCGTTTGGA	5046	False	NA	17	True	AATAAA	-18	NA	45168993	45171806	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040197	chr7	-	2289	3	FSM	ENSMUSG00000040435.13	ENSMUST00000042105.11	2333	3	44	0	44	0	multi-exon	FALSE	canonical	3	356	junction_2	34	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTACGTGTGTTCTTTAT	3905	False	NA	44	True	AATAAA	-24	NA	45175648	45172340	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_45172747_45173162_45174816_45175418
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040207	chr7	+	1234	8	ISM	ENSMUSG00000030825.20	ENSMUST00000107752.12	1400	9	1147	7	-4	-4	3prime_fragment	FALSE	canonical	3	159	junction_2	204.709849418585	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATACCTTGGAGTGGTC	NA	False	NA	3	True	NA	NA	NA	45205463	45216738	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_45205518_45205736_45205820_45207031_45207099_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040230	chr7	+	451	5	NIC	ENSMUSG00000059070.17	novel	679	6	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	3357.7265653266	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCTCTGTGTTCATTCA	5952	False	NA	12	True	AATAAA	-19	NA	45367524	45370255	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45370137
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040287	chr7	-	503	3	FSM	ENSMUSG00000040026.9	ENSMUST00000211660.2	494	3	-8	-1	-8	0	multi-exon	FALSE	canonical	2	12	junction_2	3.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCGCTGTCACTGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	46363181	46361421	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_46361689_46362012_46362152_46363084
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040290	chr7	+	2750	15	FSM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	-9	-5	-9	5	multi-exon	FALSE	canonical	3	472	junction_5	47.1406925910002	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTTGGAGTCTTGACTG	4697	False	NA	9	True	AATAAA	-20	NA	46445517	46473229	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040294	chr7	+	1729	8	NIC	ENSMUSG00000063229.16	novel	912	6	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	2903.73895492817	173	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	19	True	AATAAA	-15	NA	46490856	46505051	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_+_46491077_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040302	chr7	+	1692	9	NIC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	37	junction_2	3566.89334146327	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	19	True	AATAAA	-15	NA	46495266	46505051	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_+_46495342_46496812_46496921_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040325	chr7	-	2029	12	FSM	ENSMUSG00000043262.17	ENSMUST00000094398.13	4616	12	42	2545	-13	-2222	multi-exon	FALSE	canonical	2	49	junction_10	11.9551503476414	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCACTGAGATTTCTTTT	NA	False	NA	NA	False	AATATA	-21	NA	46608233	46575508	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_46576237_46577168_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040352	chr7	+	191	1	Intergenic	novelGene_321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGATCTCTCCATAACT	NA	False	NA	NA	False	NA	NA	NA	51716650	51716841	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_51716600_51716800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040353	chr7	-	526	2	Genic_Genomic	ENSMUSG00000099647.2	novel	321	1	NA	NA	-46	275	multi-exon	FALSE	canonical	3	158	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTGCTACTTCAAAGC	NA	False	NA	NA	False	AATAAA	-40	NA	54062272	54061630	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr7_-_54062012_54062127
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040367	chr7	-	3002	7	NIC	ENSMUSG00000030452.17	novel	3197	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	69.789564644962	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGGTTTCCCAGCCCA	NA	False	NA	-19	True	AATAAA	-17	NA	55612224	55581033	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55612143
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040376	chr7	+	526	1	FSM	ENSMUSG00000078087.6	ENSMUST00000183090.2	399	1	-98	-29	-98	29	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGTTTTGCATCTGCTAA	NA	False	NA	NA	False	AATAAA	-29	NA	55663665	55664191	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_55663700_55664200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040424	chr7	+	391	2	FSM	ENSMUSG00000033429.11	ENSMUST00000206882.2	391	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATTTGTTATTTGA	NA	False	NA	21	True	ATTAAA	-22	NA	64042487	64061869	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_64042592_64061582
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040437	chr7	+	872	5	FSM	ENSMUSG00000078681.11	ENSMUST00000032726.14	908	5	45	-9	6	0	multi-exon	FALSE	canonical	3	473	junction_3	21.6333076527839	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAACTTTTTATTTGCC	NA	False	NA	26	True	AATAAA	-26	NA	65343200	65351659	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_65343318_65344890_65345076_65347443_65347619_65348839_65348916_65351340
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040465	chr7	-	1500	7	ISM	ENSMUSG00000015134.16	ENSMUST00000015278.15	3443	13	40	17621	40	0	5prime_fragment	FALSE	canonical	3	14	junction_3	2.80871659105879	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGACTCTGGCCTACAACC	NA	False	NA	NA	False	NA	NA	NA	66077225	66058258	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_66059028_66061249_66061379_66062105_66062168_66062648_66062779_66068850_66068992_66071958_66072064_66077061
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040514	chr7	+	2129	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107425.8	4956	4	0	2827	0	1	multi-exon	FALSE	canonical	3	272	junction_1	184.819431397844	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAACTGGTCCTTTCTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	78545674	78558130	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_78545763_78551977_78552579_78555590_78555792_78556891
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040533	chr7	+	211	1	Intergenic	novelGene_322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	209	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGCTACATACTTGAAGC	NA	False	NA	NA	False	NA	NA	NA	79112534	79112745	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_79112500_79112700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040557	chr7	-	1548	10	NIC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	604.630241052382	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	-5	True	AAAAAG	-13	NA	79765080	79744593	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040593	chr7	+	886	4	FSM	ENSMUSG00000030532.7	ENSMUST00000032747.7	1510	4	12	612	0	0	multi-exon	FALSE	canonical	3	96	junction_1	13.490737563232	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTTCTTCCTTCTCTG	NA	False	NA	17	True	AATAAA	-22	NA	79992863	79995850	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_79992998_79993286_79993343_79993463_79993705_79995395
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040602	chr7	-	2918	24	ISM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	125	24797	-10	4698	5prime_fragment	FALSE	canonical	3	539	junction_23	37.1883775571187	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGAACAGCTGTCCGACA	NA	False	NA	NA	False	AGTAAA	-18	NA	80453039	80386127	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_80386166_80387861_80388071_80388420_80388491_80388580_80388653_80388742_80388827_80389537_80389709_80392783_80392927_80393540_80393709_80393865_80393957_80398571_80398736_80401073_80401199_80401616_80401778_80401937_80402102_80405927_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245_80412314_80415042_80415120_80416632_80416711_80418056_80418214_80449597_80449698_80452888
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040608	chr7	-	1461	7	NIC	ENSMUSG00000025722.17	novel	2114	8	NA	NA	0	9	combination_of_known_junctions	FALSE	canonical	3	13	junction_4	46.1173021278951	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCAATTTACTTAGTTTT	NA	False	NA	2	True	AATAAA	-29	NA	80550982	80540999	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80550095_80550185_80550391_80550460_80550932
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040630	chr7	-	910	4	NIC	ENSMUSG00000061787.16	novel	383	5	NA	NA	0	2	intron_retention	FALSE	canonical	3	8882	junction_3	2020.94301420566	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTATTGTTCTTGCTG	NA	False	NA	-7	True	AATAAA	-15	NA	80994975	80992477	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_80992598_80993482_80993549_80994058_80994757_80994949
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040662	chr7	-	855	5	NNC	ENSMUSG00000025102.15	novel	504	4	NA	NA	10	1899	at_least_one_novel_splicesite	TRUE	canonical	3	98	junction_4	96.0325465662553	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGCCTACAACAAAATG	NA	False	NA	NA	False	NA	NA	NA	81439203	81430030	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81438999
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040671	chr7	-	802	5	NNC	ENSMUSG00000025102.15	novel	887	5	NA	NA	0	-102	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_4	112.09008653757	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTAATGTCAGTTATTT	NA	False	NA	-1	True	AGTAAA	-17	NA	81439213	81432031	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439072
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040692	chr7	+	295	1	Intergenic	novelGene_323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTGGATTCACTAAAGA	NA	False	NA	24	True	AATAAA	-24	NA	83406716	83407011	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_83406700_83407000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040722	chr7	+	510	1	ISM	ENSMUSG00000030560.18	ENSMUST00000032779.12	2493	7	31723	571	12956	-571	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTCTATGTGTGTTTAC	NA	False	NA	18	True	AATAAA	-23	NA	87959015	87959525	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_87959000_87959500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040724	chr7	+	1464	3	FSM	ENSMUSG00000030559.9	ENSMUST00000107256.4	1577	3	0	113	0	-113	multi-exon	FALSE	canonical	3	30	junction_1	4.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGTTTCTGATATTACC	NA	False	NA	5	True	AATAAA	-18	NA	88079480	88140667	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_88079812_88099688_88099970_88139815
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040729	chr7	+	208	1	Intergenic	novelGene_324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCTCAAACAGGGCAGGA	NA	False	NA	NA	False	NA	NA	NA	88877919	88878127	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_88877900_88878100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040770	chr7	-	747	5	FSM	ENSMUSG00000030615.13	ENSMUST00000136652.8	756	5	4	5	4	-5	multi-exon	FALSE	canonical	3	71	junction_2	308.308591349641	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGTCTGCAACATTAAAA	1670	False	NA	NA	False	AATAAA	-14	NA	90106412	90099912	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_90100144_90100750_90100866_90101936_90102109_90104631_90104728_90106279
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040777	chr7	-	2264	5	FSM	ENSMUSG00000030614.9	ENSMUST00000032843.9	2259	5	-4	-1	-4	1	multi-exon	FALSE	canonical	3	210	junction_1	24.1389208540896	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCATGGAGGTCCCTGT	6016	False	NA	NA	False	NA	NA	NA	90125213	90116644	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_90118370_90118777_90118890_90119972_90120167_90121805_90121928_90125102
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040786	chr7	-	3372	6	FSM	ENSMUSG00000030641.11	ENSMUST00000032877.11	3387	6	17	-2	2	2	multi-exon	FALSE	canonical	3	123	junction_4	35.6168499449348	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTTGTTATAATTTTT	NA	False	NA	1	True	AGTAAA	-20	NA	92523438	92506730	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92521969_92522053_92523348
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040799	chr7	-	643	2	NNC	ENSMUSG00000087412.5	novel	849	2	NA	NA	-24	21	at_least_one_novel_splicesite	FALSE	canonical	3	464	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTACTGGCCTTTTAA	NA	False	NA	-1	True	AATAAA	-36	NA	92828876	92828168	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_92828742_92828806
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040801	chr7	-	485	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	-24	164	-24	-164	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGCCAAAATCAGCAGCC	NA	False	NA	NA	False	AAGAAA	-30	NA	92828876	92828391	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_92828400_92828900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040820	chr7	+	644	3	FSM	ENSMUSG00000030647.9	ENSMUST00000032882.9	683	3	44	-5	44	5	multi-exon	FALSE	canonical	3	2164	junction_2	233	1304	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGGTTCTGCTTATT	NA	False	NA	26	True	ATTAAA	-25	NA	97049253	97057014	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_97049565_97056072_97056217_97056825
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040858	chr7	-	2263	8	FSM	ENSMUSG00000030747.6	ENSMUST00000033001.6	2262	8	-1	0	-1	0	multi-exon	FALSE	canonical	3	97	junction_4	10.965623464226	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTTGTTGCTTAATGC	NA	False	NA	NA	False	AATAAA	-18	NA	98831927	98802864	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_98803908_98806183_98806387_98807359_98807535_98808039_98808245_98813841_98813913_98814288_98814397_98818904_98819034_98831598
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040879	chr7	-	828	7	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	119	junction_6	5708.79212754813	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGACTGGATTGTGTCC	8422	False	NA	-34	True	AATAAA	-36	NA	99132858	99128088	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131901_99132798
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040899	chr7	-	191	1	ISM	ENSMUSG00000030718.10	ENSMUST00000207634.2	673	6	18123	0	8351	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTGAGGAGCTGTCCT	4320	False	NA	-8	True	AATAAA	-17	NA	99976134	99975943	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_99975900_99976100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040926	chr7	+	185	1	Intergenic	novelGene_325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTACATGAGATTTAAAT	NA	False	NA	NA	False	NA	NA	NA	100633169	100633354	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_100633200_100633400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040939	chr7	+	305	1	ISM	ENSMUSG00000001829.18	ENSMUST00000001884.14	4627	16	123877	2354	23904	4	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACCTTGCCCTCATGCCT	NA	False	NA	-18	True	AATAAA	-28	NA	101436716	101437021	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_101436700_101437000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040988	chr7	-	2256	9	FSM	ENSMUSG00000070426.13	ENSMUST00000096639.12	2249	9	-7	0	-7	0	multi-exon	FALSE	canonical	3	288	junction_4	49.7203114933927	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCCTTTTTTTTTTTGCC	NA	False	NA	0	True	AATAAA	-34	NA	101714372	101668343	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714272
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000040999	chr7	+	204	1	Intergenic	novelGene_326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGATTAAGAACTCAAGAAG	NA	False	NA	NA	False	NA	NA	NA	101798106	101798310	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_101798100_101798300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041071	chr7	-	425	2	Intergenic	novelGene_327	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	39	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATGTTACAATTACTTGAA	NA	False	NA	NA	False	AATAAA	-24	NA	106838166	106837039	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_-_106837208_106837909
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041075	chr7	+	1019	4	NNC	ENSMUSG00000057215.7	novel	1294	6	NA	NA	-11	-7266	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	13.7194104181711	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAACAGGCCAGCTTCA	NA	False	NA	NA	False	NA	NA	NA	106842217	106892337	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_+_106842336_106883988_106884145_106884819_106884938_106891710
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041088	chr7	-	903	4	FSM	ENSMUSG00000036111.9	ENSMUST00000207178.2	912	4	115	-106	115	3	multi-exon	FALSE	canonical	3	61	junction_1	6.37704215656966	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGACTGCATTGTTCACAT	NA	False	NA	-1	True	ATTAAA	-21	NA	108774299	108737775	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_108738184_108739788_108739915_108742662_108742877_108774144
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041108	chr7	+	1037	6	FSM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	-12	3	-12	-3	multi-exon	FALSE	canonical	3	170	junction_1	91.1249691357972	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTCATTTTATTGCTATT	NA	False	NA	NA	False	AATAAA	-22	NA	109302884	109311393	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_109302984_109303152_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041152	chr7	-	3689	21	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	-3	0	-1	0	intron_retention	FALSE	canonical	3	1102	junction_8	1132.63140517999	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682227	110671138	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041159	chr7	+	206	1	Intergenic	novelGene_328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGAGGCAGGGAGCATG	NA	False	NA	NA	False	NA	NA	NA	112442137	112442343	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_112442100_112442300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041164	chr7	+	1665	9	ISM	ENSMUSG00000055116.9	ENSMUST00000211770.2	2464	20	60874	-286	-9923	0	3prime_fragment	FALSE	canonical	3	70	junction_1	14.6287388383278	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGTTCCCAATTGATAA	NA	False	NA	NA	False	AATAAA	-20	NA	112894703	112913333	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_112894801_112898393_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041183	chr7	+	193	1	Intergenic	novelGene_329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGGTCTCGGCCAGTCAG	NA	False	NA	NA	False	NA	NA	NA	113855031	113855224	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_113855000_113855200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041199	chr7	-	2618	9	NIC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	-2	intron_retention	TRUE	canonical	3	2548	junction_5	193.487685331651	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTGTCAAGTTTTTGTT	NA	False	NA	-2	True	AATAAA	-15	NA	113875295	113863842	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041209	chr7	-	829	4	FSM	ENSMUSG00000030669.14	ENSMUST00000032907.9	830	4	3	-2	-2	2	multi-exon	FALSE	canonical	3	6	junction_1	40.2022663816634	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAACCATGGTGGTCATT	2082	False	NA	NA	False	AATAAA	-18	NA	114235544	114232525	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_114233021_114233702_114233844_114234361_114234457_114235446
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041212	chr7	-	195	2	Intergenic	novelGene_330	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAAGCTTTAAAAATCCT	9325	False	NA	NA	False	NA	NA	NA	115713414	115685283	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_-_115685456_115713391
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041227	chr7	-	952	1	ISM	ENSMUSG00000045659.19	ENSMUST00000182834.8	5257	25	113374	2	5087	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGCTCTTGCTGGCTGT	1334	False	NA	0	True	ATTAAA	-19	NA	115723673	115722721	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_115722700_115723700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041232	chr7	-	953	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	5123.42420652438	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTTTTGTGGTTCTT	NA	False	NA	-5	True	AATAAA	-15	NA	115933370	115930744	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_115930819_115931613_115931960_115931979_115932334_115932930_115933010_115933134_115933184_115933319
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041237	chr7	-	658	5	FSM	ENSMUSG00000090862.4	ENSMUST00000206963.2	653	5	-3	-2	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4507.63410782197	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTTTTGTGGTTCTT	NA	False	NA	-5	True	AATAAA	-15	NA	115933368	115930744	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041238	chr7	-	1121	5	FSM	ENSMUSG00000090862.4	ENSMUST00000205906.2	1150	5	31	-2	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4265.5784118335	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTTTTGTGGTTCTT	NA	False	NA	-5	True	AATAAA	-15	NA	115933370	115930744	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_115930819_115931613_115931715_115932163_115933010_115933134_115933184_115933319
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041245	chr7	-	2345	4	NNC	ENSMUSG00000090862.4	novel	2363	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	12	junction_1	4875.52479226596	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTTTTGTGGTTCTT	NA	False	NA	-5	True	AATAAA	-15	NA	115933370	115930744	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_115931960_115931979_115933010_115933134_115933184_115933319
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041260	chr7	-	373	4	NIC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	28	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	4720.99794064301	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715383	117708286	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_117708417_117714007_117714088_117714331_117714470_117715358
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041263	chr7	-	463	5	NNC	ENSMUSG00000008683.17	novel	640	5	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	4298.36032691537	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715383	117708286	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117715354
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041264	chr7	-	479	5	NIC	ENSMUSG00000008683.17	novel	640	5	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	4285.46860769041	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715364	117708286	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117715319
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041278	chr7	+	195	1	Intergenic	novelGene_331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCAAGGGTCAGCAAGAT	NA	False	NA	NA	False	NA	NA	NA	117839991	117840186	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_117840000_117840200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041285	chr7	-	1587	6	FSM	ENSMUSG00000033917.16	ENSMUST00000038791.15	1582	6	-5	0	-5	0	multi-exon	TRUE	canonical	3	428	junction_5	40.804901666344	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTACTGATCTTCTGGT	NA	False	NA	3	True	AATAAA	-28	NA	118305006	118287767	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_118288374_118290805_118291018_118293715_118293809_118294258_118294365_118297777_118297954_118304612
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041292	chr7	+	3119	31	FSM	ENSMUSG00000030982.20	ENSMUST00000059390.13	5097	31	503	1475	-3	2	multi-exon	TRUE	canonical	3	302	junction_1	75.0223744403406	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTCTCGGTGTGTGTT	NA	False	NA	12	True	ATTAAA	-23	NA	118339951	118440714	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118403326_118403408_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041300	chr7	-	1743	5	NNC	ENSMUSG00000030980.18	novel	5382	5	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	298.679175705304	23	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGTCACCTTCCGTTAAG	NA	False	NA	-33	True	AATAAA	-15	NA	118454907	118444721	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_118445318_118447719_118447798_118449843_118449913_118451625_118452564_118454845
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041308	chr7	-	1929	1	ISM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	3777	0	3743	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCATTCTTTTTTATT	NA	False	NA	-1	True	AATAAA	-20	NA	119316244	119314315	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_119314300_119316200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041310	chr7	-	2689	4	FSM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_1	48.9239773072014	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCATTCTTTTTTATT	NA	False	NA	-1	True	AATAAA	-20	NA	119320021	119314315	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_119316293_119317244_119317494_119318349_119318525_119319733
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041314	chr7	+	1268	2	FSM	ENSMUSG00000100153.3	ENSMUST00000207161.2	1437	2	187	-18	-15	18	multi-exon	FALSE	canonical	3	469	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAGCTTGGGAATGACA	NA	False	NA	NA	False	NA	NA	NA	119339335	119341467	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_119340294_119341157
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041317	chr7	+	2109	1	FSM	ENSMUSG00000100153.3	ENSMUST00000118909.2	972	1	8	-1145	8	18	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAGCTTGGGAATGACA	NA	False	NA	NA	False	NA	NA	NA	119339358	119341467	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_119339400_119341500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041364	chr7	+	199	1	Intergenic	novelGene_332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAAGGTAGCCTTGTCCC	NA	False	NA	NA	False	NA	NA	NA	121683431	121683630	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_121683400_121683600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041424	chr7	-	3389	8	FSM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	0	-1	0	1	multi-exon	FALSE	canonical	3	215	junction_7	21.1920277655614	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGGTTTCTGTCTTTG	NA	False	NA	-5	True	AATAAA	-21	NA	125995909	125982024	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041431	chr7	+	1783	10	FSM	ENSMUSG00000073838.11	ENSMUST00000098048.6	1679	10	-100	-4	-100	0	multi-exon	FALSE	canonical	3	611	junction_6	33.4490583749803	279	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTCTTGTGTCTTCTGT	NA	False	NA	4	True	AATAAA	-21	NA	126086432	126089903	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126088876_126088963_126089084_126089492
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041467	chr7	+	1172	10	FSM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	-6	146	-6	0	multi-exon	FALSE	canonical	3	419	junction_3	31.8433666561813	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTCCTGGGCCTCAC	105	False	NA	33	True	AATAAA	-16	NA	126248474	126271951	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041485	chr7	-	857	5	ISM	ENSMUSG00000030707.16	ENSMUST00000106364.8	1747	11	3004	1	11	-1	3prime_fragment	FALSE	canonical	3	11	junction_2	3	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTCAGACTCCGGTGAAC	NA	False	NA	NA	False	AATAAA	-20	NA	126300388	126298945	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_126299158_126299428_126299645_126299755_126299814_126299911_126300058_126300163
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041506	chr7	-	118	1	ISM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	3903	0	2400	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	2215	False	NA	-3	True	AATAAA	-18	NA	126394523	126394405	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_126394400_126394500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041519	chr7	-	1533	8	NIC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-11	0	intron_retention	FALSE	canonical	3	19253	junction_4	590.139658323799	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398353	126394405	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396949_126398216
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041537	chr7	-	835	1	Genic_Genomic	ENSMUSG00000059981.13	novel	NA	NA	NA	NA	745	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGATGTCTCCCTTTT	9418	False	NA	-4	True	AATAAA	-21	NA	126465683	126464848	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr7_-_126464800_126465700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041581	chr7	-	1336	7	FSM	ENSMUSG00000042502.11	ENSMUST00000166791.8	3284	7	-64	2012	-14	-14	multi-exon	FALSE	canonical	3	356	junction_6	93.763295353542	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGGGCTTCTCCATAGCT	5394	False	NA	-18	True	AATAAA	-26	NA	126795236	126792843	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126795100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041596	chr7	+	656	7	NNC	ENSMUSG00000030672.13	novel	268	4	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	712.609621196783	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	4018	False	NA	32	True	AATAAA	-24	NA	126811837	126813460	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_+_126811894_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041602	chr7	+	624	5	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1440	10	-66	0	3prime_fragment	FALSE	canonical	3	1768	junction_4	19.9311314279947	115	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	4400	False	NA	32	True	AATAAA	-24	NA	126812219	126813460	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041616	chr7	+	1052	1	ISM	ENSMUSG00000045598.11	ENSMUST00000106312.4	3342	2	3930	137	3697	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGTGTGGTTATGTGT	NA	False	NA	27	True	AATAAA	-17	NA	126836162	126837214	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_126836200_126837200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041620	chr7	-	689	3	FSM	ENSMUSG00000042462.5	ENSMUST00000035276.5	676	3	-11	-2	-11	2	multi-exon	FALSE	canonical	3	3852	junction_1	65	1194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCGATTTTTCTTGAGTAG	2479	False	NA	1	True	AATAAA	-20	NA	126859892	126856128	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_126856509_126858529_126858641_126859694
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041635	chr7	-	651	1	ISM	ENSMUSG00000045251.14	ENSMUST00000136123.8	1298	2	2410	0	2233	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	9335	False	NA	-4	True	ATTAAA	-17	NA	127018789	127018138	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_127018100_127018800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041645	chr7	+	211	1	Intergenic	novelGene_333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAGAGAGAGAGAGAGA	1243	False	NA	NA	False	NA	NA	NA	127052960	127053171	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr7_+_127053000_127053200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041669	chr7	+	1856	2	FSM	ENSMUSG00000043964.15	ENSMUST00000061587.13	1996	2	2	138	2	-138	multi-exon	FALSE	canonical	3	68	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATGGCTATGAATGGGAT	NA	False	NA	19	True	AATAAA	-19	NA	127368988	127374184	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_127369389_127372728
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041671	chr7	+	98	1	ISM	ENSMUSG00000042308.15	ENSMUST00000047075.14	6487	19	23355	0	21448	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGTCAGTATCTTTGG	1305	False	NA	17	True	ATTAAA	-17	NA	127399196	127399294	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_127399200_127399300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041688	chr7	-	788	3	FSM	ENSMUSG00000096145.3	ENSMUST00000033074.8	748	3	-33	-7	-33	7	multi-exon	FALSE	canonical	3	262	junction_2	18.5	369	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATATGTCTGCCAGAGACC	NA	False	NA	-4	True	AATAAA	-26	NA	127494822	127492227	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_127492664_127493676_127493787_127494580
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041718	chr7	+	218	1	ISM	ENSMUSG00000030795.19	ENSMUST00000106251.10	5536	15	14358	3669	-1264	0	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	7118	False	NA	37	True	ATTAAA	-20	NA	127580986	127581204	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_127581000_127581200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041782	chr7	-	2147	10	FSM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	11	-6	11	6	multi-exon	FALSE	canonical	3	402	junction_6	42.9636653837854	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAATCTATTTACTTATT	NA	False	NA	1	True	AATAAA	-30	NA	132178116	132159200	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_132160060_132161374_132161520_132162480_132162595_132163512_132163642_132164315_132164439_132165935_132166064_132168497_132168594_132168794_132169020_132171634_132171870_132178023
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041806	chr7	+	1761	1	Genic_Genomic	ENSMUSG00000030965.20	novel	NA	NA	NA	NA	3978	2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATATTTTAGTGTCTGTCT	NA	False	NA	18	True	AATAAA	-20	NA	132485081	132486842	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr7_+_132485100_132486800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041821	chr7	+	1143	6	NIC	ENSMUSG00000030983.5	novel	1244	7	NA	NA	-7	-3	combination_of_known_splicesites	FALSE	canonical	3	78	junction_3	614.874491258175	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATACTTGAAGTGTTCATG	1315	False	NA	20	True	AATAAA	-21	NA	133311069	133322871	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_+_133311258_133315916_133315992_133316627_133316709_133319327_133319516_133320832_133321008_133322435
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041873	chr7	+	1946	8	FSM	ENSMUSG00000041769.14	ENSMUST00000155672.8	1938	8	-5	-3	3	0	multi-exon	FALSE	canonical	3	482	junction_3	92.005767343628	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	20	True	AATAAA	-34	NA	138448318	138484786	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041923	chr7	-	1561	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	-1	-3	-1	3	multi-exon	FALSE	canonical	3	1613	junction_2	95.2071854602651	1162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTGTTTTTAACTTCA	NA	False	NA	2	True	NA	NA	NA	139696390	139685619	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041940	chr7	-	2600	3	FSM	ENSMUSG00000060314.14	ENSMUST00000106052.2	3851	3	-43	1294	3	-1294	multi-exon	FALSE	canonical	3	50	junction_1	4	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTAAGCATGTTGTTTT	NA	False	NA	NA	False	AAGAAA	-7	NA	140402088	140390895	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_140393228_140398500_140398628_140401947
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041991	chr7	+	591	3	NNC	ENSMUSG00000025491.15	novel	736	2	NA	NA	32	3	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	552	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTCCTGTGTTGAGTTCG	NA	False	NA	27	True	AATAAA	-31	NA	140547984	140549741	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_+_140548037_140548152_140548352_140549401
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000041993	chr7	+	707	2	FSM	ENSMUSG00000025491.15	ENSMUST00000026564.9	736	2	32	-3	32	3	multi-exon	FALSE	canonical	3	1139	junction_1	0	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTCCTGTGTTGAGTTCG	NA	False	NA	27	True	AATAAA	-31	NA	140547984	140549741	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_140548352_140549401
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042013	chr7	-	1673	10	FSM	ENSMUSG00000025494.9	ENSMUST00000209294.2	1612	10	-59	-2	-29	0	multi-exon	TRUE	canonical	3	23	junction_9	39.3474550920669	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140680514	140671087	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042038	chr7	-	1662	10	FSM	ENSMUSG00000038650.16	ENSMUST00000167493.9	1656	10	0	-6	0	4	multi-exon	FALSE	canonical	3	317	junction_9	147.871899850621	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCCTTGTCGTTCTTTGTG	7992	False	NA	NA	False	ATTAAA	-20	NA	140752770	140740234	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140752654
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042046	chr7	-	235	1	ISM	ENSMUSG00000025499.19	ENSMUST00000026572.11	2828	6	2800	1821	817	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTGGCTGGAAGTA	2108	False	NA	-2	True	AGTAAA	-18	NA	140771073	140770838	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_140770800_140771100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042054	chr7	+	1545	6	FSM	ENSMUSG00000038618.13	ENSMUST00000046890.12	1525	6	-20	0	-20	0	multi-exon	TRUE	canonical	3	288	junction_1	23.1395764870492	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795752	140798571	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042097	chr7	+	1667	7	FSM	ENSMUSG00000025510.15	ENSMUST00000058746.7	1619	7	-39	-9	-39	8	multi-exon	FALSE	canonical	3	37	junction_1	95.130465969402	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTTGCTGACAGGACCT	671	False	NA	16	True	NA	NA	NA	141048695	141051394	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_141048810_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042102	chr7	+	933	1	Genic_Genomic	ENSMUSG00000025510.15	novel	NA	NA	NA	NA	166	8	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTTGCTGACAGGACCT	2437	False	NA	16	True	NA	NA	NA	141050461	141051394	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr7_+_141050500_141051400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042107	chr7	-	349	2	NNC	ENSMUSG00000038489.9	novel	1650	2	NA	NA	-228	-1268	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	0	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTCTAACTTCCAAGGTG	7772	False	NA	-29	True	AGTAAA	-21	NA	141055273	141053040	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr7_-_141053318_141055201
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042123	chr7	+	941	1	ISM	ENSMUSG00000002957.12	ENSMUST00000003038.12	4646	22	69898	0	69541	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGTGTGGTTTTTGTGG	NA	False	NA	28	True	AATAAA	-22	NA	141211983	141212924	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_141212000_141212900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042138	chr7	+	572	5	FSM	ENSMUSG00000037772.14	ENSMUST00000038675.7	692	5	120	0	-29	0	multi-exon	FALSE	canonical	3	973	junction_1	229.96847610053	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGACACTTTGCCTT	NA	False	NA	2	True	AATAAA	-20	NA	142086868	142094484	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_142086932_142088741_142088865_142089806_142089890_142091003_142091078_142094255
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042151	chr7	+	207	1	ISM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	14985	4	1523	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACTGCCAGACCTCTTC	NA	False	NA	38	True	AATAAA	-26	NA	142621460	142621667	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_142621500_142621700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042162	chr7	+	429	1	FSM	ENSMUSG00000045752.14	ENSMUST00000207776.2	1735	1	1312	-6	898	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGGCTTTTTCCGGGC	NA	False	NA	22	True	AATAAA	-21	NA	142624401	142624830	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_+_142624400_142624800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042168	chr7	-	575	1	ISM	ENSMUSG00000059119.10	ENSMUST00000072727.7	2285	16	34939	0	10507	0	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTTTTTTTGTTGTTT	1061	False	NA	-1	True	ATTAAA	-20	NA	143067890	143067315	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_-_143067300_143067900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042171	chr7	-	2316	16	FSM	ENSMUSG00000059119.10	ENSMUST00000072727.7	2285	16	-31	0	-17	0	multi-exon	FALSE	canonical	3	502	junction_2	192.287354411741	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTTTTTTTGTTGTTT	NA	False	NA	-1	True	ATTAAA	-20	NA	143102860	143067315	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042196	chr7	+	2398	8	ISM	ENSMUSG00000058454.16	ENSMUST00000124340.8	2556	9	558	-1	-50	1	3prime_fragment	TRUE	canonical	3	394	junction_5	16.39686381163	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTTGTACTGTCTCCTG	NA	False	NA	33	True	NA	NA	NA	143383920	143402148	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr7_+_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042200	chr7	+	2507	9	NIC	ENSMUSG00000058454.16	novel	2752	9	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	171.596137412822	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	32	True	NA	NA	NA	143383979	143402147	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr7_+_143384003_143387504_143387674_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042222	chr7	+	2140	1	Genic_Genomic	ENSMUSG00000050917.6	novel	NA	NA	NA	NA	1723	5	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTCTGCTTTGTCTTT	9725	False	NA	33	True	ATTAAA	-23	NA	144416845	144418985	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr7_+_144416800_144419000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042233	chr8	-	1127	5	FSM	ENSMUSG00000069633.13	ENSMUST00000004686.13	2870	5	35	1708	0	-1705	multi-exon	FALSE	canonical	3	21	junction_1	4.14578098794425	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGCATGAGGTGATTA	NA	False	NA	2	True	ATTAAA	-20	NA	3517645	3508812	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_3509435_3510271_3510335_3513921_3514101_3515782_3515972_3517571
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042245	chr8	-	2680	19	FSM	ENSMUSG00000019470.13	ENSMUST00000019614.13	2677	19	0	-3	0	3	multi-exon	FALSE	canonical	3	374	junction_12	44.2084358744927	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTTGACCTCCTTCCTG	1011	False	NA	-1	True	AATACA	-19	NA	3671316	3660083	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042248	chr8	+	197	1	Intergenic	novelGene_334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATTACAATACCAATATC	1182	False	NA	NA	False	ATTAAA	-10	NA	3667145	3667342	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_3667100_3667300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042265	chr8	-	371	2	FSM	ENSMUSG00000089665.3	ENSMUST00000159364.3	392	2	25	-4	25	4	multi-exon	FALSE	canonical	3	78	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATGTCTTTCTATTACA	NA	False	NA	0	True	AATACA	-19	NA	3722337	3721183	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_3721397_3722179
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042279	chr8	+	1373	1	ISM	ENSMUSG00000002948.20	ENSMUST00000062686.11	3525	12	7764	0	-148	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTGTCCTAAGCCTGG	NA	False	NA	20	True	AATAAA	-21	NA	4296524	4297897	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_4296500_4297900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042286	chr8	-	1804	13	FSM	ENSMUSG00000002949.16	ENSMUST00000003029.14	1790	13	-2	-12	-2	12	multi-exon	FALSE	canonical	3	458	junction_5	35.4920765805553	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGTACCTCTCTGCTG	NA	False	NA	-1	True	AATAAA	-34	NA	4325915	4309718	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042307	chr8	-	2200	13	FSM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	-39	-5	-26	5	multi-exon	TRUE	canonical	3	204	junction_9	39.0672497112351	323	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAAATGTGGATTTATTT	NA	False	NA	0	True	TATAAA	-20	NA	4829593	4785970	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042316	chr8	-	759	1	ISM	ENSMUSG00000040459.12	ENSMUST00000048545.10	3197	4	23187	1501	14929	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTAAGCAATTTTTAT	NA	False	NA	-11	True	AATAAA	-35	NA	8717334	8716575	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_-_8716600_8717300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042318	chr8	-	1113	2	ISM	ENSMUSG00000040459.12	ENSMUST00000207070.2	525	3	608	-773	608	0	3prime_fragment	FALSE	canonical	3	955	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTAAGCAATTTTTAT	NA	False	NA	-11	True	AATAAA	-35	NA	8731655	8716575	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_-_8717417_8731383
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042334	chr8	+	1093	2	FSM	ENSMUSG00000045969.9	ENSMUST00000210740.2	1866	2	0	773	0	429	multi-exon	FALSE	canonical	2	8	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCCAGGTTGCTGAAGTA	NA	False	NA	NA	False	NA	NA	NA	11606062	11612477	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_11606096_11611417
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042353	chr8	-	2398	7	FSM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	160.305350988529	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685754	11661582	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11685410
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042386	chr8	+	2418	11	FSM	ENSMUSG00000038482.12	ENSMUST00000209396.2	2421	11	9	-6	9	0	multi-exon	FALSE	canonical	3	161	junction_2	290.39449030586	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	2129	False	NA	94	True	AATAAA	-24	NA	13388776	13428448	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042431	chr8	+	1019	1	FSM	ENSMUSG00000074461.3	ENSMUST00000098916.3	2130	1	22	1089	22	-1089	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGCTGCTTTCTTCT	4329	False	NA	NA	False	NA	NA	NA	14140482	14141501	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_14140500_14141500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042439	chr8	+	2466	4	NIC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-151	2880	combination_of_known_junctions	FALSE	canonical	3	37	junction_2	81.7897032367495	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGGTATGATGCCTAT	NA	False	NA	10	True	TATAAA	-18	NA	14938852	14947939	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_+_14939119_14940491_14940624_14944571_14945231_14946530
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042443	chr8	-	352	1	Intergenic	novelGene_335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGCCCTTTAATAACCT	6074	False	NA	NA	False	ATTAAA	-17	NA	18896198	18895846	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_-_18895800_18896200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042445	chr8	+	2642	8	FSM	ENSMUSG00000031467.11	ENSMUST00000149565.8	10779	8	197	7940	195	0	multi-exon	FALSE	canonical	3	636	junction_4	34.1778063804509	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTCTTGTTTTTTCAA	NA	False	NA	15	True	AATAAA	-25	NA	18896489	18933437	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929745_18931753
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042449	chr8	+	717	1	FSM	ENSMUSG00000081094.5	ENSMUST00000122422.3	591	1	-28	-98	-28	98	mono-exon	FALSE	NA	NA	NA	NA	NA	3968	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGACTCAGAGCTAAACAAA	7089	False	NA	NA	False	AATAAA	-33	NA	19542923	19543640	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_19542900_19543600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042493	chr8	+	1627	4	FSM	ENSMUSG00000063362.14	ENSMUST00000072572.13	4960	4	-2	3335	-2	-1587	multi-exon	FALSE	canonical	3	45	junction_2	9.93310961716756	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCCTAAATTTATTCTT	NA	False	NA	NA	False	NA	NA	NA	22550734	22558308	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_22550787_22551901_22552133_22555015_22555948_22557896
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042498	chr8	-	2031	16	FSM	ENSMUSG00000031478.17	ENSMUST00000033865.16	2021	16	-10	0	-10	0	multi-exon	FALSE	canonical	3	19	junction_15	6.34350061086148	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTGTGCTGGTTTTCAA	NA	False	NA	2	True	AATACA	-17	NA	22656438	22618298	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_22618807_22619360_22619485_22621221_22621354_22622065_22622210_22623008_22623112_22632905_22632956_22636946_22637020_22638498_22638700_22639876_22639932_22646991_22647079_22647165_22647234_22648642_22648727_22650207_22650306_22650385_22650474_22652339_22652511_22656393
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042540	chr8	+	212	1	Intergenic	novelGene_336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATGAGTAAAAGCCAATC	3900	False	NA	NA	False	NA	NA	NA	23136041	23136253	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_23136000_23136300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042578	chr8	-	2364	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	-21	-6	-21	0	multi-exon	TRUE	canonical	3	3119	junction_12	186.058007680998	1153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTTCACTGGAAGTGA	NA	False	NA	-6	True	AATAAA	-25	NA	26337743	26306897	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042597	chr8	-	2784	5	FSM	ENSMUSG00000037251.6	ENSMUST00000061850.5	3613	5	8	821	8	-821	multi-exon	FALSE	canonical	3	50	junction_4	28.3681159050086	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTGGTGCTGGCATCC	NA	False	NA	NA	False	AATAAA	-15	NA	26484153	26471452	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_26473673_26476273_26476561_26477522_26477669_26479677_26479770_26484114
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042607	chr8	+	2249	3	FSM	ENSMUSG00000037214.13	ENSMUST00000036807.13	2295	3	46	0	46	0	multi-exon	FALSE	canonical	3	177	junction_1	13	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGGCCCTGCTTTTTT	NA	False	NA	7	True	ATTAAA	-18	NA	26648214	26654179	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_26648550_26650802_26650999_26652461
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042646	chr8	+	2170	7	FSM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	-2	965	-2	-965	multi-exon	FALSE	canonical	3	124	junction_5	19.2476549798208	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATCTCTTCTATTTGT	NA	False	NA	6	True	ATTAAA	-17	NA	31640340	31650117	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805_31645950_31648620_31648784_31649909
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042649	chr8	-	1913	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	-8	-3	-8	3	multi-exon	FALSE	canonical	3	742	junction_2	38.8285245790727	347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGAGAATTCTGTGG	NA	False	NA	1	True	TATAAA	-23	NA	31658800	31649487	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042665	chr8	+	1575	7	FSM	ENSMUSG00000009630.11	ENSMUST00000009774.11	1469	7	256	-362	256	362	multi-exon	FALSE	canonical	3	909	junction_3	33.4398298772919	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTAACTGTGATGTACA	9121	False	NA	23	True	AATAAA	-23	NA	34089908	34109831	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_34090047_34100682_34100893_34101775_34101950_34105477_34105568_34105693_34105856_34107054_34107174_34109149
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042671	chr8	+	1731	7	ISM	ENSMUSG00000031584.17	ENSMUST00000033992.9	2673	13	28237	1	12473	-1	3prime_fragment	FALSE	canonical	3	1640	junction_6	140.478250590221	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTGTCAGTGTATTTT	NA	False	NA	13	True	TATAAA	-16	NA	34171502	34188190	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_34171593_34172620_34172708_34175571_34175731_34179368_34179481_34183826_34183959_34185026_34185161_34187173
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042695	chr8	+	1886	6	FSM	ENSMUSG00000031532.8	ENSMUST00000239436.2	1897	6	13	-2	0	2	multi-exon	FALSE	canonical	3	207	junction_1	37.2633868562695	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTGTTTCGTGTGTGGTTT	NA	False	NA	35	True	AATAAA	-42	NA	34621729	34638001	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635012_34635610_34635766_34637249
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042754	chr8	-	1477	7	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38822	-1	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_4	56.917093702644	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	-1	True	TATAAA	-18	NA	43633345	43582844	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591838_43593679_43593776_43595725_43595759_43633233
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042759	chr8	-	1483	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38788	-1	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_6	54.6308576927445	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	-1	True	TATAAA	-18	NA	43633311	43582844	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43595725_43595759_43618053_43618097_43633233
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042769	chr8	+	1582	9	FSM	ENSMUSG00000091490.4	ENSMUST00000210136.2	1552	9	-27	-3	-27	3	multi-exon	FALSE	canonical	3	91	junction_2	178.11092049619	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTCTCTGCATGTGTT	NA	False	NA	24	True	AATAAA	-15	NA	43633550	43646921	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_43633650_43635378_43635395_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042773	chr8	+	1236	3	ISM	ENSMUSG00000091490.4	ENSMUST00000209200.2	1519	8	-7	9249	-7	-2748	5prime_fragment	FALSE	canonical	3	424	junction_1	9	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACAAACACAAACACATGCA	NA	False	NA	NA	False	NA	NA	NA	43633570	43637652	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_43633650_43636158_43636403_43636739
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042784	chr8	-	641	1	Intergenic	novelGene_337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGTCATTTTTATTTCT	NA	False	NA	-12	True	CATAAA	-19	NA	43747891	43747250	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_-_43747200_43747900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042799	chr8	-	1738	5	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-55	0	at_least_one_novel_splicesite	FALSE	canonical	3	230	junction_1	1663.49968064319	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGAGTTCAATTTCTGG	NA	False	NA	NA	False	AATAAA	-17	NA	43760072	43748103	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr8_-_43749173_43749261_43749574_43753664_43753743_43757512_43757597_43759877
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042824	chr8	+	1655	12	FSM	ENSMUSG00000031634.14	ENSMUST00000034051.7	1640	12	-15	0	-15	0	multi-exon	FALSE	canonical	3	163	junction_6	20.6765727613893	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGTAGTCATGTAAATAC	8845	False	NA	104	True	AGTAAA	-19	NA	46428549	46449995	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_46428626_46432245_46432333_46433351_46433530_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042839	chr8	-	1447	8	ISM	ENSMUSG00000038291.17	ENSMUST00000176410.8	3275	17	69269	-6	9019	0	3prime_fragment	TRUE	canonical	3	50	junction_2	6.75519452430679	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGTGCTCAAAGGTATT	2375	False	NA	NA	False	AATAAA	-14	NA	46500470	46486302	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_-_46486860_46487438_46487540_46488574_46488757_46491491_46491559_46494353_46494472_46497004_46497170_46498222_46498337_46500327
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042847	chr8	-	454	1	NIC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	3409	-371	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCCTGCCCTTATTAACT	NA	False	NA	NA	False	AATAAA	-20	NA	46660658	46660204	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_-_46660200_46660700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042867	chr8	+	1531	1	ISM	ENSMUSG00000031628.10	ENSMUST00000211115.2	2601	7	20868	0	20717	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	21	True	CATAAA	-17	NA	47091193	47092724	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_47091200_47092700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042886	chr8	-	2613	3	FSM	ENSMUSG00000038069.7	ENSMUST00000212175.2	3393	3	-1	781	0	-781	multi-exon	FALSE	canonical	3	65	junction_1	31	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTGTGTTTTTTTTTCT	NA	False	NA	-1	True	ATTAAA	-27	NA	48166967	48163260	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_48165330_48165922_48166054_48166554
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042890	chr8	+	2098	6	FSM	ENSMUSG00000031562.17	ENSMUST00000170263.10	2096	6	0	-2	0	2	multi-exon	TRUE	canonical	3	319	junction_1	42.4480859403578	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTTTGCTTTTATATTTA	NA	False	NA	12	True	ATTAAA	-18	NA	48562992	48594702	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042910	chr8	-	167	1	Intergenic	novelGene_338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTCTTGGCTTCCATCT	NA	False	NA	NA	False	NA	NA	NA	52908826	52908659	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_-_52908700_52908800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042950	chr8	+	1193	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	-69	1504	-69	1286	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	1469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTGTATTAATTTTT	NA	False	NA	10	True	AATAAA	-21	NA	57964871	57967529	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000042963	chr8	+	1140	5	NNC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	34	1280	at_least_one_novel_splicesite	FALSE	canonical	3	122	junction_1	2922.66398171257	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTGTGTTTGTATTA	NA	False	NA	4	True	AATAAA	-15	NA	57965041	57967523	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr8_+_57965163_57965608_57965783_57966095_57966242_57966323_57966499_57966999
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043006	chr8	-	1681	5	NIC	ENSMUSG00000031604.11	novel	2044	6	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	3	28	junction_3	300.648777645944	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	-17	True	AATAAA	-1	NA	65186612	65171172	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_-_65172216_65173375_65173531_65175497_65175625_65180657_65180943_65186541
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043030	chr8	+	205	1	Intergenic	novelGene_339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAATTTCCTGGTCATCG	NA	False	NA	NA	False	NA	NA	NA	67166317	67166522	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_67166300_67166500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043060	chr8	-	977	8	Fusion	ENSMUSG00000048967.17_ENSMUSG00000036199.10	novel	785	6	NA	NA	911	0	multi-exon	TRUE	canonical	2	10	junction_1	2773.96888730842	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGCCTCTTTTGTGTA	NA	False	NA	0	True	AATAAA	-16	NA	70354297	70340437	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Fusion_chr8_-_70340673_70341636_70341788_70341858_70341973_70342092_70342204_70343515_70343625_70347153_70347226_70347891_70347971_70354191
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043097	chr8	+	168	1	Intergenic	novelGene_340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTTGAAAAAAAAAAGACTT	NA	False	NA	8	True	NA	NA	NA	70632066	70632234	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_70632100_70632200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043119	chr8	+	971	9	NIC	ENSMUSG00000055681.15	novel	1300	10	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_7	436.980477252703	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	712	False	NA	26	True	AATAAA	-15	NA	70755427	70765640	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70765355_70765431_70765508
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043142	chr8	-	677	5	FSM	ENSMUSG00000058833.12	ENSMUST00000136913.2	671	5	-2	-4	-2	0	multi-exon	FALSE	canonical	3	28	junction_1	340.250918441082	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959389	70956944	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_70957179_70957633_70957711_70958405_70958611_70959146_70959230_70959311
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043147	chr8	-	1477	4	FSM	ENSMUSG00000090137.9	ENSMUST00000125184.8	711	4	160	-926	-4	926	multi-exon	FALSE	canonical	3	14257	junction_3	3914.7897346686	3575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGTGATGGGCATGGTGGT	NA	False	NA	NA	False	NA	NA	NA	70963071	70959986	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70962987
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043155	chr8	-	866	3	FSM	ENSMUSG00000090137.9	ENSMUST00000124967.2	611	3	-88	-167	-88	0	multi-exon	FALSE	canonical	3	22365	junction_1	190	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	False	NA	-4	True	AATAAA	-28	NA	70962683	70960912	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_70961179_70961945_70962033_70962170
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043204	chr8	+	1288	1	ISM	ENSMUSG00000070002.8	ENSMUST00000093454.8	3072	12	51883	0	51883	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCTGTGGTTTGAGTAT	NA	False	NA	8	True	AATAAA	-16	NA	71044220	71045508	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_71044200_71045500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043219	chr8	-	1088	2	FSM	ENSMUSG00000038508.8	ENSMUST00000003808.8	1545	2	457	0	457	0	multi-exon	FALSE	canonical	3	308	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGTCTCAGTGACCTTG	1472	False	NA	-6	True	AATAAA	-18	NA	71084288	71082042	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_71082825_71083982
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043241	chr8	+	752	4	NIC	ENSMUSG00000031848.16	novel	925	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	158	junction_1	1562.13237453026	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71126028	71131402	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_+_71126108_71130427_71130527_71130603_71130785_71131009
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043250	chr8	+	396	1	Genic_Genomic	ENSMUSG00000031848.16	novel	NA	NA	NA	NA	693	1	mono-exon	FALSE	NA	NA	NA	NA	NA	360	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTGTTCTTCTGCCTAA	NA	False	NA	21	True	AATAAA	-21	NA	71131007	71131403	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr8_+_71131000_71131400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043268	chr8	-	1655	6	ISM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	919	0	717	0	3prime_fragment	FALSE	canonical	0	0	junction_5	41.0385184917779	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCGTCTTTTCATTTG	NA	False	NA	-1	True	AATAAA	-20	NA	71291445	71287772	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043281	chr8	-	813	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212019.2	795	4	-18	0	-4	0	multi-exon	FALSE	canonical	3	16397	junction_3	7846.8208565989	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350060	71348022	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_71348152_71348243_71348690_71348776_71348957_71350002
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043282	chr8	-	633	5	FSM	ENSMUSG00000045128.10	ENSMUST00000213053.2	576	5	-21	-36	-4	0	multi-exon	FALSE	canonical	3	63	junction_4	13769.0618144447	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350060	71348022	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71349976
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043295	chr8	+	197	1	Intergenic	novelGene_341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGATTACAATTGTT	NA	False	NA	NA	False	NA	NA	NA	71391879	71392076	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_71391900_71392100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043298	chr8	-	2117	11	FSM	ENSMUSG00000035439.14	ENSMUST00000035960.13	2013	11	426	-530	-30	530	multi-exon	FALSE	canonical	3	458	junction_6	24.6578587878185	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTCTTGGTCATGAAG	564	False	NA	-1	True	NA	NA	NA	71725152	71703238	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71721869_71721929_71724927
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043301	chr8	-	1588	11	FSM	ENSMUSG00000035439.14	ENSMUST00000110071.3	1452	11	-130	-6	-28	6	multi-exon	FALSE	canonical	3	71	junction_7	129.467524885587	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGATGCGTTTGTTCTGC	566	False	NA	-3	True	NA	NA	NA	71725150	71703762	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043303	chr8	-	1527	10	NIC	ENSMUSG00000035439.14	novel	2013	11	NA	NA	-28	1	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	153.13787864713	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAGTGTGATGCGTTTGT	566	False	NA	-8	True	NA	NA	NA	71725150	71703767	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71724927
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043342	chr8	+	1349	9	NNC	ENSMUSG00000031820.10	novel	1433	9	NA	NA	6	-74	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	103.031472740129	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACCCTTGGTGTCACTT	NA	False	NA	15	True	AATAAA	-17	NA	71849510	71857189	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr8_+_71849665_71850326_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043345	chr8	+	2078	9	NNC	ENSMUSG00000046295.14	novel	2136	9	NA	NA	0	5	at_least_one_novel_splicesite	TRUE	canonical	3	30	junction_4	25.4358875410315	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCTCCATGTCTCATC	NA	False	NA	23	True	NA	NA	NA	71858653	71862553	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859919_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043398	chr8	+	2088	1	ISM	ENSMUSG00000052446.18	ENSMUST00000131237.8	2689	4	17208	0	14799	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	1508	False	NA	16	True	AATAAA	-18	NA	72722089	72724177	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_72722100_72724200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043417	chr8	+	2065	12	FSM	ENSMUSG00000003033.16	ENSMUST00000003117.15	2084	12	20	-1	-8	1	multi-exon	FALSE	canonical	3	513	junction_9	40.3802177244139	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTTCTCTCTGTGTG	NA	False	NA	20	True	ATTAAA	-21	NA	72993881	73011230	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678_73006822_73007052_73007125_73007318_73007478_73009540_73009667_73009950_73010027_73010578
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043422	chr8	+	226	1	Intergenic	novelGene_342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGAACGAACGAACGAACGAG	NA	False	NA	NA	False	NA	NA	NA	73031868	73032094	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_73031900_73032100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043427	chr8	+	197	2	ISM	ENSMUSG00000055148.8	ENSMUST00000067912.8	1847	3	29	2122	29	-2122	5prime_fragment	FALSE	canonical	3	2987	junction_1	0	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGCCCCCGCCGCAGCCC	NA	False	NA	NA	False	NA	NA	NA	73072905	73073378	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_73072994_73073269
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043428	chr8	+	696	2	NIC	ENSMUSG00000055148.8	novel	1847	3	NA	NA	29	-305	combination_of_known_splicesites	FALSE	canonical	3	215	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGTAGTGGTGTGGCTG	NA	False	NA	34	True	ATTAAA	-21	NA	73072905	73075195	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_+_73072994_73074587
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043444	chr8	-	2148	5	FSM	ENSMUSG00000044600.15	ENSMUST00000167290.8	2892	5	14	730	-12	-730	multi-exon	FALSE	canonical	3	388	junction_4	37.7582772382427	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGTGTGTGAAAAATTGA	NA	False	NA	-35	True	GATAAA	-19	NA	73324918	73319761	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_73321653_73322699_73322791_73323809_73323863_73324717_73324760_73324847
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043478	chr8	+	2698	16	FSM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	-36	-9	12	4	multi-exon	FALSE	canonical	3	1402	junction_7	114.72564374774	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGTGTGAATACAAGGT	NA	False	NA	36	True	NA	NA	NA	75836215	75854325	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043504	chr8	-	2104	5	FSM	ENSMUSG00000031683.17	ENSMUST00000130325.8	3792	5	-8	1696	-8	-110	multi-exon	FALSE	canonical	3	636	junction_4	242.43865203387	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCCTCGTGGTCTGTGAA	NA	False	NA	0	True	NA	NA	NA	79547777	79533189	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79546615_79546715_79547676
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043519	chr8	+	229	1	Intergenic	novelGene_343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTTGATCATGGTTTTC	NA	False	NA	NA	False	NA	NA	NA	80334430	80334659	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_80334400_80334700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043555	chr8	-	1718	10	FSM	ENSMUSG00000031711.8	ENSMUST00000034147.4	1675	10	-26	-17	-26	3	multi-exon	FALSE	canonical	3	422	junction_3	43.069567612422	406	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTGTTTTATCAACTTA	NA	False	NA	0	True	AATAAA	-34	NA	83500815	83490232	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043578	chr8	-	1182	13	FSM	ENSMUSG00000031708.18	ENSMUST00000019382.17	1158	13	-21	-3	-11	1	multi-exon	FALSE	canonical	3	3555	junction_3	302.48290814891	1038	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTGTGTTCTTTAGGG	NA	False	NA	-2	True	AATAAA	-16	NA	84321127	84298325	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043613	chr8	-	2996	19	FSM	ENSMUSG00000002885.15	ENSMUST00000109802.3	2867	19	-10	-119	0	6	multi-exon	FALSE	canonical	3	115	junction_15	26.9886235749276	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCTTTGGAACAATAAAAAGA	NA	False	NA	NA	False	AATAAA	-23	NA	84467812	84449873	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043637	chr8	-	2224	13	FSM	ENSMUSG00000037103.9	ENSMUST00000210279.2	2199	13	-25	0	-20	0	multi-exon	FALSE	canonical	3	169	junction_7	21.0218140669797	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGTGTCCTGTTCTGT	9237	False	NA	-3	True	ACTAAA	-17	NA	84831417	84823700	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_84824138_84824365_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043653	chr8	-	454	1	Genic_Genomic	ENSMUSG00000019362.9	novel	NA	NA	NA	NA	3031	3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGCTGTTTGGTGCT	7748	False	NA	-4	True	AATAAA	-15	NA	84973317	84972863	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr8_-_84972900_84973300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043665	chr8	+	2323	17	NIC	ENSMUSG00000001909.17	novel	2114	15	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	133.003230693844	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	15	True	AATAAA	-15	NA	85412964	85426416	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_+_85413329_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043670	chr8	+	2034	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	11	-1	3	0	multi-exon	FALSE	canonical	3	38	junction_1	132.785409001705	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	15	True	AATAAA	-15	NA	85415903	85426416	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_85415979_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043708	chr8	-	760	1	NIC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	2070	-237	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCTCCTTCTCTGGGA	NA	False	NA	0	True	ATTAAA	-22	NA	85569475	85568715	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_-_85568700_85569500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043715	chr8	+	1839	13	FSM	ENSMUSG00000003808.19	ENSMUST00000003906.13	1826	13	-13	0	-13	0	multi-exon	FALSE	canonical	3	551	junction_9	56.0676055212713	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	38	True	AATAAA	-38	NA	85583604	85595886	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043723	chr8	+	327	1	ISM	ENSMUSG00000003808.19	ENSMUST00000003906.13	1826	13	11942	0	1368	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	38	True	AATAAA	-38	NA	85595559	85595886	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_85595600_85595900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043725	chr8	+	783	5	FSM	ENSMUSG00000003824.13	ENSMUST00000136026.8	1686	5	78	825	-4	-50	multi-exon	FALSE	canonical	3	1047	junction_2	374.154045815357	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGTCATACTTTATTCC	NA	False	NA	31	True	ATTAAA	-14	NA	85598817	85614025	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_85598883_85599348_85599462_85610059_85610214_85612563_85612753_85613763
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043747	chr8	+	1192	3	FSM	ENSMUSG00000003812.14	ENSMUST00000148573.2	1118	3	-69	-5	-69	5	multi-exon	FALSE	canonical	3	99	junction_1	1.5	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGAGTGGGGGTGTTTGC	NA	False	NA	9	True	AATAAA	-21	NA	85639950	85649549	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_85640158_85647022_85647134_85648675
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043772	chr8	+	897	6	NNC	ENSMUSG00000005161.16	novel	1500	6	NA	NA	-1	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1556.40642507026	92	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTGGTGTGTGTTT	NA	False	NA	19	True	AATAAA	-19	NA	85696321	85700946	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr8_+_85696388_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043797	chr8	+	414	1	NIC	ENSMUSG00000041203.10	novel	902	3	NA	NA	3050	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTTGGTTTATCTT	NA	False	NA	21	True	AGTAAA	-21	NA	85756501	85756915	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_+_85756500_85756900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043804	chr8	+	1865	10	FSM	ENSMUSG00000008167.15	ENSMUST00000095220.4	1907	10	42	0	0	0	multi-exon	TRUE	canonical	3	54	junction_4	11.5864970366477	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTGTGAGCTTTCTGT	NA	False	NA	22	True	AATAAA	-22	NA	85786725	85793750	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791126_85791209_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043860	chr8	-	612	1	ISM	ENSMUSG00000036934.10	ENSMUST00000047749.7	1587	4	23370	93	23351	-93	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTAGTGTGGTGTAGCT	NA	False	NA	1	True	AATAAA	-24	NA	86136092	86135480	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_-_86135500_86136100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043870	chr8	+	1609	1	Genic_Genomic	ENSMUSG00000031700.12	novel	NA	NA	NA	NA	6547	4	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGCTTGGTCAATAAAAAC	NA	False	NA	17	True	AATAAA	-23	NA	86252584	86254193	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr8_+_86252600_86254200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043880	chr8	+	2837	15	FSM	ENSMUSG00000047866.21	ENSMUST00000034141.18	2859	15	27	-5	27	4	multi-exon	TRUE	canonical	3	174	junction_5	34.038693468775	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTCTCCAGTGGGTTT	NA	False	NA	NA	False	AATAAA	-17	NA	87350698	87443264	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_87351045_87358013_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043886	chr8	+	539	1	FSM	ENSMUSG00000066362.6	ENSMUST00000183478.2	538	1	5	-6	5	6	mono-exon	FALSE	NA	NA	NA	NA	NA	4724	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAGACACTAAAGAGGAGC	NA	False	NA	43	True	AATAAA	-32	NA	87774321	87774860	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_87774300_87774900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043923	chr8	-	1750	10	FSM	ENSMUSG00000031667.17	ENSMUST00000125257.3	2079	10	10	319	6	-319	multi-exon	TRUE	canonical	3	258	junction_9	63.7020456287233	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGGAAAGTAATGCTCCT	NA	False	NA	-10	True	AATAAA	-26	NA	91860645	91850515	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043947	chr8	+	391	3	FSM	ENSMUSG00000031757.8	ENSMUST00000034207.8	398	3	7	0	7	0	multi-exon	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGTGGCTCAGAGTAT	6288	False	NA	NA	False	AATAAA	-16	NA	94863831	94865659	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_94863901_94864858_94864925_94865403
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043961	chr8	+	642	2	NIC	ENSMUSG00000031762.8	novel	511	3	NA	NA	-76	0	intron_retention	FALSE	canonical	3	13494	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCTCTGTGCATTGGT	NA	False	NA	37	True	AATAAA	-23	NA	94899411	94900196	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_+_94899821_94899963
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043973	chr8	+	1087	1	FSM	ENSMUSG00000031765.9	ENSMUST00000211807.2	1085	1	0	-2	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94905868	94906955	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_94905900_94907000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043977	chr8	+	355	3	NNC	ENSMUSG00000031765.9	novel	549	3	NA	NA	271	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7341	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94906139	94906955	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr8_+_94906203_94906450_94906517_94906729
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043979	chr8	+	423	3	NNC	ENSMUSG00000031765.9	novel	549	3	NA	NA	271	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	7292.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94906139	94906955	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr8_+_94906271_94906450_94906517_94906729
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000043993	chr8	+	1874	8	FSM	ENSMUSG00000031770.17	ENSMUST00000034220.8	1873	8	0	-1	0	1	multi-exon	FALSE	canonical	3	44	junction_2	160.784175279808	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGACTCCCATTGTCCT	NA	False	NA	29	True	AATAAA	-22	NA	95113122	95121987	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_95113367_95115983_95116062_95116151_95116224_95117345_95117477_95118359_95118483_95118801_95119153_95120423_95120530_95121218
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044033	chr8	+	1752	7	FSM	ENSMUSG00000031792.16	ENSMUST00000034245.16	1758	7	8	-2	8	2	multi-exon	FALSE	canonical	3	182	junction_6	19.6185852927495	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTGTCTTATTTTAAAC	NA	False	NA	14	True	AATAAA	-15	NA	96058919	96074137	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_96059094_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96073154
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044045	chr8	-	265	1	ISM	ENSMUSG00000031796.8	ENSMUST00000212731.2	4182	3	14244	0	1020	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTACTTTTTTATA	NA	False	NA	-6	True	AATAAA	-24	NA	96147141	96146876	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_-_96146900_96147100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044060	chr8	+	1367	7	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	-4	-3	combination_of_known_splicesites	FALSE	canonical	3	22	junction_1	132.221720353856	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTCAAACTTTCTTTAG	NA	False	NA	36	True	AATAAA	-23	NA	96442538	96445635	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_+_96442592_96442980_96443123_96443234_96443430_96443548_96443670_96444548_96444730_96444820_96444964_96445103
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044078	chr8	+	804	1	FSM	ENSMUSG00000061104.6	ENSMUST00000074053.6	789	1	7	-22	7	22	mono-exon	FALSE	NA	NA	NA	NA	NA	850	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGGTGTCACAAAGAAT	NA	False	NA	NA	False	AATACA	-35	NA	96551980	96552784	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_96552000_96552800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044084	chr8	-	3293	12	FSM	ENSMUSG00000036534.7	ENSMUST00000212270.2	3315	12	26	-4	9	0	multi-exon	FALSE	canonical	3	212	junction_11	48.4964001390441	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTTATCTTCT	NA	False	NA	0	True	AATAAA	-19	NA	96580141	96562547	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044104	chr8	+	653	4	FSM	ENSMUSG00000054400.17	ENSMUST00000034342.13	667	4	14	0	-7	0	multi-exon	FALSE	canonical	3	233	junction_3	21.1397466609439	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCTGCAGATCTCCTT	4806	False	NA	10	True	ATTAAA	-22	NA	104977506	104990079	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_104977728_104983916_104984076_104988105_104988202_104989902
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044112	chr8	+	597	1	ISM	ENSMUSG00000031875.8	ENSMUST00000034343.5	1616	5	6482	0	2035	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGAGTGCGCCTGACT	NA	False	NA	13	True	ATTAAA	-15	NA	105073707	105074304	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_105073700_105074300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044118	chr8	-	1816	20	FSM	ENSMUSG00000031878.19	ENSMUST00000034349.10	1808	20	-4	-4	-4	4	multi-exon	FALSE	canonical	3	645	junction_15	52.7352662859429	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGTTGTCTGGAATGGT	3329	False	NA	NA	False	AATAAA	-23	NA	105261273	105237655	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044161	chr8	+	3384	10	ISM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	27314	0	-12118	0	3prime_fragment	FALSE	canonical	3	206	junction_8	80.3768899898749	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	False	NA	38	True	AATAAA	-21	NA	106390524	106409554	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406702_106406892_106408066
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044174	chr8	+	1250	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212634.2	678	3	-1	-571	-1	1	multi-exon	FALSE	canonical	0	0	junction_1	13	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGGTCCTTCTGTGTCC	NA	False	NA	12	True	ATTAAA	-18	NA	106427778	106430126	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_106427919_106428805_106429029_106429239
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044193	chr8	+	183	1	Intergenic	novelGene_344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTAAAGTCAACTG	NA	False	NA	NA	False	NA	NA	NA	106530966	106531149	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_106531000_106531100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044210	chr8	+	1291	1	Genic_Genomic	ENSMUSG00000008450.9	novel	NA	NA	NA	NA	18129	1072	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGGTCTCTTTATTCCTA	1487	False	NA	28	True	AATAAA	-15	NA	106605743	106607034	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr8_+_106605700_106607000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044239	chr8	+	1913	16	FSM	ENSMUSG00000031901.13	ENSMUST00000034375.11	1860	16	-31	-22	-31	1	multi-exon	FALSE	canonical	3	148	junction_9	22.4047613987146	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCTGACATAATTTTTCT	NA	False	NA	34	True	AATAAA	-34	NA	106738107	106780473	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106758329_106758374_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044248	chr8	+	2739	6	FSM	ENSMUSG00000031903.8	ENSMUST00000034377.8	2706	6	-33	0	-33	0	multi-exon	FALSE	canonical	3	107	junction_2	8.49941174435031	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCCTTGTCCTGCTCTGA	6164	False	NA	14	True	AATAAA	-20	NA	106876997	106891347	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_106877246_106881499_106881657_106886794_106886914_106887212_106887312_106887715_106887941_106889456
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044266	chr8	+	2309	18	FSM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	63	1100	-24	-1100	multi-exon	FALSE	canonical	3	978	junction_13	68.9507622326015	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	1882	False	NA	26	True	AATAAA	-27	NA	106937630	106978326	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044268	chr8	+	1333	9	NNC	ENSMUSG00000060098.12	novel	2277	10	NA	NA	2	1183	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	361.786884781635	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTTTAAACTTTTGGGT	1908	False	NA	NA	False	AATAAA	-14	NA	106937656	106965874	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106965627
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044321	chr8	-	1554	6	FSM	ENSMUSG00000003849.9	ENSMUST00000003947.9	1553	6	0	-1	0	1	multi-exon	FALSE	canonical	3	129	junction_5	9.8264947972306	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTGGCGCATGCCTTTA	NA	False	NA	-1	True	AATAAA	-19	NA	108129838	108114855	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_108115757_108117676_108117779_108118753_108118868_108119272_108119404_108119479_108119645_108129697
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044331	chr8	+	2936	24	FSM	ENSMUSG00000031930.12	ENSMUST00000166615.3	4314	24	-4	1382	-4	0	multi-exon	FALSE	canonical	3	576	junction_9	55.7196601685668	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACCTGTTGCAAAGCCAGA	NA	False	NA	11	True	AATAAA	-22	NA	108162992	108283845	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044340	chr8	+	212	1	Intergenic	novelGene_345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCAGGCCATCAAGCTTG	NA	False	NA	NA	False	NA	NA	NA	108317902	108318114	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_108317900_108318100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044359	chr8	-	1452	11	FSM	ENSMUSG00000003657.10	ENSMUST00000003754.8	1431	11	-9	-12	-5	12	multi-exon	FALSE	canonical	3	153	junction_9	44.1960405466372	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTCGTGGGCCACATTT	7607	False	NA	0	True	AATAAA	-34	NA	110894847	110869157	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110881284_110881375_110883551_110883629_110894675
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044376	chr8	-	172	1	Intergenic	novelGene_346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTCGTCTGTTCATGAT	8951	False	NA	-1	True	NA	NA	NA	111249187	111249015	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_-_111249000_111249200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044380	chr8	+	309	1	ISM	ENSMUSG00000010936.12	ENSMUST00000034190.11	3069	19	101491	0	74510	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTCTGCCTGCTCCTTC	NA	False	NA	16	True	AATAAA	-20	NA	111446721	111447030	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_111446700_111447000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044386	chr8	+	202	1	Intergenic	novelGene_347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTCAGGAATCTGATAC	NA	False	NA	NA	False	NA	NA	NA	111489874	111490076	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_111489900_111490100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044391	chr8	+	2752	19	FSM	ENSMUSG00000031753.17	ENSMUST00000034203.17	2737	19	-12	-3	-2	3	multi-exon	TRUE	canonical	3	332	junction_8	32.668367302671	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGTTGGGTCCAGGAA	9616	False	NA	16	True	AATAAA	-21	NA	111573653	111608862	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044423	chr8	-	640	1	Genic_Genomic	ENSMUSG00000033596.6	novel	NA	NA	NA	NA	28611	3	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGTCTTCCGCCTGTTT	NA	False	NA	-6	True	AATAAA	-20	NA	111998212	111997572	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr8_-_111997600_111998200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044433	chr8	-	1282	7	FSM	ENSMUSG00000031954.7	ENSMUST00000034432.7	1178	7	-83	-21	-83	21	multi-exon	FALSE	canonical	3	1827	junction_5	79.8013157786261	1612	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGCCGTGCTCCTTCCCTG	NA	False	NA	-2	True	AATAAA	-36	NA	112581006	112495101	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_112495420_112505882_112506042_112557501_112557622_112566989_112567118_112568414_112568623_112571725_112571844_112580775
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044445	chr8	+	547	1	ISM	ENSMUSG00000031950.8	ENSMUST00000034428.8	1677	4	11983	380	11618	-380	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTGGTGTTTTGCCTGC	NA	False	NA	10	True	AATATA	-15	NA	112679317	112679864	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_112679300_112679900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044454	chr8	-	315	2	NNC	ENSMUSG00000031949.18	novel	3159	10	NA	NA	29	-20231	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACAGGATTCTGGGATTC	NA	False	NA	-1	True	AATAAA	-23	NA	112718905	112718415	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr8_-_112718638_112718812
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044464	chr8	-	2201	16	FSM	ENSMUSG00000031948.15	ENSMUST00000164470.3	2189	16	-12	0	-3	0	multi-exon	FALSE	canonical	3	76	junction_15	556.875793053432	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737910	112720074	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112735113_112735172_112737841
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044487	chr8	-	224	1	ISM	ENSMUSG00000014633.16	ENSMUST00000155260.2	1612	2	4783	833	4783	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTCCCTTTCTTTAAC	NA	False	NA	-5	True	AATAAA	-15	NA	117616480	117616256	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_-_117616300_117616500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044488	chr8	-	539	3	FSM	ENSMUSG00000014633.16	ENSMUST00000078589.7	523	3	-1	-15	-1	0	multi-exon	FALSE	canonical	3	30	junction_1	157.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTCCCTTTCTTTAAC	NA	False	NA	-5	True	AATAAA	-15	NA	117648179	117616256	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_117616599_117637866_117637974_117648089
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044513	chr8	+	1903	12	ISM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	102740	0	102740	0	3prime_fragment	FALSE	canonical	3	117	junction_1	25.4749917882532	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTTCTGTACCTGATCTGT	NA	False	NA	11	True	AATAAA	-23	NA	118327769	118361881	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044530	chr8	+	589	1	Genic_Genomic	ENSMUSG00000031839.8	novel	NA	NA	NA	NA	3096	7	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGGTGTGGTCCTTCCCA	NA	False	NA	NA	False	AATAAA	-25	NA	120075079	120075668	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr8_+_120075100_120075700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044540	chr8	+	1969	10	FSM	ENSMUSG00000024266.9	ENSMUST00000098361.4	1926	10	-41	-2	-41	2	multi-exon	FALSE	canonical	3	9	junction_8	9.71571210608852	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGCGTGTTGGGATG	4240	False	NA	9	True	AATAAA	-14	NA	120339444	120343665	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120342916_120343147_120343269_120343352
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044544	chr8	-	1662	4	FSM	ENSMUSG00000031827.14	ENSMUST00000034285.14	1596	4	-58	-8	-58	8	multi-exon	FALSE	canonical	3	203	junction_1	12.9185482500507	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGGTTGTCTGCTTCGTG	NA	False	NA	NA	False	AGTAAA	-22	NA	120567341	120535952	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_120537095_120549392_120549551_120566880_120566964_120567062
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044547	chr8	-	1145	1	Genic_Genomic	ENSMUSG00000031827.14	novel	NA	NA	NA	NA	12359	8	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGGTTGTCTGCTTCGTG	1559	False	NA	NA	False	AGTAAA	-22	NA	120537097	120535952	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr8_-_120536000_120537100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044551	chr8	+	3293	14	FSM	ENSMUSG00000031826.21	ENSMUST00000144458.8	3726	14	438	-5	-16	0	multi-exon	FALSE	canonical	3	816	junction_3	215.032734538435	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8811	False	NA	39	True	AATAAA	-21	NA	120637536	120684299	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044560	chr8	-	160	1	ISM	ENSMUSG00000031821.12	ENSMUST00000146526.8	3662	4	7559	2629	4787	282	mono-exon	FALSE	NA	NA	NA	NA	NA	246	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGAACGGGTTTAATTTC	NA	False	NA	93	True	AATACA	-20	NA	121308160	121308000	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_-_121308000_121308200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044568	chr8	-	227	1	ISM	ENSMUSG00000043687.17	ENSMUST00000123927.9	844	4	25664	0	25535	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCGGGTCCTGGTTTTTG	NA	False	NA	-1	True	AATAAA	-13	NA	121335567	121335340	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_-_121335300_121335600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044586	chr8	+	1008	4	NIC	ENSMUSG00000031818.13	novel	745	5	NA	NA	-21	0	intron_retention	FALSE	canonical	3	8115	junction_1	513.621347773716	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121395025	121400946	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_+_121395095_121396047_121396122_121399463_121400092_121400709
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044596	chr8	+	2847	9	FSM	ENSMUSG00000041515.11	ENSMUST00000047737.10	2847	9	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_1	7.56637297521078	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAATGTTTGTTTCTTTTTT	NA	False	NA	18	True	ATTAAA	-22	NA	121463096	121483433	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_121463149_121466555_121466731_121470444_121470629_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044603	chr8	+	202	1	Intergenic	novelGene_348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGCTGAAGTGCACCATCA	NA	False	NA	NA	False	NA	NA	NA	121872452	121872654	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_121872500_121872700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044607	chr8	-	1107	7	FSM	ENSMUSG00000031809.11	ENSMUST00000183280.2	959	7	-100	-48	-15	0	multi-exon	FALSE	canonical	2	4	junction_4	3.09569593683445	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAGCCACTGACAAAAACG	NA	False	NA	NA	False	AATAAA	-22	NA	122268708	122257518	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_122257781_122258436_122258654_122260433_122260471_122262161_122262309_122266605_122266747_122267267_122267320_122268457
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044611	chr8	+	1753	4	FSM	ENSMUSG00000031812.17	ENSMUST00000034270.17	2532	4	71	708	-45	6	multi-exon	FALSE	canonical	3	2350	junction_2	129.422649571944	330	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGTCTCATTGTCATCG	9916	False	NA	22	True	AATAAA	-22	NA	122317170	122324791	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_122317304_122320228_122320285_122322724_122322832_122323334
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044615	chr8	+	186	1	Intergenic	novelGene_349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTGACAGGTAAAAACCC	824	False	NA	NA	False	NA	NA	NA	122439060	122439246	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_122439100_122439200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044623	chr8	-	1642	3	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20958	-712	3528	712	intron_retention	FALSE	canonical	3	94	junction_1	2	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCCTCCCCAACTGACT	NA	False	NA	NA	False	AATAAA	-18	NA	122650685	122642152	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_-_122643247_122644726_122644883_122650293
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044643	chr8	-	155	1	Genic_Genomic	ENSMUSG00000006519.12	novel	NA	NA	NA	NA	7976	1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGACAAGAAATTCTCCATA	6648	False	NA	NA	False	AATAAA	-19	NA	123151668	123151513	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr8_-_123151500_123151700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044648	chr8	+	1704	15	FSM	ENSMUSG00000049482.17	ENSMUST00000116412.8	3066	15	17	1345	17	3	multi-exon	FALSE	canonical	3	114	junction_5	16.7624458787116	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTACAGTACTTGTGGGAA	8879	False	NA	17	True	AATAAA	-19	NA	123202898	123208486	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208137_123208209_123208269_123208334
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044657	chr8	-	913	5	FSM	ENSMUSG00000006589.9	ENSMUST00000006764.9	849	5	-59	-5	-40	3	multi-exon	FALSE	canonical	0	0	junction_3	617.095414016342	824	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTCCTCAGTTTGTTGC	NA	False	NA	-2	True	AATAAA	-20	NA	123303688	123301370	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123303253_123303361_123303491
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044691	chr8	+	898	5	NIC	ENSMUSG00000000740.13	novel	780	6	NA	NA	89	0	intron_retention	FALSE	canonical	3	17818	junction_4	2909.59597710747	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829177	123831983	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr8_+_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044709	chr8	+	552	1	FSM	ENSMUSG00000069862.7	ENSMUST00000139165.2	399	1	-105	-48	-105	48	mono-exon	FALSE	NA	NA	NA	NA	NA	1963	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGCCTACATTTCAGCC	NA	False	NA	NA	False	AATAAA	-44	NA	123933256	123933808	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_123933300_123933800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044762	chr8	+	201	1	Intergenic	novelGene_350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGCCGGGCGTGGTTGCA	NA	False	NA	NA	False	NA	NA	NA	124700682	124700883	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_124700700_124700900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044773	chr8	+	204	1	ISM	ENSMUSG00000031979.18	ENSMUST00000034460.11	2825	18	31038	0	16596	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGAGTTATGTATCCAG	NA	False	NA	29	True	AATAAA	-19	NA	125278543	125278747	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr8_+_125278500_125278700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044787	chr8	+	2964	16	FSM	ENSMUSG00000031985.10	ENSMUST00000034466.10	2984	16	20	0	-19	0	multi-exon	FALSE	canonical	3	573	junction_6	36.0101220337961	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAATGGTCTTATTAAC	5140	False	NA	34	True	AATAAA	-25	NA	125589791	125616796	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044795	chr8	+	1584	1	Genic_Genomic	ENSMUSG00000056820.8	novel	NA	NA	NA	NA	19563	3	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCTGGTTAAGCTTTTA	NA	False	NA	12	True	AATAAA	-17	NA	125759350	125760934	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr8_+_125759400_125760900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044800	chr8	+	1125	5	FSM	ENSMUSG00000031851.15	ENSMUST00000034313.13	1155	5	30	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	22.4388056723169	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGAGTCCTTGTGTGGG	NA	False	NA	23	True	AATAAA	-31	NA	126460971	126474974	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126471974_126472185_126474436
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044813	chr8	+	107	1	Intergenic	novelGene_351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGTCTTGCAGATAGC	252	False	NA	NA	False	AATAAA	-35	NA	127093824	127093931	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr8_+_127093800_127093900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044881	chr9	+	676	1	FSM	ENSMUSG00000074516.7	ENSMUST00000213318.2	480	1	-54	-142	-54	142	mono-exon	FALSE	NA	NA	NA	NA	NA	1887	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCCAGTCTCAGTGAAG	-4	True	NA	NA	False	AATAAA	-39	NA	7751671	7752347	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_7751700_7752300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044890	chr9	-	445	1	ISM	ENSMUSG00000053110.14	ENSMUST00000086580.12	4115	8	72145	0	33378	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCAACTTTTTTACATT	NA	False	NA	-6	True	AATAAA	-22	NA	7932444	7931999	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_-_7932000_7932400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044939	chr9	+	1195	7	NIC	ENSMUSG00000031939.17	novel	1148	7	NA	NA	1	1	combination_of_known_junctions	FALSE	canonical	3	29	junction_6	198.555407884046	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTAAGTGCTTAGCCC	9117	False	NA	6	True	AATAAA	-17	NA	15217554	15223401	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223113
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044944	chr9	+	1434	7	NIC	ENSMUSG00000031939.17	novel	2818	9	NA	NA	0	1	intron_retention	FALSE	canonical	3	69	junction_1	217.881275010038	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTAAGTGCTTAGCCC	9118	False	NA	6	True	AATAAA	-17	NA	15217555	15223401	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044957	chr9	+	352	1	ISM	ENSMUSG00000058173.13	ENSMUST00000045620.10	954	3	39422	0	24050	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTTCTCTTGTTTG	NA	False	NA	11	True	AATAAA	-19	NA	15456204	15456556	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_+_15456200_15456600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044958	chr9	+	1174	1	FSM	ENSMUSG00000090602.4	ENSMUST00000164523.4	852	1	0	-322	0	322	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGGAAAAGGACATCTGAA	NA	False	NA	4	True	AATAAA	-33	NA	16941340	16942514	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_16941300_16942500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044979	chr9	-	1882	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086459.6	2086	3	207	-3	207	0	multi-exon	TRUE	canonical	3	69	junction_2	12	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTTGCACTTATTTAAC	NA	False	NA	-1	True	ATTAAA	-21	NA	20553895	20549081	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_20550495_20553319_20553393_20553499
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044985	chr9	+	471	5	FSM	ENSMUSG00000084786.10	ENSMUST00000129414.9	2114	5	1471	172	-32	15	multi-exon	FALSE	canonical	3	1046	junction_4	63.2114507031756	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGAGAGTTGTGTGT	NA	False	NA	33	True	AATAAA	-30	NA	20556084	20558088	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917_20556956_20557911
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000044990	chr9	+	462	5	FSM	ENSMUSG00000084786.10	ENSMUST00000161486.8	794	5	-31	363	-18	0	multi-exon	FALSE	canonical	3	14	junction_3	472.738828530088	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGCTGTCATACTTGT	NA	False	NA	18	True	AATAAA	-15	NA	20556098	20558073	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556897_20556956_20557911
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045010	chr9	-	1082	5	ISM	ENSMUSG00000038742.8	ENSMUST00000043726.8	1582	6	1501	-2	1501	2	3prime_fragment	FALSE	canonical	3	59	junction_4	28.1646942110153	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTCTGTCTTCCTGTGT	NA	False	NA	-3	True	NA	NA	NA	20789522	20785101	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789344
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045036	chr9	-	247	1	ISM	ENSMUSG00000043895.7	ENSMUST00000054197.7	6394	2	10584	3590	7781	2298	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGGTTATGTGTGTGT	2252	False	NA	0	True	AATAAA	-20	NA	20877493	20877246	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_-_20877200_20877500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045085	chr9	+	1931	10	FSM	ENSMUSG00000002820.7	ENSMUST00000065005.5	5951	10	0	4020	0	7	multi-exon	FALSE	canonical	3	441	junction_8	36.048663953599	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCGTTGTTGACATTTCA	8634	False	NA	28	True	GATAAA	-20	NA	21176588	21185048	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184086_21184207_21184549
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045094	chr9	-	1238	2	FSM	ENSMUSG00000096472.3	ENSMUST00000215619.2	1423	2	136	49	-19	7	multi-exon	FALSE	canonical	3	236	junction_1	0	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTGTGTGATTATTTT	NA	False	NA	NA	False	TATAAA	-25	NA	21202468	21199754	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_21200629_21202104
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045123	chr9	-	1222	3	FSM	ENSMUSG00000032180.12	ENSMUST00000214285.2	1213	3	-7	-2	-7	0	multi-exon	FALSE	canonical	2	30	junction_2	267.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGCCTGGTGACTGGGCT	NA	False	NA	-5	True	AATAAA	-19	NA	21421490	21418850	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_21419688_21420226_21420411_21421289
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045173	chr9	+	100	1	ISM	ENSMUSG00000003402.15	ENSMUST00000216344.2	2228	18	11317	0	8555	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	20	True	AATAAA	-16	NA	21925418	21925518	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_+_21925400_21925500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045191	chr9	-	893	3	FSM	ENSMUSG00000013822.8	ENSMUST00000013966.8	888	3	0	-5	0	3	multi-exon	FALSE	canonical	3	357	junction_2	52.5	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCTGTACTTCTTGGATA	7944	False	NA	-3	True	AATAAA	-20	NA	22028468	22024281	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_22024976_22025103_22025240_22028405
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045206	chr9	+	199	1	Intergenic	novelGene_352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAAAGGCCTTGCC	NA	False	NA	NA	False	NA	NA	NA	22053189	22053388	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_22053200_22053400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045208	chr9	+	692	2	FSM	ENSMUSG00000010607.9	ENSMUST00000123680.2	695	2	0	3	0	-3	multi-exon	FALSE	canonical	3	566	junction_1	0	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTTTCTTCTAAGATTT	NA	False	NA	41	True	AATAAA	-41	NA	22068141	22069651	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_22068210_22069027
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045229	chr9	-	1399	1	Intergenic	novelGene_353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATTGTATCTTGATTTA	NA	False	NA	NA	False	AATAAA	-20	NA	25163705	25162306	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_-_25162300_25163700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045234	chr9	+	2267	13	NNC	ENSMUSG00000001833.18	novel	2533	14	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	484.465255032116	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAGTGTCTTGTATATTC	NA	False	NA	21	True	AATAAA	-21	NA	25163943	25219866	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_+_25163996_25176689_25176793_25188890_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045256	chr9	+	967	6	NIC	ENSMUSG00000035443.11	novel	918	8	NA	NA	-3	0	intron_retention	FALSE	canonical	3	323	junction_5	122.182486470034	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAAGTGTTTTCTTCT	NA	False	NA	34	True	AATAAA	-15	NA	26911002	26918630	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045265	chr9	-	2001	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	4336	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_8	53.8573056789884	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27033510	27008679	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27033348
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045296	chr9	+	381	1	Intergenic	novelGene_354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGCAGACATAGGATTCA	NA	False	NA	NA	False	AATAAA	-44	NA	33641089	33641470	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_33641100_33641500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045306	chr9	-	320	1	Genic_Genomic	ENSMUSG00000032040.16	novel	NA	NA	NA	NA	51270	4	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTAGCCCAGTAGGGTG	NA	False	NA	1	True	AATAAA	-26	NA	35036019	35035699	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr9_-_35035700_35036000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045307	chr9	-	1278	6	FSM	ENSMUSG00000032040.16	ENSMUST00000034539.12	1274	6	0	-4	0	4	multi-exon	FALSE	canonical	3	621	junction_4	33.1083071146804	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTAGCCCAGTAGGGTG	NA	False	NA	1	True	AATAAA	-26	NA	35087357	35035699	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_35036141_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045324	chr9	+	1080	1	NIC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	1036	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAGGTTCATATTATTT	NA	False	NA	3	True	AATAAA	-18	NA	35127230	35128310	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_35127200_35128300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045339	chr9	+	1821	7	FSM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_6	10.6052921799554	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTAATTTTTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	35179160	35187261	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35183924_35183997_35184143_35184763_35184862_35186359
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045355	chr9	-	158	1	ISM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	9421	0	9120	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGAACCTTGTTTTA	NA	False	NA	51	True	ATTAAA	-17	NA	35472273	35472115	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_-_35472100_35472300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045369	chr9	-	2766	18	FSM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	38	3063	-8	19	multi-exon	FALSE	canonical	3	1637	junction_6	106.765013773661	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTTTCTGGGCAAGAA	NA	False	NA	0	True	NA	NA	NA	36678937	36643702	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045372	chr9	-	294	1	ISM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	34976	3066	22164	16	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTGCTGTTTCTGGGCAA	NA	False	NA	-3	True	NA	NA	NA	36643999	36643705	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_-_36643700_36644000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045382	chr9	+	1741	10	FSM	ENSMUSG00000032118.17	ENSMUST00000034630.15	1794	10	56	-3	-24	3	multi-exon	FALSE	canonical	3	83	junction_5	5.61743318211757	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGGTTTTTGGAGAGTG	NA	False	NA	21	True	AATAAA	-21	NA	36744035	36790223	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_36744208_36754957_36755314_36761642_36761743_36772107_36772195_36774792_36774962_36778991_36779264_36780143_36780225_36781776_36781853_36787592_36787659_36789861
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045384	chr9	+	1048	4	NNC	ENSMUSG00000032121.10	novel	2619	4	NA	NA	4	-1502	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	19.2527054375915	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCTGGCTGCAGCTTTGT	NA	False	NA	29	True	AATAAA	-35	NA	37119522	37134494	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_+_37119637_37129561_37129673_37130497_37130601_37133774
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045394	chr9	+	449	1	FSM	ENSMUSG00000090136.5	ENSMUST00000160052.2	444	1	-1	-4	-1	4	mono-exon	FALSE	NA	NA	NA	NA	NA	381	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGGGCAAGCTCAGTCG	NA	False	NA	NA	False	NA	NA	NA	37164216	37164665	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_37164200_37164700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045398	chr9	-	692	5	FSM	ENSMUSG00000001948.11	ENSMUST00000002013.11	696	5	0	4	0	-4	multi-exon	TRUE	canonical	2	6	junction_2	1.92028643696715	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGTTGTGGTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	37525018	37514589	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_37514783_37517088_37517167_37518912_37518984_37523131_37523315_37524851
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045423	chr9	+	2405	9	FSM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	-7	-4	-7	4	multi-exon	FALSE	canonical	3	3928	junction_3	6050.21958150074	2523	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTCCTGACTGAGTTAAA	2160	False	NA	14	True	AATAAA	-24	NA	40712272	40716500	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045433	chr9	+	195	1	Intergenic	novelGene_355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACAGTAGGGTTCATCT	3021	False	NA	NA	False	NA	NA	NA	41220243	41220438	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_41220200_41220400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045444	chr9	+	2887	16	FSM	ENSMUSG00000032135.16	ENSMUST00000034650.15	2989	16	99	3	0	0	multi-exon	FALSE	canonical	3	21	junction_3	5.20085463062456	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGATGCTGTGTTCCATT	7	False	NA	16	True	AATAAA	-18	NA	44045957	44054021	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_44046054_44047814_44047946_44048034_44048243_44048335_44048407_44048514_44048603_44050131_44050312_44050454_44050577_44050696_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44052571_44052690_44053080
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045462	chr9	+	1389	1	FSM	ENSMUSG00000049932.4	ENSMUST00000052686.4	1384	1	-4	-1	-4	1	mono-exon	FALSE	NA	NA	NA	NA	NA	695	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTAATGTTGAATGCTG	5249	False	NA	35	True	ATTAAA	-31	NA	44245986	44247375	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_44246000_44247400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045466	chr9	-	1582	14	FSM	ENSMUSG00000032126.17	ENSMUST00000077353.15	1605	14	14	9	14	4	multi-exon	FALSE	canonical	3	699	junction_4	86.0870620274656	603	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTCTGAGACCTTTCTG	1422	False	NA	0	True	AATAAA	-24	NA	44255511	44247644	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045493	chr9	+	1068	5	FSM	ENSMUSG00000009927.10	ENSMUST00000080300.9	1280	5	-19	231	-19	2	multi-exon	FALSE	canonical	3	5317	junction_4	3059.10970504492	1941	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGCATCTGTTTCCTAA	NA	False	NA	96	True	AATAAA	-21	NA	44318416	44321493	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045507	chr9	+	1383	1	FSM	ENSMUSG00000094437.3	ENSMUST00000178509.3	357	1	-83	-943	-83	943	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACAAAGAAGAGAGATAAGA	NA	False	NA	NA	False	AATAAA	-39	NA	44375456	44376839	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_44375500_44376800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045512	chr9	+	985	1	ISM	ENSMUSG00000032097.11	ENSMUST00000170489.2	6065	14	34855	0	34850	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTGTATGTATGTTC	NA	False	NA	17	True	AATAAA	-18	NA	44551043	44552028	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_+_44551000_44552000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045552	chr9	-	781	1	ISM	ENSMUSG00000003131.8	ENSMUST00000172450.3	6873	6	18956	2456	18242	-2456	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACTGATGTCTGTTTCTT	NA	False	NA	-3	True	TATAAA	-21	NA	45877393	45876612	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_-_45876600_45877400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045570	chr9	+	1439	10	ISM	ENSMUSG00000032076.21	ENSMUST00000085909.9	2126	11	257712	440	257596	2	3prime_fragment	FALSE	canonical	3	105	junction_8	78.429019572548	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTGTTTGACACCTCT	1846	False	NA	5	True	AAAACA	-23	NA	47699266	47761887	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674_47740708_47759464_47759597_47761569
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045571	chr9	+	1406	9	ISM	ENSMUSG00000032076.21	ENSMUST00000114547.8	4444	10	257712	2791	257596	2	3prime_fragment	FALSE	canonical	3	143	junction_7	61.313614923604	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTGTTTGACACCTCT	1846	False	NA	5	True	AAAACA	-23	NA	47699266	47761887	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47759464_47759597_47761569
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045572	chr9	+	1311	8	ISM	ENSMUSG00000032076.21	ENSMUST00000152459.8	1784	12	257758	20856	257596	-4717	internal_fragment	FALSE	canonical	3	173	junction_7	55.5356109323797	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAAGTGTATTTGTCTAC	1846	False	NA	NA	False	AATAAA	-30	NA	47699266	47741029	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045614	chr9	-	748	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-17	37	-17	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	2607	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTTCGCTTAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	50256285	50255537	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_50255500_50256300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045620	chr9	-	1092	6	FSM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	-46	0	-2	0	multi-exon	FALSE	canonical	3	95	junction_5	16.1294761229248	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7913	False	NA	NA	False	AATAAA	-18	NA	50439997	50432916	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439856
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045650	chr9	+	205	1	Intergenic	novelGene_356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATAATGTTTTCTTTTTGG	NA	False	NA	NA	False	NA	NA	NA	50540680	50540885	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_50540700_50540900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045712	chr9	-	1285	11	NIC	ENSMUSG00000061559.16	novel	1290	11	NA	NA	5	2	combination_of_known_junctions	FALSE	canonical	3	105	junction_9	332.004593341719	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTGTGAACGTGCTGT	5428	False	NA	-1	True	AATAAA	-21	NA	54641796	54624440	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637941_54638670_54638722_54641652
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045737	chr9	+	212	1	Intergenic	novelGene_357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACCCTCTGACCTCATCA	NA	False	NA	NA	False	NA	NA	NA	55023983	55024195	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_55024000_55024200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045741	chr9	+	2112	7	FSM	ENSMUSG00000032309.16	ENSMUST00000034859.15	2112	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	369.828526331987	615	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	11	True	AATAAA	-18	NA	55116208	55131717	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045770	chr9	+	1025	1	FSM	ENSMUSG00000118653.2	ENSMUST00000239472.2	988	1	-30	-7	-30	7	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAACATATGGTAAACAAG	NA	False	NA	NA	False	AATAAA	-40	NA	56344710	56345735	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_56344700_56345700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045808	chr9	-	1439	7	FSM	ENSMUSG00000063849.7	ENSMUST00000085709.6	2744	7	-3	1308	-2	0	multi-exon	FALSE	canonical	3	27	junction_2	42.49607825043	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347382	57321243	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_57322010_57322368_57322538_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045820	chr9	+	707	1	FSM	ENSMUSG00000074280.7	ENSMUST00000098689.7	409	1	-50	-248	-50	248	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTCCAGCAATGTTCA	NA	False	NA	NA	False	NA	NA	NA	57391195	57391902	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_57391200_57391900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045842	chr9	+	2345	9	FSM	ENSMUSG00000040188.11	ENSMUST00000045791.11	2340	9	-2	-3	-2	3	multi-exon	TRUE	canonical	3	243	junction_4	15.3927742788621	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCCCTGATGTCAATGGT	NA	False	NA	16	True	AATAAA	-18	NA	57468223	57496081	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_57468394_57484475_57484545_57484921_57485021_57486715_57486834_57488066_57488196_57488772_57488933_57490134_57490237_57494362_57494484_57494704
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045850	chr9	+	3357	7	FSM	ENSMUSG00000038957.14	ENSMUST00000043990.14	5708	7	15	2336	0	-1240	multi-exon	FALSE	canonical	3	211	junction_3	27.6189347288333	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTCCTAGAGTGAAGTG	NA	False	NA	16	True	AATAAA	-26	NA	57615837	57657446	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_57615983_57620663_57620845_57623230_57623551_57634468_57634805_57647172_57647327_57651867_57652086_57655443
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045855	chr9	-	1866	13	FSM	ENSMUSG00000032316.9	ENSMUST00000065330.8	2496	13	718	-88	-21	3	multi-exon	FALSE	canonical	3	232	junction_10	47.1024297556813	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGTGGAAAGCCAAGTGT	9786	False	NA	-8	True	AATAAA	-19	NA	57672425	57657903	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045885	chr9	+	1916	7	FSM	ENSMUSG00000032333.7	ENSMUST00000034883.7	1984	7	72	-4	44	4	multi-exon	FALSE	canonical	3	127	junction_1	85.7729561108861	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCAGCTGGCTGTGGG	NA	False	NA	15	True	AATAAA	-26	NA	58160518	58169807	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_58160683_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045897	chr9	+	515	1	ISM	ENSMUSG00000032336.18	ENSMUST00000176250.2	4531	5	23259	2329	389	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAATAATACTCTTTAT	NA	False	NA	NA	False	AATAAA	-17	NA	58559647	58560162	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_+_58559600_58560200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045913	chr9	-	2466	16	FSM	ENSMUSG00000025235.9	ENSMUST00000026265.8	2518	16	52	0	-7	0	multi-exon	TRUE	canonical	3	108	junction_2	13.5581054068119	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGATCACTGTCTGTCTT	NA	False	NA	-18	True	AATAAA	-2	NA	59260739	59229272	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_59230266_59230670_59230873_59231319_59231462_59232072_59232143_59234469_59234642_59234738_59234892_59235862_59235932_59237700_59237756_59240762_59240891_59243646_59243701_59247093_59247167_59248369_59248482_59249770_59249835_59251342_59251423_59253082_59253135_59260692
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045952	chr9	-	1285	1	ISM	ENSMUSG00000051705.14	ENSMUST00000051039.5	3682	2	12896	2210	12869	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCGGGTGTGTGGTGCAT	NA	False	NA	-21	True	AATAAA	-16	NA	59645036	59643751	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_-_59643800_59645000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045960	chr9	+	187	1	Intergenic	novelGene_358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCACAGAAAAGCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	60684794	60684981	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_60684800_60685000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045971	chr9	-	494	3	NNC	ENSMUSG00000007892.9	novel	499	3	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	2	1164	junction_2	5542	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGACTGGTCTCACTTGT	NA	False	NA	-27	True	AATAAA	-15	NA	61821821	61820564	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_-_61820804_61821169_61821242_61821638
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045972	chr9	-	382	3	NNC	ENSMUSG00000007892.9	novel	499	3	NA	NA	266	1	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_2	6096.5	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGACTGGTCTCACTTGT	NA	False	NA	-27	True	AATAAA	-15	NA	61821558	61820564	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_-_61820804_61821169_61821245_61821490
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045981	chr9	-	3091	22	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	-2	3	combination_of_known_junctions	FALSE	canonical	3	131	junction_5	37.7146464629211	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	0	True	AATAAA	-21	NA	61854058	61824558	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045985	chr9	+	200	1	Intergenic	novelGene_359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGTATATGGAAAAGCACA	5055	False	NA	NA	False	NA	NA	NA	61952056	61952256	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_61952100_61952300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045990	chr9	+	204	1	Intergenic	novelGene_360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATTGTTAGTTGAGCA	NA	False	NA	NA	False	NA	NA	NA	62233711	62233915	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_62233700_62233900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000045993	chr9	+	2106	7	FSM	ENSMUSG00000032249.15	ENSMUST00000085519.13	2113	7	-3	10	-3	-10	multi-exon	FALSE	canonical	3	492	junction_5	26.6546848081575	469	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGGAGATGGCTTCC	NA	False	NA	15	True	AATAAA	-15	NA	62248607	62286084	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046003	chr9	+	212	1	Intergenic	novelGene_361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTATGAGGTGATATGTGT	NA	False	NA	NA	False	TTTAAA	-13	NA	62620931	62621143	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_62620900_62621100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046006	chr9	-	2181	1	ISM	ENSMUSG00000032244.10	ENSMUST00000034775.10	6785	2	17930	3	17930	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCTTGAAGTTTGTGTCT	NA	False	NA	-8	True	AGTAAA	-15	NA	62701286	62699105	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_-_62699100_62701300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046008	chr9	+	805	3	ISM	ENSMUSG00000032246.15	ENSMUST00000034777.14	864	5	10540	3	10510	-3	3prime_fragment	FALSE	canonical	3	41	junction_1	28	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTGGAATTGGTGTTTC	2991	False	NA	6	True	AATAAA	-18	NA	62775925	62783200	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_+_62776100_62778547_62778737_62782758
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046038	chr9	+	1675	9	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	intron_retention	FALSE	canonical	3	17440	junction_1	1299.57868172727	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	38	True	AATAAA	-20	NA	64080655	64085801	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_64080716_64082105_64082278_64082475_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046039	chr9	+	1484	9	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	intron_retention	FALSE	canonical	3	16882	junction_3	1494.01890362037	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	38	True	AATAAA	-20	NA	64080655	64085801	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085300_64085504
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046044	chr9	+	1434	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_7	6006.71232769261	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	38	True	AATAAA	-20	NA	64080655	64085801	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64084960_64085087_64085178_64085300_64085504
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046046	chr9	+	1362	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	canonical	2	841	junction_6	5901.11588317554	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	38	True	AATAAA	-20	NA	64080655	64085801	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084323_64084602_64084760_64085002_64085087_64085178_64085300_64085504
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046055	chr9	+	1534	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	35	-147	at_least_one_novel_splicesite	FALSE	canonical	3	419	junction_1	6030.49106982258	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	38	True	AATAAA	-20	NA	64080709	64085801	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_+_64080912_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046068	chr9	-	2448	11	FSM	ENSMUSG00000004936.9	ENSMUST00000005066.9	2436	11	-11	-1	-11	1	multi-exon	TRUE	canonical	3	469	junction_6	51.6454257412987	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTGTGGCACACCTTT	NA	False	NA	-12	True	AATAAA	-39	NA	64160924	64093050	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_64094081_64094572_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101109_64111712_64111765_64112392_64112471_64119865_64120013_64121680_64121892_64160494
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046080	chr9	+	1237	8	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	0	11	combination_of_known_junctions	FALSE	canonical	3	479	junction_1	696.204344855674	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTTTCTCACCATGAT	9543	False	NA	25	True	AATAAA	-25	NA	64188862	64212085	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046082	chr9	+	1248	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	-26	-11	0	11	multi-exon	FALSE	canonical	3	540	junction_1	675.401679425976	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTTTCTCACCATGAT	9543	False	NA	25	True	AATAAA	-25	NA	64188862	64212085	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046089	chr9	+	1130	7	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	-1	2	combination_of_known_splicesites	FALSE	canonical	3	80	junction_2	1027.99578468656	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAGGATTTGAGTTTCT	9568	False	NA	16	True	AATAAA	-16	NA	64188887	64212076	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_64188930_64195395_64195526_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046105	chr9	+	199	1	Intergenic	novelGene_362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCTGACATGTTATTTTA	NA	False	NA	NA	False	NA	NA	NA	64223919	64224118	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_64223900_64224100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046168	chr9	+	208	1	Intergenic	novelGene_363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGACCTGCAAATGGGGA	NA	False	NA	NA	False	NA	NA	NA	65716772	65716980	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_65716800_65717000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046169	chr9	-	3399	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	0	-1400	0	3	multi-exon	TRUE	canonical	3	144	junction_4	28.3474229673332	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTTGGAAGTTCTCTGTT	NA	False	NA	-8	True	AATAAA	-31	NA	65792338	65739037	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046174	chr9	+	991	4	FSM	ENSMUSG00000040204.7	ENSMUST00000045802.7	2188	4	59	1138	-24	-1138	multi-exon	FALSE	canonical	3	794	junction_3	40.4722126896961	372	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTTGTCATTTATCAGAA	NA	False	NA	NA	False	ATTAAA	-25	NA	65797577	65809410	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046200	chr9	-	1224	6	FSM	ENSMUSG00000053040.14	ENSMUST00000169282.8	5205	6	55	3926	-23	364	multi-exon	FALSE	canonical	2	9	junction_1	3.03315017762062	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGTAGCCCTTGTCTTT	NA	False	NA	-1	True	AGTAAA	-17	NA	66741953	66726201	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_66726744_66729515_66729644_66735018_66735142_66735954_66736029_66740440_66740612_66741767
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046235	chr9	+	2399	11	FSM	ENSMUSG00000011958.18	ENSMUST00000034754.12	2464	11	5	60	5	2	multi-exon	FALSE	canonical	3	26	junction_9	104.017354321286	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTCTTAATTACCTTC	NA	False	NA	19	True	AATAAA	-19	NA	69896752	69915539	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69911587_69911624_69914345
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046257	chr9	-	1581	9	FSM	ENSMUSG00000032218.8	ENSMUST00000034742.8	1531	9	-42	-8	-42	8	multi-exon	FALSE	canonical	3	1324	junction_2	68.4557338723353	544	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTGTATATTTGTATAG	NA	False	NA	0	True	AATAAA	-22	NA	70328871	70314965	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046263	chr9	+	229	1	Intergenic	novelGene_364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTGCTACCTCTGAGCAA	NA	False	NA	NA	False	NA	NA	NA	70356098	70356327	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_70356100_70356300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046278	chr9	+	196	1	Intergenic	novelGene_365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTGTTAGATTTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	71904992	71905188	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_71905000_71905200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046292	chr9	+	1887	1	ISM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	85619	1	2126	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	AATAAA	-26	NA	72655246	72657133	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_+_72655200_72657100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046302	chr9	+	1468	1	NIC	ENSMUSG00000089865.3	novel	4383	16	NA	NA	53619	-2381	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACTGCTTTCTGATGTC	6978	False	NA	NA	False	NA	NA	NA	72919752	72921220	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_72919800_72921200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046313	chr9	+	1174	4	FSM	ENSMUSG00000092622.9	ENSMUST00000173734.9	1228	4	59	-5	-53	5	multi-exon	FALSE	canonical	3	51	junction_3	87.8116671569837	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTGTGTATTTGAATGGA	NA	False	NA	31	True	AATAAA	-18	NA	73009738	73011725	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_73009958_73010111_73010292_73010497_73011172_73011624
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046344	chr9	+	633	3	NNC	ENSMUSG00000098894.2	novel	581	2	NA	NA	-7119	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	3	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGCAGACTTGACAGTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76219739	76228128	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_+_76219851_76226917_76227020_76227708
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046366	chr9	+	123	1	Intergenic	novelGene_366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78153759	78153882	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_78153800_78153900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046397	chr9	-	612	4	NNC	ENSMUSG00000060461.6	novel	619	3	NA	NA	-617	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_3	84702.6028735573	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78276076	78274333	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_-_78274577_78275002_78275186_78275266_78275383_78276006
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046434	chr9	+	175	1	Intergenic	novelGene_367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTAAATTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	78383419	78383594	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_78383400_78383600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046441	chr9	-	1822	7	NIC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	intron_retention	FALSE	canonical	3	9075	junction_6	1931.40898482602	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	98	True	ATTAAA	-18	NA	78388953	78385734	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_-_78386141_78386239_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046442	chr9	-	1827	7	NIC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	intron_retention	FALSE	canonical	3	9075	junction_6	2286.64497074256	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	98	True	ATTAAA	-18	NA	78388953	78385734	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387971_78388920
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046443	chr9	-	1739	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5001.31346829643	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	98	True	ATTAAA	-18	NA	78388953	78385734	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387520_78387703_78387792_78387971_78388920
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046446	chr9	-	1741	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	5015.73746180103	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	98	True	ATTAAA	-18	NA	78388953	78385734	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387788_78387971_78388920
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046447	chr9	-	1814	7	NIC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	intron_retention	FALSE	canonical	3	9075	junction_6	2285.92845834393	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	98	True	ATTAAA	-18	NA	78388953	78385734	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387431_78387522_78387703_78387792_78387971_78388920
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046473	chr9	+	192	1	Intergenic	novelGene_368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTTACAGCAGTGACGT	NA	False	NA	NA	False	NA	NA	NA	78424738	78424930	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_78424700_78424900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046474	chr9	-	1900	11	FSM	ENSMUSG00000049624.15	ENSMUST00000052441.12	3236	11	14	1322	0	-1304	multi-exon	FALSE	canonical	3	37	junction_3	5.61782876207526	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAGAAGAGGCTGGTCC	NA	False	NA	NA	False	NA	NA	NA	78495309	78445091	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_78445582_78448180_78448272_78460215_78460364_78464738_78464872_78466292_78466452_78467969_78468089_78478303_78478391_78481931_78482020_78484311_78484546_78485792_78485990_78495155
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046482	chr9	-	1146	3	NIC	ENSMUSG00000032330.8	novel	659	4	NA	NA	-28	1	intron_retention	FALSE	canonical	3	5621	junction_2	538.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCTCCCTTTTCACTT	NA	False	NA	-13	True	AATAAA	-17	NA	79667020	79662686	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_-_79663644_79665771_79665862_79666921
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046491	chr9	+	1155	1	FSM	ENSMUSG00000079225.4	ENSMUST00000183511.2	775	1	-75	-305	-61	14	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACTTCAAGGACTGAGTC	NA	False	NA	NA	False	NA	NA	NA	81559589	81560744	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_81559600_81560700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046494	chr9	+	713	2	FSM	ENSMUSG00000079225.4	ENSMUST00000055820.7	638	2	-60	-15	-60	15	multi-exon	FALSE	canonical	3	2455	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTCAAGGACTGAGTCT	NA	False	NA	NA	False	NA	NA	NA	81559590	81560745	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_81559913_81560354
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046504	chr9	-	870	6	FSM	ENSMUSG00000066456.15	ENSMUST00000161796.9	862	6	-2	-6	-2	6	multi-exon	FALSE	canonical	3	36	junction_1	6.24179461373089	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACCTGTTTGTGTCTTTA	NA	False	NA	0	True	AATAAA	-24	NA	83028660	82991994	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_82992483_82993086_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046508	chr9	+	553	1	FSM	ENSMUSG00000058838.10	ENSMUST00000078766.10	467	1	-38	-48	-38	48	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTACATTATTACATTATT	NA	False	NA	NA	False	AATAAA	-26	NA	83291674	83292227	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_83291700_83292200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046511	chr9	+	2709	21	FSM	ENSMUSG00000038379.16	ENSMUST00000188445.7	2711	21	7	-5	6	5	multi-exon	FALSE	canonical	3	211	junction_10	27.9819584732735	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTCGACAACATTCTTTA	NA	False	NA	5	True	AATAAA	-20	NA	83716748	83751551	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046526	chr9	+	889	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	-27	-64	-27	64	mono-exon	FALSE	NA	NA	NA	NA	NA	614	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACACATCCTTGGGTGGA	NA	False	NA	NA	False	CATAAA	-35	NA	84306009	84306898	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_84306000_84306900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046533	chr9	-	2077	13	FSM	ENSMUSG00000056131.14	ENSMUST00000070064.11	2666	13	-35	624	-20	0	multi-exon	FALSE	canonical	3	372	junction_7	43.7311070317483	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTTTCGATTGCTTACC	NA	False	NA	-2	True	ATTAAA	-20	NA	86453915	86437053	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046538	chr9	+	1236	3	FSM	ENSMUSG00000032417.11	ENSMUST00000185566.7	1054	3	-16	-166	-16	0	multi-exon	FALSE	canonical	3	38	junction_1	7	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACTTGTCTCAAGTCCAA	NA	False	NA	6	True	AATAAA	-19	NA	86454027	86456952	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_86454111_86454889_86455117_86456026
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046551	chr9	-	3101	28	FSM	ENSMUSG00000032422.19	ENSMUST00000165315.9	3109	28	7	1	7	-1	multi-exon	TRUE	canonical	3	141	junction_13	28.9754164757839	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTTTGTATTTACTGTC	NA	False	NA	-3	True	AATAAA	-39	NA	88320997	88258803	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046554	chr9	+	576	1	FSM	ENSMUSG00000066443.6	ENSMUST00000155008.2	481	1	-35	-60	-35	60	mono-exon	FALSE	NA	NA	NA	NA	NA	842	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATTATAAGCTACACTGT	NA	False	NA	NA	False	NA	NA	NA	88272854	88273430	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_88272900_88273400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046567	chr9	-	1338	4	FSM	ENSMUSG00000097195.11	ENSMUST00000190033.4	1408	4	72	-2	0	0	multi-exon	FALSE	canonical	3	405	junction_2	320.936476926856	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404944	88403102	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_88403502_88403702_88403770_88403970_88404435_88404536
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046568	chr9	-	1007	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239369.2	1678	5	671	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	300.420122495148	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404944	88403102	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046573	chr9	-	1270	3	NIC	ENSMUSG00000097195.11	novel	1408	4	NA	NA	0	1	intron_retention	FALSE	canonical	3	461	junction_1	364.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTCAATTCTTTTTGT	NA	False	NA	-8	True	AATAAA	-39	NA	88404944	88403103	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_-_88403502_88403970_88404435_88404536
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046576	chr9	-	938	4	NIC	ENSMUSG00000097195.11	novel	809	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	461	junction_1	319.66545011934	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404944	88403104	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046581	chr9	-	716	5	NIC	ENSMUSG00000097195.11	novel	809	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	468.898976326458	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404944	88403104	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536_88404682_88404903
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046583	chr9	-	676	5	NIC	ENSMUSG00000097195.11	novel	809	6	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	461	junction_1	309.579553588411	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404946	88403104	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536_88404640_88404903
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046587	chr9	-	664	5	NNC	ENSMUSG00000097195.11	novel	939	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	474.860176788915	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536_88404633_88404903
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046615	chr9	+	785	3	FSM	ENSMUSG00000066442.18	ENSMUST00000085256.8	816	3	13	18	13	-4	multi-exon	TRUE	canonical	3	175	junction_1	109	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAGAAATCAATAGAAATT	NA	False	NA	NA	False	AATAAA	-17	NA	89093222	89122275	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_89093365_89097261_89097524_89121894
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046630	chr9	-	1857	13	FSM	ENSMUSG00000062270.15	ENSMUST00000085248.12	1882	13	23	2	6	-2	multi-exon	FALSE	canonical	3	323	junction_10	2408.59367105002	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGTGGCCGTGTTATC	NA	False	NA	NA	False	AATAAA	-22	NA	89996745	89973719	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046636	chr9	+	2235	1	FSM	ENSMUSG00000096647.3	ENSMUST00000178436.3	871	1	-55	-1309	-55	1309	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTATTTTCATTTATACG	NA	False	NA	NA	False	AATACA	-25	NA	90000934	90003169	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_90000900_90003200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046649	chr9	-	3542	28	FSM	ENSMUSG00000032407.15	ENSMUST00000079659.12	7630	28	9	4079	0	1	multi-exon	TRUE	canonical	0	0	junction_13	184.18480907976	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTTGTTTTTTTGCCCA	8302	False	NA	0	True	AATAAA	-18	NA	95393938	95343029	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373317_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046674	chr9	+	763	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-46	-227	-46	227	mono-exon	FALSE	NA	NA	NA	NA	NA	1171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACCTGACACAAACACCAC	NA	False	NA	NA	False	NA	NA	NA	96777664	96778427	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_96777700_96778400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046691	chr9	+	1031	5	FSM	ENSMUSG00000032463.11	ENSMUST00000035038.8	1019	5	-10	-2	-10	2	multi-exon	FALSE	canonical	3	266	junction_2	16.8430252627015	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGGTTTGGTTTCATGTG	3534	False	NA	11	True	AATAAA	-25	NA	98868415	98884076	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_98868566_98874153_98874287_98874565_98874795_98881019_98881070_98883607
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046701	chr9	+	2617	18	FSM	ENSMUSG00000056267.15	ENSMUST00000093795.10	2606	18	-11	0	-11	0	multi-exon	TRUE	canonical	3	165	junction_10	72.0150887688172	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125483	99182457	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046703	chr9	+	1798	6	FSM	ENSMUSG00000056267.15	ENSMUST00000190715.7	1768	6	-28	-2	-9	2	multi-exon	FALSE	canonical	3	228	junction_1	56.4361586219332	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCTTGGTCATCATGT	NA	False	NA	9	True	NA	NA	NA	99125485	99146983	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046727	chr9	-	2835	12	FSM	ENSMUSG00000032468.12	ENSMUST00000185524.7	2820	12	-18	3	0	-3	multi-exon	TRUE	canonical	3	193	junction_11	21.8011297000487	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATAGTTTTTATGTGTGTG	NA	False	NA	-4	True	AATAAA	-25	NA	99450720	99400859	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046744	chr9	-	416	1	ISM	ENSMUSG00000032527.14	ENSMUST00000149322.8	2188	14	52430	0	3162	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTGTTGTTTTTTTAT	NA	False	NA	0	True	NA	NA	NA	100864500	100864084	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_-_100864100_100864500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046758	chr9	+	485	4	NNC	ENSMUSG00000035048.14	novel	589	3	NA	NA	7	0	at_least_one_novel_splicesite	TRUE	canonical	2	7	junction_1	700.743573324476	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCCCACTTGGTTTTCGT	NA	False	NA	17	True	AATAAA	-17	NA	102503501	102511441	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_+_102503546_102506690_102506777_102506961_102507088_102511212
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046770	chr9	-	1856	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	-1	3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	97.1596624119289	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTGAGTCAAATGATGAG	NA	False	NA	3	True	TATAAA	-34	NA	103079329	103066285	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_-_103066696_103066841_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046774	chr9	+	2253	12	ISM	ENSMUSG00000032555.11	ENSMUST00000035164.10	5224	28	28838	0	1324	0	3prime_fragment	FALSE	canonical	3	578	junction_1	51.941002768478	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGATTTGTTCATTT	2362	False	NA	14	True	AATAAA	-19	NA	103211251	103227627	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_+_103211379_103213010_103213158_103213262_103213366_103215378_103215572_103219126_103219348_103220746_103220896_103221123_103221236_103221989_103222154_103222940_103223079_103223882_103223973_103224125_103224288_103226980
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046783	chr9	-	1821	12	FSM	ENSMUSG00000032557.14	ENSMUST00000035166.12	2404	12	9	574	9	477	multi-exon	FALSE	canonical	3	388	junction_1	40.2171790110061	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGAATAAAAACATGCC	NA	False	NA	NA	False	NA	NA	NA	103940324	103924371	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046790	chr9	+	2475	5	FSM	ENSMUSG00000032567.17	ENSMUST00000035181.10	2755	5	-11	291	-11	0	multi-exon	FALSE	canonical	3	44	junction_3	8.45576726264388	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTATTTATTTATATG	NA	False	NA	NA	False	AATACA	-16	NA	105272579	105282666	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_105272865_105273743_105275058_105278674_105278886_105280594_105280791_105282197
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046794	chr9	+	200	1	Intergenic	novelGene_369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGCTAAATCTTGGGA	NA	False	NA	NA	False	NA	NA	NA	106045939	106046139	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_106045900_106046100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046811	chr9	+	196	1	Intergenic	novelGene_370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGAGGCAGGAGGATTGC	NA	False	NA	NA	False	NA	NA	NA	106122850	106123046	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_106122800_106123000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046817	chr9	+	795	4	FSM	ENSMUSG00000048758.15	ENSMUST00000150576.8	733	4	-62	0	-62	0	multi-exon	FALSE	canonical	3	2142	junction_1	1217.38161642108	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCTGTTGTCATAG	NA	False	NA	3	True	AATAAA	-19	NA	106306590	106308767	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_106306776_106307168_106307214_106307506_106307572_106308267
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046822	chr9	+	1048	3	FSM	ENSMUSG00000048758.15	ENSMUST00000213448.2	845	3	-23	-180	-6	0	multi-exon	FALSE	canonical	3	3966	junction_1	565.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCTGTTGTCATAG	NA	False	NA	3	True	AATAAA	-19	NA	106306730	106308767	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_106307214_106307506_106307572_106308267
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046852	chr9	+	1638	15	FSM	ENSMUSG00000041506.16	ENSMUST00000047721.10	1586	15	-51	-1	-51	1	multi-exon	FALSE	canonical	3	1203	junction_11	74.9465115388084	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGTTCCTCTGGTTTC	NA	False	NA	24	True	ATTAAA	-24	NA	106354416	106362624	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046861	chr9	+	174	1	NIC	ENSMUSG00000041506.16	novel	1586	15	NA	NA	785	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCCCTTGTTCCTCTGGT	NA	False	NA	21	True	ATTAAA	-21	NA	106362447	106362621	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_106362400_106362600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046864	chr9	-	1436	6	FSM	ENSMUSG00000040813.17	ENSMUST00000046735.11	1391	6	-39	-6	-27	0	multi-exon	TRUE	canonical	3	285	junction_5	67.9187750183997	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGGTTTTTGTCTG	7841	False	NA	0	True	AATAAA	-28	NA	106563153	106535944	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106563033
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046880	chr9	-	1535	11	NNC	ENSMUSG00000032579.15	novel	2192	11	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_9	53.3310416174295	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGAGCCAGTATTTTGTT	NA	False	NA	-23	True	AATAAA	-1	NA	107215549	107204901	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214237_107214578_107215479
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046923	chr9	+	168	1	Intergenic	novelGene_371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTTGAAAAAAAAGATTTAA	1672	False	NA	NA	False	NA	NA	NA	107589549	107589717	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_107589500_107589700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046984	chr9	-	1617	3	FSM	ENSMUSG00000039461.13	ENSMUST00000192886.6	1094	3	173	-696	3	0	multi-exon	TRUE	canonical	3	19	junction_2	5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGGTGTGGTTATTCAA	7288	False	NA	-2	True	ATTAAA	-13	NA	108183186	108180156	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_108181453_108182524_108182580_108182920
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000046988	chr9	+	1980	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	226	-9	-84	9	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTGTGTGTTGCTTTC	NA	False	NA	24	True	AATAAA	-24	NA	108183553	108215142	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047000	chr9	+	849	2	FSM	ENSMUSG00000063856.9	ENSMUST00000191997.2	787	2	30	-92	-3	-1	multi-exon	FALSE	canonical	3	37	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTGTGTGTCCTGTGTC	NA	False	NA	17	True	AATAAA	-17	NA	108216471	108217541	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_108216758_108216978
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047006	chr9	+	3602	22	FSM	ENSMUSG00000032612.15	ENSMUST00000035237.12	3662	22	41	19	-3	6	multi-exon	FALSE	canonical	3	580	junction_19	65.884562002066	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTGCAGTGTGTGGCAT	NA	False	NA	45	True	CATAAA	-2	NA	108225092	108269725	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047035	chr9	+	1694	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	708.88594988251	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1178	False	NA	25	True	AATAAA	-18	NA	108437667	108442772	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_+_108437861_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047038	chr9	+	1751	12	FSM	ENSMUSG00000019039.15	ENSMUST00000019183.14	1746	12	-6	1	-6	0	multi-exon	FALSE	canonical	3	83	junction_8	26.2473926292634	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAGAGTGAGGCGTGTT	NA	False	NA	14	True	AATAAA	-16	NA	108447078	108449972	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449064_108449139_108449317_108449385_108449497_108449591_108449661_108449749
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047048	chr9	-	1097	1	FSM	ENSMUSG00000064145.13	ENSMUST00000193923.2	3664	1	2572	-5	2572	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	9297	False	NA	NA	False	AATAAA	-20	NA	108481237	108480140	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_108480100_108481200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047105	chr9	+	959	1	ISM	ENSMUSG00000025647.17	ENSMUST00000112059.10	1910	6	18196	58	821	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGCTTCCCCTTTCTTCAG	NA	False	NA	13	True	AATAAA	-13	NA	108885828	108886787	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_+_108885800_108886800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047130	chr9	+	1142	7	FSM	ENSMUSG00000032478.15	ENSMUST00000200005.5	719	7	22	-445	0	0	multi-exon	FALSE	canonical	3	252	junction_1	126.972000413039	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTGCAAGCTTTCTCT	NA	False	NA	25	True	AATAAA	-32	NA	109661838	109672042	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047144	chr9	+	644	1	ISM	ENSMUSG00000032477.15	ENSMUST00000094324.8	3632	15	17673	0	4416	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCTGCCTAGTTCCTAA	NA	False	NA	28	True	AATAAA	-18	NA	109722319	109722963	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_+_109722300_109723000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047149	chr9	+	897	6	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	19	4	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	120.044325147006	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTTGGCTGGCTTTAG	NA	False	NA	NA	False	AAGAAA	-1	NA	109760886	109857193	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109856966
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047152	chr9	+	203	1	Intergenic	novelGene_372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCCATTGGTGGACTAGT	9060	False	NA	NA	False	NA	NA	NA	109905499	109905702	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_109905500_109905700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047158	chr9	-	194	2	Antisense	novelGene_ENSMUSG00000032481.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATTGTCTTTCCAATGG	NA	False	NA	NA	False	NA	NA	NA	109983357	109956257	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Antisense_chr9_-_109956431_109983336
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047172	chr9	+	242	1	Intergenic	novelGene_373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTATCTCTTTAATTAT	NA	False	NA	NA	False	NA	NA	NA	110301450	110301692	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_110301400_110301700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047188	chr9	+	213	1	Intergenic	novelGene_374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCCAAAACCCAAACTAAACA	354	False	NA	NA	False	NA	NA	NA	110766589	110766802	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_110766600_110766800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047193	chr9	-	764	1	Genic_Genomic	ENSMUSG00000032494.13	novel	NA	NA	NA	NA	4521	16	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTAAGTGGTAAGTTAAA	NA	False	NA	1	True	AGTAAA	-37	NA	110769418	110768654	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chr9_-_110768700_110769400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047209	chr9	-	853	2	Antisense	novelGene_ENSMUSG00000106234.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_1	0	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTTTCAGGAAATGAAGG	NA	False	NA	NA	False	NA	NA	NA	110808667	110798435	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Antisense_chr9_-_110799208_110808586
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047292	chr9	+	191	1	Intergenic	novelGene_375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTAGTTTGGGCTGGAG	1262	False	NA	NA	False	NA	NA	NA	119103758	119103949	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_119103800_119103900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047304	chr9	+	3122	18	FSM	ENSMUSG00000035769.10	ENSMUST00000215822.2	3134	18	16	-4	-2	4	multi-exon	FALSE	canonical	3	22	junction_2	17.3265002945415	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACCTCTCCTTGCTTCCC	NA	False	NA	24	True	AATAAA	-24	NA	119186650	119222399	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_119186774_119188297_119188381_119193562_119193644_119196554_119196642_119197137_119197267_119198685_119198752_119200981_119201055_119203365_119203485_119207309_119207392_119209051_119209093_119209649_119209766_119210567_119210684_119211319_119211394_119212402_119212500_119215384_119215444_119217746_119217835_119219495_119219591_119220806
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047327	chr9	+	1026	7	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	1	12	junction_2	2024.29310020944	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956850	119960625	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chr9_+_119956897_119957522_119957683_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047338	chr9	+	779	6	NIC	ENSMUSG00000032518.7	novel	1101	7	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	2080.75928449208	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956857	119960625	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_119956897_119957522_119957689_119958223_119958343_119959833_119959963_119960065_119960232_119960465
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047342	chr9	+	2186	5	NIC	ENSMUSG00000032518.7	novel	1599	6	NA	NA	3	0	intron_retention	FALSE	canonical	3	2998	junction_1	1134.17481015935	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956857	119960625	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047360	chr9	+	807	5	NIC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	1	0	intron_retention	FALSE	canonical	3	10044	junction_1	2963.91573766867	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400580	120403501	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402884_120403160
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047363	chr9	+	3535	15	FSM	ENSMUSG00000006932.18	ENSMUST00000007130.15	3623	15	88	0	2	0	multi-exon	FALSE	canonical	3	499	junction_2	74.0160283248135	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTCATTTTGTTTGTT	NA	False	NA	27	True	ATTAAA	-16	NA	120762553	120789573	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_120762705_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047367	chr9	+	967	1	FSM	ENSMUSG00000006932.18	ENSMUST00000215573.2	1292	1	325	0	325	0	mono-exon	FALSE	NA	NA	NA	NA	NA	355	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTCATTTTGTTTGTT	NA	False	NA	27	True	ATTAAA	-16	NA	120788606	120789573	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_120788600_120789600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047369	chr9	+	201	1	Intergenic	novelGene_376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCAGTTCCTGCCCCTTC	NA	False	NA	NA	False	NA	NA	NA	121198162	121198363	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_121198200_121198400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047380	chr9	-	1528	4	FSM	ENSMUSG00000038412.9	ENSMUST00000060251.8	2232	4	707	-3	-42	3	multi-exon	FALSE	canonical	3	2040	junction_3	82.3825763671475	741	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATGTCTTGTTTTTATT	NA	False	NA	0	True	ATTAAA	-16	NA	121686721	121677625	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_-_121678756_121679253_121679389_121681556_121681676_121686577
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047390	chr9	+	3090	7	FSM	ENSMUSG00000032540.17	ENSMUST00000156520.8	3157	7	67	0	-55	0	multi-exon	FALSE	canonical	3	74	junction_5	12.9925192151313	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGGTGAGCTGTGTGT	NA	False	NA	4	True	AATAAA	-17	NA	122180739	122210589	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chr9_+_122180905_122194200_122194287_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047416	chr9	+	207	1	Intergenic	novelGene_377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCCTGAAGTTGGCTGG	4951	False	NA	NA	False	NA	NA	NA	122986500	122986707	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chr9_+_122986500_122986700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047430	chr9	-	337	2	ISM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	10642	620	10642	-620	internal_fragment	FALSE	canonical	3	133	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGGTGTCTGATTTGTG	NA	False	NA	NA	False	NA	NA	NA	124034127	124033607	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chr9_-_124033817_124033999
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047440	chrM	+	123	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	526	306	526	-306	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAAGCAAAAGAATCAAACA	-2	True	NA	-76	True	ATTAAA	-1	NA	595	718	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrM_+_600_700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047442	chrM	+	956	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	1	0	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATATGTCTGATAAAAGA	-2	True	NA	-18	True	NA	NA	NA	2750	3706	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrM_+_2800_3700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047456	chrM	+	1627	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	-842	-1	-842	1	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	-12	True	NA	NA	False	NA	NA	NA	7764	9391	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrM_+_7800_9400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047458	chrM	+	233	1	FSM	ENSMUSG00000064360.1	ENSMUST00000082411.1	348	1	116	-1	116	1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGTAATTAGTTTAAAAAAA	114	False	NA	NA	False	AGTAAA	-1	NA	9574	9807	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrM_+_9600_9800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047473	chrUn_MU069435v1	+	313	4	Intergenic	novelGene_378	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	60	junction_1	126.053780409615	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCATGTAGCAGTTGTA	NA	False	NA	NA	False	NA	NA	NA	0	7357	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrUn_MU069435v1_+_73_3311_3351_3591_3670_7233
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047478	chrUn_MU069435v1	+	484	2	Intergenic	novelGene_379	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	358	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCATGTAGCAGTTGTA	NA	False	NA	NA	False	NA	NA	NA	3309	7357	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrUn_MU069435v1_+_3670_7233
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047484	chrUn_MU069435v1	+	495	2	Intergenic	novelGene_381	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	30	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCCAGCTATTTATTTCT	NA	False	NA	NA	False	AATAAA	-18	NA	14904	22060	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrUn_MU069435v1_+_15016_21676
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047487	chrUn_MU069435v1	+	382	1	Intergenic	novelGene_380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTCCAGCTATTTAT	NA	False	NA	NA	False	AATAAA	-14	NA	14904	15286	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrUn_MU069435v1_+_14900_15300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047540	chrX	+	2914	10	NIC	ENSMUSG00000000134.18	novel	2943	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	87.2919042249043	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTCCCGTTCTTGTT	NA	False	NA	25	True	AATAAA	-36	NA	7630197	7641441	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chrX_+_7630238_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047551	chrX	+	1120	1	ISM	ENSMUSG00000031156.19	ENSMUST00000115660.12	3094	4	8880	465	411	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATGTGTAGCTTTCTGA	NA	False	NA	6	True	AATAAA	-18	NA	7759146	7760266	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_+_7759100_7760300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047567	chrX	+	1742	6	FSM	ENSMUSG00000031158.12	ENSMUST00000033498.10	2381	6	-42	681	-42	-681	multi-exon	FALSE	canonical	3	843	junction_3	44.2511016812011	622	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAGAGCAAAAGCTGGG	1147	False	NA	NA	False	NA	NA	NA	7765553	7773909	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772439_7772519_7772631_7772726
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047606	chrX	-	1191	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115617.10	1152	7	-30	-9	-3	0	multi-exon	FALSE	canonical	3	391	junction_1	339.486213105759	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATAATGCTTTTTCCT	6532	False	NA	-7	True	ATTAAA	-25	NA	8011965	8008597	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_8009195_8009485_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047632	chrX	-	1833	13	FSM	ENSMUSG00000031169.14	ENSMUST00000089402.10	1839	13	8	-2	-2	0	multi-exon	TRUE	canonical	3	57	junction_2	6.61857655055493	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCGGTTTTTTGGTTTTT	1996	False	NA	0	True	AATAAA	-19	NA	8072732	8060086	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047664	chrX	+	843	1	FSM	ENSMUSG00000083123.2	ENSMUST00000122268.2	528	1	-152	-163	-152	163	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGTATAAAATTGATGT	NA	False	NA	NA	False	AATAAA	-26	NA	8946130	8946973	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_8946100_8947000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047667	chrX	-	1129	2	Intergenic	novelGene_382	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	34	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGGTGGTTGCGTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	9198865	9195213	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_-_9196165_9198687
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047689	chrX	+	130	1	Intergenic	novelGene_383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAAAAGCGGGAGTTGAAG	NA	False	NA	NA	False	NA	NA	NA	10529060	10529190	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_+_10529100_10529200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047693	chrX	+	1986	2	FSM	ENSMUSG00000008035.13	ENSMUST00000008179.7	2019	2	45	-12	-33	12	multi-exon	FALSE	canonical	3	265	junction_1	0	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGTGTGTTGCTCTTTA	1524	False	NA	NA	False	AATAAA	-27	NA	10583673	10585941	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_10583944_10584225
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047698	chrX	+	1942	2	FSM	ENSMUSG00000008035.13	ENSMUST00000115524.8	2022	2	92	-12	14	12	multi-exon	FALSE	canonical	3	75	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGTGTGTTGCTCTTTA	1571	False	NA	NA	False	AATAAA	-27	NA	10583720	10585941	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_10583944_10584222
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047704	chrX	+	2354	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	-28	-2	-28	2	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	454	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGGTTACAGTTTTATTT	NA	False	NA	86	True	AATAAA	-21	NA	12454011	12483290	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047724	chrX	+	1329	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-29	-90	-29	90	mono-exon	FALSE	NA	NA	NA	NA	NA	5358	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTGAACACAACTCTTGA	NA	False	NA	NA	False	AATAAA	-45	NA	13068780	13070109	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_13068800_13070100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047752	chrX	+	3395	3	ISM	ENSMUSG00000037315.16	ENSMUST00000043693.7	2472	10	50641	-2043	50641	0	3prime_fragment	FALSE	canonical	3	148	junction_2	8	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCAGTGTGATGATT	NA	False	NA	9	True	ATTAAA	-17	NA	20377406	20386178	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_+_20377730_20378974_20379093_20383224
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047755	chrX	-	347	1	FSM	ENSMUSG00000084830.3	ENSMUST00000117527.2	174	1	-57	-116	-57	116	mono-exon	FALSE	NA	NA	NA	NA	NA	565	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATTAGATAAACAATTTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	20447610	20447263	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_20447300_20447600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047813	chrX	-	633	7	FSM	ENSMUSG00000001134.10	ENSMUST00000001162.10	636	7	9	-6	0	0	multi-exon	FALSE	canonical	3	21	junction_5	225.323039705713	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	-8	True	ATTAAA	-20	NA	20828230	20818161	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827873_20828026_20828172
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047840	chrX	+	219	1	Intergenic	novelGene_384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCCATGGAAGGAGTTACA	NA	False	NA	NA	False	NA	NA	NA	21338590	21338809	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_+_21338600_21338800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047849	chrX	+	771	1	Intergenic	novelGene_385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCCGTGTTCGACTGTCT	NA	False	NA	NA	False	NA	NA	NA	27803785	27804556	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_+_27803800_27804600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047852	chrX	+	738	1	FSM	ENSMUSG00000079297.5	ENSMUST00000112099.2	1350	1	768	-156	768	156	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGACCTCTACTTTTTTTT	NA	False	NA	NA	False	TATAAA	-28	NA	32943891	32944629	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_32943900_32944600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047861	chrX	+	1212	1	ISM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	6662	0	6662	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGAGGCTTTCATTTT	8330	False	NA	NA	False	AATAAA	-15	NA	35868520	35869732	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_+_35868500_35869700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047905	chrX	-	2353	10	FSM	ENSMUSG00000036572.17	ENSMUST00000076265.13	2344	10	-9	0	-9	0	multi-exon	FALSE	canonical	3	68	junction_3	69.0213779729436	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	False	NA	-1	True	AATAAA	-24	NA	36373984	36355330	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_36356315_36359174_36359476_36360510_36360672_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047907	chrX	-	2402	11	NIC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	132	junction_3	55.9360348970143	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	False	NA	-1	True	AATAAA	-24	NA	36373994	36355330	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chrX_-_36356315_36359174_36359476_36360510_36360672_36362718_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047973	chrX	-	2110	1	Genic_Genomic	ENSMUSG00000016534.16	novel	NA	NA	NA	NA	21539	5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTCACATTTTTTCCCA	NA	False	NA	-17	True	AATAAA	-24	NA	37510488	37508378	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chrX_-_37508400_37510500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047975	chrX	-	3576	9	FSM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	33	-5	-7	5	multi-exon	FALSE	canonical	3	893	junction_3	45.9604109533411	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTCACATTTTTTCCCA	NA	False	NA	-17	True	AATAAA	-24	NA	37545298	37508378	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047979	chrX	-	1713	1	Genic_Genomic	ENSMUSG00000031095.16	novel	NA	NA	NA	NA	31198	1659	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTGGGGAAGATATTTA	NA	False	NA	-19	True	AATAAA	-20	NA	37622204	37620491	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chrX_-_37620500_37622200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047982	chrX	-	747	2	ISM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	0	38516	0	-38216	5prime_fragment	FALSE	canonical	3	600	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCTCAGCATGCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	37665073	37660666	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_-_37661356_37665015
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000047999	chrX	+	450	1	FSM	ENSMUSG00000080896.6	ENSMUST00000117155.2	174	1	-30	-246	-30	246	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGTACATATATACAATG	NA	False	NA	NA	False	ATTAAA	-24	NA	38058663	38059113	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_38058700_38059100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048001	chrX	-	186	1	ISM	ENSMUSG00000037475.16	ENSMUST00000124458.8	3506	9	19069	1	11385	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTGTATATTGTTACT	NA	False	NA	0	True	AATAAA	-25	NA	40884054	40883868	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_-_40883900_40884100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048004	chrX	-	2783	23	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	4	32192	4	-3775	5prime_fragment	FALSE	canonical	3	149	junction_4	23.7647300993345	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTTGATGTAGCGAT	NA	False	NA	NA	False	AATAAA	-43	NA	41000774	40916059	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_-_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048010	chrX	+	2522	15	FSM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	-15	0	-15	0	multi-exon	FALSE	canonical	3	320	junction_8	49.1840047833705	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACTACCTTCTGTATTA	NA	False	NA	20	True	AATAAA	-24	NA	47345723	47371330	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048033	chrX	+	719	1	FSM	ENSMUSG00000082192.3	ENSMUST00000121891.3	340	1	-122	-257	-122	257	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGGCAATCTGCAAATT	NA	False	NA	NA	False	NA	NA	NA	48749714	48750433	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_48749700_48750400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048049	chrX	-	2268	8	FSM	ENSMUSG00000055653.14	ENSMUST00000069360.14	2216	8	-52	0	-23	0	multi-exon	FALSE	canonical	3	233	junction_6	17.9398086582293	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTTGGTCCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-17	NA	51702850	51361302	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_51361832_51403713_51403874_51454598_51454720_51476985_51477112_51485949_51486084_51517316_51518012_51671673_51671836_51702509
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048059	chrX	+	979	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	-30	-67	-30	67	mono-exon	FALSE	NA	NA	NA	NA	NA	3314	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCACGGACCACAACTGACA	NA	False	NA	NA	False	AATAAA	-44	NA	51987434	51988413	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_51987400_51988400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048101	chrX	-	999	8	FSM	ENSMUSG00000054626.12	ENSMUST00000114810.2	984	8	-14	-1	-4	1	multi-exon	FALSE	canonical	3	140	junction_7	54.1238187409392	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGTGGCAAATAGTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	52799677	52785713	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798188_52799598
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048102	chrX	-	1026	8	NNC	ENSMUSG00000054626.12	novel	1032	8	NA	NA	-1	1	at_least_one_novel_splicesite	TRUE	canonical	3	47	junction_7	85.2532840949813	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGTGGCAAATAGTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	52799674	52785713	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798218_52799598
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048122	chrX	-	2321	10	FSM	ENSMUSG00000031134.17	ENSMUST00000140384.8	2139	10	0	-182	0	182	multi-exon	FALSE	canonical	3	61	junction_8	6.66296193358442	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGGTGTTGGGTTCTTT	NA	False	NA	-5	True	AATAAA	-16	NA	56438341	56428707	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_56429922_56430492_56430582_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048151	chrX	-	3812	28	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	828	0	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_27	79.0220750182634	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	59223621	59101315	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048175	chrX	+	122	1	Intergenic	novelGene_386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATATTATCCTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	63542398	63542520	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_+_63542400_63542500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048188	chrX	+	805	5	FSM	ENSMUSG00000062170.13	ENSMUST00000069731.12	799	5	-6	0	-6	0	multi-exon	FALSE	canonical	3	455	junction_2	146.787899705664	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805438	67848173	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_67805838_67807537_67807616_67815650_67815748_67847210_67847300_67848031
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048197	chrX	+	838	5	NIC	ENSMUSG00000062170.13	novel	842	6	NA	NA	15	-6	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	363.963167779378	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAATCTGGATTCTTTTT	NA	False	NA	21	True	ATTAAA	-21	NA	67805459	67848167	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chrX_+_67805838_67812561_67812700_67815650_67815748_67847210_67847300_67848031
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048234	chrX	+	882	1	ISM	ENSMUSG00000015217.12	ENSMUST00000072699.13	1571	5	3865	12	2000	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACGGCCTAAATTTCTGAC	NA	False	NA	NA	False	AATAAA	-33	NA	70603388	70604270	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_+_70603400_70604300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048243	chrX	+	235	1	Intergenic	novelGene_387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAATGCACTCCTAAAAAC	NA	False	NA	NA	False	NA	NA	NA	71631924	71632159	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_+_71631900_71632200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048254	chrX	-	2610	5	NNC	ENSMUSG00000050424.10	novel	2287	2	NA	NA	-2596	0	at_least_one_novel_splicesite	FALSE	canonical	1	35	junction_1	20.9568008054665	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTTCTGGCGATGTTC	NA	False	NA	0	True	AATAAA	-21	NA	72083305	72077586	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chrX_-_72077934_72078769_72080775_72080892_72080952_72081548_72081672_72083229
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048270	chrX	-	1655	9	FSM	ENSMUSG00000057836.13	ENSMUST00000074619.6	1645	9	-2	-8	-2	6	multi-exon	FALSE	canonical	3	586	junction_7	340.598531081683	446	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATGAGTCATTTAATTGC	NA	False	NA	1	True	AATAAA	-24	NA	72140703	72129892	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138566_72138689_72140586
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048393	chrX	-	1210	8	NNC	ENSMUSG00000002015.6	novel	1219	8	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_7	1017.04273182957	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTTGTGTCTAACTGAG	NA	False	NA	-13	True	AATAAA	-17	NA	72759820	72729783	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758535_72759771
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048400	chrX	+	224	1	Intergenic	novelGene_388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAGAGGTGTACTGACAT	NA	False	NA	NA	False	NA	NA	NA	72791916	72792140	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_+_72791900_72792100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048410	chrX	-	1303	13	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	2	205	junction_10	516.424862771816	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830228	72822568	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72825903_72825916_72826280_72826323_72830133
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048465	chrX	-	1425	11	FSM	ENSMUSG00000031387.15	ENSMUST00000116578.8	1418	11	-5	-2	-5	2	multi-exon	FALSE	canonical	3	1767	junction_7	141.190120050944	1062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGCGCGCCTCTGTG	NA	False	NA	0	True	AATAAA	-20	NA	72974461	72965724	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048481	chrX	-	1316	11	NNC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_10	590.512192930849	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	72974461	72965726	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974426
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048489	chrX	-	1675	3	FSM	ENSMUSG00000031393.17	ENSMUST00000033770.13	1739	3	68	-4	-10	4	multi-exon	FALSE	canonical	3	119	junction_2	51.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGAGTTTCGTGGCTTCG	NA	False	NA	NA	False	AATAAA	-26	NA	73129228	73078889	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_73080101_73080587_73080939_73129115
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048491	chrX	-	1817	4	FSM	ENSMUSG00000031393.17	ENSMUST00000100750.10	10538	4	29	8692	-28	4	multi-exon	FALSE	canonical	3	104	junction_3	52.083266666624	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGAGTTTCGTGGCTTCG	NA	False	NA	NA	False	AATAAA	-26	NA	73129246	73078889	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_73080101_73080587_73080939_73123514_73123639_73129115
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048510	chrX	+	838	6	NIC	ENSMUSG00000008682.14	novel	799	7	NA	NA	-3	0	intron_retention	FALSE	canonical	3	2920	junction_1	2570.04695676947	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314459	73316741	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chrX_+_73314481_73314584_73314631_73315265_73315514_73315784_73315924_73316277_73316441_73316520
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048512	chrX	+	763	7	FSM	ENSMUSG00000008682.14	ENSMUST00000151702.8	648	7	-3	-112	-3	2	multi-exon	FALSE	canonical	3	57	junction_1	3469.80780767786	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTTCTGATTCTTAA	NA	False	NA	14	True	AATAAA	-24	NA	73314459	73316743	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_73314485_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048514	chrX	+	861	6	FSM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	-6	0	-3	0	multi-exon	FALSE	canonical	3	7516	junction_1	832.521615335001	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314459	73316741	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048531	chrX	+	1814	10	FSM	ENSMUSG00000009995.18	ENSMUST00000069722.13	1851	10	37	0	-16	0	multi-exon	FALSE	canonical	3	70	junction_7	76.3282385490455	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTTCTGTGTAGGA	NA	False	NA	10	True	AATAAA	-23	NA	73326339	73333757	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332267_73332321_73332710_73332789_73332904
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048560	chrX	+	221	1	ISM	ENSMUSG00000019087.14	ENSMUST00000019231.12	2189	10	7380	24	988	8	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGTCACTCATTTCTG	5427	False	NA	22	True	AATAAA	-27	NA	73348082	73348303	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_+_73348100_73348300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048564	chrX	+	2440	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	226	0	-32	0	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	6174	False	NA	15	True	AATAAA	-16	NA	73348829	73355468	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048624	chrX	+	1695	7	NNC	ENSMUSG00000031403.15	novel	610	3	NA	NA	-1812	0	at_least_one_novel_splicesite	FALSE	canonical	3	454	junction_1	848.656143558744	26	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74147742	74153383	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chrX_+_74147807_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048643	chrX	+	446	1	NIC	ENSMUSG00000031198.5	novel	2562	5	NA	NA	7207	426	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTATCTTGGTGTATG	8217	False	NA	NA	False	AATACA	-23	NA	74437914	74438360	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chrX_+_74437900_74438400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048663	chrX	+	1551	6	NNC	ENSMUSG00000031197.12	novel	1595	6	NA	NA	11	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	760.710299654211	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGCCTGACAATTTTT	NA	False	NA	9	True	ATTAAA	-15	NA	74557933	74578543	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577523
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048670	chrX	-	3135	16	FSM	ENSMUSG00000016382.16	ENSMUST00000114059.10	3149	16	5	9	5	0	multi-exon	FALSE	canonical	3	263	junction_13	28.3953047762008	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTCTCTACTCTCTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	74918783	74829268	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_74830506_74834567_74834693_74834890_74835015_74837194_74837329_74837782_74837898_74838912_74838992_74839939_74840136_74843000_74843097_74844107_74844251_74845181_74845348_74846130_74846213_74848745_74848879_74849356_74849487_74859689_74859854_74870478_74870560_74918653
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048673	chrX	+	218	1	Intergenic	novelGene_389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACCCATGAAGATGATT	NA	False	NA	NA	False	NA	NA	NA	74928041	74928259	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_+_74928000_74928300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048676	chrX	+	1535	1	Genic_Genomic	ENSMUSG00000025246.14	novel	NA	NA	NA	NA	150237	2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACATAGTGACTGTGTTTT	NA	False	NA	14	True	AATAAA	-22	NA	76705056	76706591	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chrX_+_76705100_76706600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048680	chrX	+	495	1	FSM	ENSMUSG00000081049.2	ENSMUST00000118723.2	402	1	-11	-82	-11	82	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGAAAGGCTGGGGAAA	NA	False	NA	NA	False	NA	NA	NA	78238641	78239136	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_78238600_78239100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048747	chrX	+	1290	5	FSM	ENSMUSG00000043929.17	ENSMUST00000113911.9	1227	5	-63	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	15.1224171348366	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGCCTGGCATGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	93278532	93297673	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020_93296733_93297545
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048764	chrX	+	196	1	Intergenic	novelGene_390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAGTATACCGAGTAATGG	NA	False	NA	NA	False	NA	NA	NA	94427759	94427955	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_+_94427800_94428000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048791	chrX	+	651	1	FSM	ENSMUSG00000082035.2	ENSMUST00000118924.2	621	1	0	-30	0	30	mono-exon	FALSE	NA	NA	NA	NA	NA	274	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAGGAAAAATATCATTC	NA	False	NA	NA	False	AATAAA	-44	NA	95528464	95529115	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_95528500_95529100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048836	chrX	-	1122	6	FSM	ENSMUSG00000046032.17	ENSMUST00000156473.8	1114	6	2	-10	-2	10	multi-exon	FALSE	canonical	3	192	junction_2	126.702170462861	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGTTTCTCTTATTGGTA	NA	False	NA	-1	True	NA	NA	NA	100266157	100141381	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100259088_100259185_100265867
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048843	chrX	+	201	1	Intergenic	novelGene_391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGATAAGAAGAGGGGA	NA	False	NA	NA	False	NA	NA	NA	100176774	100176975	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_+_100176800_100177000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048884	chrX	+	1657	1	ISM	ENSMUSG00000031314.19	ENSMUST00000118878.8	7210	38	66639	5	8826	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAATCGAGAGTGATTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	100642978	100644635	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_+_100643000_100644600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048895	chrX	+	1287	5	Intergenic	novelGene_392	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	43	junction_1	6.49519052838329	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAGAAAGAACAGATTC	9258	False	NA	NA	False	AAAAAG	-38	NA	100739441	100748793	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_+_100739530_100743172_100743346_100744532_100744567_100747004_100747088_100747884
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048917	chrX	-	1281	1	ISM	ENSMUSG00000051220.3	ENSMUST00000056904.3	5302	2	12856	1239	12856	-1239	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTCCATTCATTTTCTT	NA	False	NA	-1	True	ATTAAA	-17	NA	101187841	101186560	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_-_101186600_101187800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048929	chrX	-	1564	5	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	0	intron_retention	FALSE	canonical	3	11043	junction_4	2425.28457093183	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTGCTGTTGCTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	101232929	101228546	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231978_101232903
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048934	chrX	-	1194	6	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-1	intron_retention	FALSE	canonical	3	11043	junction_5	2174.6576190288	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	101232929	101228547	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231978_101232903
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048938	chrX	-	2350	4	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-1	intron_retention	FALSE	canonical	3	11043	junction_3	2785.17771226342	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	101232929	101228547	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chrX_-_101228738_101229108_101229267_101230001_101231978_101232903
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048940	chrX	-	873	7	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	5947.93173202996	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	101232929	101228547	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231579_101231899_101231978_101232903
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048944	chrX	-	838	7	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-1	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_5	5946.87781996196	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	101232929	101228547	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231544_101231899_101231978_101232903
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048971	chrX	+	1457	8	NNC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	44.698993277254	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGTCTTCACTGTAACT	NA	False	NA	NA	False	AATAAA	-20	NA	101846568	101853556	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chrX_+_101846789_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048982	chrX	-	1481	8	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	-24	8	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_7	44.1518714790442	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGTCTTCACTGTAACT	NA	False	NA	NA	False	AATAAA	-20	NA	101898246	101891236	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101898002
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048992	chrX	+	194	1	Intergenic	novelGene_393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGAAGATCCCTTAGCAT	NA	False	NA	NA	False	NA	NA	NA	102973836	102974030	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_+_102973800_102974000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000048995	chrX	-	2205	5	FSM	ENSMUSG00000056537.12	ENSMUST00000070705.6	7429	5	9	5215	9	-5215	multi-exon	FALSE	canonical	3	128	junction_4	35.6300435026397	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTCATTGCTTTCTTAG	2382	False	NA	NA	False	TATAAA	-14	NA	103024881	103005983	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_103007650_103008856_103008941_103010096_103010287_103022878_103022941_103024678
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049007	chrX	-	746	1	ISM	ENSMUSG00000033906.6	ENSMUST00000042070.6	5509	12	133350	0	133350	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGTGTCTTTTCTATA	NA	False	NA	NA	False	ATTAAA	-15	NA	103581320	103580574	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_-_103580600_103581300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049019	chrX	+	717	6	NNC	ENSMUSG00000031226.14	novel	1239	6	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_5	559.074950252647	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGGCCAGAGTTCCTTTT	NA	False	NA	5	True	AATAAA	-20	NA	104123375	104160696	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104160432
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049057	chrX	-	1372	1	ISM	ENSMUSG00000031245.9	ENSMUST00000033597.9	1934	6	7499	0	7499	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTTTGCAATATTTCA	NA	False	NA	1	True	AATAAA	-19	NA	108049511	108048139	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_-_108048100_108049500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049070	chrX	+	1369	9	FSM	ENSMUSG00000025525.13	ENSMUST00000026599.10	1359	9	-5	-5	-5	5	multi-exon	FALSE	canonical	3	334	junction_1	40.3205902734571	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTTTATTTATTTTGA	NA	False	NA	12	True	AATAAA	-25	NA	111221025	111282457	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_111221134_111243497_111243603_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111273853_111273968_111274158_111274268_111281890
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049077	chrX	-	744	1	Intergenic	novelGene_394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTTTCTCGTTGGTGATT	NA	False	NA	NA	False	NA	NA	NA	122059580	122058836	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_-_122058800_122059600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049080	chrX	-	196	1	Intergenic	novelGene_395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAGCATACAGGTGAAGG	NA	False	NA	NA	False	NA	NA	NA	128660521	128660325	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_-_128660300_128660500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049094	chrX	+	197	1	Intergenic	novelGene_396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGGCATATACATTTTCC	NA	False	NA	NA	False	NA	NA	NA	133053554	133053751	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_+_133053600_133053800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049108	chrX	-	1827	13	NIC	ENSMUSG00000009596.10	novel	1933	13	NA	NA	4	6	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	5.1010619809343	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTCTCTAATTTCTAACAAG	NA	False	NA	NA	False	NA	NA	NA	133377235	133360860	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chrX_-_133361415_133365048_133365109_133366370_133366484_133366656_133366891_133367272_133367375_133367824_133367898_133368646_133368689_133370864_133370921_133371236_133371259_133372140_133372275_133372779_133372859_133373654_133373717_133376939
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049115	chrX	-	796	1	ISM	ENSMUSG00000048007.5	ENSMUST00000054213.5	1421	2	3814	0	3814	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGACGAAGAGGCTTT	NA	False	NA	-10	True	AATAAA	-16	NA	133438800	133438004	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_-_133438000_133438800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049133	chrX	+	2438	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	-68	-6	-7	0	multi-exon	FALSE	canonical	3	164	junction_3	339.283886377699	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	AATAAA	-25	NA	133501966	133507809	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049168	chrX	+	1550	1	FSM	ENSMUSG00000106264.3	ENSMUST00000196502.3	54	1	-943	-553	-943	553	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134646521	134648071	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_134646500_134648100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049177	chrX	+	1563	1	FSM	ENSMUSG00000048040.9	ENSMUST00000058119.9	1532	1	-27	-4	-27	4	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGGTCCATTATTTAATC	NA	False	NA	24	True	AATAAA	-21	NA	134894545	134896108	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_134894500_134896100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049185	chrX	-	603	1	ISM	ENSMUSG00000042750.8	ENSMUST00000049130.8	903	3	1068	2	1068	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTAGTTCTTTAAA	5224	False	NA	-2	True	AATAAA	-16	NA	134967917	134967314	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_-_134967300_134967900
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049216	chrX	-	734	2	FSM	ENSMUSG00000050071.9	ENSMUST00000113120.2	718	2	-15	-1	-15	0	multi-exon	FALSE	canonical	3	111	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTGTACTCATCTTTTC	NA	False	NA	-2	True	AATAAA	-17	NA	135116207	135114720	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_135115333_135116085
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049245	chrX	-	1821	4	FSM	ENSMUSG00000031422.17	ENSMUST00000113097.8	1825	4	4	0	0	0	multi-exon	TRUE	canonical	3	47	junction_3	1449.75867723639	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	AATAAA	-34	NA	135644435	135633690	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135644341
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049256	chrX	-	543	4	FSM	ENSMUSG00000072955.15	ENSMUST00000127404.8	816	4	-6	279	-6	-279	multi-exon	FALSE	canonical	3	70	junction_2	61.5918465022405	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGTGTGTAACTTCCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	135877624	135856015	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_135856232_135857483_135857589_135876146_135876252_135877507
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049295	chrX	-	1972	3	FSM	ENSMUSG00000031431.14	ENSMUST00000055738.12	1974	3	2	0	2	0	multi-exon	FALSE	canonical	3	154	junction_2	61	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139443934	139440276	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_139441857_139442853_139442906_139443594
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049310	chrX	+	2550	5	FSM	ENSMUSG00000042271.14	ENSMUST00000112916.9	2532	5	-12	-6	-12	6	multi-exon	FALSE	canonical	3	188	junction_1	39.4865483424419	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGTCTTTCTTAAGGTTT	NA	False	NA	17	True	AATAAA	-28	NA	141009753	141022694	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_141009928_141011286_141011378_141012519_141012607_141019779_141019925_141020641
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049328	chrX	+	702	1	ISM	ENSMUSG00000041718.17	ENSMUST00000238864.2	4191	27	55945	0	16871	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143156744	143157446	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_+_143156700_143157400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049332	chrX	+	2042	7	FSM	ENSMUSG00000079387.11	ENSMUST00000163338.2	2025	7	-17	0	-17	0	multi-exon	FALSE	canonical	1	5	junction_3	4.85626742811116	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	147665554	147707135	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_147665664_147686432_147686559_147687278_147687359_147690981_147691941_147698819_147698902_147699707_147699758_147706499
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049345	chrX	-	1313	3	FSM	ENSMUSG00000041353.13	ENSMUST00000148968.8	1316	3	3	0	-1	0	multi-exon	FALSE	canonical	3	95	junction_2	83.5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	GATAAA	-21	NA	149242147	149191573	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_149192597_149203337_149203438_149241957
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049359	chrX	+	1903	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-9	0	combination_of_known_junctions	TRUE	canonical	3	50	junction_2	10.2058806577385	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371242	149426874	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chrX_+_149371339_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049384	chrX	-	1300	4	FSM	ENSMUSG00000025264.13	ENSMUST00000166010.2	1318	4	18	0	-2	0	multi-exon	FALSE	canonical	3	44	junction_3	140.42158745087	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATCCATTGTCCTCCCC	NA	False	NA	-3	True	AATAAA	-21	NA	149879521	149872476	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_149873411_149873600_149873778_149874671_149874764_149879424
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049396	chrX	-	1539	8	NIC	ENSMUSG00000025257.6	novel	1508	8	NA	NA	10	2	combination_of_known_splicesites	FALSE	canonical	3	12	junction_7	33.0126753640761	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTGTCGTAAGAGTACA	NA	False	NA	0	True	AATAAA	-19	NA	150799281	150787575	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799119
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049397	chrX	-	1510	8	FSM	ENSMUSG00000025257.6	ENSMUST00000026288.5	1508	8	0	-2	0	2	multi-exon	FALSE	canonical	3	80	junction_7	14.6816559150582	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTGTCGTAAGAGTACA	NA	False	NA	0	True	AATAAA	-19	NA	150799291	150787575	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799158
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049401	chrX	+	3927	25	FSM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	43	721	43	-721	multi-exon	TRUE	canonical	3	535	junction_3	101.202320735358	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTAATCTAAATTTGATTC	NA	False	NA	20	True	AATAAA	-24	NA	150799466	150844969	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049407	chrX	-	2046	7	FSM	ENSMUSG00000041096.14	ENSMUST00000044509.7	2696	7	650	0	26	0	multi-exon	FALSE	canonical	3	155	junction_2	16.4189930669738	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTCTTGGAGTCTTTTG	NA	False	NA	-4	True	AATAAA	-17	NA	151124771	151119850	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123194_151123298_151123377_151124535
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049447	chrX	-	137	1	ISM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	3175	6	785	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAGCCTGAGCATTTTT	NA	False	NA	-13	True	AATAAA	-18	NA	153996270	153996133	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_-_153996100_153996300
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049482	chrX	+	217	1	Intergenic	novelGene_397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGTCAAAAGAAAGGGTAG	NA	False	NA	NA	False	NA	NA	NA	158276481	158276698	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Intergenic_chrX_+_158276500_158276700
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049536	chrX	-	2318	9	FSM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	-17	-214	-17	214	multi-exon	FALSE	canonical	3	113	junction_1	15.2105021284637	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTACGTATTTATATTCTT	NA	False	NA	2	True	AATAAA	-26	NA	161671460	161639838	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055_161646205_161655510_161655651_161661326_161661401_161665675_161665743_161665963_161666083_161671064
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049549	chrX	+	106	1	Genic_Genomic	ENSMUSG00000031367.16	novel	NA	NA	NA	NA	18052	12	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGACTTCTTTCTTCTC	NA	False	NA	10	True	AATAAA	-25	NA	162712448	162712554	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chrX_+_162712400_162712600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049574	chrX	-	1456	1	Genic_Genomic	ENSMUSG00000040749.12	novel	NA	NA	NA	NA	3963	2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGGTTTTTCTCACTTTT	NA	False	NA	-16	True	AATAAA	-17	NA	162855154	162853698	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	Genic_Genomic_chrX_-_162853700_162855200
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049590	chrX	+	1094	2	ISM	ENSMUSG00000031381.17	ENSMUST00000208741.2	854	6	31	8182	11	-8182	5prime_fragment	FALSE	canonical	3	206	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAGATGGCTGTGCAGGT	NA	False	NA	NA	False	NA	NA	NA	163202813	163206650	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_+_163202837_163205579
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049598	chrX	+	2866	9	FSM	ENSMUSG00000047757.18	ENSMUST00000167446.8	2953	9	90	-3	-30	0	multi-exon	TRUE	canonical	3	98	junction_5	7.72981241687015	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGTTTTCTTTTACTGG	NA	False	NA	NA	False	ATTAAA	-20	NA	163763677	163780268	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_163763807_163765432_163766450_163769555_163769709_163770700_163770794_163774540_163774685_163775726_163775891_163778339_163778768_163778882_163779118_163779765
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049603	chrX	+	220	1	ISM	ENSMUSG00000079317.11	ENSMUST00000116495.8	1613	5	12347	0	7618	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTCATTTGATGCC	NA	False	NA	9	True	AATAAA	-14	NA	165235916	165236136	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_chrX_+_165235900_165236100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049609	chrX	+	882	1	FSM	ENSMUSG00000067147.8	ENSMUST00000118791.2	801	1	-25	-56	-25	56	mono-exon	FALSE	NA	NA	NA	NA	NA	198	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACATCAAATATTTATCTA	NA	False	NA	NA	False	ATTAAA	-12	NA	165637181	165638063	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_chrX_+_165637200_165638100
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049648	SIRV1	-	974	3	FSM	SIRV1A	SIRV106	973	3	-1	0	-1	0	multi-exon	FALSE	canonical	2	497	junction_2	204	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10787	1000	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV1_-_1485_7552_7809_10553
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049649	SIRV1	-	1563	6	FSM	SIRV1A	SIRV101	1561	6	-2	0	-2	0	multi-exon	FALSE	canonical	3	1499	junction_5	1975.53128044078	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10788	1000	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049650	SIRV1	-	1365	6	NNC	SIRV1A	novel	1363	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2380.49302456445	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10791	1000	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10645
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049660	SIRV1	-	673	5	FSM	SIRV1A	SIRV105	670	5	-2	-1	-2	1	multi-exon	FALSE	canonical	3	1547	junction_4	2187.81237769604	755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGGAAGTCAAAAGACTT	NA	False	NA	NA	False	NA	NA	NA	10642	6448	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV1_-_6474_6560_6814_7552_7815_10282_10367_10593
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049663	SIRV1	+	704	3	FSM	SIRV1B	SIRV108	702	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	89	junction_1	13	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAGACATAGGGCGTGG	NA	False	NA	NA	False	NA	NA	NA	10580	11606	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV1_+_10792_10897_11188_11403
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049675	SIRV10001	+	523	1	FSM	SIRV10001A	SIRV10001	9941	1	0	9418	0	-9418	mono-exon	FALSE	NA	NA	NA	NA	NA	277	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAAAAACTTAGGTGAC	NA	False	NA	NA	False	ATTAAA	-37	NA	0	523	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV10001_+_0_500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049678	SIRV10003	+	1978	1	FSM	SIRV10003A	SIRV10003	9970	1	0	7992	0	-7992	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAATGTGGTTGGTCGGAT	NA	False	NA	NA	False	TATAAA	-42	NA	0	1978	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV10003_+_0_2000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049683	SIRV2	-	2053	11	FSM	SIRV2A	SIRV201	2051	11	-1	-1	-1	1	multi-exon	FALSE	canonical	3	240	junction_6	997.649657946115	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCCAACGTGGCATGCGT	NA	False	NA	NA	False	NA	NA	NA	5908	999	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3375_3665_3826_3966_4095_4338_4480_4687_4801_5788
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049686	SIRV2	-	1972	11	FSM	SIRV2A	SIRV202	1971	11	0	-1	0	1	multi-exon	FALSE	canonical	3	173	junction_6	1003.16519576788	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCTCTATAGCTGTATCT	NA	False	NA	NA	False	NA	NA	NA	5911	1034	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4095_4338_4480_4687_4801_5788
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049689	SIRV2	+	523	1	FSM	SIRV2B	SIRV205	523	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	311	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCGTCTACCGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	1108	1631	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV2_+_1100_1600
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049700	SIRV2	-	161	1	NIC	SIRV2A	novel	2051	11	NA	NA	906	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGACGTGGACGTTTC	NA	False	NA	NA	False	NA	NA	NA	3826	3665	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NIC_SIRV2_-_3700_3800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049702	SIRV2	+	426	1	FSM	SIRV2C	SIRV206	424	1	-1	-1	-1	1	mono-exon	FALSE	NA	NA	NA	NA	NA	557	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAACACACTTCCATCCACT	NA	False	NA	NA	False	NA	NA	NA	4032	4458	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV2_+_4000_4500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049704	SIRV3	-	481	3	FSM	SIRV3B	SIRV308	479	3	0	-2	0	2	multi-exon	FALSE	canonical	3	5391	junction_1	17	307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTGTATGGCGGACA	NA	False	NA	NA	False	NA	NA	NA	1982	998	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV3_-_1168_1532_1765_1902
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049709	SIRV3	+	2374	3	FSM	SIRV3A	SIRV306	2373	3	-1	0	-1	0	multi-exon	FALSE	canonical	3	759	junction_2	1218.5	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACCTAACAGTAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	1943	8292	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV3_+_2006_4003_4081_6057
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049714	SIRV3	+	786	5	FSM	SIRV3A	SIRV307	779	5	-6	-1	-6	1	multi-exon	FALSE	canonical	3	1252	junction_4	794.143052289699	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTAACGTCTCGTAAGACG	NA	False	NA	NA	False	NA	NA	NA	1957	8940	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV3_+_2006_4003_4081_4574_4775_6057_6334_8755
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049720	SIRV3	+	437	3	FSM	SIRV3A	SIRV305	436	3	-1	0	-1	0	multi-exon	FALSE	canonical	3	1609	junction_2	828.5	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATCTTAATAGACGATT	NA	False	NA	NA	False	NA	NA	NA	4002	6718	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV3_+_4081_4568_4780_6570
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049728	SIRV3	-	591	3	FSM	SIRV3C	SIRV310	589	3	0	-2	0	2	multi-exon	FALSE	canonical	3	1245	junction_2	66	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGGTTTTGGGTACTGG	NA	False	NA	NA	False	NA	NA	NA	9914	8757	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV3_-_8967_9189_9325_9667
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049731	SIRV3	-	796	3	FSM	SIRV3C	SIRV309	796	3	0	0	0	0	multi-exon	FALSE	canonical	3	1394	junction_2	16	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTCAAATATCTGTGTC	NA	False	NA	NA	False	CATAAA	-21	NA	9943	8797	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV3_-_8976_9189_9299_9434
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049734	SIRV4	+	1571	3	FSM	SIRV4C	SIRV409	1567	3	-4	0	-4	0	multi-exon	FALSE	canonical	3	1019	junction_2	11.5	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	996	3403	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV4_+_1347_1678_1886_2389
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049742	SIRV4	+	441	1	ISM	SIRV4C	SIRV409	1567	3	1962	0	1507	0	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	2962	3403	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_SIRV4_+_3000_3400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049745	SIRV4	-	619	2	FSM	SIRV4B	SIRV406	617	2	0	-2	0	2	multi-exon	FALSE	canonical	3	2584	junction_1	0	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTAAAAATAGCCTGTTA	NA	False	NA	NA	False	NA	NA	NA	5158	3635	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV4_-_4104_5007
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049748	SIRV4	-	596	4	FSM	SIRV4A	SIRV404	592	4	-2	-2	-2	2	multi-exon	FALSE	canonical	3	669	junction_3	2787.93595494747	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATATTTAGAGCGTATG	NA	False	NA	NA	False	NA	NA	NA	14625	8320	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV4_-_8373_8629_8991_13672_13823_14592
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049752	SIRV4	-	628	2	FSM	SIRV4A	SIRV405	626	2	-1	-1	-1	1	multi-exon	FALSE	canonical	3	7498	junction_1	0	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTCTCTTTTCAGCAAGA	NA	False	NA	NA	False	NA	NA	NA	13938	8628	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV4_-_8991_13672
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049758	SIRV4002	+	3999	1	FSM	SIRV4002A	SIRV4002	3999	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	3999	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV4002_+_0_4000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049759	SIRV4003	+	4001	1	FSM	SIRV4003A	SIRV4003	4001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	TATAAA	-45	NA	0	4001	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV4003_+_0_4000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049762	SIRV5	+	2031	16	FSM	SIRV5A	SIRV505	2029	16	0	-2	0	2	multi-exon	FALSE	canonical	3	5578	junction_10	1970.92572045614	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACCGCCAAAAAATGGGAG	NA	False	NA	NA	False	NA	NA	NA	1000	10993	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049766	SIRV5	+	546	2	FSM	SIRV5A	SIRV511	546	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1008	2398	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV5_+_1144_1987
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049769	SIRV5	+	552	2	FSM	SIRV5A	SIRV506	552	2	0	0	0	0	multi-exon	FALSE	canonical	3	11478	junction_1	0	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1008	2398	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV5_+_1150_1987
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049775	SIRV5	+	1986	18	FSM	SIRV5A	SIRV502	1984	18	0	-2	0	0	multi-exon	FALSE	canonical	3	681	junction_4	3430.92271124242	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1019	10991	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049786	SIRV5	+	1891	17	FSM	SIRV5A	SIRV501	1890	17	-1	0	-1	0	multi-exon	FALSE	canonical	3	1808	junction_14	3064.59256060247	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1055	10991	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV5_+_1150_1987_2034_2119_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049789	SIRV5	-	229	1	FSM	SIRV5B	SIRV512	229	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACATGTTAGACCTTTA	NA	False	NA	NA	False	AATATA	-23	NA	2406	2177	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV5_-_2200_2400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049793	SIRV5	+	520	2	ISM	SIRV5A	SIRV503	526	3	-1	149	-1	2	5prime_fragment	FALSE	canonical	3	11825	junction_1	0	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACCGCCAAAAAATGGGAG	NA	False	NA	NA	False	NA	NA	NA	8200	10993	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	ISM_SIRV5_+_8586_10858
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049802	SIRV6	+	1443	9	FSM	SIRV6A	SIRV601	1435	9	-7	-1	-7	1	multi-exon	TRUE	canonical	3	2056	junction_3	7596.8547757855	920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACCGGGAGTATACTTA	NA	False	NA	NA	False	NA	NA	NA	993	11827	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6_+_1187_1468_1535_1640_1736_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049806	SIRV6	+	1439	9	NNC	SIRV6A	novel	1435	9	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9216.09335534179	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACCGGGAGTATACTTA	NA	False	NA	NA	False	NA	NA	NA	999	11827	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_SIRV6_+_1189_1468_1535_1640_1736_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049811	SIRV6	+	1541	10	FSM	SIRV6A	SIRV612	1528	10	0	-13	0	1	multi-exon	FALSE	canonical	0	0	junction_4	7772.9807349673	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACTTAGTTCAATCTTC	NA	False	NA	NA	False	NA	NA	NA	1087	11838	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049815	SIRV6	+	1530	10	NNC	SIRV6A	novel	1528	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9057.66012762978	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1087	11825	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_SIRV6_+_1189_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049818	SIRV6	+	574	8	FSM	SIRV6A	SIRV602	574	8	0	0	0	0	multi-exon	FALSE	canonical	3	8561	junction_3	5767.41567350754	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGCCTAATTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	1124	11279	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6_+_1187_1468_1535_1640_1736_2780_2829_3106_3165_10724_10819_11031_11109_11205
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049827	SIRV6	+	1090	9	NNC	SIRV6A	novel	1088	9	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	9510.43343846641	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	1130	11331	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_SIRV6_+_1189_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049828	SIRV6	+	576	4	NNC	SIRV6A	novel	574	4	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	7100.76629667531	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGCAGTCAAGTCGTAG	NA	False	NA	NA	False	NA	NA	NA	1130	2540	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	NNC_SIRV6_+_1189_1468_1736_1845_2027_2470
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049832	SIRV6	+	488	4	FSM	SIRV6A	SIRV609	485	4	-3	0	-3	0	multi-exon	FALSE	canonical	3	15063	junction_3	5493.41668626083	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACAAGTCAAGCCATTGC	NA	False	NA	NA	False	NA	NA	NA	1134	2120	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049836	SIRV6	+	456	3	FSM	SIRV6A	SIRV611	454	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	2656	junction_1	12443	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGTGTTTATAGTTTA	NA	False	NA	NA	False	NA	NA	NA	1301	1950	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6_+_1382_1468_1535_1640
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049840	SIRV6	-	280	1	FSM	SIRV6B	SIRV617	276	1	-2	-2	-2	2	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTACTTGGGCACCTTG	NA	False	NA	NA	False	NA	NA	NA	1822	1542	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6_-_1500_1800
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049846	SIRV6	+	1351	5	FSM	SIRV6A	SIRV610	1163	5	-188	0	-1	0	multi-exon	FALSE	canonical	3	12902	junction_1	2966.72052736688	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTAAAATGGGGTTTGCC	NA	False	NA	NA	False	ATTAAA	-5	NA	2284	11690	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6_+_2621_2740_2829_3106_3165_10724_11109_11205
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049850	SIRV6	-	190	1	FSM	SIRV6C	SIRV618	189	1	0	-1	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTCTAGCTGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	2547	2357	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6_-_2400_2500
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049852	SIRV6	+	462	5	FSM	SIRV6A	SIRV614	459	5	0	-3	0	3	multi-exon	FALSE	canonical	3	2976	junction_3	7392.30118095847	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGACTGTATCGGAGACG	NA	False	NA	NA	False	AAAAAG	-20	NA	2516	10818	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6_+_2621_2740_2829_3106_3165_7805_7924_10724
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049855	SIRV6	+	378	4	FSM	SIRV6A	SIRV608	377	4	-1	0	-1	0	multi-exon	FALSE	canonical	3	18415	junction_1	2118.18355095954	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTTATTAGCCTGCCTA	NA	False	NA	NA	False	NA	NA	NA	3022	11270	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6_+_3165_10724_10819_11031_11109_11205
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049859	SIRV6	+	1311	6	FSM	SIRV6A	SIRV613	1311	6	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_2	9686.74001715748	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	3105	11824	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6_+_3165_7104_7449_7805_7924_10724_10819_11031_11109_11205
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049863	SIRV6	+	1970	1	FSM	SIRV6A	SIRV603	1969	1	-1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	403	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	ATTAAA	-26	NA	8998	10968	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6_+_9000_11000
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049864	SIRV6	+	785	3	FSM	SIRV6A	SIRV615	783	3	-1	-1	-1	0	multi-exon	FALSE	canonical	3	18822	junction_2	2138	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	10236	11331	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6_+_10819_11031_11109_11205
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049869	SIRV6001	+	1440	1	FSM	SIRV6001A	SIRV6001	6000	1	0	4560	0	-4560	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGAAAAAGTAAACTACCT	NA	False	NA	NA	False	NA	NA	NA	0	1440	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV6001_+_0_1400
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049875	SIRV7	-	2498	5	FSM	SIRV7A	SIRV703	2498	5	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_2	1651.92015167199	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	147918	1000	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049876	SIRV7	-	2248	6	FSM	SIRV7A	SIRV702	2247	6	-1	0	-1	0	multi-exon	FALSE	canonical	3	229	junction_3	1351.00954844886	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	114917	1000	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049877	SIRV7	-	2467	5	FSM	SIRV7A	SIRV701	2462	5	-2	-3	0	0	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	147925	1000	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049885	SIRV7	-	428	3	FSM	SIRV7A	SIRV704	428	3	0	0	0	0	multi-exon	FALSE	canonical	3	4944	junction_1	1233	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTTCGTATTTGCTGCT	NA	False	NA	NA	False	ATTAAA	-33	NA	114738	55849	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV7_-_56098_78841_78964_114680
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049888	SIRV7	-	950	5	FSM	SIRV7A	SIRV706	949	5	-1	0	-1	0	multi-exon	FALSE	canonical	3	3147	junction_1	1522.61994601411	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAGATCGACGAAGTT	NA	False	NA	NA	False	NA	NA	NA	147958	56031	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV7_-_56098_70883_70988_78841_78964_114680_114989_147608
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049892	SIRV7	-	895	6	FSM	SIRV7A	SIRV708	889	6	-1	-5	-1	-1	multi-exon	FALSE	canonical	0	0	junction_4	1573.00102987887	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAGAGATCGACGAAGT	NA	False	NA	NA	False	NA	NA	NA	147958	56032	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV7_-_56098_70883_70988_78841_78909_78928_78964_114686_114961_147608
pacBioSII_CapTrap_Mouse_MpreCap_0+_F121-9_Total_PrimeScriptII.NAM_TM_000000049898	SIRV8003	+	2943	1	FSM	SIRV8003A	SIRV8003	8000	1	0	5057	0	-5057	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCGGTAAGCAGGGGTA	NA	False	NA	NA	False	ATTAAA	-22	NA	0	2943	ES_CapTrap_PacBio	iso_detect_ref_crg_CapTrap_PacBio	FSM_SIRV8003_+_0_2900
